<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:36:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374139" ref_strand="+" ref_description="SGN-E374139 [TUS-33-L1]">
      <seq>ttttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagcaaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgtgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="1991" stop="662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1691" g_stop="1131" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1130" i_stop="1059" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1058" g_stop="962" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="658" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E374139" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1691" e_stop="1131"/>
          <exon e_start="1058" e_stop="962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</genome_strand>
        <mrna_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCAAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363008" ref_strand="+" ref_description="SGN-E363008 [cLPP-2-D5]">
      <seq>ttttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagcaaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="1991" stop="666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1691" g_stop="1131" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1130" i_stop="1059" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1058" g_stop="966" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="654" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E363008" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1691" e_stop="1131"/>
          <exon e_start="1058" e_stop="966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTG</genome_strand>
        <mrna_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCAAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330304" ref_strand="+" ref_description="SGN-E330304 [cTOD-4-N9]">
      <seq>ttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctcctagctctagggttttcggccggggtgagcttgttatggatccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagccaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="1943" stop="667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1643" g_stop="1131" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1130" i_stop="1059" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1058" g_stop="967" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="605" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E330304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1643" e_stop="1131"/>
          <exon e_start="1058" e_stop="967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGT</genome_strand>
        <mrna_strand>TTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334656" ref_strand="+" ref_description="SGN-E334656 [cTOD-23-F7]">
      <seq>tttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctcctagctctagggttttcggccggggtgagcttgttatggatccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagccaaaagaaatgtntcgggtcattccaaaagtacacttgcacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="1978" stop="684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1678" g_stop="1131" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1130" i_stop="1059" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1058" g_stop="984" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="623" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E334656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1678" e_stop="1131"/>
          <exon e_start="1058" e_stop="984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATC</genome_strand>
        <mrna_strand>TTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGTNTCGGGTCATTCCAAAAGTACACTTGCACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363811" ref_strand="+" ref_description="SGN-E363811 [cLPP-3-B20]">
      <seq>ttattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="1956" stop="863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1656" g_stop="1163" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E363811" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1656" e_stop="1163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCG</genome_strand>
        <mrna_strand>TTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330736" ref_strand="+" ref_description="SGN-E330736 [cTOD-8-F11]">
      <seq>aaaaaattattggaatctgttgtgttttccagaagagagacgatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctgacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttgctccttacctgtctcatgtctcttttcatcgatccactctacttctacgtacctttcgtcagcgatcgagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttgcttcacattgccatgaagttccgcacagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="1962" stop="954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1662" g_stop="1254" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E330736" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1662" e_stop="1254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTT</genome_strand>
        <mrna_strand>AAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACGATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTGACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTGCTCCTTACCTGTCTCATGTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATCGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTGCTTCACATTGCCATGAAGTTCCGCACAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294277" ref_strand="+" ref_description="SGN-E294277 [cLET-14-B22]">
      <seq>tttgatgaaaaaaggagcttcaatggaacactcttaattcattcttccttcttttctagcgctaattttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="2056" stop="1042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1756" g_stop="1342" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E294277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1756" e_stop="1342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGA</genome_strand>
        <mrna_strand>TTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294278" ref_strand="+" ref_description="SGN-E294278 [cLET-14-B22](-)">
      <seq>tcatcagtggacatacaagctctatcgctgacgaaaggtacgtagaagtagagtggatcgatgaaaagagagatgagacaggtaaggaggaagacatagttccagcgattgacgatatcgctgtttggatcgagaatttggcgccaccatggcacatcgttcgaaaatgatttgttcttcaaagattgctgtaaatgacggaggtgagacgccggctttgcaaatattctagtcatcttccatggcggagtccgatatcaaaatcggattccggaagattgtctctcttctggaaaacacaacagattccaataatttttttgtattatgaatgaaacagtgagtgaaaattagcgctagaaaagaaggaagaatgaattaagagtgttccattgaagctccttttttcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="1042" stop="2056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1342" g_stop="1756" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E294278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1342" e_stop="1756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCAAA</genome_strand>
        <mrna_strand>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428920" ref_strand="+" ref_description="SGN-E428920 [STM-51-K15]">
      <seq>aggaattccagctattttctcccatttcattaccaacctccctgctttccaccaggtccttgttttcctttgcatcaagtctgtcccagtacctcacgttagacctgaagaaaggttccttgttggaagaatcggacccaaagagttccgtgtatacagatgcatagcacgatatggttatcgagacattcacatggatgacgtagagtttgaaaaggatctagtttgtagcatagctgaattcatccgctcagagggacgaggacagagttttgaagctgtagaagatatagacgccaatgaaaggctgacggttattgggacaacttcaacacacattgatgggataagaatatgcgaggagaacagagagttgactcatgtagatacagaaatgatagaaatcagctcgccagaagtagcacgaaaaagagtaagatttctggtgccagagagtccacaaatggatttaagcgttcgcgaagagttgcaagaactcatggaagctagggaagcagggatggcatttatacttggtcattgttatgttagagctaaaaggggttcaagtttgataaaaaaactggtgattaacataggatatgactttttaagaagaaattgtcgtggaccaacatatgcattgagcttccctcaagcttcaactttggaggttggaatgatctaccatgtataatttgtgcttttactttttttctaattaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="15818" stop="17146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16118" g_stop="16846" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E428920" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16118" e_stop="16846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTCCAGCTATTTTCTCCCATTTCGTCACCAACCTCCCTGCTTTCCACCAGGTTCTTGTATTCCTTTGCATCAAGTCCGTCCCAGTACCTCACGTGAGACCTGAAGAAAGGTTCCTTGTTGGAAGAATTGGACCGAAAGAGTACCGTGTCTACAGATGCATAGCACGATATGGTTATCGAGACATTCACATGGATGACGTAGAGTTTGAAAAGGACTTAGTTTGTAGCATAGCTGAATTCATCCGCTCAGAGGGACGAGGACATAGTTTTGAAGCTGTAGAAGATATAGACGCGAATGAAAGGCTGACTGTTATTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGC-TTTACTTTTTTTCTAATTAAAGGAT</genome_strand>
        <mrna_strand>AGGAATTCCAGCTATTTTCTCCCATTTCATTACCAACCTCCCTGCTTTCCACCAGGTCCTTGTTTTCCTTTGCATCAAGTCTGTCCCAGTACCTCACGTTAGACCTGAAGAAAGGTTCCTTGTTGGAAGAATCGGACCCAAAGAGTTCCGTGTATACAGATGCATAGCACGATATGGTTATCGAGACATTCACATGGATGACGTAGAGTTTGAAAAGGATCTAGTTTGTAGCATAGCTGAATTCATCCGCTCAGAGGGACGAGGACAGAGTTTTGAAGCTGTAGAAGATATAGACGCCAATGAAAGGCTGACGGTTATTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGAGAACAGAGAGTTGACTCATGTAGATACAGAAATGATAGAAATCAGCTCGCCAGAAGTAGCACGAAAAAGAGTAAGATTTCTGGTGCCAGAGAGTCCACAAATGGATTTAAGCGTTCGCGAAGAGTTGCAAGAACTCATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAACTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACTTTGGAGGTTGGAATGATCTACCATGTATAATTTGTGCTTTTACTTTTTTTCTAATTAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481407" ref_strand="+" ref_description="SGN-E481407 [cSTD-18-I1]">
      <seq>aggaattccagctattttctcccatttcattaccaacctccctgctttccaccaggtccttgttttcctttgcatcaagtctgtcccagtacctcacgttagacctgaagaaaggttccttgttggaagaaatcggacccaaagagttccgtgtatacagatgcatagcacgatatggttatcgagacattcacatggatgacgtagagtttgaaaaggatctagtttgtagcatagctgaattcatccgctcagagggacgaggacagagttttgaagctgtagaagatatagacgccaatgaaaggctgacggttattgggacaacttcaacacacattgatgggataagaatatgcgaggagaacagagagttgactcatgtagatacagaaatgatagaaatcagctcgccagaagtagcacgaaaaagagtaagatttctggtgccagagagtccacaaatggatttaagcgttcgcgaagagttgcaagaactcatggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="15818" stop="16925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16118" g_stop="16625" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E481407" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16118" e_stop="16625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTCCAGCTATTTTCTCCCATTTCGTCACCAACCTCCCTGCTTTCCACCAGGTTCTTGTATTCCTTTGCATCAAGTCCGTCCCAGTACCTCACGTGAGACCTGAAGAAAGGTTCCTTGTTGGAAG-AATTGGACCGAAAGAGTACCGTGTCTACAGATGCATAGCACGATATGGTTATCGAGACATTCACATGGATGACGTAGAGTTTGAAAAGGACTTAGTTTGTAGCATAGCTGAATTCATCCGCTCAGAGGGACGAGGACATAGTTTTGAAGCTGTAGAAGATATAGACGCGAATGAAAGGCTGACTGTTATTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCT</genome_strand>
        <mrna_strand>AGGAATTCCAGCTATTTTCTCCCATTTCATTACCAACCTCCCTGCTTTCCACCAGGTCCTTGTTTTCCTTTGCATCAAGTCTGTCCCAGTACCTCACGTTAGACCTGAAGAAAGGTTCCTTGTTGGAAGAAATCGGACCCAAAGAGTTCCGTGTATACAGATGCATAGCACGATATGGTTATCGAGACATTCACATGGATGACGTAGAGTTTGAAAAGGATCTAGTTTGTAGCATAGCTGAATTCATCCGCTCAGAGGGACGAGGACAGAGTTTTGAAGCTGTAGAAGATATAGACGCCAATGAAAGGCTGACGGTTATTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGAGAACAGAGAGTTGACTCATGTAGATACAGAAATGATAGAAATCAGCTCGCCAGAAGTAGCACGAAAAAGAGTAAGATTTCTGGTGCCAGAGAGTCCACAAATGGATTTAAGCGTTCGCGAAGAGTTGCAAGAACTCATGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540619" ref_strand="+" ref_description="SGN-E540619 [TUS-60-P21](-)">
      <seq>ttgggacaacttcaacacacattgatgggataagaatatgcgaggacaacggagagttgactcatgtagatacagaaatgatagagatcagctcgccagaagttccacgaaaaagagtaagatttctggtgcctgagagcccacaaatggatgcaagtgttcgcgaagagttgcaagaacttatggaagctagggaagcagggatggcatttatacttggtcattgttatgttagagctaaaaggggttcaagtttgataaaaaagctggtgattaacataggatatgactttttaagaagaaattgtcgtggaccaacatatgcattgagcttccctcaagcttcaacattggaggttggaatgatctaccatgtataatttatgctttactttttttctaattaaaggatagaattgtagcatatgttttttgtttttttttgtatttcaaattcgaaaagctttgtaaatgttgtaatggtacacgagtttttgctttatacaaggcaataaattaaaaggaaatactgaactttagaggcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="16135" stop="17279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16435" g_stop="16980" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="558"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E540619" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16435" e_stop="16980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGCAT</genome_strand>
        <mrna_strand>TTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540621" ref_strand="+" ref_description="SGN-E540621 [TUS-60-P21]">
      <seq>ttgggacaacttcaacacacattgatgggataagaatatgcgaggacaacggagagttgactcatgtagatacagaaatgatagagatcagctcgccagaagttccacgaaaaagagtaagatttctggtgcctgagagcccacaaatggatgcaagtgttcgcgaagagttgcaagaacttatggaagctagggaagcagggatggcatttatacttggtcattgttatgttagagctaaaaggggttcaagtttgataaaaaagctggtgattaacataggatatgactttttaagaagaaattgtcgtggaccaacatatgcattgagcttccctcaagcttcaacattggaggttggaatgatctaccatgtataatttatgctttactttttttctaattaaaggatagaattgtagcatatgttttttgtttttttttgtatttcaaattcgaaaagctttgtaaatgttgtaatggtacacgagtttttgctttatacaaggcaataaattaaaaggaaatactgaactttagaggcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="16135" stop="17279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16435" g_stop="16980" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="558"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E540621" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16435" e_stop="16980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGCAT</genome_strand>
        <mrna_strand>TTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289621" ref_strand="+" ref_description="SGN-E289621 [cLET-4-H1]">
      <seq>tgggacaacttcaacacacattgatgggataagaatatgcgaggacaacggagagttgactcatgtagatacagaaatgatagagatcagctcgccagaagttccacgaaaaagagtaagatttctggtgcctgagagcccacaaatggatgcaagtgttcgcgaagagttgcaagaacttatggaagctagggaagcagggatggcatttatacttggtcattgttatgttagagctaaaaggggttcaagtttgataaaaaagctggtgattaacataggatatgactttttaagaagaaattgtcgtggaccaacatatgcattgagcttccctcaagcttcaacattggaggttggaatgatctaccatgtataatttatgctttactttttttctaattaaaggatagaattgtagcatatgttttttgtttttttttgtatttcaaattcgaaaagctttgtaaatgttgtaatggtacacgagtttttgctttatacaaggcaataaattaaaaggaaatactgaactttagaggcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="16136" stop="17279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16436" g_stop="16980" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="557"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E289621" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16436" e_stop="16980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGCAT</genome_strand>
        <mrna_strand>TGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428921" ref_strand="-" ref_description="SGN-E428921 [STM-51-K15]">
      <seq>aaatgatagaaatcagctcgccagaagtagcccgaaaaagagtaagatttctggtgccagagagtccacaaatggatttaagcgttcgcgaagagttgcaagaactcatggaagctagggaagcagggatggcatttatacttggtcattgttatgttagagctaaaaggggttcaagtttgataaaaaaactggtgattaacataggatatgactttttaagaagaaattgtcgtggaccaacatatgcattgagcttccctcaagcttcaactttggaggttggaatgatttaccatgtataatttgtgcttttactttttttttaattaaaggatagaattgtagcatatgttttttcttttttggtattttttaaattcgaaaagctttgtaaatgttgtaatggtacatgagtttttgctttatacaaggcaataaataccccgagaaaaggaaatactgagccttagaggcatgtatgtttgaataaagggataaaatatgagttaaacaagttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="16210" stop="86200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16510" g_stop="17027" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17028" i_stop="17603" i_length="576">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.893" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17604" g_stop="17630" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="552" r_length="27" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17631" i_stop="17791" i_length="161">
            <donor d_prob="0.592" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17792" g_stop="17805" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="566" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E428921" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428921" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16510" e_stop="17027"/>
          <exon e_start="17604" e_stop="17630"/>
          <exon e_start="17792" e_stop="17805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGC-TTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAAT-------TAAAAGGAAATACTGAACTTTAGAGGCATGTACGTTTGAATAAAGAGATGGAAATATGAGTTTAACAAGTTGTTTAATATTATCTTGTTATGTATTACGTGGCCTATGTCTCTTCTTATGTATAACTACTTTATTACGTGGCCTATGTCTAACGGGGCTAGGGTTGGACGTTCTAAATTTTTTCTTTTAAAATGAAAAGGAAGAGTTTCGGTTCTAAATTTTGTTTCATTTTTTAAATAAAAGATAGGGGTTCTAAGTCTTTAACCTACGATTTTAGTATAAAATATTTTTACGTTCCATTATTTAACACTGAACAATAACTGTCAATCAATTTTATTAAAAATTTACAAGTTAATATACATATAAGATTTATGAAAAAATTATTAATTCGTTTAAATTTATGAGCTCTTATCCAACATACGCTAAATAATTTTTTTGTTGCGAAGAAACGATGGAAATTAAATAACGGAATTTTGGGATGAGTATGAATCTTTTACTTAGAGTACATAAGACGCAATGAATCTTTTACTCATTCTTTCTTGACAAAACGTGATGACGAGGGAAAAGAGCAAATGAATCATTTTTGTTTTTTAAGTCTCGAATTAAACAAAAAGAATGAATAAATAAAAAGAATGAATTATTTTCTTTTTAGATCACGAATTAAATAAAAAGAACTCAGGCAAGTTCCTCAAGGTTTGGACCCCCATACCCACCAATTTCAAATAACAAATTATTAGTTATATTTTATTATAAATGATAGAAAACTTAAGAAACAATGGTAAAATAAGATGTTTTTGTTAGTTTAATTTTTTTTATATATTACTTATTTAAATATAAAAGTAATATGAGAAAAA</genome_strand>
        <mrna_strand>AAATGATAGAAATCAGCTCGCCAGAAGTAGCCCGAAAAAGAGTAAGATTTCTGGTGCCAGAGAGTCCACAAATGGATTTAAGCGTTCGCGAAGAGTTGCAAGAACTCATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAACTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACTTTGGAGGTTGGAATGATTTACCATGTATAATTTGTGCTTTTACTTTTTTTTTAATTAAAGGATAGAATTGTAGCATATGTTTTTTCTTTTTTGGTATTTTTTAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACATGAGTTTTTGCTTTATACAAGGCAATAAATACCCCGAGAAAAGGAAATACTGAGCCTTAGAGGCATGTATGTTTGAATAAAGGGAT-AAAATATGAGTTAAACAAGTTGTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260102" ref_strand="+" ref_description="SGN-E260102 [cLEG-52-P16]">
      <seq>ggaggcatgcaacatccaccatatcagagaaatatgaagtcagtgaggcctcccataattccgccagaagatgaatacgagaaacaggatgaaaacctgtttctatcactaggaaggcttgttatgaacactggttcgactgtggttgaaatatttggaggaatgttctcaggtttcagaaagaacagttacccccatcatgtacagcagcactaccattacaatcacaaacaatcgagtacatggccaatgcaggaaagctatgtaattcgagatgaagatgaggccccaccccttgataccagagaccctacaccccgaaaaacctatccaatcatgaacaaagacccggagaaaccacgacatatcagacaaagtcaatcacattatgtaggatggaatggcaatgcacatgggcatggcaattttcagcaacaacaacatcaacatcaacaacagtttcttccacaagtgtatcagcatcacgacaagcaccagtcatcaagtcctcaaacatactacgaggaaagctgtgaaacgaaagagattgtgtttggagcagttcaagaacaggatggacgacatgaaacaatggtgataaaagcagttgattatggggatcctgcttataacaatcacaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="20965" stop="22207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21264" g_stop="21907" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E260102" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21264" e_stop="21907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGT</genome_strand>
        <mrna_strand>GGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551519" ref_strand="+" ref_description="SGN-E551519 [TUS-55-C6]">
      <seq>gaggcatgcaacatccaccatatcagagaaatatgaagtcagtgaggcctcccataattccgccagaagatgaatacgagaaacaggatgaaaacctgtttctatcactaggaaggcttgttatgaacactggttcgactgtggttgaaatatttggaggaatgttctcaggtttcagaaagaacagttacccccatcatgtacagcagcactaccattacaatcacaaacaatcgagtacatggccaatgcaggaaagctatgtaattcgagatgaagatgaggccccaccccttgataccagagaccctacaccccgaaaaacctatcccatcatgaacaaagacccggagaaaccacgacatatcagacaaagtcaatcacattatgtaggatggaatggcaatgcacatgggcatggcaattttcagcaacaacaacatcaacatcaacaacagtttcttccacaagtgtatcagcatcacgacaagcaccagtcatcaagtcctcaaacatactacgaggaaagctgtgaaacgaaagagattgtgtttnggagcagttcagaacaggatggacgacatgnaaacatggtgantaaagcagttgattatggggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="20965" stop="22185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21265" g_stop="21885" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E551519" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21265" e_stop="21885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTT-GGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATC</genome_strand>
        <mrna_strand>GAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCCATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTNGGAGCAGTTC-AGAACAGGATGGACGACATGNAAACATGGTGANTAAAGCAGTTGATTATGGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688866" ref_strand="+" ref_description="SGN-E688866 [t3_tus_55_C06]">
      <seq>gaggcatgcaacatccaccatatcagagaaatatgaagtcagtgaggcctcccataattccgccagaagatgaatacgagaaacaggatgaaaacctgtttctatcactaggaaggcttgttatgaacactggttcgactgtggttgaaatatttggaggaatgttctcaggtttcagaaagaacagttacccccatcatgtacagcagcactaccattacaatcacaaacaatcgagtacatggccaatgcaggaaagctatgtaattcgagatgaagatgaggccccaccccttgataccagagaccctacaccccgaaaaacctatcccatcatgaacaaagacccggagaaaccacgacatatcagacaaagtcaatcacattatgtaggatggaatggcaatgcacatgggcatggcaattttcagcaacaacaacatcaacatcaacaacagtttcttccacaagtgtatcagcatcacgacnagcaccagtcatcaagtcctcaaacatactacgaggaaagctgtgaaacgaaagagattgtgtttggagcagttctagaacaggatggacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="20965" stop="22145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21265" g_stop="21845" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E688866" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21265" e_stop="21845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGA</genome_strand>
        <mrna_strand>GAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCCATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACNAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCTAGAACAGGATGGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712132" ref_strand="+" ref_description="SGN-E712132 [FB04AA02]">
      <seq>caattttcagcaacaacaacatcaacaacagtttcttccacaagtgtatcagcatcacgacaagcaccagtcatcaagtcctcaaacatactacgaggaaagctgtgaaacgaaagagattgtgtttggagcagttcaagaacaggatggacgacatgaaacaatggtgataaaagcagttgattatggggatcctgcttataacaatcacaacgttcgatccaggtacaactacagcacgcgttactcattctgatggtaatagctagacgaccattgcgaaaaacatcaacttgtactctgtctggatttcacttgttgtatctttcatagggaaatggatatgatcatagaaaacagcaccaacaaagtatatgaattctgaatttcttttgtaatccataacttatagtgaatctttttgagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="21399" stop="22428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21692" g_stop="22131" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E712132" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21692" e_stop="22131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAACTACAGCACGCGTTACTCATTCTGATGGTAATAGCTAGACGACCATTGCGAAAAACATCAACTTGTACTCTGTCTGGATTTCACTTGTTGTATCTTTCATAGGGAAATGGATATGATCATAGAAAACAGCACCAACAAAGTATATGAATTCTGAATTTCTTTTGTAATCCATAACTTATAGTGAATCTTTTTGAGAATTAAGTATATTT</genome_strand>
        <mrna_strand>CAATTTTCAGCAACAACAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAACTACAGCACGCGTTACTCATTCTGATGGTAATAGCTAGACGACCATTGCGAAAAACATCAACTTGTACTCTGTCTGGATTTCACTTGTTGTATCTTTCATAGGGAAATGGATATGATCATAGAAAACAGCACCAACAAAGTATATGAATTCTGAATTTCTTTTGTAATCCATAACTTATAGTGAATCTTTTTGAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208650" ref_strand="+" ref_description="SGN-E208650 [cLEC-39-I24]">
      <seq>aaaattccatatttatctgcaaacaacaaaacccctaatttaaaggggttgcggattgtgtgatattttctcctttcttgttggtgtcgtcaatttcttgaaacatggcgggtcaaacaaacacaaaagactcggacgtgaatgaagaattgcaggagctccaattcacgaaaaggggttgttgcttttggtttccatctttcacatgtggaagaagcgtttgggaaccagtctctaccagcgatcaaaaggaagaaacgcattggtgggataagggggtaaacgttgttatgaaagtcacggagtggtcggaacttgtggcaggtccaaaatggaagacatttattagacgattcaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="27579" stop="28541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27879" g_stop="28241" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E208650" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27879" e_stop="28241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCCATATTTATCTGCAAACAACAAAACCCCTAATTTAAAGGGGTTGCGGATTGTGTGATATTTTCTCCTTTCTTGTTGTTGTCGTCAATTTCTTGAAACATGGCGGGTCAAACAAACACAAAAGACTCGGACGTGAATGAAGAATTGCAGGAGCTCGAATTCACGAAAAGGGGTTGTTGTTTTTGGTTTCCATCTTTCACATGTGGAAGAGGCGTTTGGGAACGAGTCTCTACCAGTGATCAAAAGGAAGAAACGCATTGGTGGGATAAGGGGTTAAACGTTGTTATGAAAGTCAGGGAGTGGTCGGAACTTGTGGCAGGTCCAAAATGGAAGACATTTATTAGACGATTCAATAAAA</genome_strand>
        <mrna_strand>AAAATTCCATATTTATCTGCAAACAACAAAACCCCTAATTTAAAGGGGTTGCGGATTGTGTGATATTTTCTCCTTTCTTGTTGGTGTCGTCAATTTCTTGAAACATGGCGGGTCAAACAAACACAAAAGACTCGGACGTGAATGAAGAATTGCAGGAGCTCCAATTCACGAAAAGGGGTTGTTGCTTTTGGTTTCCATCTTTCACATGTGGAAGAAGCGTTTGGGAACCAGTCTCTACCAGCGATCAAAAGGAAGAAACGCATTGGTGGGATAAGGGGGTAAACGTTGTTATGAAAGTCACGGAGTGGTCGGAACTTGTGGCAGGTCCAAAATGGAAGACATTTATTAGACGATTCAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204201" ref_strand="+" ref_description="SGN-E204201 [cLEC-13-K8]">
      <seq>gttgttggttctaaatagccctttgattgtgctgtttgcttgtgtgaattctctgataaggacaaattgatattgctccctacttgtagccatgctttccatatcaactgcattgatacttggctcctctctaactcaacgtgccctctttgacgagcaactcttttcaatcccgggtttcccattgaaaatccaattttcgattacgttgaaccgagagatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="33235" stop="32407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32935" g_stop="32707" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E204201" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32935" e_stop="32707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGGTCCTAAAGAGCCCTTTGATTGTGCTGTTTGCTTGTGTGAATTCTCTGATAAGGACAAATTGAGATTGCTCCCTACTTGTAGCCATGCTTTCCATATCAACTGCATTGATACTTGGCTCCTCTCTAACTCAACGTGCCCTCTTTGTCGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTACGTTGAACCGAGAGATGATGATG</genome_strand>
        <mrna_strand>GTTGTTGGTTCTAAATAGCCCTTTGATTGTGCTGTTTGCTTGTGTGAATTCTCTGATAAGGACAAATTGATATTGCTCCCTACTTGTAGCCATGCTTTCCATATCAACTGCATTGATACTTGGCTCCTCTCTAACTCAACGTGCCCTCTTTGACGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTACGTTGAACCGAGAGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300882" ref_strand="+" ref_description="SGN-E300882 [cLEW-8-B12]">
      <seq>agacaggtaaagattctgtctttagcattttctgtttggtttcatcactatctcttgttatttgctctgtcactaaattgtgttttcttttgaaaaaaaaacaaaagactccaacttttcttgaatctgaagggacagtgattctgaatgtttgagtttttctaagcttctgagatggtgaaaggtagataaaaaaagttggtttttttttaatgagttgttgagatgatttgttcatttggtgaagttgagtcacaaagatgggtttctgggcatacccatctgaaaagttcttggattcaatatagaaaagatggtgtttttacatatcctcctcctctgtttcccccatctcctcctccatttggtggaagttctagttttcataaggaaccaaactcatcttcttcatccccatctggaaacaagattagtccagctgttcttttcattatagttatattagctgtcctgtttttcatatctggtctgcttcatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="33913" stop="32811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33613" g_stop="33111" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E300882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33613" e_stop="33111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACCAAACTCATCTTCTTCATCCCCATCTGGAAACAAGATTAGTCCAGCTGTTCTTTTCATTATAGTTATATTAGCTGTCCTGTTTTTCATATCTGGTCTGCTTCATTTGCT</genome_strand>
        <mrna_strand>AGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACCAAACTCATCTTCTTCATCCCCATCTGGAAACAAGATTAGTCCAGCTGTTCTTTTCATTATAGTTATATTAGCTGTCCTGTTTTTCATATCTGGTCTGCTTCATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329984" ref_strand="+" ref_description="SGN-E329984 [cTOD-5-N15]">
      <seq>ttaaacatagagagaaaaataggctcaaaaatattcaaacttttttttttctatttatgttgtaaaagggatttcaagatcctataaatgtcttatggttttgctgcagccagaagtgattctttatataaagggattgttataagtattgtttttctgtgtaatggtgactaagtgggaatcaagacaggtaaagattctgtctttagcattttctgtttggtttcatcactatctcttgttatttgctctgtcactaaattgtgttttcttttgaaaaaaaaacaaaagactccaacttttcttgaatctgaagggacagtgattctgaatgtttgagtttttctaagcttctgagatggtgaaaggtagataaaaaaagttggtttttttttaatgagttgttgagatgatttgttcatttggtgaagttgagtcacaaagatgggtttctgggcatacccatctgaaaagttcttggattcaatatagaaaagatggtgtttttacatatcctcctcctctgtttcccccatctcctcctccatttggtggaagttctagttttcataaggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="34097" stop="32919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33797" g_stop="33219" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E329984" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33797" e_stop="33219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACC</genome_strand>
        <mrna_strand>TTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTATGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468273" ref_strand="+" ref_description="SGN-E468273 [cSTB-3-K11]">
      <seq>taaacatagagagagaaaaataggctcaaaaatattcaaaccttctctttttttctatttatgttgtataagggatttcaagaatcctataaatgtcttagggttttgctgcagcctgaagtgattctttatataaagggattgctataagtattgtttttctgtgtaatggtgactaagtgggaatcaagacaggtaaagattctgtctttagcattttatgtttggtttcatcactatctcttgttatttgctctgtcagtaaattgtgttttcttttgaaaaaaaacaaaagactccaacttttcttgaatctgaaggtatagtgattctggatgtttgagtttttttttagcttctgagatggtgaaagggagataaaaaagttgggttttttttaatatgtttttgagatgatttgttcatttggtgaagttgagtcacaaagatgggtttctaggaatacccatttgaaaagttcttggattcaacatagaaaagatggtgtctttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="34097" stop="32985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33798" g_stop="33285" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E468273" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33798" e_stop="33285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAA-CTT-T-TTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAG-ATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAG-TTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATA</genome_strand>
        <mrna_strand>TAAACATAGAGAGAGAAAAATAGGCTCAAAAATATTCAAACCTTCTCTTTTTTTCTATTTATGTTGTATAAGGGATTTCAAGAATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCTGAAGTGATTCTTTATATAAAGGGATTGCTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTATGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCAGTAAATTGTGTTTTCTTTTG-AAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGTATAGTGATTCTGGATGTTTGAGTTTTTTTTTAGCTTCTGAGATGGTGAAAGGGAGAT-AAAAAAGTTGGGTTTTTTTTAATATGTTTTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTAGGAATACCCATTTGAAAAGTTCTTGGATTCAACATAGAAAAGATGGTGTCTTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306679" ref_strand="+" ref_description="SGN-E306679 [cLEY-19-G7]">
      <seq>actagtctcgagttttatattttacacactatttttttctatgttgctaaaaactagaaattgtttaaacatagagagaaaaataggctcaaaaatattcaaacttttttttttctatttatgttgtaaaagggatttcaagatcctataaatgtcttagggttttgctgcagccagaagtgattctttatataaagggattgttataagtattgtttttctgtgtaatggtgactaagtgggaatcaagacaggtaaagattctgtctttagcattttctgtttggtttcatcactatctcttgttatttgctctgtcactaaattgtgttttcttttgaaaaaaaaacaaaagactccaacttttcttgaatctgaagggacagtgattctgaatgtttgagtttttctaagcttctgagatggtgaaaggtagataaaaaaagttggtttttttttaatgagttgttgagatgatttgttcatttggtgaagttgagtcacaaagatgggtttctgggcatacccatctgaaaagttcttggattcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="34150" stop="33008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33862" g_stop="33308" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E306679" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33862" e_stop="33308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTTCTCTGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATAT</genome_strand>
        <mrna_strand>ACTAGTCTC-GAGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468353" ref_strand="+" ref_description="SGN-E468353 [cSTB-3-K22]">
      <seq>taaacatagagagagaaaaataggctcaaaaatattcaaacttctctttttttctatttatgttgtataagggatttcaagatcctataaatgtcttaaggttttgctgcagcctgaagtgattctttatataaagggattgctataagtattgtttttctgtgtaatggtgactaagtgggaatcaagacaggtaaagattctgtctttagcattttatgtttggtttcatcactatctcttgttatttgctctgtcagtaaattgtgttttcttttgaaaaaaaacaaaagactccaacttttcttgaatctgaaagtatagtgattctggatgtttgagtttttttttagcttctgagatggtgaaagggagataaaaaagttgggttttttttaatatgtttttgagatgatttgttcatttggtgaagttgagtcacaaagatgggtttctaggaatacccatttgaaaagttcttggattcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="34097" stop="33008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33798" g_stop="33308" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E468353" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33798" e_stop="33308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTT-T-TTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTT-TTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATAT</genome_strand>
        <mrna_strand>TAAACATAGAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTCTCTTTTTTTCTATTTATGTTGTATAAGGGATTTCAAGATCCTATAAATGTCTTAAGGTTTTGCTGCAGCCTGAAGTGATTCTTTATATAAAGGGATTGCTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTATGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCAGTAAATTGTGTTTTCTTTTG-AAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAAGTATAGTGATTCTGGATGTTTGAGTTTTTTTTTAGCTTCTGAGATGGTGAAAGGGAGAT-AAAAAAGTTGGGTTTTTTTTAATATGTTTTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTAGGAATACCCATTTGAAAAGTTCTTGGATTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318675" ref_strand="+" ref_description="SGN-E318675 [cTOB-9-K17]">
      <seq>agacttgtcagttgacagcttttggtttccaaataagtcaatgtcctttttcagttcaaaatcacccctctaacttctctgttttatattttacacactatttttttctatgttgctaaaaactagaaattgtttaaacatagagagaaaaataggctcaaaaatattcaaacttttttttttctatttatgttgtcaaagggatttcaagatcctataaatgtcttagggttttgctgcagccagaagtgattctttatataaagggattgctataagtattgtttttctgtgtaatggtgactaagtgggaatcaagacaggtaaagattctgtctttagcattttctgtttggtttcatcactatctcttgttatttgctctgtcactaaattgtgttttcttttgaaaaaaaaacaaaagactccaacttttcttgaatctgaagggacagtgattctgaatgtttgagtttttctaagcttctgagatggtgaaaggtagataaaaaaagatggttttttttttttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="34230" stop="33098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33930" g_stop="33395" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E318675" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33930" e_stop="33395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTGTCAGTTGACAGCTTTTGGTTTCCAAATAAGTCAATGTCCTTTTTCAGTTCAAAATCACCCCTCTAACTTCTCTGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTT</genome_strand>
        <mrna_strand>AGACTTGTCAGTTGACAGCTTTTGGTTTCCAAATAAGTCAATGTCCTTTTTCAGTTCAAAATCACCCCTCTAACTTCTCTGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTCAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGCTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGATGGTTTTTTTTTTTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="36730" stop="35978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36430" g_stop="36278" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36430" e_stop="36278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTCTCTCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGTAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338497" ref_strand="+" ref_description="SGN-E338497 [cTOE-15-F4]">
      <seq>aggattttgtgtttgacataatctattacatacaaaaatttctaatttgattgaccacaagttctaagagtagattttgaagattattttttaaatatatgtttgatattttcaagttgtcatgaactaactcatactttcattagtccaaattatttaaatacgaaaaatattcaagttgacaactctaccctaccctgctttggccgcagtagtcaaatttctctttcttttaggtttaagcacgataggcaaataaaaagggtccaacttgattaatgaaacccaaaaaaaaaaaaaacattatcaaattttgtacggcaatgaaaaagttgatgtctttcttctgaagaaaaaaaaggattcttgactaggtgtgggactgggagtgtaaagaaagaaaaatggtgatgcaatgttggtcaactgatttcttgccctttttggcaatggtgatggtggaatgttgtgaaatgttgatgattacacttggtaaagcagccatgaatgatggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="36576" stop="37693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36876" g_stop="37393" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E338497" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36876" e_stop="37393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTTGTGTTTGACATAATCTATTACATACAAAAATTTCTAATTTGATTGACCACAAGTTCTAAGAGTAGATTTTGAAGATTATTTTTTAAATATATGTTTGATATTTTCAAGTTGTCATGAACTAACTCATACTTTCATTAGTACAAATTATTTAAATACGAAAAATATTCAAGTTGACAACTCTACCCTACCCTGCTTTGGCCGCAGTAGTCAAATTTCTCTTTCTTTTAGGTTTAAGCACGATAGGCAAATAAAAAGGGTCCAACTTGATTAATGAAACCAAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGTTGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTG</genome_strand>
        <mrna_strand>AGGATTTTGTGTTTGACATAATCTATTACATACAAAAATTTCTAATTTGATTGACCACAAGTTCTAAGAGTAGATTTTGAAGATTATTTTTTAAATATATGTTTGATATTTTCAAGTTGTCATGAACTAACTCATACTTTCATTAGTCCAAATTATTTAAATACGAAAAATATTCAAGTTGACAACTCTACCCTACCCTGCTTTGGCCGCAGTAGTCAAATTTCTCTTTCTTTTAGGTTTAAGCACGATAGGCAAATAAAAAGGGTCCAACTTGATTAATGAAACCCAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGATGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314851" ref_strand="+" ref_description="SGN-E314851 [cTOA-20-N10]">
      <seq>agggtccaacttgattaatgaaaccaaaaaaaaaaaaaaacattatcaaattttgtacggcaatgaaaaagttgttgtctttcttctgaagaaaaaaaaggattcttgactaggtgtgggactgggagtgtaaagaaagaaaaatggtgatgcaatgttggtcaactgatttcttgccctttttggcaatggtgatggtggaatgttgtgaaatgttgatgattacacttggtaaagcagccatgaatgatggattgaacaatcttgtttatgttgtttactataatgcccttggtaccctttttcttcttccttgcttaatcttccatagacacagaagcaatatggttcctattactttgcctatattgtggagattcttccttcttggcctgttgggaatttgtttggtgcaagctgtggcctttacaggtattaagtacagcactcctacactggcagctgctttagggaatttgatgccaggttttacatttttgcttgccatcattttcaggatggagaagttagatataacaaaggccagcagtcaagcaaaatctgtgggcaccgtagtggcaattatgggggcatccatcatgacattatacaaaggaccaagggtactaggatcaaatttaccttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="36837" stop="38828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37137" g_stop="37473" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37474" i_stop="37550" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37551" g_stop="37613" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="400" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37614" i_stop="37688" i_length="75">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37689" g_stop="37805" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="517" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37806" i_stop="38396" i_length="591">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38397" g_stop="38528" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="649" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E314851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37137" e_stop="37473"/>
          <exon e_start="37551" e_stop="37613"/>
          <exon e_start="37689" e_stop="37805"/>
          <exon e_start="38397" e_stop="38528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCCAACTTGATTAATGAAACCAAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGTTGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTGAACAATCTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGACACAGGTTTGTCAAAAATCATCAATCCTATTTCTTGAGATTACTCAAATTTAAAAAAGTCTTACTTTTTTCTTTTCTTTCAGAAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGGGTATTCTACTAATTTTCTTCTCTGTTTTATTGTTATCAAATTTGGGGAAAATTTAACTTGTGAACTGAAATGCAGAATTTGTTTGGTGCAAGCTGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAGGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAGGTGAGGCTTCGCCAACTCCTAATTTCTTCTTCGATTTATATACAGTGTTTATGGCAACATAGTTTACCATTCATTATCATTAGGTTTACTAATTAATGCTATAGAAATTAAGCTCACTTTTGTGCATAGTTAGGGGTTTCCACTTTCCAGTATCTAAATCATTCTTTAATATGTGCAAAAAAGTTGCTTTCTTCTGTTGCAAACCTAAATAGTTTCTCGTCTTCAATATAGTGGCAGACCCAGAATTTGTAGGTTATTTGCTCTTAATCACAGAAGGTGCTCGTGAATCTATTTTGGTGTAAATGCTAGTTTCCTATTAAAAATATAGTGATCGTGTAAAGAACAATGTGTGCTTGAGCATACAGTAGTGTACATGTAGGTCTGCCATTGCTTGAGTATTTGTTTAAACTTAATAGATATGCTCACAATTGTGTGACGGAGGACAATTAAAAAATTACTGATCTGTGTTCTCTTATATGTGGTATTGACACTAGCACTATGTCTTTTTTTCTAGTAAAAGTGGTACTATGTTAGATCATAAGTTTCAGTTGTAACTAGTTGTTCATTCTTTCAGTCTTTTGACATTTTTAGGATGGAGAAGTTAGATATAACAAAGGCCAGCAGTCAAGCAAAATCTGTGGGCACCGTAGTGGCAATTATGGGGGCATCCATCATGACATTATACAAAGGACCAAGGGTACTAGGATCAAATTTACCTTCTGA</genome_strand>
        <mrna_strand>AGGGTCCAACTTGATTAATGAAACCAAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGTTGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTGAACAATCTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGACACAG.............................................................................AAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGG...........................................................................AATTTGTTTGGTGCAAGCTGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAGGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGTTAGATATAACAAAGGCCAGCAGTCAAGCAAAATCTGTGGGCACCGTAGTGGCAATTATGGGGGCATCCATCATGACATTATACAAAGGACCAAGGGTACTAGGATCAAATTTACCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473862" ref_strand="+" ref_description="SGN-E473862 [cSTB-34-A21]">
      <seq>cttgtttatgttgtttactataatgcccttggtaccctttttcttcttccttgcttaatcttccataggctcagaagcaatatggttcctattactttgcctatattgtggagattcttccttcttggcctgttgggaatttgtttggtgcaagccgtggcctttacaggtattaagtacagcactcctacactggcagctgctttaaggaatttgatgccaggttttacatttttgcttgccatcattttcaggatggagaagttagatataagaaaggccagcagtcaagcgaaatctgtgggcaccatagtggcaattataggggcatccatcatgacactatacaaaggaccgagagtactangatcaaanttaccttctgattcatctcatcacgagttagtactttcacaagaatcaaactggatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="37100" stop="38877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37400" g_stop="37473" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37474" i_stop="37550" i_length="77">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37551" g_stop="37613" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="137" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37614" i_stop="37688" i_length="75">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37689" g_stop="37805" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="254" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37806" i_stop="38396" i_length="591">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38397" g_stop="38577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="435" r_length="181" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E473862" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37400" e_stop="37473"/>
          <exon e_start="37551" e_stop="37613"/>
          <exon e_start="37689" e_stop="37805"/>
          <exon e_start="38397" e_stop="38577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGACACAGGTTTGTCAAAAATCATCAATCCTATTTCTTGAGATTACTCAAATTTAAAAAAGTCTTACTTTTTTCTTTTCTTTCAGAAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGGGTATTCTACTAATTTTCTTCTCTGTTTTATTGTTATCAAATTTGGGGAAAATTTAACTTGTGAACTGAAATGCAGAATTTGTTTGGTGCAAGCTGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAGGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAGGTGAGGCTTCGCCAACTCCTAATTTCTTCTTCGATTTATATACAGTGTTTATGGCAACATAGTTTACCATTCATTATCATTAGGTTTACTAATTAATGCTATAGAAATTAAGCTCACTTTTGTGCATAGTTAGGGGTTTCCACTTTCCAGTATCTAAATCATTCTTTAATATGTGCAAAAAAGTTGCTTTCTTCTGTTGCAAACCTAAATAGTTTCTCGTCTTCAATATAGTGGCAGACCCAGAATTTGTAGGTTATTTGCTCTTAATCACAGAAGGTGCTCGTGAATCTATTTTGGTGTAAATGCTAGTTTCCTATTAAAAATATAGTGATCGTGTAAAGAACAATGTGTGCTTGAGCATACAGTAGTGTACATGTAGGTCTGCCATTGCTTGAGTATTTGTTTAAACTTAATAGATATGCTCACAATTGTGTGACGGAGGACAATTAAAAAATTACTGATCTGTGTTCTCTTATATGTGGTATTGACACTAGCACTATGTCTTTTTTTCTAGTAAAAGTGGTACTATGTTAGATCATAAGTTTCAGTTGTAACTAGTTGTTCATTCTTTCAGTCTTTTGACATTTTTAGGATGGAGAAGTTAGATATAACAAAGGCCAGCAGTCAAGCAAAATCTGTGGGCACCGTAGTGGCAATTATGGGGGCATCCATCATGACATTATACAAAGGACCAAGGGTACTAGGATCAAATTTACCTTCTGATTCATCCCATCACGAGTTAGTACTTTCACAAGAATCAAACTGGATATTG</genome_strand>
        <mrna_strand>CTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGGCTCAG.............................................................................AAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGG...........................................................................AATTTGTTTGGTGCAAGCCGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAAGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGTTAGATATAAGAAAGGCCAGCAGTCAAGCGAAATCTGTGGGCACCATAGTGGCAATTATAGGGGCATCCATCATGACACTATACAAAGGACCGAGAGTACTANGATCAAANTTACCTTCTGATTCATCTCATCACGAGTTAGTACTTTCACAAGAATCAAACTGGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443416" ref_strand="+" ref_description="SGN-E443416 [cSTA-37-F14]">
      <seq>attcaatgtgccaattttaacctctggccttagaaagccaatcccacaagacatggatggtgaagccctgggattgggatgatagccattgttttctcggcggtttctggaaatgtctttcgttaccaccgttttgacatggtgcttggataagaaaggtcctctttatgtagccatgttcaagcccttgggaatggtcatatcagcaatcctggggatcatattccttgcagatccactccatttaggaagtgttattggagcagttattatatctgctggattttattctgttctatgggggaaggctaaggagatcaagtccgtgcttgaggttgacgatattgtttgtgtaattgactcaacaaatcaaacatgccctctattgcacaagtaaattatagtaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="38744" stop="40187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39044" g_stop="39136" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39137" i_stop="39249" i_length="113">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.919" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39250" g_stop="39401" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="252" r_length="153" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39402" i_stop="39727" i_length="326">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39728" g_stop="39888" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="413" r_length="161" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E443416" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39044" e_stop="39136"/>
          <exon e_start="39250" e_stop="39401"/>
          <exon e_start="39728" e_stop="39888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATGTG-CAATTTTAA-CTCTGGCATTAGAAAG-CAAT-CCA-AAGACATGGATGGTGAAG-CCTGGGATTGGGATGATAGCCATTGTTTTCTCCGTAAGATATTTGATGCATTTTTCGTTTTCTGTCTCTTCTTCTCCTTGTTCTTTTTTTATATATAGATATATTATGTATGTGACTCATCGGTTATAAATCTTCTTGAACTCTAGGCGGTTTCCGGAAGTGTCTTCCGTTA-CAACGTTTTGACATGGTGCTTAGACAAGAAAGGTCCTCTTTATGTGGCCATGTTCAAGCCCTTGGGAATGGTCATATCAGCAATCCTGGGGATCATATTCCTTGCAGATCCACTCCATTTAGGAAGGTAATATATAGACAACGCCATCCTTCTACTCATGCTTATAGATCTTTAGTCAACTAGCTTTGTTGTTCAAAAATAGATTAATGCTTATTCCTAAGAATTAACCTTTAACCCCTTGTCTCTCTTTTCCCTGTATTACATACACCCTCCATTTGAATATATTTGACTGGATACAACGTTTAACAAGGAAAAAAAAATGGCTTTTGAAACGAGTGGTTTTAAACATGTGATAACATATTCCTTCTGATTTTGAAGAGCCCATAGCCAGCATTTTTCGGAAAAAGAACAACATTCATGTAGTGAATTATTTATTTGAATATTGTGTGCAGTGTTATTGGAGCAGTAATTATAACTGCTGGATTTTATTCTGTTCTGTGGGGGAAGGCTAAGGAGATCAAGTCCATGGTTGAAGTTGAGGACATTGTTTGTGTAATTGACTCAACAGATCAAACAAGCCCTCTATTGCACAAGTAACTTGTGGCAAGAAAAA</genome_strand>
        <mrna_strand>ATTCAATGTGCCAATTTTAACCTCTGGCCTTAGAAAGCCAATCCCACAAGACATGGATGGTGAAGCCCTGGGATTGGGATGATAGCCATTGTTTTCTCG.................................................................................................................GCGGTTTCTGGAAATGTCTTTCGTTACCACCGTTTTGACATGGTGCTTGGATAAGAAAGGTCCTCTTTATGTAGCCATGTTCAAGCCCTTGGGAATGGTCATATCAGCAATCCTGGGGATCATATTCCTTGCAGATCCACTCCATTTAGGAAG......................................................................................................................................................................................................................................................................................................................................TGTTATTGGAGCAGTTATTATATCTGCTGGATTTTATTCTGTTCTATGGGGGAAGGCTAAGGAGATCAAGTCCGTGCTTGAGGTTGACGATATTGTTTGTGTAATTGACTCAACAAATCAAACATGCCCTCTATTGCACAAGTAAATTATAGTAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208766" ref_strand="+" ref_description="SGN-E208766 [cLEC-51-O10]">
      <seq>ttcaatgtaggaccttaggaataaaaaaaaagtgtaaaaaatttcatctttaattttccctataaaacttagctaaaaaaacagttgcttcaatttcaatgtaagcttagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcgggtcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41602" stop="42809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41902" g_stop="42366" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42509" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="512" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E208766" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41902" e_stop="42366"/>
          <exon e_start="42463" e_stop="42509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCT</genome_strand>
        <mrna_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGGTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720091" ref_strand="+" ref_description="SGN-E720091 [FC09DB10]">
      <seq>gggcgattggcggccaatcggccgaattgaatttcaatgtaagcctatctgaaaaaaaaacagttactttaatcctggaccataacctatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41690" stop="44643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41993" g_stop="42366" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="403" r_length="374" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="469" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="583" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44343" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="803" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E720091" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41993" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCA</genome_strand>
        <mrna_strand>AATTTCAATGTAAGCCTATCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACCTATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212444" ref_strand="+" ref_description="SGN-E212444 [cLEC-74-H10]">
      <seq>ttagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41708" stop="43763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42008" g_stop="42366" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="425" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43463" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="492" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E212444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42008" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATC</genome_strand>
        <mrna_strand>TTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269575" ref_strand="+" ref_description="SGN-E269575 [cLEM-2-I22]">
      <seq>tagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41709" stop="43737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42009" g_stop="42366" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="424" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43437" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="465" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E269575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42009" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATG</genome_strand>
        <mrna_strand>TAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201955" ref_strand="+" ref_description="SGN-E201955 [cLEC-7-A6]">
      <seq>aaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgcttatagatatggacttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41719" stop="43731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42019" g_stop="42366" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="414" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43431" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="449" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E201955" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42019" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTA</genome_strand>
        <mrna_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGCTTATAGATATGGACTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294210" ref_strand="+" ref_description="SGN-E294210 [cLET-14-C7]">
      <seq>aaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagccataacagagagacaactttttacaaagaagtgctaccatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41719" stop="42516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42019" g_stop="42216" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E294210" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42019" e_stop="42216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGC</genome_strand>
        <mrna_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCCATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269480" ref_strand="+" ref_description="SGN-E269480 [cLEM-2-J11]">
      <seq>aacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41722" stop="44514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42022" g_stop="42366" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="411" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="525" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44214" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="616" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E269480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42022" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTG</genome_strand>
        <mrna_strand>AACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700389" ref_strand="+" ref_description="SGN-E700389 [FA12DH09]">
      <seq>gttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41726" stop="44952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42026" g_stop="42366" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="406" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="520" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44361" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="758" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44362" i_stop="44553" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44554" g_stop="44652" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="857" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E700389" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42026" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44361"/>
          <exon e_start="44554" e_stop="44652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAA</genome_strand>
        <mrna_strand>GTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATC-G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302910" ref_strand="+" ref_description="SGN-E302910 [cLEW-26-G18]">
      <seq>tggaccataaccatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgccgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaataccctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41739" stop="44449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42039" g_stop="42366" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="396" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="510" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44149" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="536" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E302910" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42039" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCATAA-CATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACG-CGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGAT</genome_strand>
        <mrna_strand>TGGACCATAACCATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACCCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305425" ref_strand="+" ref_description="SGN-E305425 [cLEX-15-G12]">
      <seq>cataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataacggggtataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41744" stop="43724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42044" g_stop="42366" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="389" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43424" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="417" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E305425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42044" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACA</genome_strand>
        <mrna_strand>CATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAACGGGGTATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334524" ref_strand="+" ref_description="SGN-E334524 [cTOD-23-B8]">
      <seq>taaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41785" stop="43810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42085" g_stop="42366" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="348" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="462" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E334524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42085" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG</genome_strand>
        <mrna_strand>TAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248557" ref_strand="+" ref_description="SGN-E248557 [cLEF-59-J24]">
      <seq>tcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41810" stop="44510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42110" g_stop="42366" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="323" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="437" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44210" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="524" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E248557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42110" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAAC</genome_strand>
        <mrna_strand>TCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345769" ref_strand="+" ref_description="SGN-E345769 [cTOF-18-K23]">
      <seq>gaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41828" stop="44930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42128" g_stop="42366" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="305" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="419" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44361" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="657" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44362" i_stop="44553" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44554" g_stop="44630" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="734" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E345769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42128" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44361"/>
          <exon e_start="44554" e_stop="44630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGC</genome_strand>
        <mrna_strand>GAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424130" ref_strand="+" ref_description="SGN-E424130 [STM-43-G15]">
      <seq>gggaaacacaaaaagttgaaatttttgaagcaaaaatgggaagcaataacaacagagagacaactttttacaaagaagtgctaccatttacagctatggtgactatggaatgtataaatgttggattaaatacactttacaaagctgctactaacaaaggcatgagtaatcatgtttttgttgtttatagttatggtcttgctgctcttctacttcttccttctcctttcttctctgccagatcaagaatacttccaccactcaattgctcaattctcgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctcctacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctatacaaaggcccaaaaatattagtgcctaccacgtccacacccaatttactacgtcaacctctcggctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttgactggtagcatcctagctggtattgtaggatttttatctgaacctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41868" stop="44958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42172" g_stop="42366" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="241" r_length="195" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.704" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="307" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="421" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44361" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="659" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44362" i_stop="44553" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44554" g_stop="44658" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="764" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E424130" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42172" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44361"/>
          <exon e_start="44554" e_stop="44658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGAC</genome_strand>
        <mrna_strand>TAACAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTACAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACACTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTTTTTGTTGTTTATAGTTATGGTCTTGCTGCTCTTCTACTTCTTCCTTCTCCTTTCTTCTCTGCCAG................................................................................................ATCAAGAATACTTCCACCACTCAATTGCTCAATTCTCGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCTACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTATACAAAGGCCCAAAAATATTAGTGCCTACCACGTCCACACCCAATTTACTACGTCAACCTCTCGGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTGACTGGTAGCATCCTAGCTGGTATTGTAGGATTTTTATCTGAACCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451763" ref_strand="+" ref_description="SGN-E451763 [cSTS-14-K15]">
      <seq>accacctttacaaagctgctactaaccaaaggcatgaagtaatcatgtttttgttgtttatagttatggtcttgctgctcttctacttcttccttctcctttcttctctgccagatcaagaatacttccaccactcaattgctcaattctcgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctcctacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtgggtgtccatagctggagcattcgtagtaactctatacaaaggcccaaaaatattagtgcctaccacgtccacacccaatttactacgtcaacctctcggctcatctcaatcgaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="41957" stop="44599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42254" g_stop="42366" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.704" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="180" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="294" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44299" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="471" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E451763" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42254" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACGCTTTACAAAGCTGCTACTAA-CAAAGGCATG-AGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGT-GGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGA</genome_strand>
        <mrna_strand>ACCAC-CTTTACAAAGCTGCTACTAACCAAAGGCATGAAGTAATCATGTTTTTGTTGTTTATAGTTATGGTCTTGCTGCTCTTCTACTTCTTCCTTCTCCTTTCTTCTCTGCCAG................................................................................................ATCAAGAATACTTCCACCACTCAATTGCTCAATTCTCGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCTACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTATACAAAGGCCCAAAAATATTAGTGCCTACCACGTCCACACCCAATTTACTACGTCAACCTCTCGGCTCATCTCAATCGAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215016" ref_strand="+" ref_description="SGN-E215016 [cLEC-78-I3]">
      <seq>tgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctggggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="42007" stop="45243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42307" g_stop="42366" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42463" g_stop="42528" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="126" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43397" g_stop="43510" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="240" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44124" g_stop="44361" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="478" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44362" i_stop="44553" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44554" g_stop="44712" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="637" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44713" i_stop="44817" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44818" g_stop="44943" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="764" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E215016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42307" e_stop="42366"/>
          <exon e_start="42463" e_stop="42528"/>
          <exon e_start="43397" e_stop="43510"/>
          <exon e_start="44124" e_stop="44361"/>
          <exon e_start="44554" e_stop="44712"/>
          <exon e_start="44818" e_stop="44943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCT-GGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTC</genome_strand>
        <mrna_strand>TGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398504" ref_strand="+" ref_description="SGN-E398504 [TUS-17-H8]">
      <seq>cagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctgggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctcttaggagatactctttatttgggaagcatcgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattctagtgatctcgagtcgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatctcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccatcttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacacctattctggaaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="44279" stop="45715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44579" g_stop="44712" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44713" i_stop="44817" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44818" g_stop="44969" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="286" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44970" i_stop="45051" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45052" g_stop="45415" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="650" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E398504" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44579" e_stop="44712"/>
          <exon e_start="44818" e_stop="44969"/>
          <exon e_start="45052" e_stop="45415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACT</genome_strand>
        <mrna_strand>CAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG..................................................................................CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACACCTATTCTGGAAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210342" ref_strand="+" ref_description="SGN-E210342 [cLEC-35-H11]">
      <seq>agaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctgggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctcttaggagatactctttatttgggaagcatcgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattctagtgatctcgagtcgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatctcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccatcttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacagctattctggaaaaatacttgttttactactgacattctatcattggatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="44280" stop="45753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44580" g_stop="44712" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44713" i_stop="44817" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44818" g_stop="44969" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="285" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44970" i_stop="45051" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45052" g_stop="45451" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="685" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E210342" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44580" e_stop="44712"/>
          <exon e_start="44818" e_stop="44969"/>
          <exon e_start="45052" e_stop="45451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATAT</genome_strand>
        <mrna_strand>AGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG..................................................................................CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTCTATCATTGGATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395767" ref_strand="+" ref_description="SGN-E395767 [TUS-17-H8](-)">
      <seq>gggaagcattgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattttagtgatctcgagttgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatttcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccattttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="44750" stop="45887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44964" g_stop="44969" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44970" i_stop="45051" i_length="82">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45052" g_stop="45586" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="541" r_length="535" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="555"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E395767" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44964" e_stop="44969"/>
          <exon e_start="45052" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</genome_strand>
        <mrna_strand>GGGAAG..................................................................................CATTGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTTTAGTGATCTCGAGTTGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATTTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATTTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208509" ref_strand="+" ref_description="SGN-E208509 [cLEC-39-E10]">
      <seq>ttacaagtgatattaatttctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51225" stop="52182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51525" g_stop="51669" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="51882" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="215" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E208509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51525" e_stop="51669"/>
          <exon e_start="51813" e_stop="51882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTG</genome_strand>
        <mrna_strand>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300716" ref_strand="+" ref_description="SGN-E300716 [cLEW-8-G12]">
      <seq>agtgatattaatttctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttgaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaacggcaccaaaagaagttgctaatgaatgcccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51230" stop="53423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51530" g_stop="51669" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="52076" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="404" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="554" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53079" g_stop="53123" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="599" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E300716" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51530" e_stop="51669"/>
          <exon e_start="51813" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</genome_strand>
        <mrna_strand>AGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAACGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406326" ref_strand="+" ref_description="SGN-E406326 [PPI-3-O14]">
      <seq>tattaatttctagtataaacaatgtcttttgttatgctcaagaaatctcttgctatcccctcttcgtaaattcatccacaaagacttccatgagaccttcgagaaaatgaccctcatcgataaattattttttctgattgttcattttattgataagtacaacttttggcaccggctaccggtgttctttgggctactttatcttggagcacggcggactcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggcgttcgatcaaatccggcagattacccttatagaactgctgatggaaaattcaatgacccttttaatgaaggagcaggcagtcaattttctttctttggcaggaatatgatgcctgttcatcaggataataagttaaagaagccagatccaatggtagtagcaacgaagcttctagcacgaaaaaaattcatagacacaggaaaacaattcaacatgatagctgcctcttggatacaatttatggttcatgattggatcgatcatttggaagacactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgccctctcaagtccttttaggtttaacaagtccaaggaaactcctacagatttttatgaaatcaaaaaaggtcacttgaacatccgtactccctggtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51235" stop="53513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51535" g_stop="51669" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="0.90"/>
            <acceptor a_prob="0.012" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="52076" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="400" r_length="264" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="550" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53079" g_stop="53212" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="685" r_length="135" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E406326" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51535" e_stop="51669"/>
          <exon e_start="51813" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAG-AATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCC-TTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG</genome_strand>
        <mrna_strand>TATTAATTTCTAGTATAAACAATGTCTTTTGTTATGCTCAAGAAATCTCTTGCTATCCCCTCTTCGTAAATTCATCCACAAAGACTTCCATGAGACCTTCGAGAAAATGACCCTCATCGATAAATTATTTTTTCTG...............................................................................................................................................ATTGTTCATTTTATTGATAAGTACAACTTTTGGCACCGGCTACCGGTGTTCTTTGGGCTACTTTATCTTGGAGCACGGCGGACTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGCGTTCGATCAAATCCGGCAGATTACCCTTATAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAGCAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTGTTCATCAGGATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAAAAAATTCATAGACACAGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGGTTCATGATTGGATCGATCATTTGGAAGACACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCTCTCAAGTCCTTTTAGGTTTAACAAGTCCAAGGAAACTCCTACAGATTTTTATGAAATCAAAAAAGGTCACTTGAACATCCGTACTCCCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420483" ref_strand="+" ref_description="SGN-E420483 [STM-31-E16]">
      <seq>tattaatttctagtataaacaatgtcttttgttatgctcaagaatctcttgctatcccctcttcgtaaattcatccacaaagatttccatgagatcttcgagaaaatgaccctcatcgataaattattttttctgattgttcattttattgataagtacaacttttggcaccggctaccggtgttctttgggctactttatcttggagcacggcggactcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggcgttcgatcaaatccggcagattacccttatagaactgctgatggaaaattcaatgacccttttaatgaaggagcaggcagtcaattttctttctttggcaggaatatgatgcctgttcatcaggataataagttaaagaagccagatccaatggtagtagcaacgaagcttctagcacgaaaaaaattcatagacacaggaaaacaattcaacatgatagctgcctcttggatacaatntatggttcatgattggatcgatcatttggaagacactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgccctctcaagtcctttaagtttaacaagtccaaagaaactccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51235" stop="53460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51535" g_stop="51669" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="0.92"/>
            <acceptor a_prob="0.012" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="52076" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="399" r_length="264" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="549" r_length="150" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53079" g_stop="53160" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E420483" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51535" e_stop="51669"/>
          <exon e_start="51813" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTA</genome_strand>
        <mrna_strand>TATTAATTTCTAGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCCCTCTTCGTAAATTCATCCACAAAGATTTCCATGAGATCTTCGAGAAAATGACCCTCATCGATAAATTATTTTTTCTG...............................................................................................................................................ATTGTTCATTTTATTGATAAGTACAACTTTTGGCACCGGCTACCGGTGTTCTTTGGGCTACTTTATCTTGGAGCACGGCGGACTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGCGTTCGATCAAATCCGGCAGATTACCCTTATAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAGCAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTGTTCATCAGGATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAAAAAATTCATAGACACAGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATNTATGGTTCATGATTGGATCGATCATTTGGAAGACACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCTCTCAAGTCCTTTAAGTTTAACAAGTCCAAAGAAACTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265065" ref_strand="+" ref_description="SGN-E265065 [cLEI-2-B11]">
      <seq>tctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51243" stop="53423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51543" g_stop="51669" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="52076" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="391" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="541" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53079" g_stop="53123" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="586" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E265065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51543" e_stop="51669"/>
          <exon e_start="51813" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</genome_strand>
        <mrna_strand>TCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747485" ref_strand="+" ref_description="SGN-E747485 [GI|37962658]">
      <seq>atgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaattgcaaaagttcacaccatagattggactgttcagcttctgaaaaccgatactatgcttgcaggaatgcgtgccaattggtatggattactaggaaagaagttcaaggatacatttggtcatgttggttccattttaagtggtgttgttggaatgaagaaacctgagaatcatggagtgccttattccttaactgaagaatttacgagtgtttatagaatgcatcaactgttacctgatacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatacaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcataatcctattccactctattttcgtgttcctcagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51256" stop="55437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51556" g_stop="51669" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="52076" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="378" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="528" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53079" g_stop="53212" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="662" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53322" g_stop="53535" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="876" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53698" g_stop="53843" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1022" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53930" g_stop="54154" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1023" r_stop="1247" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54243" g_stop="54445" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1450" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54588" g_stop="54831" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1451" r_stop="1694" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54912" g_stop="55137" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1695" r_stop="1920" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E747485" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51556" e_stop="51669"/>
          <exon e_start="51813" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53212"/>
          <exon e_start="53322" e_stop="53535"/>
          <exon e_start="53698" e_stop="53843"/>
          <exon e_start="53930" e_stop="54154"/>
          <exon e_start="54243" e_stop="54445"/>
          <exon e_start="54588" e_stop="54831"/>
          <exon e_start="54912" e_stop="55137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTTAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAG</genome_strand>
        <mrna_strand>ATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATACAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204599" ref_strand="+" ref_description="SGN-E204599 [cLEC-14-E17]">
      <seq>tttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51318" stop="53697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51618" g_stop="51669" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51813" g_stop="52076" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="316" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="466" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53079" g_stop="53212" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="600" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53322" g_stop="53397" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="676" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E204599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51618" e_stop="51669"/>
          <exon e_start="51813" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53212"/>
          <exon e_start="53322" e_stop="53397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAA</genome_strand>
        <mrna_strand>TTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209676" ref_strand="+" ref_description="SGN-E209676 [cLEC-54-J4]">
      <seq>tcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="51647" stop="53699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51947" g_stop="52076" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52671" g_stop="52820" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="280" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53079" g_stop="53212" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="414" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53322" g_stop="53399" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="492" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E209676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51947" e_stop="52076"/>
          <exon e_start="52671" e_stop="52820"/>
          <exon e_start="53079" e_stop="53212"/>
          <exon e_start="53322" e_stop="53399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATT</genome_strand>
        <mrna_strand>TCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212600" ref_strand="+" ref_description="SGN-E212600 [cLEC-74-H4]">
      <seq>aagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="52369" stop="54065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52668" g_stop="52820" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53079" g_stop="53212" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="287" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53322" g_stop="53535" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="501" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53698" g_stop="53765" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="569" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E212600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52668" e_stop="52820"/>
          <exon e_start="53079" e_stop="53212"/>
          <exon e_start="53322" e_stop="53535"/>
          <exon e_start="53698" e_stop="53765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTTAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAAT</genome_strand>
        <mrna_strand>AAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213405" ref_strand="+" ref_description="SGN-E213405 [cLEC-71-I22]">
      <seq>tcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaattgcaaaagttcacaccatagattggactgttcagcttctgaaaaccgatactatgcttgcaggaatgcgtgccaattggtatggattactaggaaagaagttcaaggatacatttggtcatgttggttccattttaagtggtgttgttggaatgaagaaacctgagaatcatggagtgccttattccttaactgaagaatttacgagtgtttatagaatgcatcaactgttacctgatacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatncagctagtggagctcttgagctttggaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="52886" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53186" g_stop="53212" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53322" g_stop="53535" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="241" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53698" g_stop="53843" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="387" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53930" g_stop="54154" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="612" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54243" g_stop="54364" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="734" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E213405" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53186" e_stop="53212"/>
          <exon e_start="53322" e_stop="53535"/>
          <exon e_start="53698" e_stop="53843"/>
          <exon e_start="53930" e_stop="54154"/>
          <exon e_start="54243" e_stop="54364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTTAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATC</genome_strand>
        <mrna_strand>TCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATNCAGCTAGTGGAGCTCTTGAGCTTTGGAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432702" ref_strand="+" ref_description="SGN-E432702 [STM-57-M22]">
      <seq>ttttaacactacaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtcattgcaaaagttcacacaatagattggactgttcagcttctaaaaaccgatactttgcttgctggaatgcgtgccaattggtatggattactaggaaagaaattcaaggatacatttgggcatgttggttccattttaagtggtgttgttggaatgaaaaaacctgagaatcatggagtgccttattccctaactgaagaattcgtgtgtgtttatagaatgcatcaactcttacctgatacacttcagctaagaaatatagatgccacgcctggaccaaacaaatctctccctttgactattgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatgggccaccaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaactgataggccacatcatattgaccttgcagcccttgaaatttatagagatagagaaagaagtgttgctaggtacaatgactttcgaagaggaatgctacaaattcctatttcgaaatgggaagatttgacggatgatgaagaangcatcaaaacacttcgtgaagtatatgatgatgatgtagaagagttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53177" stop="55041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53477" g_stop="53535" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53698" g_stop="53843" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="205" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53930" g_stop="54154" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="430" r_length="225" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54243" g_stop="54445" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="633" r_length="203" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54588" g_stop="54741" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="787" r_length="154" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E432702" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53477" e_stop="53535"/>
          <exon e_start="53698" e_stop="53843"/>
          <exon e_start="53930" e_stop="54154"/>
          <exon e_start="54243" e_stop="54445"/>
          <exon e_start="54588" e_stop="54741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTTAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGA</genome_strand>
        <mrna_strand>TTTTAACACTACAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTCATTGCAAAAGTTCACACAATAGATTGGACTGTTCAGCTTCTAAAAACCGATACTTTGCTTGCTGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAATTCAAGGATACATTTGGGCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAAAAACCTGAGAATCATGGAGTGCCTTATTCCCTAACTGAAGAATTCGTGTGTGTTTATAGAATGCATCAACTCTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGACCAAACAAATCTCTCCCTTTGACTATTGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGCCACCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACTGATAGGCCACATCATATTGACCTTGCAGCCCTTGAAA..............................................................................................................................................TTTATAGAGATAGAGAAAGAAGTGTTGCTAGGTACAATGACTTTCGAAGAGGAATGCTACAAATTCCTATTTCGAAATGGGAAGATTTGACGGATGATGAAGAANGCATCAAAACACTTCGTGAAGTATATGATGATGATGTAGAAGAGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402001" ref_strand="+" ref_description="SGN-E402001 [PPC-5-P24]">
      <seq>ttttaacactacaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtcattgcaaaagttcacacaatagattggactgttcagcttctaaaaaccgatactttgcttgctggaatgcgtgccaattggtatggattactaggaaagaaattcaaggatacatttgggcatgttggttccattttaagtggtgttgttggaatgaaaaaacctgagaatcatggagtgccttattccctaactgaagaattcgtgtgtgtttatagaatgcatcaactcttacctgatacacttcagctaagaaatatagatgccacgcctggaccaaacaaatctctccctttgactattgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatgggccaccaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaactgataggccacatcatattgaccttgcagcccttgaaatttatagagatagagaaagaagtgttgctaggtacaatgactttcgaagaggaatgctacaaattcctatttcgaaatgggaagatttgacggatgatgaaagagcaatcaaaacacttcgtgaagtatatgatgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53177" stop="55029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53477" g_stop="53535" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53698" g_stop="53843" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="205" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53930" g_stop="54154" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="430" r_length="225" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54243" g_stop="54445" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="633" r_length="203" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54588" g_stop="54729" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="775" r_length="142" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E402001" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53477" e_stop="53535"/>
          <exon e_start="53698" e_stop="53843"/>
          <exon e_start="53930" e_stop="54154"/>
          <exon e_start="54243" e_stop="54445"/>
          <exon e_start="54588" e_stop="54729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTTAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATAT</genome_strand>
        <mrna_strand>TTTTAACACTACAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTCATTGCAAAAGTTCACACAATAGATTGGACTGTTCAGCTTCTAAAAACCGATACTTTGCTTGCTGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAATTCAAGGATACATTTGGGCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAAAAACCTGAGAATCATGGAGTGCCTTATTCCCTAACTGAAGAATTCGTGTGTGTTTATAGAATGCATCAACTCTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGACCAAACAAATCTCTCCCTTTGACTATTGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGCCACCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACTGATAGGCCACATCATATTGACCTTGCAGCCCTTGAAA..............................................................................................................................................TTTATAGAGATAGAGAAAGAAGTGTTGCTAGGTACAATGACTTTCGAAGAGGAATGCTACAAATTCCTATTTCGAAATGGGAAGATTTGACGGATGATGAAAGAGCAATCAAAACACTTCGTGAAGTATATGATGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379252" ref_strand="+" ref_description="SGN-E379252 [TUS-3-C4]">
      <seq>tacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagaagtttaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaacagtgccttctctgtttgggattcttctccacacctcataatctattccctctattttcgtgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53789" stop="55431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54089" g_stop="54154" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54243" g_stop="54445" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="269" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54588" g_stop="54831" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="513" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54912" g_stop="55131" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="729" r_length="216" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E379252" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54089" e_stop="54154"/>
          <exon e_start="54243" e_stop="54445"/>
          <exon e_start="54588" e_stop="54831"/>
          <exon e_start="54912" e_stop="55131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCT</genome_strand>
        <mrna_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAAGTTTAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTC-AACAGTGCCTTCTCTGTTTGGGATTCTTCTCCAC-ACCTCATAAT-CTATTCC-CTCTATTTTCGTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376457" ref_strand="+" ref_description="SGN-E376457 [TUS-17-H9]">
      <seq>tacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcatttatccaaaatgactgataaatggatgaattcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53789" stop="55363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54089" g_stop="54154" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54243" g_stop="54445" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="269" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54588" g_stop="54831" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="513" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54912" g_stop="55063" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="665" r_length="152" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E376457" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54089" e_stop="54154"/>
          <exon e_start="54243" e_stop="54445"/>
          <exon e_start="54588" e_stop="54831"/>
          <exon e_start="54912" e_stop="55063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCA-TTATCCAGAAATGACTGATAAATGGATGAATTCAAACA</genome_strand>
        <mrna_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTTATCCA-AAATGACTGATAAATGGATGAATTCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210557" ref_strand="+" ref_description="SGN-E210557 [cLEC-35-H12]">
      <seq>tacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53789" stop="54986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54089" g_stop="54154" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54243" g_stop="54445" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="269" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54588" g_stop="54686" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="368" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E210557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54089" e_stop="54154"/>
          <exon e_start="54243" e_stop="54445"/>
          <exon e_start="54588" e_stop="54686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATG</genome_strand>
        <mrna_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432703" ref_strand="-" ref_description="SGN-E432703 [STM-57-M22]">
      <seq>aagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatgggccaccaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaactgataggccacatcatattgaccttgcagcccttgaaatttatagagatagagaaagaagtgttgctaggtacaatgactttcgaagaggaatgctacaaattcctatttcgaaatgggaagatttgacggatgatgaagaagcaatcaaaacacttcgtgaagtatatgatgatgatgtagaagagttggatttattagtgggactcatggcggagaaaaagattaaaggatttgccatttcagaaactgcatttaacatattccttctcatggcaataaggaggttagaggcagatagatttttcacgagcaactataacgaggagacgtatacaaagaaaggattggaatgggtgaatactactgaaggtttaaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgcattttctgtttgggactcttctccagaacctcacaatcctattccactctattttcgtgttcctcagtagtagacctcaaaatcatgtgtgtaactatttattaatactgtaatacgtacaagtttgtatttaaggtgtctttttctatatcatcaaaaaaaaaaaaaaaaaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53957" stop="55533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54257" g_stop="54445" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54588" g_stop="54831" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="433" r_length="244" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54912" g_stop="55225" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="747" r_length="314" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="768"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E432703" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432703" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54257" e_stop="54445"/>
          <exon e_start="54588" e_stop="54831"/>
          <exon e_start="54912" e_stop="55225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAA</genome_strand>
        <mrna_strand>AAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGCCACCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACTGATAGGCCACATCATATTGACCTTGCAGCCCTTGAAA..............................................................................................................................................TTTATAGAGATAGAGAAAGAAGTGTTGCTAGGTACAATGACTTTCGAAGAGGAATGCTACAAATTCCTATTTCGAAATGGGAAGATTTGACGGATGATGAAGAAGCAATCAAAACACTTCGTGAAGTATATGATGATGATGTAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAGATTAAAGGATTTGCCATTTCAGAAACTGCATTTAACATATTCCTTCTCATGGCAATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACGAGCAACTATAACGAGGAGACGTATACAAAGAAAGGATTGGAATGGGTGAATACTACTGAAGGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCATTTTCTGTTTGGGACTCTTCTCCAGAACCTCACAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACTGTAATACGTACAAGTTTGTATTTAAGGTGTCTTTTTCTATATCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379408" ref_strand="+" ref_description="SGN-E379408 [TUS-3-C4](-)">
      <seq>gaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcataatcctattccactctattttcgtgttcctcagtagtagacctcaaaatcatgtgtgtaactatttattaataccgtaatacgtacaagtttgtatttaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="53982" stop="55503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54282" g_stop="54445" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54588" g_stop="54831" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="408" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54912" g_stop="55203" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="700" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E379408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54282" e_stop="54445"/>
          <exon e_start="54588" e_stop="54831"/>
          <exon e_start="54912" e_stop="55203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGG</genome_strand>
        <mrna_strand>GAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376456" ref_strand="+" ref_description="SGN-E376456 [TUS-17-H9](-)">
      <seq>aaaaaaaaagtgttcctaggtacaatgactttaaaaaaagaaagcttcaaattcctatttcgaaatgggaaaatttgacaaataataaaaaagcaatcaaaacacttggttaagtatatgatgatgatataaaaaagttggatttattagtgggactcatggcggaaaaaaaaattaaaggatttgccatttcaaaaacagccttcaacatattccttttcatggctataaggaggttaaaggcaaataaatttttcccaagcaatttcaacgatgagacatacacaaaaaaaggattagaatgggtgaatactactgaaagtttaaaaaatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttttctgtttgggatttttttccccaacctcataatcctattcccctctattttcgtgttcctcagtagtagacctcaaaatcatgtgtgtaactatttattaataccgtaatacgtacaagtttgtatttaaggtgtcttgttttatttcatcaaaataatatattgtatcttggtctgtgaaaataactattagttagtaattcgtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="54301" stop="86200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54600" g_stop="54831" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54912" g_stop="55279" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="600" r_length="368" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55280" i_stop="56106" i_length="827">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56107" g_stop="56137" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="631" r_length="31" r_score="0.645"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E376456" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54600" e_stop="54831"/>
          <exon e_start="54912" e_stop="55279"/>
          <exon e_start="56107" e_stop="56137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATTATATATAGATCATGCAATGTCTTATTACTAAATCGTCGAGGAGATATAGCAATCCTATATATGGACCAGCTTGTTGTATGGAAAAGGCTGAATTCATCCGCAGACCCCTTTTCACTTAGACATTTCAAATAGGCTTTGTTCAGTTTAAGTATCTCAAATAGGGTTTGCTATGCCATTTTGACACCTTGTTGACAATCAACATATTTGCGGGTGACATGTCATGATGACTAATTAAAAGCTGACATGTGGTATTTGAATGTAAAAATAATAATTTTAAAATAAATTACTAAAAAAACAACTAATTTTTCAGCAAAAATAAATAATAAAATTACCTATTTTCTACCATCTCACTCCACCCTATATCACCCCACCCCTATCCCGTCTGCCTTACGTCCCTTTTACCTCCCCAACTCTACGACCATTCTCTTGGTTCTTCTTCCATTTTTTTTTTAAAAATCATTAGATTTTAGGTTTTTTTTAATTGATTTTGAAAATTATATATGACATTCCTCTAATTTTTTTTTGTGAAAAAAATGTGGTCTTCTTCTAAAAAATCTTTTCAAAATTAGTGTGATGATTTTTAAAATTTTTGTTCTTATATAAACGTTTTTAAAATTAGTATGATAGATTTTTATTTTATTTTTCATATTTTGTAATGTTCTTTTATCATGAATTTTAATGGGGTAAGGTGGAATAAGTGGTAGGGCTAAAAAGTGAAGAAGAAGAATAAATTTTTTTTAAACGTCCAAAAATTAATCCTCACGCACTCAAAATGGATACATCACACACAATATGTCAAGTTAGCAAAAAGTATCAAAATGGCATAGCAAAAATCAACATGAAATATCTAAAATAAAA</genome_strand>
        <mrna_strand>AAAAAAAAAGTGTTCCTAGGTACAATGACTTTAAAAAAAGAAAGCTTCAAATTCCTATTTCGAAATGGGAAAATTTGACAAATAATAAAAAAGCAATCAAAACACTTGGTTAAGTATATGATGATGATATAAAAAAGTTGGATTTATTAGTGGGACTCATGGCGGAAAAAAAAATTAAAGGATTTGCCATTTCAAAAACAGCCTTCAACATATTCCTTTTCATGGCTATAAG................................................................................GAGGTTAAAGGCAAATAAATTTTTCCCAAGCAATTTCAACGATGAGACATACACAAAAAAAGGATTAGAATGGGTGAATACTACTGAAAGTTTAAAAAATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTTTCTGTTTGGGATTTTTTTCCCCAACCTCATAATCCTATTCCCCTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTTTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420484" ref_strand="-" ref_description="SGN-E420484 [STM-31-E16]">
      <seq>atgatgaagaagcaatcaaaacccttcgtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaagattaaaggatttgccatttcagaaactgcgttcaacatattccttctcatggctataaggaggttagaggcagacagatttttcacgagtaactataacgaggagacgtatacaaagaaaggattggaatgggtgaatactactgaaggtttgaaagatgtgttagatcgtcactatccagaaatgactgaaaaatggatgaattcaaacagtgcattttctgtttgggactcttctccacaacctcacaatcctattccactctattttcgtgttcctcagtagtagacctcaaaatcaagtgtgtaacttgggattaaaaccgtaatatgtacaagtttgtatttaaggtgtcttgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="54381" stop="55514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54681" g_stop="54831" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54912" g_stop="55214" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="454" r_length="303" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E420484" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54681" e_stop="54831"/>
          <exon e_start="54912" e_stop="55214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCT</genome_strand>
        <mrna_strand>ATGATGAAGAAGCAATCAAAACCCTTCGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAGATTAAAGGATTTGCCATTTCAGAAACTGCGTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGACAGATTTTTCACGAGTAACTATAACGAGGAGACGTATACAAAGAAAGGATTGGAATGGGTGAATACTACTGAAGGTTTGAAAGATGTGTTAGATCGTCACTATCCAGAAATGACTGAAAAATGGATGAATTCAAACAGTGCATTTTCTGTTTGGGACTCTTCTCCACAACCTCACAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCAAGTGTGTAACTTGGGATTAAAACCGTAATATGTACAAGTTTGTATTTAAGGTGTCTTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302942" ref_strand="+" ref_description="SGN-E302942 [cLEW-26-H11]">
      <seq>gaggattttaattactatcatatatatatatataaagtaggaaacatgactatgattatgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="63655" stop="65039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63951" g_stop="64109" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64110" i_stop="64365" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64366" g_stop="64510" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="304" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64603" g_stop="64739" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="441" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E302942" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63951" e_stop="64109"/>
          <exon e_start="64366" e_stop="64510"/>
          <exon e_start="64603" e_stop="64739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGA</genome_strand>
        <mrna_strand>GAGGATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG................................................................................................................................................................................................................................................................AACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542907" ref_strand="+" ref_description="SGN-E542907 [TUS-64-H5]">
      <seq>attttaattactatcatatatatatatataaagtaggaaacatgactatgattatgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttggaagatactcaacaggtataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="63655" stop="65059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63955" g_stop="64109" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64110" i_stop="64365" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64366" g_stop="64510" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="300" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64603" g_stop="64759" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="457" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E542907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63955" e_stop="64109"/>
          <exon e_start="64366" e_stop="64510"/>
          <exon e_start="64603" e_stop="64759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAAT</genome_strand>
        <mrna_strand>ATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG................................................................................................................................................................................................................................................................AACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747484" ref_strand="+" ref_description="SGN-E747484 [GI|37962660]">
      <seq>atgactatgattatgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgatagttcatatcattgataaacataacttgtggcaccgggtaccggtgtttttagggctagtttatcttgcacttcgtcgacatcttaatcaggaatataatttgatcaacgtgggtagaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttggaagatactcaacagattgaggagcttagggcacctgaagaagttgcaagtcaatgtcctctcaagtcctttaagttttacaaatcaaaagaaactcctaccggattttacgaaattaaaaccggtcatttgaataggcgtaccccttggtgggatggaagtgttatttatgggagcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaatttatagagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="63696" stop="66977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63996" g_stop="64109" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64110" i_stop="64246" i_length="137">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64247" g_stop="64510" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="378" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64603" g_stop="64752" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="528" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64753" i_stop="64819" i_length="67">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64820" g_stop="64956" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="665" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64957" i_stop="65046" i_length="90">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65047" g_stop="65260" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="879" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="880" r_stop="1025" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65551" g_stop="65778" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1253" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65854" g_stop="66056" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1254" r_stop="1456" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66057" i_stop="66126" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66127" g_stop="66370" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1457" r_stop="1700" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66449" g_stop="66677" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1701" r_stop="1929" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E747484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1929</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63996" e_stop="64109"/>
          <exon e_start="64247" e_stop="64510"/>
          <exon e_start="64603" e_stop="64752"/>
          <exon e_start="64820" e_stop="64956"/>
          <exon e_start="65047" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65778"/>
          <exon e_start="65854" e_stop="66056"/>
          <exon e_start="66127" e_stop="66370"/>
          <exon e_start="66449" e_stop="66677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAATTCACAATTTAATTAATAATGACAAAGTTTTGTTAATTGTAACCATAAATTTTGAGTACAGATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTGGTAATAAGAATATTTTCCACAAAATATAGTATTATACTAATATGTGTATTTAAACGTTAAGTAATTTGTGTGTGTACAATACATGAAAAGGGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACAGAATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAA</genome_strand>
        <mrna_strand>ATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG.........................................................................................................................................ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG...................................................................ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG..........................................................................................GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA...........................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA......................................................................TTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576657" ref_strand="+" ref_description="SGN-E576657 [59910]">
      <seq>gcctcttgggatacaatttatgattcatgattggatcgatcatttagaagatacgcaacagattgaggagcttagggcacctgaagaagttgcaagtcaatgtcctctcaagtcctttaagttttacaaatcaaaagaaactcctaccggcttttacgaaattaaaaccggttacttgaataggcgtaccccttggtgggatggaagtgctatttatgggagcgacgtagagatcttaaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaatcatctctggtgatgttcgcaacacttgggctggacttttgtcactgcaggcgctctttgtacaagagcataatcttgtttgtgatgccttgaagaaagaatatccagaattgaaggatgaggacttgtatcttcatgcaagactggtgacttctgctgttatagcaaaagttcacaccatagattggactgtggagcttctcaaaacggacaccttattagcagcaatgcgggccaattggttaatatatattctcatacaaattagttatttctaactttgtacttaattaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="52461" stop="65792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64693" g_stop="64752" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64753" i_stop="64819" i_length="67">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64820" g_stop="64956" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="198" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64957" i_stop="65046" i_length="90">
            <donor d_prob="0.884" d_score="0.94"/>
            <acceptor a_prob="0.906" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65047" g_stop="65260" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="412" r_length="214" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65326" g_stop="65531" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="616" r_length="204" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E576657" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64693" e_stop="64752"/>
          <exon e_start="64820" e_stop="64956"/>
          <exon e_start="65047" e_stop="65260"/>
          <exon e_start="65326" e_stop="65531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCAT-GGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAATTCACAATTTAATTAATAATGACAAAGTTTTGTTAATTGTAACCATAAATTTTGAGTACAGATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTGGTAATAAGAATATTTTCCACAAAATATAGTATTATACTAATATGTGTATTTAAACGTTAAGTAATTTGTGTGTGTACAATACATGAAAAGGGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTT-TTTTTAGCTACTTAATTATTAATG</genome_strand>
        <mrna_strand>GCCTCTTGGGATACAATTTATGATTCATGATTGGATCGATCATTTAGAAGATACGCAACAG...................................................................ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGCTTTTACGAAATTAAAACCGGTTACTTGAATAGGCGTACCCCTTGGTG..........................................................................................GGATGGAAGTGCTATTTATGGGAGCGACGTAGAGATCTTAAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATCATCTCTGGTGATGTTCGCAACACTTGGGCTGGACTTTTGTCACTGCAGGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGCCTTGAAG.................................................................AAAGAATATCCAGAATTGAAGGATGAGGACTTGTATCTTCATGCAAGACTGGTGACTTCTGCTGTTATAGCAAAAGTTCACACCATAGATTGGACTGTGGAGCTTCTCAAAACGGACACCTTATTAGCAGCAATGCGGGCCAATTGGTTAATA-TA--TATTCTCATACAAATTAGTTATTTCTAACTTTGTACTTAATTAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544307" ref_strand="+" ref_description="SGN-E544307 [TUS-66-J4]">
      <seq>gagcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64768" stop="66356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65068" g_stop="65260" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="339" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65551" g_stop="65778" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="567" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65854" g_stop="66056" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="770" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E544307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65068" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65778"/>
          <exon e_start="65854" e_stop="66056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACAGAATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA</genome_strand>
        <mrna_strand>GAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA...........................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306036" ref_strand="+" ref_description="SGN-E306036 [cLEY-13-A23]">
      <seq>agcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64769" stop="66038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65069" g_stop="65260" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="338" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65551" g_stop="65738" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="526" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E306036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65069" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATG</genome_strand>
        <mrna_strand>AGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308069" ref_strand="+" ref_description="SGN-E308069 [cLEY-14-D10]">
      <seq>ttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64842" stop="66281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65142" g_stop="65260" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="265" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65551" g_stop="65778" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="493" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65854" g_stop="65981" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="621" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E308069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65142" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65778"/>
          <exon e_start="65854" e_stop="65981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACAGAATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATAT</genome_strand>
        <mrna_strand>TTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA...........................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308070" ref_strand="+" ref_description="SGN-E308070 [cLEY-14-D12]">
      <seq>aaaatggaaaaattatatctggagatgtccgcaatactggggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccacaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggagcaattttgggtggtttagtatgactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatctgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaangacaagagaatttatcaagaatcggatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64854" stop="66218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65154" g_stop="65260" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="253" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65551" g_stop="65778" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="481" r_length="228" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65854" g_stop="65918" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="546" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E308070" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65154" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65778"/>
          <exon e_start="65854" e_stop="65918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACAGAATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTA</genome_strand>
        <mrna_strand>AAAATGGAAAAATTATATCTGGAGATGTCCGCAATACTGGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCACAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGAGCAATTTTGGGTGGTTTAGTATGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATCTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA...........................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAANGACAAGAGAATTTATCAAGAATCGGATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544037" ref_strand="+" ref_description="SGN-E544037 [TUS-66-C15]">
      <seq>ggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaaagacagagaaagaagtgttgctaggtacaatgaatttcgaaagagaatgttgcaaattcccatcactaaatgggaagatttgnacgatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64894" stop="66568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65194" g_stop="65260" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="213" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65551" g_stop="65778" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="441" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65854" g_stop="66056" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="644" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66057" i_stop="66133" i_length="77">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.014" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66134" g_stop="66268" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="779" r_length="135" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E544037" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65194" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65778"/>
          <exon e_start="65854" e_stop="66056"/>
          <exon e_start="66134" e_stop="66268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACAGAATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGT</genome_strand>
        <mrna_strand>GGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA...........................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA.............................................................................AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAAGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGNACGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302764" ref_strand="+" ref_description="SGN-E302764 [cLEY-1-K9]">
      <seq>gctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64895" stop="66058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65195" g_stop="65260" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65326" g_stop="65471" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="212" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65551" g_stop="65758" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="420" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E302764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65195" e_stop="65260"/>
          <exon e_start="65326" e_stop="65471"/>
          <exon e_start="65551" e_stop="65758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAA</genome_strand>
        <mrna_strand>GCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544036" ref_strand="+" ref_description="SGN-E544036 [TUS-66-C15](-)">
      <seq>gatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaaagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtgtatctatctatctttatttaatgtttctgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="65623" stop="67122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65923" g_stop="66056" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66057" i_stop="66133" i_length="77">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.014" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66134" g_stop="66370" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="371" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66449" g_stop="66827" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="749" r_length="378" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E544036" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65923" e_stop="66056"/>
          <exon e_start="66134" e_stop="66370"/>
          <exon e_start="66449" e_stop="66827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTA</genome_strand>
        <mrna_strand>GATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA.............................................................................AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTC-TGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542906" ref_strand="+" ref_description="SGN-E542906 [TUS-64-H5](-)">
      <seq>atagagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgattatggaagttattaaaacccttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="65830" stop="67001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66130" g_stop="66370" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66449" g_stop="66701" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="495" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E542906" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66130" e_stop="66370"/>
          <exon e_start="66449" e_stop="66701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGA-TATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTAC</genome_strand>
        <mrna_strand>ATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATTATGGAAGTTATTAAAACCCTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544306" ref_strand="+" ref_description="SGN-E544306 [TUS-66-J4](-)">
      <seq>tcatgaagtttatggtgatgatgtagaacaattggatctgttagtggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtgtatctatctatctttatttaatgtttcttgataagataattgtaatctttatattttatgtataatgttcttgtgttactcttcttatttaacgtcaaaaaactttttttttatatcaaaaaaaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="65945" stop="67205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66245" g_stop="66370" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66449" g_stop="66904" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="580" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E544306" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66245" e_stop="66370"/>
          <exon e_start="66449" e_stop="66904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</genome_strand>
        <mrna_strand>TCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAG-TGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAAC-TTTTTTTTTATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302765" ref_strand="+" ref_description="SGN-E302765 [cLEY-1-K9](-)">
      <seq>catgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcaccagcaatttccaacgaggagacatacccaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtggatccatccatctttaattaaaggttcctggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="65946" stop="67122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66246" g_stop="66370" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66449" g_stop="66813" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="491" r_length="366" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="504"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E302765" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66246" e_stop="66370"/>
          <exon e_start="66449" e_stop="66813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAA-TTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTG</genome_strand>
        <mrna_strand>CATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACCAGCAATTTCCAACGAGGAGACATACCCAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGGATCCATCCATCTTTAATTAAAGGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700560" ref_strand="+" ref_description="SGN-E700560 [FA13BH06]">
      <seq>ctcattataatgtttgggcaatcctcctccttttgagctaacttttgggttatggttcacttgattgataaattgaacctgtggcaccggctaccagtgttcttggggctactttatctcgcagcacggcgacatcttcatcagcaatataatttgatcaacgtcgatagaacatttactatcgatgttacatcaaatcgggtcgtcgaaaaatacaacgacccctttaatgaaggatgtggcagtgaattacctttctttggtaggaatatgatgcctgttgttcaacatgaaaagttaaagaatccagatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaattcaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactcaacagattgagctaagggcacctgaagaagttgcaagtgagtgtcctctcaagtccttgaagtttttcaagaccaagcaaacacctacgggtttatgtgatatcaagacgggtcacttgaacatacgtactccacagtgggatggaagtgctatttatgggagcagatctgaagtttcaaagaaagtgaggacatttaaagacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatgcttgcgctggacttgtaactctgcaagcgctctttgtacaagagcataatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="70205" stop="75152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70505" g_stop="70555" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70556" i_stop="71705" i_length="1150">
            <donor d_prob="0.209" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71706" g_stop="71951" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="297" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71952" i_stop="74206" i_length="2255">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74207" g_stop="74356" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="447" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74457" g_stop="74590" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="581" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74656" g_stop="74852" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="778" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E700560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70505" e_stop="70555"/>
          <exon e_start="71706" e_stop="71951"/>
          <exon e_start="74207" e_stop="74356"/>
          <exon e_start="74457" e_stop="74590"/>
          <exon e_start="74656" e_stop="74852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTTGTGAGTTAAGCCTAAGACCTAATTTCACAGAACACTCCTTTTTTTTCGTTTTATCTTTGACTAACTATATTAGAATTGTCAAAGCTATAAAACTTTCTATGATTTTTAAATTTTATAAAACGTGCTAATACATTATTTACGAGTATTATTTTTGTAGGATACTCGTGCCTCTCTACTCCATCTCTATATATAGAAGGATGTGTTCCTCCAAAATCAAGCATTTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATTTGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTG</genome_strand>
        <mrna_strand>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG.................................................................GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGCGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692816" ref_strand="+" ref_description="SGN-E692816 [LH_Ea09L06]">
      <seq>tgaccctttaaaccgtatatatttatagcttgtagaaaattaaaccctttacatgggttttgttaatctttttctatttcctcttcgttgtttcattcacaaagattttcatgatgctgttgacaaaatgagtcttctcaacaaacttttgtttaggatggttcacttgattgataaattgaacctgtggcaccggctaccactgttcttggggctactttatctcacagcgcggagacatcttcatgagcaatataatttgatcaacgtccgtagaatatttactaccgatgttacatcaaatcgggacgatgaaaaatacaacaacgatccctttaatgaaggaggtggcagtgaattacctttgtttgggaggaatatgatgcctgttgatcaacatgaaaagttaaagaatccacatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaatttaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactctacagattgagctaagggcacctgaagaagttgcaagtgagtgtactctcaaggcctttaagtttttcacgaccaagcaaacacctacgggtttatgtgatatcaagactggtcacttgaacatacgtactccacagggggatggaagtgttatttatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="70489" stop="74908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70777" g_stop="70933" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70934" i_stop="71705" i_length="772">
            <donor d_prob="0.951" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71706" g_stop="71951" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="406" r_length="249" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71952" i_stop="74206" i_length="2255">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74207" g_stop="74356" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="556" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74457" g_stop="74590" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="690" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74656" g_stop="74679" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="714" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E692816" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70777" e_stop="70933"/>
          <exon e_start="71706" e_stop="71951"/>
          <exon e_start="74207" e_stop="74356"/>
          <exon e_start="74457" e_stop="74590"/>
          <exon e_start="74656" e_stop="74679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAAT---ACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATTTGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAG</genome_strand>
        <mrna_strand>TGACCCTTTAAACCGTATATATTTATAGCTTGTAGAAAATTAAACCCTTTACATGGGTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGCTGTTGACAAAATGAGTCTTCTCAACAAACTTTTGTTTAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCACTGTTCTTGGGGCTACTTTATCTCACAGCGCGGAGACATCTTCATGAGCAATATAATTTGATCAACGTCCGTAGAATATTTACTACCGATGTTACATCAAATCGGGACGATGAAAAATACAACAACGATCCCTTTAATGAAGGAGGTGGCAGTGAATTACCTTTGTTTGGGAGGAATATGATGCCTGTTGATCAACATGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCACATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTTAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCTACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTACTCTCAAGGCCTTTAAGTTTTTCACGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACTGGTCACTTGAACATACGTACTCCACAGGG.................................................................GGATGGAAGTGTTATTTATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408404" ref_strand="+" ref_description="SGN-E408404 [PPI-11-C1]">
      <seq>cagatcctatggttgttgcaacaaagctgctagcacgcagaaaattcatagacacaggaaaacaatttaacatgatagctgcctcatggatacaatttatgattcatgattggatcgatcatttggaagatactcaacagattgagctaagggcacctgaagaagttgcaagtgagtgtcctctcaagtcctttaagtttttcaagacccagcaaactcctacgggtttatgtgatatcaagactgggcacttgaatatgcgtactccacaatgggatggaagtgctatttatgggagcaacgcagaagtttcgaagaaagtgaggacatttaaatacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatgggaaaatcatctctggtgatgttcgcaatacttgggctggacttttgtcactgcaggcactctttgttcaagagcataatcttgtttgtgacaccttgaagaaagaatatccagaattgaaagatgaggacttgtatcgtcatgcaaaacttgtcacttctgctgtaattgcaaaaattcacaccatagattggacagttgaacttctcaataccgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64313" stop="75369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74217" g_stop="74356" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74457" g_stop="74590" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="274" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.923" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74656" g_stop="74869" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="488" r_length="214" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74950" g_stop="75069" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="608" r_length="120" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E408404" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74217" e_stop="74356"/>
          <exon e_start="74457" e_stop="74590"/>
          <exon e_start="74656" e_stop="74869"/>
          <exon e_start="74950" e_stop="75069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAGGTACTAATCTTAGTGATCTTGGATTATTTTATTTTTTTCGAGTATTTTTACAACCTGAATTGATTTTCAAATTTTTCCAGAAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACC</genome_strand>
        <mrna_strand>CAGATCCTATGGTTGTTGCAACAAAGCTGCTAGCACGCAGAAAATTCATAGACACAGGAAAACAATTTAACATGATAGCTGCCTCATGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTTAAGTTTTTCAAGACCCAGCAAACTCCTACGGGTTTATGTGATATCAAGACTGGGCACTTGAATATGCGTACTCCACAATG.................................................................GGATGGAAGTGCTATTTATGGGAGCAACGCAGAAGTTTCGAAGAAAGTGAGGACATTTAAATACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGGAAAATCATCTCTGGTGATGTTCGCAATACTTGGGCTGGACTTTTGTCACTGCAGGCACTCTTTGTTCAAGAGCATAATCTTGTTTGTGACACCTTGAAG................................................................................AAAGAATATCCAGAATTGAAAGATGAGGACTTGTATCGTCATGCAAAACTTGTCACTTCTGCTGTAATTGCAAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACCGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421723" ref_strand="+" ref_description="SGN-E421723 [STM-33-G22]">
      <seq>cagatcctatggttgttgcaacaaagctgctagcacgcagaaaattcatagacacaggaaaacaatttaacatgatagctgcctcatggatacaatttatgattcatgattggatcgatcatttggaagatactcaacagattgagctaagggcacctgaagaagttgcaagtgagtgtcctctcaagtcctttaagtttttcaagacccagcaaactcctacgggtttatgtgatatcaagactgggcacttgaatatgcgtactccacaatgggatggaagtgctatttatgggagcaacgcagaagtttcgaagaaagtgaggacatttaaatacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatgggaaaatcatctctggtgatgttcgcaatacttgggctggacttttgtcactgcaggcactctttgttcaagagcataatcttgtttgtgacaccttgaagaaagaatatccagaattgaaagatgaggacttgtatcgtcatgcaaaacttgtcacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64313" stop="75309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74217" g_stop="74356" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74457" g_stop="74590" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="274" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.923" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74656" g_stop="74869" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="488" r_length="214" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74950" g_stop="75009" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="548" r_length="60" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E421723" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74217" e_stop="74356"/>
          <exon e_start="74457" e_stop="74590"/>
          <exon e_start="74656" e_stop="74869"/>
          <exon e_start="74950" e_stop="75009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAGGTACTAATCTTAGTGATCTTGGATTATTTTATTTTTTTCGAGTATTTTTACAACCTGAATTGATTTTCAAATTTTTCCAGAAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCT</genome_strand>
        <mrna_strand>CAGATCCTATGGTTGTTGCAACAAAGCTGCTAGCACGCAGAAAATTCATAGACACAGGAAAACAATTTAACATGATAGCTGCCTCATGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTTAAGTTTTTCAAGACCCAGCAAACTCCTACGGGTTTATGTGATATCAAGACTGGGCACTTGAATATGCGTACTCCACAATG.................................................................GGATGGAAGTGCTATTTATGGGAGCAACGCAGAAGTTTCGAAGAAAGTGAGGACATTTAAATACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGGAAAATCATCTCTGGTGATGTTCGCAATACTTGGGCTGGACTTTTGTCACTGCAGGCACTCTTTGTTCAAGAGCATAATCTTGTTTGTGACACCTTGAAG................................................................................AAAGAATATCCAGAATTGAAAGATGAGGACTTGTATCGTCATGCAAAACTTGTCACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414904" ref_strand="+" ref_description="SGN-E414904 [STM-20-I14]">
      <seq>cctcgtgccgcttgaacatgcgtactccacaatgggatggaagtgttatttatgggagcaacgcagaagtttcgaagaaagtgaggacatttaaagacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatgggaaaatcatctctggtgatgttcgcaatacttgggctggacttttgtcactgcaggcactctttgttcaagagcataatcttgtttgtgacaccttgaagaaagaatatccagaattgaaagatgaggagttgtatggtcatgcaaaacttgtcacttctgctgtaattgcaaaaattcacaccatagattggacagttgaacttctcaataccgacacccttttagcaggaatgcgcgccaattggtatggattgctaggaaagaaattcaaggatacatttgggcatgttggaggttccattttaggtggttatgtgggaatgaagaaacctgaggatcatggagtgccttattccttaactgaggaattcacgagtgtctatcgaatgcatcaactcctgcctgatacacttgagctaagaaatatcgatgccacgcctggaataaacaaatctcttcctttgactaatgagatcccgatggaagatttaattggggctaaagggaaggagaatctatcaagaattgggtttactaagcaaatggtttcaatggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="64743" stop="75878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74557" g_stop="74590" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.765"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74656" g_stop="74869" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="248" r_length="214" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74950" g_stop="75095" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="394" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75096" i_stop="75186" i_length="91">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75187" g_stop="75414" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="622" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75415" i_stop="75492" i_length="78">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75493" g_stop="75578" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="708" r_length="86" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E414904" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74557" e_stop="74590"/>
          <exon e_start="74656" e_stop="74869"/>
          <exon e_start="74950" e_stop="75095"/>
          <exon e_start="75187" e_stop="75414"/>
          <exon e_start="75493" e_stop="75578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAGGTACTAATCTTAGTGATCTTGGATTATTTTATTTTTTTCGAGTATTTTTACAACCTGAATTGATTTTCAAATTTTTCCAGAAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTGGTCAATAATCTCAAATTAACACAAGTTATTTTCATTTTGTCAACTACGTAGTACTGAGCATGACTCAAATGAATTAATTTTATGTTCGCAGGTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGAGTAAGGCATCGCCCCTTTCAAATTATTGTAAGTAGCTCATTTATTCCTAATCTATTTAATTGCTTATTGAAACTATAGGATCCTGATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGAC</genome_strand>
        <mrna_strand>CCTCGTGCCGCTTGAACATGCGTACTCCACAATG.................................................................GGATGGAAGTGTTATTTATGGGAGCAACGCAGAAGTTTCGAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGGAAAATCATCTCTGGTGATGTTCGCAATACTTGGGCTGGACTTTTGTCACTGCAGGCACTCTTTGTTCAAGAGCATAATCTTGTTTGTGACACCTTGAAG................................................................................AAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATGGTCATGCAAAACTTGTCACTTCTGCTGTAATTGCAAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACCGACACCCTTTTAGCAGGAATGCGCGCCAATTG...........................................................................................GTATGGATTGCTAGGAAAGAAATTCAAGGATACATTTGGGCATGTTGGAGGTTCCATTTTAGGTGGTTATGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTCACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGAATAAACAAATCTCTTCCTTTGACTAATGA..............................................................................GATCCCGATGGAAGATTTAATTGGGGCTAAAGGGAAGGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474696" ref_strand="+" ref_description="SGN-E474696 [cSTB-37-M14]">
      <seq>cctcttgccgcttgaacatgcgtactccacaatgggatggaagtgttatttatgggagcaacacataagtttcgaagaaagtgaggacatttaaagacggaaaattgaaactatcacaaaatgggctccttgaacaagatgaaaatgggaaaatcatctctggtgatgttcccaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="74353" stop="75097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74557" g_stop="74590" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.735"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74656" g_stop="74798" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="177" r_length="143" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E474696" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74557" e_stop="74590"/>
          <exon e_start="74656" e_stop="74798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATG</genome_strand>
        <mrna_strand>CCTCTTGCCGCTTGAACATGCGTACTCCACAATG.................................................................GGATGGAAGTGTTATTTATGGGAGCAACACATAAGTTTCGAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCACAAAATGGGCTCCTTGAACAAGATGAAAATGGGAAAATCATCTCTGGTGATGTTCCCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250206" ref_strand="+" ref_description="SGN-E250206 [cLEG-11-M15]">
      <seq>aaagaaagtgaggacatttaaagacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatgcttgggctggactcgtaactctgcaagcgctctttgcacaagagcataatcttgtttgtgacaccttgaataaagcatatatcccaaattgctggatgaagaactgtatcagcctgcaaaacgtgtcactgctgctgtaattgctaaaattcacaccatatattggacagttgaacttctcaatacagacacccttctagcaggaatgcgcgccaattggtatggattgttaggaaagaaattcaaggatacattgggtcatgttggaggttccattttaagaggttttgtgggaatgaagaaacccgaggatcatggagtgccttattccttaactgaggaatttacgagtgtctatcgaatgcatcaactcctgcatgatacacttgagctaagaaatatcgatgccacgcctggactaaacaaatctcttcctttgactaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="74395" stop="75714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74695" g_stop="74869" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.69"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74950" g_stop="75095" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="323" r_length="148" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75096" i_stop="75186" i_length="91">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75187" g_stop="75414" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="551" r_length="228" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E250206" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74695" e_stop="74869"/>
          <exon e_start="74950" e_stop="75095"/>
          <exon e_start="75187" e_stop="75414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAGGTACTAATCTTAGTGATCTTGGATTATTTTATTTTTTTCGAGTATTTTTACAACCTGAATTGATTTTCAAATTTTTCCAGAAAG-A-ATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTGGTCAATAATCTCAAATTAACACAAGTTATTTTCATTTTGTCAACTACGTAGTACTGAGCATGACTCAAATGAATTAATTTTATGTTCGCAGGTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</genome_strand>
        <mrna_strand>AAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTCGTAACTCTGCAAGCGCTCTTTGCACAAGAGCATAATCTTGTTTGTGACACCTTGAAT................................................................................AAAGCATATATCCCAAATTGCTGGATGAAGAACTGTATCAGCCTGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATATATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG...........................................................................................GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTGGGTCATGTTGGAGGTTCCATTTTAAGAGGTTTTGTGGGAATGAAGAAACCCGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCATGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696656" ref_strand="+" ref_description="SGN-E696656 [LH_Ea09L06](-)">
      <seq>gatggaagatctaattgggggtaaaggaaatgagaatctatcaagaattgggtttactaagcaaatggtttcaatgggacatcaagctagtggagctcttgaactttggaattatccgatatggatgagggatcttattgcccaagacgtcgatggaacagacaggccagatcatattgaccttgcagctcttgaaatttatagggacagagaaaggagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgagtgatgatatggaagttattaaaacacttaatgaagtatatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaagggatttgctatctctgagactgcctttttcatatttctaatcatggcatcaagaaggttagaggcagataaattcttcacgagctattacaatgaggagacatatacaaaaaaaggacttgaatgggtgaatacaactgaaagcttaaaagatgtactagatcgacattatccagagatgactgagaaatggatgaactccaacagcgccttttctgtttgggactcgtctccagaacctcacaatccaattccagtctactttcgcgttcctcggacataggctcaattatacttcaaatcaaaataaaaagaagtaatacgtgtgttgattagtttttacctgcaaatgtggaataagattccatgtactatcctcactacctgtttcaaggagtaagcagttttatgaaactattcagagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="75199" stop="76791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75499" g_stop="75695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75696" i_stop="75783" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75784" g_stop="76027" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="441" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76028" i_stop="76130" i_length="103">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76131" g_stop="76490" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="810" r_length="369" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="827"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E696656" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75499" e_stop="75695"/>
          <exon e_start="75784" e_stop="76027"/>
          <exon e_start="76131" e_stop="76490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTACAGTTTATTTCTCAGGACTAAAACTACTTCAAAATAAATAAATAAAACAGAGTATATATAATTGATATTGTTGTTTGGATGGCAGTTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAGGTTCGTACTAGAACTGAAAAAAAGAAGCAATTATCATTTATGCATAACAATATTATGCCTTTGTAGATTGACTAATATTGAAAGTTGATTTATAAATTTACAGAAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTC------A----AAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</genome_strand>
        <mrna_strand>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCATATTGACCTTGCAGCTCTTGAAA........................................................................................TTTATAGGGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGATTTGCTATCTCTGAGACTGCCTTTTTCATATTTCTAATCATGGCATCAAG.......................................................................................................AAGGTTAGAGGCAGATAAATTCTTCACGAGCTATTACAATGAGGAGACATATACAAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGGACTCGTCTCCAGAACCTCACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAATTATACTTCAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGGAATAAGATTCCATGTACTATCCTCACTACCTGTTTCAAGGAGTAAGCAGTTTTATGAAACTA-TTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435412" ref_strand="+" ref_description="SGN-E435412 [STM-61-B23]">
      <seq>actcaaagattaagttttgaattgaataaaaatgagtgtttttcttgagtaacatcaatggaattttgggagttttcttctaagaatttcctgtaaaaattcgttccatgtatcaatgggccctggcaagcaccaatgtatacaatcactatagcccttcatccatttattaccccaataggctcctggatgtccatctggtctcattaacatggctcttgtcacgtccacaatttcaaacatgttaccatatttttctccatcttttcttgctctttcaatttcttcgaattgaatgctcctaaattcccaatcttgatcaccaattttaacttcatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="76409" stop="77351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76709" g_stop="77051" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E435412" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76709" e_stop="77051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGA-AGAAAATTTTGAATTGAATAAAATGAGGATGTTATTCTTTCACTAAAATCAATGAAAATTGGGGAATTTTCTTCTAAGAATTTCCTGTAAAAATTCATTCCATGTATCAATCGGCCCTGGCAAACACCAATGTATACAATCACTGTAGCCCTTCATCCATTTATTGCCCCAATAGGCTCCTGGATGTCCATCTGGTCTCATTAACATGGCTCTTGTCACGTCCATAAGTTCAAACATGTTACCAAATTTTTCTCCATCTTTTCTTGCTCTTTCAATTTCTTCTATTTGAATGTTCCGAAATTCCCAATCTTGATCACCAATTTTAACTTCATCTCT</genome_strand>
        <mrna_strand>ACTCAAAGATTAAGTTTTGAATTGAATAAAA-ATGAGTGTTTTTC-TTGAGTAACATCAATGGAATTTTGGGAGTTTTCTTCTAAGAATTTCCTGTAAAAATTCGTTCCATGTATCAATGGGCCCTGGCAAGCACCAATGTATACAATCACTATAGCCCTTCATCCATTTATTACCCCAATAGGCTCCTGGATGTCCATCTGGTCTCATTAACATGGCTCTTGTCACGTCCACAATTTCAAACATGTTACCATATTTTTCTCCATCTTTTCTTGCTCTTTCAATTTCTTCGAATTGAATGCTCCTAAATTCCCAATCTTGATCACCAATTTTAACTTCATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435411" ref_strand="+" ref_description="SGN-E435411 [STM-61-B23]">
      <seq>agaggattctccgctggtcaattcgagcaaggagcatggaatgagggatgattttgcaacagaacaagaccgtttactagagatgaagttaaaattggtgatcaagattgggaatttaggagcattcaaatcgaagaaattgaaagagcaagaaaagatggagaaaaatatggtaacatgtttgaaattgtggacgtgacaagagccatgttaatgagaccagatggacatccaggagcctattggggtaataaatggatgaagggctatagtgattgtatacattggtgcttgccagggcccattgatacatggaacgaatttttacaggaaattcttagaagaaaactcccaattttccattgatgttactcaagaaaaacactcatttttattcaattcaaaactttgttctttgagttgaggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="77424" stop="76413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77129" g_stop="76713" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="441"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E435411" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77129" e_stop="76713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACATTCTCCGCCGGTCAATTCGAGCAAGGAGCATGGAATGAAGGAGGATTTTGCAACAGAACAAGACCGTTTACTAGAGATGAAGTTAAAATTGGTGATCAAGATTGGGAATTTCGGAACATTCAAATAGAAGAAATTGAAAGAGCAAGAAAAGATGGAGAAAAATTTGGTAACATGTTTGAACTTATGGACGTGACAAGAGCCATGTTAATGAGACCAGATGGACATCCAGGAGCCTATTGGGGCAATAAATGGATGAAGGGCTACAGTGATTGTATACATTGGTGTTTGCCAGGGCCGATTGATACATGGAATGAATTTTTACAGGAAATTCTTAGAAGAAAATTCCCCAATTTTCATTGATTTTAGTGAAAGAATAACATCCTCATTTTATTCAATTCAAAATTTTCTTCT</genome_strand>
        <mrna_strand>AGAGGATTCTCCGCTGGTCAATTCGAGCAAGGAGCATGGAATGAGGGATGATTTTGCAACAGAACAAGACCGTTTACTAGAGATGAAGTTAAAATTGGTGATCAAGATTGGGAATTTAGGAGCATTCAAATCGAAGAAATTGAAAGAGCAAGAAAAGATGGAGAAAAATATGGTAACATGTTTGAAATTGTGGACGTGACAAGAGCCATGTTAATGAGACCAGATGGACATCCAGGAGCCTATTGGGGTAATAAATGGATGAAGGGCTATAGTGATTGTATACATTGGTGCTTGCCAGGGCCCATTGATACATGGAACGAATTTTTACAGGAAATTCTTAGAAGAAAACTCCCAATTTTCCATTGATGTTACT-CAAGAAAAACA-CTCATTTTTATTCAATTCAAAACTTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466051" ref_strand="+" ref_description="SGN-E466051 [cPRO-23-E13]">
      <seq>attctccgctggtcaattcgagcaaggagcatggaatgagggaggattttgcaacagaacaagaccgtttactagagatgaagttaaaattggtgatcaagattgggaatttaggagcattcaaatcgaagaaattgaaagagcaagaaaagatggagaaaaatatggtaacatgtttgaaattgtggacgtgacaagagccatgttaatgagaccagatggacatccaggagcctattggggtaataaatggatgaagggctatagtgattgtatacattggtgcttgccagggcccattgatacatggaacgaatttttacaggaaattcttagaagaaaactcccaattttccattgatgttactcaagaaaaacactcatttttattcaattcaaaactttgttctttgagttgaggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="77424" stop="76413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77124" g_stop="76713" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="436"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E466051" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77124" e_stop="76713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCGCCGGTCAATTCGAGCAAGGAGCATGGAATGAAGGAGGATTTTGCAACAGAACAAGACCGTTTACTAGAGATGAAGTTAAAATTGGTGATCAAGATTGGGAATTTCGGAACATTCAAATAGAAGAAATTGAAAGAGCAAGAAAAGATGGAGAAAAATTTGGTAACATGTTTGAACTTATGGACGTGACAAGAGCCATGTTAATGAGACCAGATGGACATCCAGGAGCCTATTGGGGCAATAAATGGATGAAGGGCTACAGTGATTGTATACATTGGTGTTTGCCAGGGCCGATTGATACATGGAATGAATTTTTACAGGAAATTCTTAGAAGAAAATTCCCCAATTTTCATTGATTTTAGTGAAAGAATAACATCCTCATTTTATTCAATTCAAAATTTTCTTCT</genome_strand>
        <mrna_strand>ATTCTCCGCTGGTCAATTCGAGCAAGGAGCATGGAATGAGGGAGGATTTTGCAACAGAACAAGACCGTTTACTAGAGATGAAGTTAAAATTGGTGATCAAGATTGGGAATTTAGGAGCATTCAAATCGAAGAAATTGAAAGAGCAAGAAAAGATGGAGAAAAATATGGTAACATGTTTGAAATTGTGGACGTGACAAGAGCCATGTTAATGAGACCAGATGGACATCCAGGAGCCTATTGGGGTAATAAATGGATGAAGGGCTATAGTGATTGTATACATTGGTGCTTGCCAGGGCCCATTGATACATGGAACGAATTTTTACAGGAAATTCTTAGAAGAAAACTCCCAATTTTCCATTGATGTTACT-CAAGAAAAACA-CTCATTTTTATTCAATTCAAAACTTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341330" ref_strand="+" ref_description="SGN-E341330 [cTOE-22-H10]">
      <seq>taaccatcacctactctagaaaaattaacccattcttcacttaaagtagaacaagcaccacatttctctctgtttctctcttctccttgttgttaatgtatatcaaatgaagatgaattttcacaattataatctatttaaagaggataagtttcgtagcccaggtttcttattgatctattcactctttctaaccgtgattttcagctgctacatgcttcatttttccttcagcccaaacgttaacttcataaccaaacaagattcagctcctcctactaaatcctcacacgttacaaatcactctcaacctgcagttcacaacaacattacatccgattgtgacttgttgaatggtaattgggttttagaggagaagggtaattattctctgtattatacaaactttagctgtccaacaattccgcattcaaaaaactgtttgttgaacggaagggcagatgaaggatttatgcagtggagatggaaaccagaagaatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="79501" stop="78309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79201" g_stop="78885" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78884" i_stop="78796" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.693" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78795" g_stop="78609" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="504" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="SGN-E341330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79201" e_stop="78885"/>
          <exon e_start="78795" e_stop="78609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAGGTAAGTAAGTTTTTTAATCACTTATTGTACGTATTTCTCACTAGTTTTACATTGGATGTCAACCTCGTCTTTGCTCATATTTTTGGCAGTTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</genome_strand>
        <mrna_strand>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG.........................................................................................TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317514" ref_strand="+" ref_description="SGN-E317514 [cTOB-17-M13]">
      <seq>agagatcagctactgacaaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80749" stop="93217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81049" g_stop="81140" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="243" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="402" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="561" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85123" g_stop="85154" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="593" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E317514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81049" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85123" e_stop="85154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTC</genome_strand>
        <mrna_strand>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703674" ref_strand="+" ref_description="SGN-E703674 [FA22AF04]">
      <seq>caaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattanagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagatttgttaagagcttaaagatcagtttatgtctttccagatcaaccacatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80765" stop="87223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81065" g_stop="81140" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="227" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="386" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="446" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="545" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85215" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="653" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85296" g_stop="85439" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="797" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86819" g_stop="86923" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="902" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E703674" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81065" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85215"/>
          <exon e_start="85296" e_stop="85439"/>
          <exon e_start="86819" e_stop="86923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCACCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGAC</genome_strand>
        <mrna_strand>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTANAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTTGTTAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571386" ref_strand="+" ref_description="SGN-E571386 [13090]">
      <seq>caaagacaaaactccattaaaactccctttcttcaccttccaaccaactactcccttcactctcctcttccgctcgtgctggagttacttgcaaactcaagtcgaaacgttggagttggaaacttaaaatgggggacgagaaggatgcgttttatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggcgaaccagccataagtgtttttaaagggtatcgcctgagtaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccattgcggcaacccggctcttcaaaagataaaattgtcgggaagaatgttcaggaaaagaggatgcagatggcagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaaatttcgtcatatccttctccctacatgcagtgttcatgcattctgagttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80765" stop="93212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81065" g_stop="81140" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="227" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="386" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="446" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="547" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85149" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="587" r_length="40" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E571386" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81065" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGG-AGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCC-AATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGG</genome_strand>
        <mrna_strand>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACTCCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAACTCAAGTCGAAACGTTGGAGTTGGAAACTTAAAATGGGGGACGAGAAGGATGCGTTTTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGCGAACCAGCCATAAGTGTTTTTAAAGGGTATCGCCTGAGTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTCGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGCAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATTC-TGAG-TTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342682" ref_strand="+" ref_description="SGN-E342682 [cTOF-7-F10]">
      <seq>aaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80766" stop="84574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81066" g_stop="81140" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="226" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="385" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="445" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="544" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E342682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81066" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT</genome_strand>
        <mrna_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344899" ref_strand="+" ref_description="SGN-E344899 [cTOF-21-P1]">
      <seq>caaaactccattaaaactccctattcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacaagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatgtgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttccagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcacgaaaagaggatgcagatggagttggtggcatctgcttcattcgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcaacatatccttctccctacatgcagagatcatgcatccttgagttggatggggcttcaaggggaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80771" stop="85468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81071" g_stop="81140" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="222" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="381" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="441" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85168" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="600" r_length="60" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E344899" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81071" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTCCATTAAAACTCCCT-TTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTG</genome_strand>
        <mrna_strand>CAAAACTCCATTAAAACTCCCTATTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACAAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATGTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCCAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCACGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTGCTTCATTCGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCAACATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGAGATCATGCATCCTTGAGTTGGATGGGGCTTC-AAGGGGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710848" ref_strand="+" ref_description="SGN-E710848 [FA57AA06]">
      <seq>cgcacttattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80780" stop="85647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81072" g_stop="81140" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="219" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="378" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="438" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="537" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85215" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="645" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85296" g_stop="85347" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="697" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E710848" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81072" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85215"/>
          <exon e_start="85296" e_stop="85347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAAT</genome_strand>
        <mrna_strand>CGCACT-TATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318015" ref_strand="+" ref_description="SGN-E318015 [cTOA-30-D24]">
      <seq>aaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcangaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctanctggtgctggggctgtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80772" stop="93257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81072" g_stop="81140" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="220" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="439" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="538" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85123" g_stop="85194" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="610" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E318015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81072" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85123" e_stop="85194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTG</genome_strand>
        <mrna_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCANGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTANCTGGTGCTGGGGCTGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338844" ref_strand="+" ref_description="SGN-E338844 [cTOE-21-G21]">
      <seq>aactccattaaaactctttttcttcaccttccaaccaactacttccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80774" stop="82224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81074" g_stop="81140" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="218" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81924" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="322" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E338844" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81074" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGA</genome_strand>
        <mrna_strand>AACTCCATTAAAACTCTTTTTCTTCACCTTCCAACCAACTACTTCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455871" ref_strand="+" ref_description="SGN-E455871 [cSTS-27-H18]">
      <seq>ctccctttcttcaccttccaaccaactactcccttcactctcctcttccgctcgtgctggagttacttgcaaactcaagtcgaaacgttggagttggaaacttaaaatgggggacgagaaggatgcgttttatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggcgaaccagccataagtgtttttaaagggtatcgcctgagtaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtcgggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtangtgtggcaactaacaacgttgctgaatacagagggcgtatcttanggctaagatatgctcttgagaaaagtttcaaacacattaaagtcaagggcgattcgaaacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80787" stop="85730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81087" g_stop="81140" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="205" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="364" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="424" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="523" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85123" g_stop="85215" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="616" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85296" g_stop="85430" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="751" r_length="135" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E455871" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81087" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85123" e_stop="85215"/>
          <exon e_start="85296" e_stop="85430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTC</genome_strand>
        <mrna_strand>CTCCCTTTCTTCACCTTCCAACCAACTACTCCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAACTCAAGTCGAAACGTTGGAGTTGGAAACTTAAAATGGGGGACGAGAAGGATGCGTTTTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGCGAACCAGCCATAAGTGTTTTTAAAGGGTATCGCCTGAGTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTCGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTANGTGTGGCAACTAACAACGTTGCTGAATACAGAGGGCGTATCTTANGGCTAAGATATGCTCTTGAGAAAAGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426022" ref_strand="+" ref_description="SGN-E426022 [STM-45-N12]">
      <seq>ctccctttcttcaccttccaaccaactactcccttcactctcctcttccgctcgtgctggagttacttgcaaactcaagtcgaaacgttggagttggaaacttaaaatgggggacgagaaggatgcgttttatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggcgaaccagccataagtgtttttaaagggtatcgcctgagtaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtcgggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcaacaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcaaatggaagtatggttttccggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80787" stop="93284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81087" g_stop="81140" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="205" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="364" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="424" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="523" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85123" g_stop="85215" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="616" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85296" g_stop="85307" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="628" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E426022" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81087" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85123" e_stop="85215"/>
          <exon e_start="85296" e_stop="85307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTG</genome_strand>
        <mrna_strand>CTCCCTTTCTTCACCTTCCAACCAACTACTCCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAACTCAAGTCGAAACGTTGGAGTTGGAAACTTAAAATGGGGGACGAGAAGGATGCGTTTTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGCGAACCAGCCATAAGTGTTTTTAAAGGGTATCGCCTGAGTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTCGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAACAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAAATGGAAGTATG................................................................................GTTTTCCGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338334" ref_strand="+" ref_description="SGN-E338334 [cTOE-13-P23]">
      <seq>cctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgccatgtattctatggatttcagtgatgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="81070" stop="82239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81128" g_stop="81140" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="164" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81939" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="283" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E338334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81128" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCG</genome_strand>
        <mrna_strand>CCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCCATGTATTCTATGGATTTCAGTGATGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376663" ref_strand="+" ref_description="SGN-E376663 [TUS-18-M2]">
      <seq>tcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="81070" stop="85659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81130" g_stop="81140" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="162" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="381" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="480" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85215" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="588" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85296" g_stop="85359" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="652" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E376663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81130" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85215"/>
          <exon e_start="85296" e_stop="85359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAA</genome_strand>
        <mrna_strand>TCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231746" ref_strand="+" ref_description="SGN-E231746 [cLED-4-F8]">
      <seq>tcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="81070" stop="85514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81130" g_stop="81140" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81377" g_stop="81527" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="162" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="381" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="480" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85108" g_stop="85210" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="583" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E231746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81130" e_stop="81140"/>
          <exon e_start="81377" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAA</genome_strand>
        <mrna_strand>TCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745499" ref_strand="+" ref_description="SGN-E745499 [GI|47105289]">
      <seq>ggtgaagaaaatgccctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgtaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatgggctcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattaaagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagattgttaaagagcttaaagatcagtttatgtctttccagatcaaccacatggacagagaatccaacactgaagccgatgcccaggcaaatttagccgtgtatctcaagaatggcgaaattcaagtggaatgtgacatgataacttaattaagtcaccaactactacctcaacttgttgggatttaggaaatgatgaatgaccgccaagacagaccaatttggatattcagttgtctgaaactacacttgtaacatgtagatatatgatctgaattatgtgcatgtaacctaattatgtatctggattgaaagtagcttctgctgtaacctaatttgcaatgaaaattggttgggacaagcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80933" stop="88018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81232" g_stop="81527" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="455" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="515" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="614" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85108" g_stop="85215" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="722" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85296" g_stop="85439" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="866" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86819" g_stop="86926" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="974" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86927" i_stop="87343" i_length="417">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87344" g_stop="87395" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1026" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="87396" i_stop="87464" i_length="69">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="87465" g_stop="87713" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1027" r_stop="1275" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1278" polyA_stop="1297"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E745499" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1275</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81232" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85215"/>
          <exon e_start="85296" e_stop="85439"/>
          <exon e_start="86819" e_stop="86926"/>
          <exon e_start="87344" e_stop="87395"/>
          <exon e_start="87465" e_stop="87713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCACCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGAGTATGGCCAATTTTTCCTCTTTTGCTAATTTGAAGCTCACTGAGCTGGTCTATCAGAATTTTGATTTTCGAAGTCCTTATTATATCTTGCAACTGCATGTTGTTTTTGTGATAAATATGGAGTAGTGTGGTCTCCTGTGACCAAAAGAGGTGCAAGCGGTGGTACCTGGACGTCATGTTTAATTTATGCAATATATATAGTTTCTCTTTTCTTGCTAAGCTGTTCTTCGAAATTGATTTTATCACCTTGTTGCTAGAAGTGAATAATCATGCTTCCCTAGTCAATCAATTCACTCTGTTCTGGTTGCTCTGCATGAACAGTTCAGAATTTTTCTGCACATAATTGTTCCGTTCTTTTTAATCATTTAAAGCCTTTTTTCATCCAATTCCAAGGGTTTTTACTTGTTTAACATATCAGGAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGAGTAAGGGTCTTTTGTCTTGTGAGTTTCTCTTTTTCCGTGAGAAATCTAATAAGAAATATTTTGTTGCAGATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAA</genome_strand>
        <mrna_strand>GGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGTAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGGCTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA.....................................................................ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346458" ref_strand="+" ref_description="SGN-E346458 [cTOF-23-L1]">
      <seq>gaaaatgccctaaatatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctgggtgctgggctgtgctgcgtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80938" stop="93265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81238" g_stop="81527" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="448" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="508" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="607" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85123" g_stop="85202" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="687" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E346458" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81238" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85123" e_stop="85202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCT-GGTGCTGGGGCTGTGCTGCGTGCTGC</genome_strand>
        <mrna_strand>GAAAATGCCCTAAAT-ATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGGTGCT-GGGCTGTGCTGCGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347187" ref_strand="+" ref_description="SGN-E347187 [cTOF-25-K2]">
      <seq>gaaaatgccctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcanatggagttggtggcatctccttcatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80938" stop="84503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81238" g_stop="81527" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="449" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="509" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84174" g_stop="84203" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="539" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E347187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81238" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCA</genome_strand>
        <mrna_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAN.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341598" ref_strand="+" ref_description="SGN-E341598 [cTOE-23-E21]">
      <seq>ctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="80947" stop="85449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81247" g_stop="81527" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="440" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="599" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85108" g_stop="85149" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="641" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E341598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81247" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGG</genome_strand>
        <mrna_strand>CTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338561" ref_strand="+" ref_description="SGN-E338561 [cTOE-15-K19]">
      <seq>gaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="81119" stop="85611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81419" g_stop="81527" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81821" g_stop="81979" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="268" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83765" g_stop="83824" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="328" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84174" g_stop="84272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="427" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85108" g_stop="85215" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="535" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85296" g_stop="85311" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="551" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E338561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81419" e_stop="81527"/>
          <exon e_start="81821" e_stop="81979"/>
          <exon e_start="83765" e_stop="83824"/>
          <exon e_start="84174" e_stop="84272"/>
          <exon e_start="85108" e_stop="85215"/>
          <exon e_start="85296" e_stop="85311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTG</genome_strand>
        <mrna_strand>GAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295169" ref_strand="+" ref_description="SGN-E295169 [cLET-20-H23]">
      <seq>ttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattaaagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagattgttaaagagcttaaagatcagtttatgtctttccagatcaaccacatggacagagaatccaacactgaagccgatgcccaggcaaatttagccgtgtatctcaagaatggcgaaattcaagtggaatgtgacatgataacttaattaagtcaccaactactacctcaacttgttgggatttaggaaatgatgaatgaccgccaagacagaccaatttggatattcagttgtctgaaactacacttgtaacatgtagatatatgatctgaattatgtgcatgtaacctaattatgtatctggattgaaagtagcttctgctgtaacctaatttgcaatgaaaattggttgggacaagtacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="84997" stop="88020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85297" g_stop="85439" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86819" g_stop="86926" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="251" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86927" i_stop="87343" i_length="417">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87344" g_stop="87395" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="303" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87396" i_stop="87464" i_length="69">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87465" g_stop="87720" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="559" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E295169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85297" e_stop="85439"/>
          <exon e_start="86819" e_stop="86926"/>
          <exon e_start="87344" e_stop="87395"/>
          <exon e_start="87465" e_stop="87720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCACCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGAGTATGGCCAATTTTTCCTCTTTTGCTAATTTGAAGCTCACTGAGCTGGTCTATCAGAATTTTGATTTTCGAAGTCCTTATTATATCTTGCAACTGCATGTTGTTTTTGTGATAAATATGGAGTAGTGTGGTCTCCTGTGACCAAAAGAGGTGCAAGCGGTGGTACCTGGACGTCATGTTTAATTTATGCAATATATATAGTTTCTCTTTTCTTGCTAAGCTGTTCTTCGAAATTGATTTTATCACCTTGTTGCTAGAAGTGAATAATCATGCTTCCCTAGTCAATCAATTCACTCTGTTCTGGTTGCTCTGCATGAACAGTTCAGAATTTTTCTGCACATAATTGTTCCGTTCTTTTTAATCATTTAAAGCCTTTTTTCATCCAATTCCAAGGGTTTTTACTTGTTTAACATATCAGGAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGAGTAAGGGTCTTTTGTCTTGTGAGTTTCTCTTTTTCCGTGAGAAATCTAATAAGAAATATTTTGTTGCAGATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</genome_strand>
        <mrna_strand>TTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA.....................................................................ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701012" ref_strand="+" ref_description="SGN-E701012 [FA14DB07]">
      <seq>ctcttcccaagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagaatcaccatatttacagagaattcaacactgaagctgatgcccaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="87833" stop="95246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88133" g_stop="88178" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="196" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="355" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="415" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="514" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="92885" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92886" g_stop="92978" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="607" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93058" g_stop="93201" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="751" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94380" g_stop="94487" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="859" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429">
            <donor d_prob="0.740" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94917" g_stop="94946" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="889" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E701012" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88133" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92886" e_stop="92978"/>
          <exon e_start="93058" e_stop="93201"/>
          <exon e_start="94380" e_stop="94487"/>
          <exon e_start="94917" e_stop="94946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCA</genome_strand>
        <mrna_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGAATCACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731784" ref_strand="+" ref_description="SGN-E731784 [LA28AG03]">
      <seq>caagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttncaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatctttccaaatcacccatatttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="87840" stop="94786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88140" g_stop="88178" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="189" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="348" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="408" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="507" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92871" g_stop="92978" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="615" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93058" g_stop="93201" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="759" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94380" g_stop="94486" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="866" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E731784" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88140" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92871" e_stop="92978"/>
          <exon e_start="93058" e_stop="93201"/>
          <exon e_start="94380" e_stop="94486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAG</genome_strand>
        <mrna_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTNCAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCTTTCCAAATCACCCATATTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391743" ref_strand="+" ref_description="SGN-E391743 [TUS-24-E14]">
      <seq>cccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcaaatggaaatatggttttccggttgcgtgaaggtggtgggtgtggcaactaacaacgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="87845" stop="93404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88145" g_stop="88178" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="343" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="502" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92871" g_stop="92978" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="610" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93058" g_stop="93104" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="658" r_length="48" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E391743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88145" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92871" e_stop="92978"/>
          <exon e_start="93058" e_stop="93104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGT-GTGGGTGTGGCAACTAACAACGTTGC</genome_strand>
        <mrna_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAAATGGAAATATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGGTGGGTGTGGCAACTAACAACGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247663" ref_strand="+" ref_description="SGN-E247663 [cLEF-42-E7]">
      <seq>ccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="87846" stop="93263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88146" g_stop="88178" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="183" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="342" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="501" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92871" g_stop="92963" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="594" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E247663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88146" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92871" e_stop="92963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418408" ref_strand="+" ref_description="SGN-E418408 [STM-27-M20]">
      <seq>ttcactctcttcctctgctcgtggtggagtaacttgcaaagccaaataaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctgagtgatttacaagctctgctacgatcttctgttggtgaaccagccataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatcgggaagaatcttcaggaaaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaaaatgccaaattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacgtgcagtgttcatgcattattgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgctgtgctgcgtgctgcagatggaagtatggtatgctccctttccatttagaagatgtggtttgtcgccacaaatttacaggttttcgacttgtagttcttttctgtaggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatacagagtgtaatcttagggctaaaatatgctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="87858" stop="93446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88158" g_stop="88178" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="171" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="330" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="390" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="489" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92871" g_stop="93146" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="764" r_length="275" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E418408" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88158" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92871" e_stop="93146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGA</genome_strand>
        <mrna_strand>TTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAATAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTGAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCCATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATCGGGAAGAATCTTCAGGAAAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAAAATGCCAAATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACGTGCAGTGTTCATGCATTATTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGAAGATGTGGTTTGTCGCCACAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATACAGA-GTGTAATCTTAGGGCTAAAATATGCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441507" ref_strand="+" ref_description="SGN-E441507 [cSTA-30-N15]">
      <seq>ttcactctcttcctctgctcgtggtggagtaacttgcaaagccaaataaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctgagtgatttacaagctctgctacgatcttctgttggtgaaccagccataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatcgggaagaatcttcaggaaaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaaaatgccaaattagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="87858" stop="91833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88158" g_stop="88178" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="171" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="330" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="390" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91533" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="455" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E441507" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88158" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAA</genome_strand>
        <mrna_strand>TTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAATAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTGAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCCATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATCGGGAAGAATCTTCAGGAAAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAAAATGCCAAATTAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322581" ref_strand="+" ref_description="SGN-E322581 [cTOB-26-N14]">
      <seq>tctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggnacacctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="88161" stop="93263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88163" g_stop="88178" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88469" g_stop="88618" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="166" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="325" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="385" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="484" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="92885" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92886" g_stop="92963" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="562" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E322581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88163" e_stop="88178"/>
          <exon e_start="88469" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92886" e_stop="92963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>TCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGNACACCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262841" ref_strand="+" ref_description="SGN-E262841 [cLEG-59-K21]">
      <seq>caaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="88184" stop="94724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88484" g_stop="88618" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88840" g_stop="88998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="294" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90813" g_stop="90872" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91469" g_stop="91567" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="453" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91568" i_stop="92885" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92886" g_stop="92978" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="546" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93058" g_stop="93201" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="690" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94380" g_stop="94424" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="735" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E262841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88484" e_stop="88618"/>
          <exon e_start="88840" e_stop="88998"/>
          <exon e_start="90813" e_stop="90872"/>
          <exon e_start="91469" e_stop="91567"/>
          <exon e_start="92886" e_stop="92978"/>
          <exon e_start="93058" e_stop="93201"/>
          <exon e_start="94380" e_stop="94424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</genome_strand>
        <mrna_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456375" ref_strand="+" ref_description="SGN-E456375 [cSTS-29-I2]">
      <seq>caaataaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctgagtgatttacaagctctgctacgatcttctgttggtgaaccagccataagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="88190" stop="88924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88490" g_stop="88618" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88840" g_stop="88863" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="153" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E456375" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88490" e_stop="88618"/>
          <exon e_start="88840" e_stop="88863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTT</genome_strand>
        <mrna_strand>CAAATAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTGAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCCATAAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315770" ref_strand="+" ref_description="SGN-E315770 [cTOA-26-F13]">
      <seq>ttttacctaacaattctttgtatcaatacgtttaaattcttgtcattgtctgctttatctggatgttgacattcttggggtggggtgagggtggtgatttggtgggtggttagccttggaaagggcttgctcctatgttttgactttattctgctgctggccgaaactagtgaggatagtgatgcgtattggagctgatttggaaaataaaaggttgagaagtcctgattcggcaaccactgatccaagggggaccaagtgattcttaaatcaaactgtaagggcaaagtggaacattgttggttaacgttgcgcaaaagtccaaagttggaagatggtgacaaaatttatatgtaatctatgttgctgggattctccaagaaatagtgctgcacccatgctagatcctccaaaatgcactacttttgaaggattcgacatgctctcatcaacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="91280" stop="92337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91580" g_stop="92037" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E315770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91580" e_stop="92037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</genome_strand>
        <mrna_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391914" ref_strand="+" ref_description="SGN-E391914 [TUS-24-E14](-)">
      <seq>gcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="92657" stop="95598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92957" g_stop="92978" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93058" g_stop="93201" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="166" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94380" g_stop="94487" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="274" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94917" g_stop="94968" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="326" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95036" g_stop="95309" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="600" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E391914" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92957" e_stop="92978"/>
          <exon e_start="93058" e_stop="93201"/>
          <exon e_start="94380" e_stop="94487"/>
          <exon e_start="94917" e_stop="94968"/>
          <exon e_start="95036" e_stop="95309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</genome_strand>
        <mrna_strand>GCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578376" ref_strand="-" ref_description="SGN-E578376 [LE12DB02]">
      <seq>gcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcacccatatttacagagaattcaaccctgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggaccttctctggtattagtttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaactattctagccccctgaaaaaaaaaaaaaaaaaaaaacctgcagcccgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="94077" stop="95617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94376" g_stop="94487" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94917" g_stop="94968" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="164" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67">
            <donor d_prob="0.616" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95036" g_stop="95316" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="445" r_length="281" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="465"/>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E578376" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94376" e_stop="94487"/>
          <exon e_start="94917" e_stop="94968"/>
          <exon e_start="95036" e_stop="95316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTGAA</genome_strand>
        <mrna_strand>GCAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCACCCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACCCTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGACCTTCTCTGGTATTAGTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCCCCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269900" ref_strand="-" ref_description="SGN-E269900 [cLEM-17-L16]">
      <seq>caagaaccagaacatggttgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="94100" stop="95587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94400" g_stop="94487" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94917" g_stop="94968" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="140" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95036" g_stop="95287" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="392" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E269900" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269900" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94400" e_stop="94487"/>
          <exon e_start="94917" e_stop="94968"/>
          <exon e_start="95036" e_stop="95287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</genome_strand>
        <mrna_strand>CAAGAACCAGAACATGGTTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283660" ref_strand="+" ref_description="SGN-E283660 [cLES-1-J5]">
      <seq>tccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="95448" stop="97151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95748" g_stop="96143" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96144" i_stop="96841" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96842" g_stop="96886" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="441" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E283660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95748" e_stop="96143"/>
          <exon e_start="96842" e_stop="96886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</genome_strand>
        <mrna_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294558" ref_strand="+" ref_description="SGN-E294558 [cLET-22-M24]">
      <seq>ccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaagtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="95453" stop="97151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95753" g_stop="96143" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96144" i_stop="96841" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96842" g_stop="96891" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="441" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E294558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95753" e_stop="96143"/>
          <exon e_start="96842" e_stop="96891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</genome_strand>
        <mrna_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAAGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294767" ref_strand="+" ref_description="SGN-E294767 [cLET-17-B21]">
      <seq>gttgtaatctgttttctggataagagggaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggcggttattcttgctcttcaacttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgcctaagaagaatctgttgctcccactacatatgatcaaactgtttctgtttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="95457" stop="96408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95756" g_stop="96108" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="SGN-E294767" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95756" e_stop="96108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCG</genome_strand>
        <mrna_strand>GTTGTAATCTGTTTTCTGGATAAGAGGGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGCGGTTATTCTTGCTCTTCAACTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCTAAGAAGAATCTGTTGCTCCCACTACATATGATCAAACTGTTTCTGTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>130</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1756" PGL_stop="962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1756" e_stop="1131"/>
            <exon e_start="1058" e_stop="962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1756" e_stop="1131" e_length="626"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="1130" i_stop="1059" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1058" e_stop="962" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1756" stop="1342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1691" stop="1131"/>
              <exon start="1058" stop="962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1691" stop="1131"/>
              <exon start="1058" stop="966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1678" stop="1131"/>
              <exon start="1058" stop="984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1662" stop="1254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1656" stop="1163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1643" stop="1131"/>
              <exon start="1058" stop="967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA : ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</gDNA_template>
            <first_frame> F  D  E  K  R  S  F  N  G  T  L  L  I  H  S  S  F  F  S  S  A  N  F  H  S  L  F  H  S  *  Y  K  K  I  I  G  I  C  C  V  F  Q  K  R  D  N  L  P  E  S  D  F  D  I  G  L  R  H  G  R  *  L  E  Y  L  Q  S  R  R  L  T  S  V  I  Y  S  N  L  *  R  T  N  H  F  R  T  M  C  H  G  G  A  K  F  S  I  Q  T  A  I  S  S  I  A  G  T  M  S  S  S  L  P  V  S  S  L  F  S  S  I  H  S  T  S  T  Y  L  S  S  A  I  E  L  V  C  P  L  M  T  K  P  P  V  K  L  P  S  I  V  L  S  P  T  S  F  T  S  F  T  L  P  *  S  S  A  Q  L  L  L  L  L  A  L  G  F  S  A  G  V  S  L  L  W  I  P  V  K  L  L  Y  D  I  S  K  L  I  S  S  L  I  L  Q  L  L  F  P  C  L  K :   L  L  F  A  M  *  S  Q  Q  P  K  E  M  V  R  V  I  P  K  V  H  L  H  L  S  F  S  Y  N  M  C  Q </first_frame>
            <second_frame>  L  M  K  K  G  A  S  M  E  H  S  *  F  I  L  P  S  F  L  A  L  I  F  T  H  C  F  I  H  N  T  K  K  L  L  E  S  V  V  F  S  R  R  E  T  I  F  R  N  P  I  L  I  S  D  S  A  M  E  D  D  *  N  I  C  K  A  G  V  S  P  P  S  F  T  A  I  F  E  E  Q  I  I  F  E  R  C  A  M  V  A  P  N  S  R  S  K  Q  R  Y  R  Q  S  L  E  L  C  L  P  P  Y  L  S  H  L  S  F  H  R  S  T  L  L  L  R  T  F  R  Q  R  *  S  L  Y  V  H  *  *  R  S  R  P  *  N  Y  H  L  S  F  S  H  R  H  L  L  L  P  S  H  C  H  E  V  P  H  S  F  C  C  S  *  L  *  G  F  R  P  G  *  A  C  Y  G  S  P  *  N  C  Y  T  I  S  Q  N  *  F  H  R  *  F  Y  S  C  S  S  P  A  S   : N  C  Y  S  L  C  N  P  S  S  Q  K  K  W  F  G  S  F  Q  K  Y  T  C  T  Y  R  S  H  T  I  C  A   </second_frame>
            <third_frame>   *  *  K  K  E  L  Q  W  N  T  L  N  S  F  F  L  L  F  *  R  *  F  S  L  T  V  S  F  I  I  Q  K  N  Y  W  N  L  L  C  F  P  E  E  R  Q  S  S  G  I  R  F  *  Y  R  T  P  P  W  K  M  T  R  I  F  A  K  P  A  S  H  L  R  H  L  Q  Q  S  L  K  N  K  S  F  S  N  D  V  P  W  W  R  Q  I  L  D  P  N  S  D  I  V  N  R  W  N  Y  V  F  L  L  T  C  L  I  S  L  F  I  D  P  L  Y  F  Y  V  P  F  V  S  D  R  A  C  M  S  T  D  D  E  A  A  R  E  I  T  I  Y  R  S  L  T  D  I  F  Y  F  L  H  I  A  M  K  F  R  T  A  F  V  A  P  S  S  R  V  F  G  R  G  E  L  V  M  D  P  R  E  I  A  I  R  Y  L  K  T  D  F  I  V  D  F  T  A  A  L  P  L  P  Q  :  I  V  I  R  Y  V  I  P  A  A  K  R  N  G  S  G  H  S  K  S  T  L  A  L  I  V  L  I  Q  Y  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1598" stop="1131"/>
                    <exon start="1058" stop="963"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTPPWKMTRIFAKPASHLRHLQQSLKNKSFSNDVPWWRQILDPNSDIVNRWNYVFLLTCLISLFIDPLYFYVPFVSDRACMSTDDEAAREITIYRSLTDIFYFLHIAMKFRTAFVAPSSRVFGRGELVMDPREIAIRYLKTDFIVDFTAALPLPQIVIRYVIPAAKRNGSGHSKSTLALIVLIQYVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1342" PGL_stop="1756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1342" e_stop="1756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1342" e_stop="1756" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1342" stop="1756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCAAA</gDNA_template>
            <first_frame> S  S  V  D  I  Q  A  L  S  L  T  K  G  T  *  K  *  S  G  S  M  K  R  E  M  R  Q  V  R  R  K  T  *  F  Q  R  L  T  I  S  L  F  G  S  R  I  W  R  H  H  G  T  S  F  E  N  D  L  F  F  K  D  C  C  K  *  R  R  *  D  A  G  F  A  N  I  L  V  I  F  H  G  G  V  R  Y  Q  N  R  I  P  E  D  C  L  S  S  G  K  H  N  R  F  Q  *  F  F  C  I  M  N  E  T  V  S  E  N  *  R  *  K  R  R  K  N  E  L  R  V  F  H  *  S  S  F  F  H  Q  </first_frame>
            <second_frame>  H  Q  W  T  Y  K  L  Y  R  *  R  K  V  R  R  S  R  V  D  R  *  K  E  R  *  D  R  *  G  G  R  H  S  S  S  D  *  R  Y  R  C  L  D  R  E  F  G  A  T  M  A  H  R  S  K  M  I  C  S  S  K  I  A  V  N  D  G  G  E  T  P  A  L  Q  I  F  *  S  S  S  M  A  E  S  D  I  K  I  G  F  R  K  I  V  S  L  L  E  N  T  T  D  S  N  N  F  F  V  L  *  M  K  Q  *  V  K  I  S  A  R  K  E  G  R  M  N  *  E  C  S  I  E  A  P  F  F  I  K </second_frame>
            <third_frame>   I  S  G  H  T  S  S  I  A  D  E  R  Y  V  E  V  E  W  I  D  E  K  R  D  E  T  G  K  E  E  D  I  V  P  A  I  D  D  I  A  V  W  I  E  N  L  A  P  P  W  H  I  V  R  K  *  F  V  L  Q  R  L  L  *  M  T  E  V  R  R  R  L  C  K  Y  S  S  H  L  P  W  R  S  P  I  S  K  S  D  S  G  R  L  S  L  F  W  K  T  Q  Q  I  P  I  I  F  L  Y  Y  E  *  N  S  E  *  K  L  A  L  E  K  K  E  E  *  I  K  S  V  P  L  K  L  L  F  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0065M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16118" PGL_stop="17805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16118" e_stop="17027"/>
            <exon e_start="17604" e_stop="17630"/>
            <exon e_start="17792" e_stop="17805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.893" e_score="0.957"/>
          <exon-intron don_prob="0.592" acc_prob="0.807" e_score="0.556"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="16118" e_stop="17027" e_length="910"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.893">
            <gDNA_intron_boundary i_start="17028" i_stop="17603" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="0.556">
            <gDNA_exon_boundary e_start="17604" e_stop="17630" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.592" acc_prob="0.807">
            <gDNA_intron_boundary i_start="17631" i_stop="17791" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.643">
            <gDNA_exon_boundary e_start="17792" e_stop="17805" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16118" stop="16846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16118" stop="16625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16435" stop="16980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16435" stop="16980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16436" stop="16980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16510" stop="17027"/>
              <exon start="17604" stop="17630"/>
              <exon start="17792" stop="17805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428921" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAATTCCAGCTATTTTCTCCCATTTCGTCACCAACCTCCCTGCTTTCCACCAGGTTCTTGTATTCCTTTGCATCAAGTCCGTCCCAGTACCTCACGTGAGACCTGAAGAAAGGTTCCTTGTTGGAAGAATTGGACCGAAAGAGTACCGTGTCTACAGATGCATAGCACGATATGGTTATCGAGACATTCACATGGATGACGTAGAGTTTGAAAAGGACTTAGTTTGTAGCATAGCTGAATTCATCCGCTCAGAGGGACGAGGACATAGTTTTGAAGCTGTAGAAGATATAGACGCGAATGAAAGGCTGACTGTTATTGGGACAACTTCAACACACATTGATGGGATAAGAATATGCGAGGACAACGGAGAGTTGACTCATGTAGATACAGAAATGATAGAGATCAGCTCGCCAGAAGTTCCACGAAAAAGAGTAAGATTTCTGGTGCCTGAGAGCCCACAAATGGATGCAAGTGTTCGCGAAGAGTTGCAAGAACTTATGGAAGCTAGGGAAGCAGGGATGGCATTTATACTTGGTCATTGTTATGTTAGAGCTAAAAGGGGTTCAAGTTTGATAAAAAAGCTGGTGATTAACATAGGATATGACTTTTTAAGAAGAAATTGTCGTGGACCAACATATGCATTGAGCTTCCCTCAAGCTTCAACATTGGAGGTTGGAATGATCTACCATGTATAATTTATGCTTTACTTTTTTTCTAATTAAAGGATAGAATTGTAGCATATGTTTTTTGTTTTTTTTTGTATTTCAAATTCGAAAAGCTTTGTAAATGTTGTAATGGTACACGAGTTTTTGCTTTATACAAGGCAATAAATTAAAAGGAAATACTGAACTTTAGAGGCATGTACGTTTGAATAAAGAGATGGAAATATGAGTTTAACAAGTTGTTTA : ATCACGAATTAAATAAAAAGAACTCAG : TAATATGAGAAAAA</gDNA_template>
            <first_frame> R  N  S  S  Y  F  L  P  F  R  H  Q  P  P  C  F  P  P  G  S  C  I  P  L  H  Q  V  R  P  S  T  S  R  E  T  *  R  K  V  P  C  W  K  N  W  T  E  R  V  P  C  L  Q  M  H  S  T  I  W  L  S  R  H  S  H  G  *  R  R  V  *  K  G  L  S  L  *  H  S  *  I  H  P  L  R  G  T  R  T  *  F  *  S  C  R  R  Y  R  R  E  *  K  A  D  C  Y  W  D  N  F  N  T  H  *  W  D  K  N  M  R  G  Q  R  R  V  D  S  C  R  Y  R  N  D  R  D  Q  L  A  R  S  S  T  K  K  S  K  I  S  G  A  *  E  P  T  N  G  C  K  C  S  R  R  V  A  R  T  Y  G  S  *  G  S  R  D  G  I  Y  T  W  S  L  L  C  *  S  *  K  G  F  K  F  D  K  K  A  G  D  *  H  R  I  *  L  F  K  K  K  L  S  W  T  N  I  C  I  E  L  P  S  S  F  N  I  G  G  W  N  D  L  P  C  I  I  Y  A  L  L  F  F  *  L  K  D  R  I  V  A  Y  V  F  C  F  F  L  Y  F  K  F  E  K  L  C  K  C  C  N  G  T  R  V  F  A  L  Y  K  A  I  N  *  K  E  I  L  N  F  R  G  M  Y  V  *  I  K  R  W  K  Y  E  F  N  K  L  F   : N  H  E  L  N  K  K  N  S   : V  I  *  E  K </first_frame>
            <second_frame>  G  I  P  A  I  F  S  H  F  V  T  N  L  P  A  F  H  Q  V  L  V  F  L  C  I  K  S  V  P  V  P  H  V  R  P  E  E  R  F  L  V  G  R  I  G  P  K  E  Y  R  V  Y  R  C  I  A  R  Y  G  Y  R  D  I  H  M  D  D  V  E  F  E  K  D  L  V  C  S  I  A  E  F  I  R  S  E  G  R  G  H  S  F  E  A  V  E  D  I  D  A  N  E  R  L  T  V  I  G  T  T  S  T  H  I  D  G  I  R  I  C  E  D  N  G  E  L  T  H  V  D  T  E  M  I  E  I  S  S  P  E  V  P  R  K  R  V  R  F  L  V  P  E  S  P  Q  M  D  A  S  V  R  E  E  L  Q  E  L  M  E  A  R  E  A  G  M  A  F  I  L  G  H  C  Y  V  R  A  K  R  G  S  S  L  I  K  K  L  V  I  N  I  G  Y  D  F  L  R  R  N  C  R  G  P  T  Y  A  L  S  F  P  Q  A  S  T  L  E  V  G  M  I  Y  H  V  *  F  M  L  Y  F  F  S  N  *  R  I  E  L  *  H  M  F  F  V  F  F  C  I  S  N  S  K  S  F  V  N  V  V  M  V  H  E  F  L  L  Y  T  R  Q  *  I  K  R  K  Y  *  T  L  E  A  C  T  F  E  *  R  D  G  N  M  S  L  T  S  C  L  :  I  T  N  *  I  K  R  T  Q  :  *  Y  E  K   </second_frame>
            <third_frame>   E  F  Q  L  F  S  P  I  S  S  P  T  S  L  L  S  T  R  F  L  Y  S  F  A  S  S  P  S  Q  Y  L  T  *  D  L  K  K  G  S  L  L  E  E  L  D  R  K  S  T  V  S  T  D  A  *  H  D  M  V  I  E  T  F  T  W  M  T  *  S  L  K  R  T  *  F  V  A  *  L  N  S  S  A  Q  R  D  E  D  I  V  L  K  L  *  K  I  *  T  R  M  K  G  *  L  L  L  G  Q  L  Q  H  T  L  M  G  *  E  Y  A  R  T  T  E  S  *  L  M  *  I  Q  K  *  *  R  S  A  R  Q  K  F  H  E  K  E  *  D  F  W  C  L  R  A  H  K  W  M  Q  V  F  A  K  S  C  K  N  L  W  K  L  G  K  Q  G  W  H  L  Y  L  V  I  V  M  L  E  L  K  G  V  Q  V  *  *  K  S  W  *  L  T  *  D  M  T  F  *  E  E  I  V  V  D  Q  H  M  H  *  A  S  L  K  L  Q  H  W  R  L  E  *  S  T  M  Y  N  L  C  F  T  F  F  L  I  K  G  *  N  C  S  I  C  F  L  F  F  F  V  F  Q  I  R  K  A  L  *  M  L  *  W  Y  T  S  F  C  F  I  Q  G  N  K  L  K  G  N  T  E  L  *  R  H  V  R  L  N  K  E  M  E  I  *  V  *  Q  V  V  * :   S  R  I  K  *  K  E  L  S :   N  M  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16119" stop="16814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGRIGPKEYRVYRCIARYGYRDIHMDDVEFEKDLVCSIAEFIRSEGRGHSFEAVEDIDANERLTVIGTTSTHIDGIRICEDNGELTHVDTEMIEISSPEVPRKRVRFLVPESPQMDASVREELQELMEAREAGMAFILGHCYVRAKRGSSLIKKLVINIGYDFLRRNCRGPTYALSFPQASTLEVGMIYHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21264" PGL_stop="22131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21264" e_stop="22131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="21264" e_stop="22131" e_length="868"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21264" stop="21907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21265" stop="21885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21265" stop="21845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21692" stop="22131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGCATGCAACATCCACCATATCAGAGAAATATGAAGTCAGTGAGGCCTCCCATAATTCCGCCAGAAGATGAATACGAGAAACAGGATGAAAACCTGTTTCTATCACTAGGAAGGCTTGTTATGAACACTGGTTCGACTGTGGTTGAAATATTTGGAGGAATGTTCTCAGGTTTCAGAAAGAACAGTTACCCCCATCATGTACAGCAGCACTACCATTACAATCACAAACAATCGAGTACATGGCCAATGCAGGAAAGCTATGTAATTCGAGATGAAGATGAGGCCCCACCCCTTGATACCAGAGACCCTACACCCCGAAAAACCTATCCAATCATGAACAAAGACCCGGAGAAACCACGACATATCAGACAAAGTCAATCACATTATGTAGGATGGAATGGCAATGCACATGGGCATGGCAATTTTCAGCAACAACAACATCAACATCAACAACAGTTTCTTCCACAAGTGTATCAGCATCACGACAAGCACCAGTCATCAAGTCCTCAAACATACTACGAGGAAAGCTGTGAAACGAAAGAGATTGTGTTTGGAGCAGTTCAAGAACAGGATGGACGACATGAAACAATGGTGATAAAAGCAGTTGATTATGGGGATCCTGCTTATAACAATCACAACGTTCGATCCAGGTACAACTACAGCACGCGTTACTCATTCTGATGGTAATAGCTAGACGACCATTGCGAAAAACATCAACTTGTACTCTGTCTGGATTTCACTTGTTGTATCTTTCATAGGGAAATGGATATGATCATAGAAAACAGCACCAACAAAGTATATGAATTCTGAATTTCTTTTGTAATCCATAACTTATAGTGAATCTTTTTGAGAATTAAGTATATTT</gDNA_template>
            <first_frame> R  G  M  Q  H  P  P  Y  Q  R  N  M  K  S  V  R  P  P  I  I  P  P  E  D  E  Y  E  K  Q  D  E  N  L  F  L  S  L  G  R  L  V  M  N  T  G  S  T  V  V  E  I  F  G  G  M  F  S  G  F  R  K  N  S  Y  P  H  H  V  Q  Q  H  Y  H  Y  N  H  K  Q  S  S  T  W  P  M  Q  E  S  Y  V  I  R  D  E  D  E  A  P  P  L  D  T  R  D  P  T  P  R  K  T  Y  P  I  M  N  K  D  P  E  K  P  R  H  I  R  Q  S  Q  S  H  Y  V  G  W  N  G  N  A  H  G  H  G  N  F  Q  Q  Q  Q  H  Q  H  Q  Q  Q  F  L  P  Q  V  Y  Q  H  H  D  K  H  Q  S  S  S  P  Q  T  Y  Y  E  E  S  C  E  T  K  E  I  V  F  G  A  V  Q  E  Q  D  G  R  H  E  T  M  V  I  K  A  V  D  Y  G  D  P  A  Y  N  N  H  N  V  R  S  R  Y  N  Y  S  T  R  Y  S  F  *  W  *  *  L  D  D  H  C  E  K  H  Q  L  V  L  C  L  D  F  T  C  C  I  F  H  R  E  M  D  M  I  I  E  N  S  T  N  K  V  Y  E  F  *  I  S  F  V  I  H  N  L  *  *  I  F  L  R  I  K  Y  I  </first_frame>
            <second_frame>  E  A  C  N  I  H  H  I  R  E  I  *  S  Q  *  G  L  P  *  F  R  Q  K  M  N  T  R  N  R  M  K  T  C  F  Y  H  *  E  G  L  L  *  T  L  V  R  L  W  L  K  Y  L  E  E  C  S  Q  V  S  E  R  T  V  T  P  I  M  Y  S  S  T  T  I  T  I  T  N  N  R  V  H  G  Q  C  R  K  A  M  *  F  E  M  K  M  R  P  H  P  L  I  P  E  T  L  H  P  E  K  P  I  Q  S  *  T  K  T  R  R  N  H  D  I  S  D  K  V  N  H  I  M  *  D  G  M  A  M  H  M  G  M  A  I  F  S  N  N  N  I  N  I  N  N  S  F  F  H  K  C  I  S  I  T  T  S  T  S  H  Q  V  L  K  H  T  T  R  K  A  V  K  R  K  R  L  C  L  E  Q  F  K  N  R  M  D  D  M  K  Q  W  *  *  K  Q  L  I  M  G  I  L  L  I  T  I  T  T  F  D  P  G  T  T  T  A  R  V  T  H  S  D  G  N  S  *  T  T  I  A  K  N  I  N  L  Y  S  V  W  I  S  L  V  V  S  F  I  G  K  W  I  *  S  *  K  T  A  P  T  K  Y  M  N  S  E  F  L  L  *  S  I  T  Y  S  E  S  F  *  E  L  S  I  F </second_frame>
            <third_frame>   R  H  A  T  S  T  I  S  E  K  Y  E  V  S  E  A  S  H  N  S  A  R  R  *  I  R  E  T  G  *  K  P  V  S  I  T  R  K  A  C  Y  E  H  W  F  D  C  G  *  N  I  W  R  N  V  L  R  F  Q  K  E  Q  L  P  P  S  C  T  A  A  L  P  L  Q  S  Q  T  I  E  Y  M  A  N  A  G  K  L  C  N  S  R  *  R  *  G  P  T  P  *  Y  Q  R  P  Y  T  P  K  N  L  S  N  H  E  Q  R  P  G  E  T  T  T  Y  Q  T  K  S  I  T  L  C  R  M  E  W  Q  C  T  W  A  W  Q  F  S  A  T  T  T  S  T  S  T  T  V  S  S  T  S  V  S  A  S  R  Q  A  P  V  I  K  S  S  N  I  L  R  G  K  L  *  N  E  R  D  C  V  W  S  S  S  R  T  G  W  T  T  *  N  N  G  D  K  S  S  *  L  W  G  S  C  L  *  Q  S  Q  R  S  I  Q  V  Q  L  Q  H  A  L  L  I  L  M  V  I  A  R  R  P  L  R  K  T  S  T  C  T  L  S  G  F  H  L  L  Y  L  S  *  G  N  G  Y  D  H  R  K  Q  H  Q  Q  S  I  *  I  L  N  F  F  C  N  P  *  L  I  V  N  L  F  E  N  *  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21264" stop="21947"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGMQHPPYQRNMKSVRPPIIPPEDEYEKQDENLFLSLGRLVMNTGSTVVEIFGGMFSGFRKNSYPHHVQQHYHYNHKQSSTWPMQESYVIRDEDEAPPLDTRDPTPRKTYPIMNKDPEKPRHIRQSQSHYVGWNGNAHGHGNFQQQQHQHQQQFLPQVYQHHDKHQSSSPQTYYEESCETKEIVFGAVQEQDGRHETMVIKAVDYGDPAYNNHNVRSRYNYSTRYSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27879" PGL_stop="28241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27879" e_stop="28241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="27879" e_stop="28241" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27879" stop="28241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTCCATATTTATCTGCAAACAACAAAACCCCTAATTTAAAGGGGTTGCGGATTGTGTGATATTTTCTCCTTTCTTGTTGTTGTCGTCAATTTCTTGAAACATGGCGGGTCAAACAAACACAAAAGACTCGGACGTGAATGAAGAATTGCAGGAGCTCGAATTCACGAAAAGGGGTTGTTGTTTTTGGTTTCCATCTTTCACATGTGGAAGAGGCGTTTGGGAACGAGTCTCTACCAGTGATCAAAAGGAAGAAACGCATTGGTGGGATAAGGGGTTAAACGTTGTTATGAAAGTCAGGGAGTGGTCGGAACTTGTGGCAGGTCCAAAATGGAAGACATTTATTAGACGATTCAATAAAA</gDNA_template>
            <first_frame> K  I  P  Y  L  S  A  N  N  K  T  P  N  L  K  G  L  R  I  V  *  Y  F  L  L  S  C  C  C  R  Q  F  L  E  T  W  R  V  K  Q  T  Q  K  T  R  T  *  M  K  N  C  R  S  S  N  S  R  K  G  V  V  V  F  G  F  H  L  S  H  V  E  E  A  F  G  N  E  S  L  P  V  I  K  R  K  K  R  I  G  G  I  R  G  *  T  L  L  *  K  S  G  S  G  R  N  L  W  Q  V  Q  N  G  R  H  L  L  D  D  S  I  K </first_frame>
            <second_frame>  K  F  H  I  Y  L  Q  T  T  K  P  L  I  *  R  G  C  G  L  C  D  I  F  S  F  L  V  V  V  V  N  F  L  K  H  G  G  S  N  K  H  K  R  L  G  R  E  *  R  I  A  G  A  R  I  H  E  K  G  L  L  F  L  V  S  I  F  H  M  W  K  R  R  L  G  T  S  L  Y  Q  *  S  K  G  R  N  A  L  V  G  *  G  V  K  R  C  Y  E  S  Q  G  V  V  G  T  C  G  R  S  K  M  E  D  I  Y  *  T  I  Q  *   </second_frame>
            <third_frame>   N  S  I  F  I  C  K  Q  Q  N  P  *  F  K  G  V  A  D  C  V  I  F  S  P  F  L  L  L  S  S  I  S  *  N  M  A  G  Q  T  N  T  K  D  S  D  V  N  E  E  L  Q  E  L  E  F  T  K  R  G  C  C  F  W  F  P  S  F  T  C  G  R  G  V  W  E  R  V  S  T  S  D  Q  K  E  E  T  H  W  W  D  K  G  L  N  V  V  M  K  V  R  E  W  S  E  L  V  A  G  P  K  W  K  T  F  I  R  R  F  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27980" stop="28240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMAGQTNTKDSDVNEELQELEFTKRGCCFWFPSFTCGRGVWERVSTSDQKEETHWWDKGLNVVMKVREWSELVAGPKWKTFIRRFNK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32935" PGL_stop="32707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32935" e_stop="32707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="32935" e_stop="32707" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32935" stop="32707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTTGGTCCTAAAGAGCCCTTTGATTGTGCTGTTTGCTTGTGTGAATTCTCTGATAAGGACAAATTGAGATTGCTCCCTACTTGTAGCCATGCTTTCCATATCAACTGCATTGATACTTGGCTCCTCTCTAACTCAACGTGCCCTCTTTGTCGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTACGTTGAACCGAGAGATGATGATG</gDNA_template>
            <first_frame> V  V  G  P  K  E  P  F  D  C  A  V  C  L  C  E  F  S  D  K  D  K  L  R  L  L  P  T  C  S  H  A  F  H  I  N  C  I  D  T  W  L  L  S  N  S  T  C  P  L  C  R  A  T  L  F  N  P  G  F  P  I  E  N  P  I  F  D  Y  V  E  P  R  D  D  D  </first_frame>
            <second_frame>  L  L  V  L  K  S  P  L  I  V  L  F  A  C  V  N  S  L  I  R  T  N  *  D  C  S  L  L  V  A  M  L  S  I  S  T  A  L  I  L  G  S  S  L  T  Q  R  A  L  F  V  E  Q  L  F  S  I  P  G  F  P  L  K  I  Q  F  S  I  T  L  N  R  E  M  M  M </second_frame>
            <third_frame>   C  W  S  *  R  A  L  *  L  C  C  L  L  V  *  I  L  *  *  G  Q  I  E  I  A  P  Y  L  *  P  C  F  P  Y  Q  L  H  *  Y  L  A  P  L  *  L  N  V  P  S  L  S  S  N  S  F  Q  S  R  V  S  H  *  K  S  N  F  R  L  R  *  T  E  R  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32935" stop="32708"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVGPKEPFDCAVCLCEFSDKDKLRLLPTCSHAFHINCIDTWLLSNSTCPLCRATLFNPGFPIENPIFDYVEPRDDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33930" PGL_stop="33111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33930" e_stop="33111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="33930" e_stop="33111" e_length="820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33930" stop="33395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33862" stop="33308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33798" stop="33285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33798" stop="33308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33797" stop="33219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33613" stop="33111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTTGTCAGTTGACAGCTTTTGGTTTCCAAATAAGTCAATGTCCTTTTTCAGTTCAAAATCACCCCTCTAACTTCTCTGTTTTATATTTTACACACTATTTTTTTCTATGTTGCTAAAAACTAGAAATTGTTTAAACATAGAGAGAAAAATAGGCTCAAAAATATTCAAACTTTTTTTTTTCTATTTATGTTGTAAAAGGGATTTCAAGATCCTATAAATGTCTTAGGGTTTTGCTGCAGCCAGAAGTGATTCTTTATATAAAGGGATTGTTATAAGTATTGTTTTTCTGTGTAATGGTGACTAAGTGGGAATCAAGACAGGTAAAGATTCTGTCTTTAGCATTTTCTGTTTGGTTTCATCACTATCTCTTGTTATTTGCTCTGTCACTAAATTGTGTTTTCTTTTGAAAAAAAAACAAAAGACTCCAACTTTTCTTGAATCTGAAGGGACAGTGATTCTGAATGTTTGAGTTTTTCTAAGCTTCTGAGATGGTGAAAGGTAGATAAAAAAAGTTGGTTTTTTTTTAATGAGTTGTTGAGATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTGGGCATACCCATCTGAAAAGTTCTTGGATTCAATATAGAAAAGATGGTGTTTTTACATATCCTCCTCCTCTGTTTCCCCCATCTCCTCCTCCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACCAAACTCATCTTCTTCATCCCCATCTGGAAACAAGATTAGTCCAGCTGTTCTTTTCATTATAGTTATATTAGCTGTCCTGTTTTTCATATCTGGTCTGCTTCATTTGCT</gDNA_template>
            <first_frame> R  L  V  S  *  Q  L  L  V  S  K  *  V  N  V  L  F  Q  F  K  I  T  P  L  T  S  L  F  Y  I  L  H  T  I  F  F  Y  V  A  K  N  *  K  L  F  K  H  R  E  K  N  R  L  K  N  I  Q  T  F  F  F  L  F  M  L  *  K  G  F  Q  D  P  I  N  V  L  G  F  C  C  S  Q  K  *  F  F  I  *  R  D  C  Y  K  Y  C  F  S  V  *  W  *  L  S  G  N  Q  D  R  *  R  F  C  L  *  H  F  L  F  G  F  I  T  I  S  C  Y  L  L  C  H  *  I  V  F  S  F  E  K  K  T  K  D  S  N  F  S  *  I  *  R  D  S  D  S  E  C  L  S  F  S  K  L  L  R  W  *  K  V  D  K  K  S  W  F  F  F  N  E  L  L  R  *  F  V  H  L  V  K  L  S  H  K  D  G  F  L  G  I  P  I  *  K  V  L  G  F  N  I  E  K  M  V  F  L  H  I  L  L  L  C  F  P  H  L  L  L  H  L  V  E  V  L  V  F  I  R  N  Q  T  H  L  L  H  P  H  L  E  T  R  L  V  Q  L  F  F  S  L  *  L  Y  *  L  S  C  F  S  Y  L  V  C  F  I  C  </first_frame>
            <second_frame>  D  L  S  V  D  S  F  W  F  P  N  K  S  M  S  F  F  S  S  K  S  P  L  *  L  L  C  F  I  F  Y  T  L  F  F  S  M  L  L  K  T  R  N  C  L  N  I  E  R  K  I  G  S  K  I  F  K  L  F  F  F  Y  L  C  C  K  R  D  F  K  I  L  *  M  S  *  G  F  A  A  A  R  S  D  S  L  Y  K  G  I  V  I  S  I  V  F  L  C  N  G  D  *  V  G  I  K  T  G  K  D  S  V  F  S  I  F  C  L  V  S  S  L  S  L  V  I  C  S  V  T  K  L  C  F  L  L  K  K  K  Q  K  T  P  T  F  L  E  S  E  G  T  V  I  L  N  V  *  V  F  L  S  F  *  D  G  E  R  *  I  K  K  V  G  F  F  L  M  S  C  *  D  D  L  F  I  W  *  S  *  V  T  K  M  G  F  W  A  Y  P  S  E  K  F  L  D  S  I  *  K  R  W  C  F  Y  I  S  S  S  S  V  S  P  I  S  S  S  I  W  W  K  F  *  F  S  *  G  T  K  L  I  F  F  I  P  I  W  K  Q  D  *  S  S  C  S  F  H  Y  S  Y  I  S  C  P  V  F  H  I  W  S  A  S  F  A </second_frame>
            <third_frame>   T  C  Q  L  T  A  F  G  F  Q  I  S  Q  C  P  F  S  V  Q  N  H  P  S  N  F  S  V  L  Y  F  T  H  Y  F  F  L  C  C  *  K  L  E  I  V  *  T  *  R  E  K  *  A  Q  K  Y  S  N  F  F  F  S  I  Y  V  V  K  G  I  S  R  S  Y  K  C  L  R  V  L  L  Q  P  E  V  I  L  Y  I  K  G  L  L  *  V  L  F  F  C  V  M  V  T  K  W  E  S  R  Q  V  K  I  L  S  L  A  F  S  V  W  F  H  H  Y  L  L  L  F  A  L  S  L  N  C  V  F  F  *  K  K  N  K  R  L  Q  L  F  L  N  L  K  G  Q  *  F  *  M  F  E  F  F  *  A  S  E  M  V  K  G  R  *  K  K  L  V  F  F  *  *  V  V  E  M  I  C  S  F  G  E  V  E  S  Q  R  W  V  S  G  H  T  H  L  K  S  S  W  I  Q  Y  R  K  D  G  V  F  T  Y  P  P  P  L  F  P  P  S  P  P  P  F  G  G  S  S  S  F  H  K  E  P  N  S  S  S  S  S  P  S  G  N  K  I  S  P  A  V  L  F  I  I  V  I  L  A  V  L  F  F  I  S  G  L  L  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33397" stop="33113"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEMICSFGEVESQRWVSGHTHLKSSWIQYRKDGVFTYPPPLFPPSPPPFGGSSSFHKEPNSSSSSPSGNKISPAVLFIIVILAVLFFISGLLHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="36430" PGL_stop="36278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36430" e_stop="36278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="36430" e_stop="36278" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36430" stop="36278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTCTCTCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGTAATTGTATAATTCGCAATT</gDNA_template>
            <first_frame> *  D  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  L  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  V  I  V  *  F  A  I </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  I  L  L  L  Y  K  A  R  E  N  C  I  S  L  *  L  Y  N  S  Q   </second_frame>
            <third_frame>   R  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  S  L  S  L  Y  T  K  T  E  T  Q  Y  I  Y  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0065M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36876" PGL_stop="38577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36876" e_stop="37473"/>
            <exon e_start="37551" e_stop="37613"/>
            <exon e_start="37689" e_stop="37805"/>
            <exon e_start="38397" e_stop="38577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.397" e_score="0.994"/>
          <exon-intron don_prob="0.822" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="36876" e_stop="37473" e_length="598"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.397">
            <gDNA_intron_boundary i_start="37474" i_stop="37550" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37551" e_stop="37613" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.822" acc_prob="0.922">
            <gDNA_intron_boundary i_start="37614" i_stop="37688" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37689" e_stop="37805" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="37806" i_stop="38396" i_length="591"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="38397" e_stop="38577" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36876" stop="37393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37137" stop="37473"/>
              <exon start="37551" stop="37613"/>
              <exon start="37689" stop="37805"/>
              <exon start="38397" stop="38528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37400" stop="37473"/>
              <exon start="37551" stop="37613"/>
              <exon start="37689" stop="37805"/>
              <exon start="38397" stop="38577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATTTTGTGTTTGACATAATCTATTACATACAAAAATTTCTAATTTGATTGACCACAAGTTCTAAGAGTAGATTTTGAAGATTATTTTTTAAATATATGTTTGATATTTTCAAGTTGTCATGAACTAACTCATACTTTCATTAGTACAAATTATTTAAATACGAAAAATATTCAAGTTGACAACTCTACCCTACCCTGCTTTGGCCGCAGTAGTCAAATTTCTCTTTCTTTTAGGTTTAAGCACGATAGGCAAATAAAAAGGGTCCAACTTGATTAATGAAACCAAAAAAAAAAAAAAACATTATCAAATTTTGTACGGCAATGAAAAAGTTGTTGTCTTTCTTCTGAAGAAAAAAAAGGATTCTTGACTAGGTGTGGGACTGGGAGTGTAAAGAAAGAAAAATGGTGATGCAATGTTGGTCAACTGATTTCTTGCCCTTTTTGGCAATGGTGATGGTGGAATGTTGTGAAATGTTGATGATTACACTTGGTAAAGCAGCCATGAATGATGGATTGAACAATCTTGTTTATGTTGTTTACTATAATGCCCTTGGTACCCTTTTTCTTCTTCCTTGCTTAATCTTCCATAGACACAG : AAGCAATATGGTTCCTATTACTTTGCCTATATTGTGGAGATTCTTCCTTCTTGGCCTGTTGGG : AATTTGTTTGGTGCAAGCTGTGGCCTTTACAGGTATTAAGTACAGCACTCCTACACTGGCAGCTGCTTTAGGGAATTTGATGCCAGGTTTTACATTTTTGCTTGCCATCATTTTCAG : GATGGAGAAGTTAGATATAACAAAGGCCAGCAGTCAAGCAAAATCTGTGGGCACCGTAGTGGCAATTATGGGGGCATCCATCATGACATTATACAAAGGACCAAGGGTACTAGGATCAAATTTACCTTCTGATTCATCCCATCACGAGTTAGTACTTTCACAAGAATCAAACTGGATATTG</gDNA_template>
            <first_frame> R  I  L  C  L  T  *  S  I  T  Y  K  N  F  *  F  D  *  P  Q  V  L  R  V  D  F  E  D  Y  F  L  N  I  C  L  I  F  S  S  C  H  E  L  T  H  T  F  I  S  T  N  Y  L  N  T  K  N  I  Q  V  D  N  S  T  L  P  C  F  G  R  S  S  Q  I  S  L  S  F  R  F  K  H  D  R  Q  I  K  R  V  Q  L  D  *  *  N  Q  K  K  K  K  T  L  S  N  F  V  R  Q  *  K  S  C  C  L  S  S  E  E  K  K  G  F  L  T  R  C  G  T  G  S  V  K  K  E  K  W  *  C  N  V  G  Q  L  I  S  C  P  F  W  Q  W  *  W  W  N  V  V  K  C  *  *  L  H  L  V  K  Q  P  *  M  M  D  *  T  I  L  F  M  L  F  T  I  M  P  L  V  P  F  F  F  F  L  A  *  S  S  I  D  T   : E  A  I  W  F  L  L  L  C  L  Y  C  G  D  S  S  F  L  A  C  W   : E  F  V  W  C  K  L  W  P  L  Q  V  L  S  T  A  L  L  H  W  Q  L  L  *  G  I  *  C  Q  V  L  H  F  C  L  P  S  F  S   : G  W  R  S  *  I  *  Q  R  P  A  V  K  Q  N  L  W  A  P  *  W  Q  L  W  G  H  P  S  *  H  Y  T  K  D  Q  G  Y  *  D  Q  I  Y  L  L  I  H  P  I  T  S  *  Y  F  H  K  N  Q  T  G  Y   </first_frame>
            <second_frame>  G  F  C  V  *  H  N  L  L  H  T  K  I  S  N  L  I  D  H  K  F  *  E  *  I  L  K  I  I  F  *  I  Y  V  *  Y  F  Q  V  V  M  N  *  L  I  L  S  L  V  Q  I  I  *  I  R  K  I  F  K  L  T  T  L  P  Y  P  A  L  A  A  V  V  K  F  L  F  L  L  G  L  S  T  I  G  K  *  K  G  S  N  L  I  N  E  T  K  K  K  K  K  H  Y  Q  I  L  Y  G  N  E  K  V  V  V  F  L  L  K  K  K  K  D  S  *  L  G  V  G  L  G  V  *  R  K  K  N  G  D  A  M  L  V  N  *  F  L  A  L  F  G  N  G  D  G  G  M  L  *  N  V  D  D  Y  T  W  *  S  S  H  E  *  W  I  E  Q  S  C  L  C  C  L  L  *  C  P  W  Y  P  F  S  S  S  L  L  N  L  P  *  T  Q  :  K  Q  Y  G  S  Y  Y  F  A  Y  I  V  E  I  L  P  S  W  P  V  G  :  N  L  F  G  A  S  C  G  L  Y  R  Y  *  V  Q  H  S  Y  T  G  S  C  F  R  E  F  D  A  R  F  Y  I  F  A  C  H  H  F  Q  :  D  G  E  V  R  Y  N  K  G  Q  Q  S  S  K  I  C  G  H  R  S  G  N  Y  G  G  I  H  H  D  I  I  Q  R  T  K  G  T  R  I  K  F  T  F  *  F  I  P  S  R  V  S  T  F  T  R  I  K  L  D  I  </second_frame>
            <third_frame>   D  F  V  F  D  I  I  Y  Y  I  Q  K  F  L  I  *  L  T  T  S  S  K  S  R  F  *  R  L  F  F  K  Y  M  F  D  I  F  K  L  S  *  T  N  S  Y  F  H  *  Y  K  L  F  K  Y  E  K  Y  S  S  *  Q  L  Y  P  T  L  L  W  P  Q  *  S  N  F  S  F  F  *  V  *  A  R  *  A  N  K  K  G  P  T  *  L  M  K  P  K  K  K  K  N  I  I  K  F  C  T  A  M  K  K  L  L  S  F  F  *  R  K  K  R  I  L  D  *  V  W  D  W  E  C  K  E  R  K  M  V  M  Q  C  W  S  T  D  F  L  P  F  L  A  M  V  M  V  E  C  C  E  M  L  M  I  T  L  G  K  A  A  M  N  D  G  L  N  N  L  V  Y  V  V  Y  Y  N  A  L  G  T  L  F  L  L  P  C  L  I  F  H  R  H  R :   S  N  M  V  P  I  T  L  P  I  L  W  R  F  F  L  L  G  L  L  G :   I  C  L  V  Q  A  V  A  F  T  G  I  K  Y  S  T  P  T  L  A  A  A  L  G  N  L  M  P  G  F  T  F  L  L  A  I  I  F  R :   M  E  K  L  D  I  T  K  A  S  S  Q  A  K  S  V  G  T  V  V  A  I  M  G  A  S  I  M  T  L  Y  K  G  P  R  V  L  G  S  N  L  P  S  D  S  S  H  H  E  L  V  L  S  Q  E  S  N  W  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37250" stop="37473"/>
                    <exon start="37551" stop="37613"/>
                    <exon start="37689" stop="37805"/>
                    <exon start="38397" stop="38577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWDWECKERKMVMQCWSTDFLPFLAMVMVECCEMLMITLGKAAMNDGLNNLVYVVYYNALGTLFLLPCLIFHRHRSNMVPITLPILWRFFLLGLLGICLVQAVAFTGIKYSTPTLAAALGNLMPGFTFLLAIIFRMEKLDITKASSQAKSVGTVVAIMGASIMTLYKGPRVLGSNLPSDSSHHELVLSQESNWIL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36930" stop="37154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQVLRVDFEDYFLNICLIFSSCHELTHTFISTNYLNTKNIQVDNSTLPCFGRSSQISLSFRFKHDRQIKRVQLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="39044" PGL_stop="39888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39044" e_stop="39136"/>
            <exon e_start="39250" e_stop="39401"/>
            <exon e_start="39728" e_stop="39888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.919" e_score="0.849"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.941"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.849">
            <gDNA_exon_boundary e_start="39044" e_stop="39136" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.919">
            <gDNA_intron_boundary i_start="39137" i_stop="39249" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="39250" e_stop="39401" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="39402" i_stop="39727" i_length="326"/>
          </intron>
          <exon e_serial="3" e_score="0.907">
            <gDNA_exon_boundary e_start="39728" e_stop="39888" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39044" stop="39136"/>
              <exon start="39250" stop="39401"/>
              <exon start="39728" stop="39888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAATGTGCAATTTTAACTCTGGCATTAGAAAGCAATCCAAAGACATGGATGGTGAAGCCTGGGATTGGGATGATAGCCATTGTTTTCTCC : GCGGTTTCCGGAAGTGTCTTCCGTTACAACGTTTTGACATGGTGCTTAGACAAGAAAGGTCCTCTTTATGTGGCCATGTTCAAGCCCTTGGGAATGGTCATATCAGCAATCCTGGGGATCATATTCCTTGCAGATCCACTCCATTTAGGAAG : TGTTATTGGAGCAGTAATTATAACTGCTGGATTTTATTCTGTTCTGTGGGGGAAGGCTAAGGAGATCAAGTCCATGGTTGAAGTTGAGGACATTGTTTGTGTAATTGACTCAACAGATCAAACAAGCCCTCTATTGCACAAGTAACTTGTGGCAAGAAAAA</gDNA_template>
            <first_frame> I  Q  C  A  I  L  T  L  A  L  E  S  N  P  K  T  W  M  V  K  P  G  I  G  M  I  A  I  V  F  S  :  A  V  S  G  S  V  F  R  Y  N  V  L  T  W  C  L  D  K  K  G  P  L  Y  V  A  M  F  K  P  L  G  M  V  I  S  A  I  L  G  I  I  F  L  A  D  P  L  H  L  G  S :   V  I  G  A  V  I  I  T  A  G  F  Y  S  V  L  W  G  K  A  K  E  I  K  S  M  V  E  V  E  D  I  V  C  V  I  D  S  T  D  Q  T  S  P  L  L  H  K  *  L  V  A  R  K  </first_frame>
            <second_frame>  F  N  V  Q  F  *  L  W  H  *  K  A  I  Q  R  H  G  W  *  S  L  G  L  G  *  *  P  L  F  S  P :   R  F  P  E  V  S  S  V  T  T  F  *  H  G  A  *  T  R  K  V  L  F  M  W  P  C  S  S  P  W  E  W  S  Y  Q  Q  S  W  G  S  Y  S  L  Q  I  H  S  I  *  E   : V  L  L  E  Q  *  L  *  L  L  D  F  I  L  F  C  G  G  R  L  R  R  S  S  P  W  L  K  L  R  T  L  F  V  *  L  T  Q  Q  I  K  Q  A  L  Y  C  T  S  N  L  W  Q  E  K </second_frame>
            <third_frame>   S  M  C  N  F  N  S  G  I  R  K  Q  S  K  D  M  D  G  E  A  W  D  W  D  D  S  H  C  F  L   : R  G  F  R  K  C  L  P  L  Q  R  F  D  M  V  L  R  Q  E  R  S  S  L  C  G  H  V  Q  A  L  G  N  G  H  I  S  N  P  G  D  H  I  P  C  R  S  T  P  F  R  K  :  C  Y  W  S  S  N  Y  N  C  W  I  L  F  C  S  V  G  E  G  *  G  D  Q  V  H  G  *  S  *  G  H  C  L  C  N  *  L  N  R  S  N  K  P  S  I  A  Q  V  T  C  G  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39044" stop="39136"/>
                    <exon start="39250" stop="39401"/>
                    <exon start="39728" stop="39872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQCAILTLALESNPKTWMVKPGIGMIAIVFSAVSGSVFRYNVLTWCLDKKGPLYVAMFKPLGMVISAILGIIFLADPLHLGSVIGAVIITAGFYSVLWGKAKEIKSMVEVEDIVCVIDSTDQTSPLLHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39046" stop="39136"/>
                    <exon start="39250" stop="39401"/>
                    <exon start="39728" stop="39787"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMCNFNSGIRKQSKDMDGEAWDWDDSHCFLRGFRKCLPLQRFDMVLRQERSSLCGHVQALGNGHISNPGDHIPCRSTPFRKCYWSSNYNCWILFCSVGEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="41902" PGL_stop="45586"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41902" e_stop="42366"/>
            <exon e_start="42463" e_stop="42528"/>
            <exon e_start="43397" e_stop="43510"/>
            <exon e_start="44124" e_stop="44361"/>
            <exon e_start="44554" e_stop="44712"/>
            <exon e_start="44818" e_stop="44969"/>
            <exon e_start="45052" e_stop="45586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.704" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41902" e_stop="42366" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.704">
            <gDNA_intron_boundary i_start="42367" i_stop="42462" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42463" e_stop="42528" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42529" i_stop="43396" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43397" e_stop="43510" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43511" i_stop="44123" i_length="613"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44124" e_stop="44361" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.847">
            <gDNA_intron_boundary i_start="44362" i_stop="44553" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44554" e_stop="44712" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.756">
            <gDNA_intron_boundary i_start="44713" i_stop="44817" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44818" e_stop="44969" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="44970" i_stop="45051" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="45052" e_stop="45586" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41902" stop="42366"/>
              <exon start="42463" stop="42509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41993" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42008" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42009" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42019" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42019" stop="42216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42022" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42026" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44361"/>
              <exon start="44554" stop="44652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42039" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42044" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42085" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42110" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42128" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44361"/>
              <exon start="44554" stop="44630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42172" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44361"/>
              <exon start="44554" stop="44658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42254" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42307" stop="42366"/>
              <exon start="42463" stop="42528"/>
              <exon start="43397" stop="43510"/>
              <exon start="44124" stop="44361"/>
              <exon start="44554" stop="44712"/>
              <exon start="44818" stop="44943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44579" stop="44712"/>
              <exon start="44818" stop="44969"/>
              <exon start="45052" stop="45415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44580" stop="44712"/>
              <exon start="44818" stop="44969"/>
              <exon start="45052" stop="45451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44964" stop="44969"/>
              <exon start="45052" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG : ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG : GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG : GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG : ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT : GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG : CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</gDNA_template>
            <first_frame> F  N  V  G  P  *  E  *  K  K  S  V  K  N  F  I  F  N  F  P  Y  K  T  *  L  K  K  Q  L  L  Q  F  Q  C  K  L  S  *  K  K  N  S  Y  F  N  P  G  P  *  H  I  V  F  I  E  H  T  H  S  Y  E  *  I  S  D  F  *  V  K  L  M  S  A  T  R  R  S  *  R  F  *  R  K  K  Q  R  K  N  G  K  Q  *  Q  R  D  N  F  L  Q  R  S  A  T  I  C  S  Y  G  D  Y  G  M  Y  K  C  W  I  K  Y  A  L  Q  S  C  Y  *  Q  R  H  E  *  S  C  L  C  C  L  *  L  W  S  C  G  S  S  A  S  S  F  S  F  L  L  H  Q  :  I  K  N  S  S  T  S  Q  L  L  D  S  C  Q  N  L  S  S  W  S  Y  R  :  V  Y  I  T  D  N  G  V  Y  R  H  Y  L  C  L  S  N  A  C  L  R  H  Q  Q  S  R  P  C  F  Y  F  R  L  G  C  H  F  Q  :  D  G  E  D  T  V  E  K  I  N  H  S  S  Q  S  V  G  H  G  G  V  H  S  W  S  I  R  S  N  S  V  Q  R  P  K  N  I  S  A  Y  H  S  H  T  Q  F  T  T  S  T  S  Q  L  I  S  I  E  L  D  A  W  W  P  F  P  H  N  *  I  F  F  S  P  N  V  V  Y  S  S   : D  M  D  Y  E  G  V  S  S  R  S  D  G  S  F  L  L  Q  L  N  C  *  H  P  S  C  Y  C  R  I  F  I  *  T  *  L  K  Q  M  D  N  *  T  G  Y  R  T  G  L  H  P  L  L   : W  N  I  G  F  I  L  K  *  Y  N  S  H  L  G  F  A  R  E  R  T  S  I  C  S  N  V  *  T  I  V  H  R  D  C  S  C  H  G  S  H  S  L  R  R  Y  S  L  F  G  K  :  H  R  W  S  N  G  N  C  N  W  I  L  Y  G  N  V  G  K  G  K  R  D  V  *  I  *  *  F  *  *  S  R  V  V  S  R  S  K  V  P  L  V  T  Q  L  Q  K  *  R  H  L  K  Q  V  N  H  *  F  E  S  R  M  G  R  H  T  K  G  R  K  N  Y  T  I  F  Y  E  P  K  T  S  M  G  L  Y  R  K  K  Q  Y  A  V  M  G  K  K  G  V  A  K  L  L  A  Y  I  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  </first_frame>
            <second_frame>  S  M  *  D  L  R  N  K  K  K  V  *  K  I  S  S  L  I  F  P  I  K  L  S  *  K  N  S  C  F  N  F  N  V  S  L  A  E  K  K  T  V  T  L  I  L  D  H  N  I  S  Y  L  L  N  T  H  T  R  M  N  K  Y  Q  I  F  R  *  S  S  C  P  P  R  V  E  V  E  D  F  E  E  K  N  R  G  K  M  G  S  N  N  R  E  T  T  F  Y  K  E  V  L  P  F  A  A  M  V  T  M  E  C  I  N  V  G  L  N  T  L  Y  K  A  A  T  N  K  G  M  S  N  H  V  F  V  V  Y  S  Y  G  L  A  A  L  L  L  L  P  S  P  F  F  S  T  R :   S  R  I  L  P  P  L  N  C  S  I  L  A  K  I  F  L  L  G  V  I  G :   C  T  S  Q  I  M  G  Y  T  G  I  I  Y  A  S  P  T  L  A  S  A  I  S  N  L  V  P  A  F  T  F  V  L  A  V  I  F  R :   M  E  K  I  Q  L  K  R  S  T  T  R  A  K  V  L  G  T  V  V  S  I  A  G  A  F  V  V  T  L  Y  K  G  P  K  I  L  V  P  T  T  A  T  P  N  L  L  R  Q  P  L  S  S  S  Q  S  N  W  M  L  G  G  L  F  L  T  T  E  Y  F  L  V  P  M  W  Y  I  V  Q  :  T  W  I  M  K  V  Y  P  A  E  V  T  V  V  F  F  Y  N  L  T  V  S  I  L  A  A  I  V  G  F  L  S  E  P  D  S  N  K  W  I  I  K  P  D  I  A  L  A  S  I  L  C  S  :  G  I  L  G  S  S  L  N  N  T  I  H  T  W  A  L  R  V  K  G  P  V  Y  V  A  M  F  K  P  L  S  I  A  I  A  V  A  M  G  V  I  L  L  G  D  T  L  Y  L  G  S :   I  V  G  A  T  V  I  A  I  G  F  Y  T  V  M  W  G  K  A  K  E  M  S  E  Y  N  D  S  S  D  L  E  S  S  P  D  Q  K  F  P  L  L  H  N  Y  K  N  E  G  I  S  N  K  *  T  I  S  L  K  A  E  W  D  V  T  Q  K  A  G  K  I  T  P  S  F  M  N  Q  K  R  V  W  G  C  T  G  R  N  N  M  P  L  W  E  K  K  E  *  Q  N  C  W  H  I  Y  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D </second_frame>
            <third_frame>   Q  C  R  T  L  G  I  K  K  K  C  K  K  F  H  L  *  F  S  L  *  N  L  A  K  K  T  V  A  S  I  S  M  *  A  *  L  K  K  K  Q  L  L  *  S  W  T  I  T  Y  R  I  Y  *  T  H  T  L  V  *  I  N  I  R  F  L  G  K  A  H  V  R  H  A  *  K  L  K  I  L  K  K  K  T  E  E  K  W  E  A  I  T  E  R  Q  L  F  T  K  K  C  Y  H  L  Q  L  W  *  L  W  N  V  *  M  L  D  *  I  R  F  T  K  L  L  L  T  K  A  *  V  I  M  S  L  L  F  I  V  M  V  L  R  L  F  C  F  F  L  L  L  S  S  P  P   : D  Q  E  F  F  H  L  S  I  A  R  F  L  P  K  S  F  F  L  E  L  S   : G  V  H  H  R  *  W  G  I  Q  A  L  S  M  P  L  Q  R  L  P  P  P  S  A  I  S  S  L  L  L  L  S  S  W  L  S  F  S   : G  W  R  R  Y  S  *  K  D  Q  P  L  E  P  K  C  W  A  R  W  C  P  *  L  E  H  S  *  *  L  C  T  K  A  Q  K  Y  *  C  L  P  Q  P  H  P  I  Y  Y  V  N  L  S  A  H  L  N  R  I  G  C  L  V  A  F  S  S  Q  L  N  I  F  *  S  Q  C  G  I  *  F  R :   H  G  L  *  R  C  I  Q  Q  K  *  R  *  F  S  S  T  T  *  L  L  A  S  *  L  L  L  *  D  F  Y  L  N  L  T  Q  T  N  G  *  L  N  R  I  S  H  W  P  P  S  S  A  L :   E  Y  W  V  H  P  *  I  I  Q  F  T  P  G  L  C  A  *  K  D  Q  Y  M  *  Q  C  L  N  H  C  P  S  R  L  Q  L  P  W  E  S  F  S  *  E  I  L  F  I  W  E   : A  S  L  E  Q  R  *  L  Q  L  D  S  I  R  *  C  G  E  R  Q  K  R  C  L  N  I  M  I  L  V  I  S  S  R  L  Q  I  K  S  S  P  C  Y  T  T  T  K  M  K  A  S  Q  T  S  E  P  L  V  *  K  Q  N  G  T  S  H  K  R  Q  E  K  L  H  H  L  L  *  T  K  N  E  Y  G  V  V  Q  E  E  T  I  C  R  Y  G  K  K  R  S  S  K  I  V  G  I  Y  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42107" stop="42366"/>
                    <exon start="42463" stop="42528"/>
                    <exon start="43397" stop="43510"/>
                    <exon start="44124" stop="44361"/>
                    <exon start="44554" stop="44712"/>
                    <exon start="44818" stop="44969"/>
                    <exon start="45052" stop="45214"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCPPRVEVEDFEEKNRGKMGSNNRETTFYKEVLPFAAMVTMECINVGLNTLYKAATNKGMSNHVFVVYSYGLAALLLLPSPFFSTRSRILPPLNCSILAKIFLLGVIGCTSQIMGYTGIIYASPTLASAISNLVPAFTFVLAVIFRMEKIQLKRSTTRAKVLGTVVSIAGAFVVTLYKGPKILVPTTATPNLLRQPLSSSQSNWMLGGLFLTTEYFLVPMWYIVQTWIMKVYPAEVTVVFFYNLTVSILAAIVGFLSEPDSNKWIIKPDIALASILCSGILGSSLNNTIHTWALRVKGPVYVAMFKPLSIAIAVAMGVILLGDTLYLGSIVGATVIAIGFYTVMWGKAKEMSEYNDSSDLESSPDQKFPLLHNYKNEGISNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45282" stop="45584"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNEYGVVQEETICRYGKKRSSKIVGIYIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="51525" PGL_stop="56137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51525" e_stop="51669"/>
            <exon e_start="51813" e_stop="52076"/>
            <exon e_start="52671" e_stop="52820"/>
            <exon e_start="53079" e_stop="53212"/>
            <exon e_start="53322" e_stop="53535"/>
            <exon e_start="53698" e_stop="53843"/>
            <exon e_start="53930" e_stop="54154"/>
            <exon e_start="54243" e_stop="54445"/>
            <exon e_start="54588" e_stop="54831"/>
            <exon e_start="54912" e_stop="55279"/>
            <exon e_start="56107" e_stop="56137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.012" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.645"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51525" e_stop="51669" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.012">
            <gDNA_intron_boundary i_start="51670" i_stop="51812" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51813" e_stop="52076" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52077" i_stop="52670" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52671" e_stop="52820" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53079" e_stop="53212" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53322" e_stop="53535" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53698" e_stop="53843" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53930" e_stop="54154" e_length="225"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54243" e_stop="54445" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54588" e_stop="54831" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="54912" e_stop="55279" e_length="368"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55280" i_stop="56106" i_length="827"/>
          </intron>
          <exon e_serial="11" e_score="0.645">
            <gDNA_exon_boundary e_start="56107" e_stop="56137" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51525" stop="51669"/>
              <exon start="51813" stop="51882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51669"/>
              <exon start="51813" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51535" stop="51669"/>
              <exon start="51813" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51535" stop="51669"/>
              <exon start="51813" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51543" stop="51669"/>
              <exon start="51813" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51556" stop="51669"/>
              <exon start="51813" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53212"/>
              <exon start="53322" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51618" stop="51669"/>
              <exon start="51813" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53212"/>
              <exon start="53322" stop="53397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51947" stop="52076"/>
              <exon start="52671" stop="52820"/>
              <exon start="53079" stop="53212"/>
              <exon start="53322" stop="53399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53212"/>
              <exon start="53322" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53477" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53477" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54257" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432703" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54282" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54831"/>
              <exon start="54912" stop="55279"/>
              <exon start="56107" stop="56137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54681" stop="54831"/>
              <exon start="54912" stop="55214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420484" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG : ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG : TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG : GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG : AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG : GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA : AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT : CAAAAATCAACATGAAATATCTAAAATAAAA</gDNA_template>
            <first_frame> L  Q  V  I  L  I  S  R  I  N  N  V  F  C  Y  A  Q  E  S  L  A  I  L  S  P  *  I  H  P  Q  R  F  P  *  D  L  *  Q  N  D  S  H  R  *  I  I  F  F   : D  C  S  F  Y  *  *  T  *  L  L  A  P  A  T  G  I  L  R  V  T  L  S  W  S  T  A  E  S  S  P  A  I  *  F  D  Q  R  R  *  N  T  Y  R  S  S  I  K  S  G  R  L  P  L  Q  N  C  *  W  K  I  Q  *  P  F  *  *  R  N  R  Q  S  I  F  F  L  W  Q  E  Y  D  A  S  S  S  E  *  *   : V  K  K  A  R  S  N  G  S  S  N  E  A  S  S  T  K  K  I  H  R  H  W  K  T  I  Q  Y  D  S  C  F  L  D  T  V  Y  G  S  *  L  D  R  S  F  G  R  Y  S  T   : G  *  A  K  G  T  K  R  S  C  *  *  M  P  T  Q  V  L  *  V  *  Q  I  Q  R  N  S  Y  R  F  L  *  N  Q  N  R  S  L  E  Q  P  Y  S  L  V  :  G  R  K  C  N  L  W  K  *  R  G  C  F  E  E  S  E  N  I  *  R  R  K  T  E  I  R  *  K  W  T  H  P  T  R  *  K  W  K  N  Y  L  W  *  C  S  *  H  L  G  W  T  F  N  A  S  S  S  L  C  S  R  A  Q  C  C  L  *  H  F  E   : E  R  I  S  R  I  R  G  *  R  V  V  S  S  C  K  A  S  H  F  S  C  N  C  K  S  S  H  H  R  L  D  C  S  A  S  E  N  R  Y  Y  A  C  R  N  A  C  Q  L  :  V  W  I  T  R  K  E  V  Q  G  Y  I  W  S  C  W  F  H  F  K  W  C  C  W  N  E  E  T  *  E  S  W  S  A  L  F  L  N  *  R  I  Y  E  C  L  *  N  A  S  T  V  T  *  Y  T  S  A  K  K  Y  R  C  H  A  W  A  K  Q  I  S  S  F  N  *  *  :  N  S  H  G  R  S  S  W  E  *  R  K  R  E  F  I  K  N  W  V  Y  *  A  N  G  F  N  G  A  S  S  *  W  S  S  *  A  L  E  L  S  S  V  D  E  R  S  Y  C  P  R  C  *  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  G  *  R  K  K  C  S  *  V  Q  *  L  *  K  R  N  A  S  N  S  Y  F  E  M  G  R  F  D  R  *  *  R  S  N  Q  N  T  W  *  S  I  *  *  *  Y  R  R  V  G  F  I  S  G  T  H  G  G  E  K  N  *  R  I  C  H  F  R  N  S  L  Q  H  I  P  S  H  G  Y  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  *  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  K  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  *  S  Y  S  T  L  F  S  C  S  S  V  V  D  L  K  I  M  C  V  T  I  Y  *  Y  R  N  T  Y  K  F  V  F  K  V  S  C  S  I  S  S  K  *  Y  I  V  S  W  S  V  K  I  T  I  S  *  *  F  V  F :   K  N  Q  H  E  I  S  K  I  K </first_frame>
            <second_frame>  Y  K  *  Y  *  F  L  V  *  T  M  S  F  V  M  L  K  N  L  L  L  S  S  L  R  K  F  I  H  K  D  F  H  E  I  F  D  K  M  T  L  I  D  K  L  F  F  L  :  I  V  H  F  I  D  K  H  N  F  W  H  R  L  P  V  F  F  G  L  L  Y  L  G  A  R  R  S  L  H  Q  Q  Y  N  L  I  N  V  G  R  T  P  T  G  V  R  S  N  P  A  D  Y  P  Y  R  T  A  D  G  K  F  N  D  P  F  N  E  G  T  G  S  Q  F  S  F  F  G  R  N  M  M  P  L  H  Q  N  N  K  :  L  K  K  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  V  H  D  W  I  D  H  L  E  D  T  Q  Q  :  V  E  L  R  A  P  K  E  V  A  N  E  C  P  L  K  S  F  R  F  N  K  S  K  E  T  P  T  D  F  Y  E  I  K  T  G  H  L  N  S  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  E  D  V  L  K  K  V  R  T  F  R  D  G  K  L  K  L  G  E  N  G  L  I  Q  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  L  L  T  L  Q  A  L  F  V  Q  E  H  N  A  V  C  D  T  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  Q  L  L  K  T  D  T  M  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  S  I  L  S  G  V  V  G  M  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  Q  L  R  N  I  D  A  T  P  G  P  N  K  S  L  P  L  T  N  E :   I  P  M  E  E  V  V  G  S  K  G  K  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  V  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  P  R  Y  N  D  F  R  R  G  M  L  Q  I  P  I  S  K  W  E  D  L  T  D  D  E  E  A  I  K  T  L  G  E  V  Y  D  D  D  I  E  E  L  D  L  L  V  G  L  M  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  N  I  F  L  L  M  A  I  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  D  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  I  P  L  Y  F  R  V  P  Q  *  *  T  S  K  S  C  V  *  L  F  I  N  T  V  I  R  T  S  L  Y  L  R  C  L  V  L  F  H  Q  N  N  I  L  Y  L  G  L  *  K  *  L  L  V  S  N  S  Y   : S  K  I  N  M  K  Y  L  K  *   </second_frame>
            <third_frame>   T  S  D  I  N  F  S  Y  K  Q  C  L  L  L  C  S  R  I  S  C  Y  P  L  S  V  N  S  S  T  K  I  S  M  R  S  L  T  K  *  L  S  S  I  N  Y  F  F  * :   L  F  I  L  L  I  N  I  T  F  G  T  G  Y  R  Y  S  S  G  Y  F  I  L  E  H  G  G  V  F  T  S  N  I  I  *  S  T  S  V  E  H  L  P  E  F  D  Q  I  R  Q  I  T  L  T  E  L  L  M  E  N  S  M  T  L  L  M  K  E  Q  A  V  N  F  L  S  L  A  G  I  *  C  L  F  I  R  I  I  S :   *  K  S  Q  I  Q  W  *  *  Q  R  S  F  *  H  E  E  N  S  *  T  L  E  N  N  S  I  *  *  L  L  L  G  Y  S  L  W  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  Q  K  K  L  L  M  N  A  H  S  S  P  L  G  L  T  N  P  K  K  L  L  Q  I  F  M  K  S  K  P  V  T  *  T  A  V  L  P  G   : G  T  E  V  *  F  M  E  V  T  R  M  F  *  R  K  *  E  H  L  E  T  E  N  *  N  *  V  K  M  D  S  S  N  K  M  K  M  E  K  L  S  L  V  M  F  V  T  L  G  L  D  F  *  R  F  K  L  S  L  F  K  S  T  M  L  F  V  T  L  *  R :   K  N  I  Q  N  *  R  M  K  S  C  I  V  M  Q  G  *  S  L  Q  L  *  L  Q  K  F  T  P  *  I  G  L  F  S  F  *  K  P  I  L  C  L  Q  E  C  V  P  I   : G  M  D  Y  *  E  R  S  S  R  I  H  L  V  M  L  V  P  F  *  V  V  L  L  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  K  N  L  R  V  F  I  E  C  I  N  C  Y  L  I  H  F  S  *  E  I  *  M  P  R  L  G  Q  T  N  L  F  L  *  L  M   : K  F  P  W  K  K  *  L  G  V  K  E  K  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  G  I  K  L  V  E  L  L  S  F  G  I  I  Q  C  G  *  E  I  L  L  P  K  M  L  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  G  I  E  K  E  V  F  L  G  T  M  T  L  E  E  E  C  F  K  F  L  F  R  N  G  K  I  *  Q  M  M  K  K  Q  S  K  H  L  V  K  Y  M  M  M  I  *  K  S  W  I  Y  *  W  D  S  W  R  R  K  K  L  K  D  L  P  F  Q  K  Q  P  S  T  Y  S  F  S  W  L  *   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  M  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  I  I  L  F  H  S  I  F  V  F  L  S  S  R  P  Q  N  H  V  C  N  Y  L  L  I  P  *  Y  V  Q  V  C  I  *  G  V  L  F  Y  F  I  K  I  I  Y  C  I  L  V  C  E  N  N  Y  *  L  V  I  R  I  :  Q  K  S  T  *  N  I  *  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51553" stop="51669"/>
                    <exon start="51813" stop="52076"/>
                    <exon start="52671" stop="52820"/>
                    <exon start="53079" stop="53212"/>
                    <exon start="53322" stop="53535"/>
                    <exon start="53698" stop="53843"/>
                    <exon start="53930" stop="54154"/>
                    <exon start="54243" stop="54445"/>
                    <exon start="54588" stop="54831"/>
                    <exon start="54912" stop="55137"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSFVMLKNLLLSSLRKFIHKDFHEIFDKMTLIDKLFFLIVHFIDKHNFWHRLPVFFGLLYLGARRSLHQQYNLINVGRTPTGVRSNPADYPYRTADGKFNDPFNEGTGSQFSFFGRNMMPLHQNNKLKKPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMVHDWIDHLEDTQQVELRAPKEVANECPLKSFRFNKSKETPTDFYEIKTGHLNSRTPWWDGSVIYGSNEDVLKKVRTFRDGKLKLGENGLIQQDENGKIISGDVRNTWAGLLTLQALFVQEHNAVCDTLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVQLLKTDTMLAGMRANWYGLLGKKFKDTFGHVGSILSGVVGMKKPENHGVPYSLTEEFTSVYRMHQLLPDTLQLRNIDATPGPNKSLPLTNEIPMEEVVGSKGKENLSRIGFTKQMVSMGHQASGALELWNYPVWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVPRYNDFRRGMLQIPISKWEDLTDDEEAIKTLGEVYDDDIEELDLLVGLMAEKKIKGFAISETAFNIFLLMAIRRLEADRFFTSNYNDETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPIPLYFRVPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52668" e_stop="52820"/>
            <exon e_start="53079" e_stop="53212"/>
            <exon e_start="53322" e_stop="53535"/>
            <exon e_start="53698" e_stop="53843"/>
            <exon e_start="53930" e_stop="54154"/>
            <exon e_start="54243" e_stop="54445"/>
            <exon e_start="54588" e_stop="54831"/>
            <exon e_start="54912" e_stop="55279"/>
            <exon e_start="56107" e_stop="56137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.645"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="52668" e_stop="52820" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52821" i_stop="53078" i_length="258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53079" e_stop="53212" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="53213" i_stop="53321" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53322" e_stop="53535" e_length="214"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53536" i_stop="53697" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53698" e_stop="53843" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53844" i_stop="53929" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53930" e_stop="54154" e_length="225"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54155" i_stop="54242" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54243" e_stop="54445" e_length="203"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54446" i_stop="54587" i_length="142"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54588" e_stop="54831" e_length="244"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="54832" i_stop="54911" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="54912" e_stop="55279" e_length="368"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55280" i_stop="56106" i_length="827"/>
          </intron>
          <exon e_serial="9" e_score="0.645">
            <gDNA_exon_boundary e_start="56107" e_stop="56137" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52668" stop="52820"/>
              <exon start="53079" stop="53212"/>
              <exon start="53322" stop="53535"/>
              <exon start="53698" stop="53765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53212"/>
              <exon start="53322" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53477" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53477" stop="53535"/>
              <exon start="53698" stop="53843"/>
              <exon start="53930" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54089" stop="54154"/>
              <exon start="54243" stop="54445"/>
              <exon start="54588" stop="54686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54257" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432703" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54282" stop="54445"/>
              <exon start="54588" stop="54831"/>
              <exon start="54912" stop="55203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54831"/>
              <exon start="54912" stop="55279"/>
              <exon start="56107" stop="56137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54681" stop="54831"/>
              <exon start="54912" stop="55214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420484" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG : GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG : AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG : GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA : AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT : CAAAAATCAACATGAAATATCTAAAATAAAA</gDNA_template>
            <first_frame> Q  L  K  K  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  V  H  D  W  I  D  H  L  E  D  T  Q  Q  :  V  E  L  R  A  P  K  E  V  A  N  E  C  P  L  K  S  F  R  F  N  K  S  K  E  T  P  T  D  F  Y  E  I  K  T  G  H  L  N  S  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  E  D  V  L  K  K  V  R  T  F  R  D  G  K  L  K  L  G  E  N  G  L  I  Q  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  L  L  T  L  Q  A  L  F  V  Q  E  H  N  A  V  C  D  T  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  Q  L  L  K  T  D  T  M  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  S  I  L  S  G  V  V  G  M  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  Q  L  R  N  I  D  A  T  P  G  P  N  K  S  L  P  L  T  N  E :   I  P  M  E  E  V  V  G  S  K  G  K  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  V  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  P  R  Y  N  D  F  R  R  G  M  L  Q  I  P  I  S  K  W  E  D  L  T  D  D  E  E  A  I  K  T  L  G  E  V  Y  D  D  D  I  E  E  L  D  L  L  V  G  L  M  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  N  I  F  L  L  M  A  I  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  D  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  I  P  L  Y  F  R  V  P  Q  *  *  T  S  K  S  C  V  *  L  F  I  N  T  V  I  R  T  S  L  Y  L  R  C  L  V  L  F  H  Q  N  N  I  L  Y  L  G  L  *  K  *  L  L  V  S  N  S  Y   : S  K  I  N  M  K  Y  L  K  *   </first_frame>
            <second_frame>  S  *  K  S  Q  I  Q  W  *  *  Q  R  S  F  *  H  E  E  N  S  *  T  L  E  N  N  S  I  *  *  L  L  L  G  Y  S  L  W  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  Q  K  K  L  L  M  N  A  H  S  S  P  L  G  L  T  N  P  K  K  L  L  Q  I  F  M  K  S  K  P  V  T  *  T  A  V  L  P  G   : G  T  E  V  *  F  M  E  V  T  R  M  F  *  R  K  *  E  H  L  E  T  E  N  *  N  *  V  K  M  D  S  S  N  K  M  K  M  E  K  L  S  L  V  M  F  V  T  L  G  L  D  F  *  R  F  K  L  S  L  F  K  S  T  M  L  F  V  T  L  *  R :   K  N  I  Q  N  *  R  M  K  S  C  I  V  M  Q  G  *  S  L  Q  L  *  L  Q  K  F  T  P  *  I  G  L  F  S  F  *  K  P  I  L  C  L  Q  E  C  V  P  I   : G  M  D  Y  *  E  R  S  S  R  I  H  L  V  M  L  V  P  F  *  V  V  L  L  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  K  N  L  R  V  F  I  E  C  I  N  C  Y  L  I  H  F  S  *  E  I  *  M  P  R  L  G  Q  T  N  L  F  L  *  L  M   : K  F  P  W  K  K  *  L  G  V  K  E  K  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  G  I  K  L  V  E  L  L  S  F  G  I  I  Q  C  G  *  E  I  L  L  P  K  M  L  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  G  I  E  K  E  V  F  L  G  T  M  T  L  E  E  E  C  F  K  F  L  F  R  N  G  K  I  *  Q  M  M  K  K  Q  S  K  H  L  V  K  Y  M  M  M  I  *  K  S  W  I  Y  *  W  D  S  W  R  R  K  K  L  K  D  L  P  F  Q  K  Q  P  S  T  Y  S  F  S  W  L  *   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  M  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  I  I  L  F  H  S  I  F  V  F  L  S  S  R  P  Q  N  H  V  C  N  Y  L  L  I  P  *  Y  V  Q  V  C  I  *  G  V  L  F  Y  F  I  K  I  I  Y  C  I  L  V  C  E  N  N  Y  *  L  V  I  R  I  :  Q  K  S  T  *  N  I  *  N  K  </second_frame>
            <third_frame>   V  K  K  A  R  S  N  G  S  S  N  E  A  S  S  T  K  K  I  H  R  H  W  K  T  I  Q  Y  D  S  C  F  L  D  T  V  Y  G  S  *  L  D  R  S  F  G  R  Y  S  T   : G  *  A  K  G  T  K  R  S  C  *  *  M  P  T  Q  V  L  *  V  *  Q  I  Q  R  N  S  Y  R  F  L  *  N  Q  N  R  S  L  E  Q  P  Y  S  L  V  :  G  R  K  C  N  L  W  K  *  R  G  C  F  E  E  S  E  N  I  *  R  R  K  T  E  I  R  *  K  W  T  H  P  T  R  *  K  W  K  N  Y  L  W  *  C  S  *  H  L  G  W  T  F  N  A  S  S  S  L  C  S  R  A  Q  C  C  L  *  H  F  E   : E  R  I  S  R  I  R  G  *  R  V  V  S  S  C  K  A  S  H  F  S  C  N  C  K  S  S  H  H  R  L  D  C  S  A  S  E  N  R  Y  Y  A  C  R  N  A  C  Q  L  :  V  W  I  T  R  K  E  V  Q  G  Y  I  W  S  C  W  F  H  F  K  W  C  C  W  N  E  E  T  *  E  S  W  S  A  L  F  L  N  *  R  I  Y  E  C  L  *  N  A  S  T  V  T  *  Y  T  S  A  K  K  Y  R  C  H  A  W  A  K  Q  I  S  S  F  N  *  *  :  N  S  H  G  R  S  S  W  E  *  R  K  R  E  F  I  K  N  W  V  Y  *  A  N  G  F  N  G  A  S  S  *  W  S  S  *  A  L  E  L  S  S  V  D  E  R  S  Y  C  P  R  C  *  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  G  *  R  K  K  C  S  *  V  Q  *  L  *  K  R  N  A  S  N  S  Y  F  E  M  G  R  F  D  R  *  *  R  S  N  Q  N  T  W  *  S  I  *  *  *  Y  R  R  V  G  F  I  S  G  T  H  G  G  E  K  N  *  R  I  C  H  F  R  N  S  L  Q  H  I  P  S  H  G  Y  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  *  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  K  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  *  S  Y  S  T  L  F  S  C  S  S  V  V  D  L  K  I  M  C  V  T  I  Y  *  Y  R  N  T  Y  K  F  V  F  K  V  S  C  S  I  S  S  K  *  Y  I  V  S  W  S  V  K  I  T  I  S  *  *  F  V  F :   K  N  Q  H  E  I  S  K  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52668" stop="52820"/>
                    <exon start="53079" stop="53212"/>
                    <exon start="53322" stop="53535"/>
                    <exon start="53698" stop="53843"/>
                    <exon start="53930" stop="54154"/>
                    <exon start="54243" stop="54445"/>
                    <exon start="54588" stop="54831"/>
                    <exon start="54912" stop="55137"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1542</number_coding_nucleotides>
                  <number_encoded_amino_acids>514</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLKKPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMVHDWIDHLEDTQQVELRAPKEVANECPLKSFRFNKSKETPTDFYEIKTGHLNSRTPWWDGSVIYGSNEDVLKKVRTFRDGKLKLGENGLIQQDENGKIISGDVRNTWAGLLTLQALFVQEHNAVCDTLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVQLLKTDTMLAGMRANWYGLLGKKFKDTFGHVGSILSGVVGMKKPENHGVPYSLTEEFTSVYRMHQLLPDTLQLRNIDATPGPNKSLPLTNEIPMEEVVGSKGKENLSRIGFTKQMVSMGHQASGALELWNYPVWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVPRYNDFRRGMLQIPISKWEDLTDDEEAIKTLGEVYDDDIEELDLLVGLMAEKKIKGFAISETAFNIFLLMAIRRLEADRFFTSNYNDETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPIPLYFRVPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="63951" PGL_stop="66904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63996" e_stop="64109"/>
            <exon e_start="64247" e_stop="64510"/>
            <exon e_start="64603" e_stop="64752"/>
            <exon e_start="64820" e_stop="64956"/>
            <exon e_start="65047" e_stop="65260"/>
            <exon e_start="65326" e_stop="65471"/>
            <exon e_start="65551" e_stop="65778"/>
            <exon e_start="65854" e_stop="66056"/>
            <exon e_start="66127" e_stop="66370"/>
            <exon e_start="66449" e_stop="66904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63996" e_stop="64109" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.935">
            <gDNA_intron_boundary i_start="64110" i_stop="64246" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64247" e_stop="64510" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64603" e_stop="64752" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64753" i_stop="64819" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64820" e_stop="64956" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.884" acc_prob="0.906">
            <gDNA_intron_boundary i_start="64957" i_stop="65046" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65047" e_stop="65260" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65326" e_stop="65471" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65551" e_stop="65778" e_length="228"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65854" e_stop="66056" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="66057" i_stop="66126" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66127" e_stop="66370" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="66449" e_stop="66904" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63996" stop="64109"/>
              <exon start="64247" stop="64510"/>
              <exon start="64603" stop="64752"/>
              <exon start="64820" stop="64956"/>
              <exon start="65047" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="66056"/>
              <exon start="66127" stop="66370"/>
              <exon start="66449" stop="66677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65068" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="66056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65069" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65142" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="65981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65154" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="65918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65195" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66130" stop="66370"/>
              <exon start="66449" stop="66701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66245" stop="66370"/>
              <exon start="66449" stop="66904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66246" stop="66370"/>
              <exon start="66449" stop="66813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG : ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG : GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG : AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG : GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA : AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA : TTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</gDNA_template>
            <first_frame> M  T  M  I  M  L  K  N  L  L  F  S  P  L  R  G  F  I  H  K  D  F  H  Q  I  L  D  K  M  N  L  R  D  K  L  S  F  L  :  I  V  H  I  I  D  K  H  N  L  W  H  R  V  P  V  F  L  G  L  V  Y  L  A  L  R  R  H  L  N  Q  E  Y  N  L  I  N  V  G  R  T  P  S  G  V  R  S  N  P  G  D  F  P  Y  R  T  A  D  G  K  Y  N  D  P  F  N  E  G  A  G  S  E  F  S  F  F  G  R  N  M  M  P  V  E  Q  H  D  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  E  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  E  L  R  A  P  E  E  V  A  S  Q  C  P  L  K  S  F  K  F  Y  K  S  K  E  T  P  T  G  F  Y  E  I  K  T  G  H  L  N  R  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  V  E  I  L  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  F  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  V  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  E  L  L  K  T  D  T  L  F  A  A  M  R  T  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  A  I  L  G  G  L  V  G  L  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  V  S  V  Y  R  M  H  Q  L  L  P  D  K  L  Q  L  R  N  I  D  A  T  S  G  P  N  K  S  I  P  L  T  N  E :   I  P  M  G  D  L  I  G  G  K  G  E  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  C  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  H  H  V  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  T  D  D  M  E  V  I  K  T  L  H  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  L  M  A  S  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  V  P  L  Y  F  R  V  P  K  H  *  T  N  N  T  *  F  I  Y  L  S  K  M  K  Y  E  E  L  C  G  I  F  P  F  L  R  N  C  F  S  L  L  N  *  *  C  V  S  I  Y  L  Y  L  M  F  L  D  K  I  I  V  I  F  I  F  Y  V  *  C  S  C  V  T  L  L  I  *  R  Q  K  T  F  F  F  I  S   </first_frame>
            <second_frame>  *  L  *  L  C  *  R  I  S  C  S  P  L  F  V  V  S  S  T  K  I  F  I  R  Y  L  T  K  *  I  S  A  T  N  F  H  F  * :   *  F  I  S  L  I  N  I  T  C  G  T  G  Y  R  C  F  *  G  *  F  I  L  H  F  V  D  I  L  I  R  N  I  I  *  S  T  W  V  E  H  R  A  E  S  D  R  I  R  A  T  S  L  I  E  Q  Q  M  E  N  I  M  I  L  S  M  K  E  Q  E  V  N  F  L  S  L  G  G  I  *  C  L  L  S  N  M  T  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  S  C  *  H  G  E  N  S  *  T  L  E  N  N  L  T  *  *  L  H  H  G  Y  S  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  R  S  L  G  H  L  K  K  L  Q  V  N  V  L  S  S  P  L  S  F  T  N  Q  K  K  L  L  P  D  F  T  K  L  K  P  V  I  *  I  G  V  P  L  G   : G  M  E  V  L  F  M  G  A  T  *  R  S  *  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  D  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  I  L  G  L  D  L  *  H  C  K  R  S  L  Y  K  S  I  I  L  F  V  M  S  *  R :   K  N  I  Q  N  W  K  M  K  S  C  I  V  M  Q  D  W  *  L  L  L  L  L  Q  K  F  T  Q  *  I  G  L  S  S  F  L  K  Q  T  P  Y  L  Q  Q  C  E  P  I   : G  M  D  C  *  G  R  N  L  K  I  H  L  G  T  L  E  V  Q  F  W  V  V  *  *  D  *  K  N  P  K  I  M  E  C  L  I  P  *  L  K  N  L  *  V  C  I  E  C  I  N  S  Y  L  I  N  F  S  *  E  I  *  M  Q  L  L  D  Q  I  N  L  S  L  *  L  T   : K  S  Q  W  E  I  *  S  E  A  K  E  R  R  I  Y  Q  E  S  D  L  L  S  R  W  F  Q  W  G  I  K  H  V  E  L  L  S  F  G  I  I  Q  Y  G  *  G  I  L  L  L  K  M  L  M  E  Q  T  G  H  I  M  L  T  L  Q  H  S  K  :  F  I  E  T  E  K  E  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  R  M  I  W  K  L  L  K  H  F  M  K  F  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  K  D  L  P  S  L  R  L  H  F  S  Y  S  F  S  W  H  Q   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  R  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  T  I  L  F  H  S  T  F  V  F  L  N  I  K  L  I  I  P  N  L  F  T  Y  R  K  *  N  M  K  N  C  V  V  Y  F  R  F  Y  V  I  V  S  V  C  *  I  N  D  V  Y  L  S  I  F  I  *  C  F  L  I  R  *  L  *  S  L  Y  F  M  Y  N  V  L  V  L  L  F  L  F  N  V  K  K  L  F  F  L  Y  Q  </second_frame>
            <third_frame>   D  Y  D  Y  A  E  E  S  L  V  L  P  S  S  W  F  H  P  Q  R  F  S  S  D  T  *  Q  N  E  S  P  R  Q  T  F  I  S   : D  S  S  Y  H  *  *  T  *  L  V  A  P  G  T  G  V  F  R  A  S  L  S  C  T  S  S  T  S  *  S  G  I  *  F  D  Q  R  G  *  N  T  E  R  S  P  I  E  S  G  R  L  P  L  *  N  S  R  W  K  I  *  *  S  F  Q  *  R  S  R  K  *  I  F  F  L  W  E  E  Y  D  A  C  *  A  T  *  Q   : V  K  E  S  R  S  N  G  S  G  N  K  A  A  S  T  E  R  I  H  R  H  W  K  T  I  *  H  D  S  C  I  M  D  T  V  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  G  A  *  G  T  *  R  S  C  K  S  M  S  S  Q  V  L  *  V  L  Q  I  K  R  N  S  Y  R  I  L  R  N  *  N  R  S  F  E  *  A  Y  P  L  V  :  G  W  K  C  Y  L  W  E  Q  R  R  D  L  E  E  S  K  D  I  *  R  R  K  I  E  T  I  R  K  W  T  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  Y  L  G  W  I  C  N  T  A  S  A  L  C  T  R  A  *  S  C  L  *  C  L  E   : E  R  I  S  R  I  G  R  *  R  V  V  S  S  C  K  T  G  D  F  C  C  Y  C  K  S  S  H  N  R  L  D  C  R  A  S  *  N  R  H  L  I  C  S  N  A  N  Q  L  :  V  W  I  A  R  E  E  I  *  R  Y  I  W  A  R  W  R  C  N  F  G  W  F  S  R  T  K  K  T  R  K  S  W  S  A  L  F  L  N  *  R  I  C  E  C  V  S  N  A  S  T  L  T  *  *  T  S  V  K  K  Y  R  C  N  F  W  T  K  *  I  Y  P  F  D  *  R  :  N  P  N  G  R  F  N  R  R  Q  R  R  G  E  F  I  K  N  R  I  Y  *  A  D  G  F  N  G  A  S  S  M  W  S  S  *  A  L  E  L  S  N  M  D  E  G  S  Y  C  S  R  C  *  W  N  R  Q  A  T  S  C  *  P  C  S  T  R  N :   L  *  R  Q  R  K  K  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  D  G  *  Y  G  S  Y  *  N  T  S  *  S  L  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  R  I  C  H  L  *  D  C  I  F  H  I  P  S  H  G  I  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  G  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  E  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  Q  S  C  S  T  L  L  S  C  S  *  T  L  N  *  *  Y  L  I  Y  L  L  I  E  N  E  I  *  R  I  V  W  Y  I  S  V  F  T  *  L  F  Q  F  V  K  L  M  M  C  I  Y  L  S  L  F  N  V  S  *  *  D  N  C  N  L  Y  I  L  C  I  M  F  L  C  Y  S  S  Y  L  T  S  K  N  F  F  F  Y  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63996" stop="64109"/>
                    <exon start="64247" stop="64510"/>
                    <exon start="64603" stop="64752"/>
                    <exon start="64820" stop="64956"/>
                    <exon start="65047" stop="65260"/>
                    <exon start="65326" stop="65471"/>
                    <exon start="65551" stop="65778"/>
                    <exon start="65854" stop="66056"/>
                    <exon start="66127" stop="66370"/>
                    <exon start="66449" stop="66677"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1926</number_coding_nucleotides>
                  <number_encoded_amino_acids>642</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTMIMLKNLLFSPLRGFIHKDFHQILDKMNLRDKLSFLIVHIIDKHNLWHRVPVFLGLVYLALRRHLNQEYNLINVGRTPSGVRSNPGDFPYRTADGKYNDPFNEGAGSEFSFFGRNMMPVEQHDKLKNPDPMVVATKLLARREFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIEELRAPEEVASQCPLKSFKFYKSKETPTGFYEIKTGHLNRRTPWWDGSVIYGSNVEILKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNTWAGFVTLQALFVQEHNLVCDVLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLFAAMRTNWYGLLGKKFKDTFGHVGGAILGGLVGLKKPENHGVPYSLTEEFVSVYRMHQLLPDKLQLRNIDATSGPNKSIPLTNEIPMGDLIGGKGEENLSRIGFTKQMVSMGHQACGALELWNYPIWMRDLIAQDVDGTDRPHHVDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLTDDMEVIKTLHEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPVPLYFRVPKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65068" e_stop="65260"/>
            <exon e_start="65326" e_stop="65471"/>
            <exon e_start="65551" e_stop="65778"/>
            <exon e_start="65854" e_stop="66056"/>
            <exon e_start="66134" e_stop="66370"/>
            <exon e_start="66449" e_stop="66904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.014" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65068" e_stop="65260" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65326" e_stop="65471" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65472" i_stop="65550" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65551" e_stop="65778" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65779" i_stop="65853" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65854" e_stop="66056" e_length="203"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.014">
            <gDNA_intron_boundary i_start="66057" i_stop="66133" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66134" e_stop="66370" e_length="237"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66371" i_stop="66448" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="66449" e_stop="66904" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65068" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="66056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65069" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65142" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="65981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65154" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="65918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65194" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65778"/>
              <exon start="65854" stop="66056"/>
              <exon start="66134" stop="66268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65195" stop="65260"/>
              <exon start="65326" stop="65471"/>
              <exon start="65551" stop="65758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65923" stop="66056"/>
              <exon start="66134" stop="66370"/>
              <exon start="66449" stop="66827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66245" stop="66370"/>
              <exon start="66449" stop="66904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66246" stop="66370"/>
              <exon start="66449" stop="66813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG : AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG : GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGTTAAGAAATATAGATGCAACTTCTGGACCAAATAAATCTATCCCTTTGACTAACGA : AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTGACCTTGCAGCACTCGAAA : AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</gDNA_template>
            <first_frame> E  Q  R  R  D  L  E  E  S  K  D  I  *  R  R  K  I  E  T  I  R  K  W  T  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  Y  L  G  W  I  C  N  T  A  S  A  L  C  T  R  A  *  S  C  L  *  C  L  E   : E  R  I  S  R  I  G  R  *  R  V  V  S  S  C  K  T  G  D  F  C  C  Y  C  K  S  S  H  N  R  L  D  C  R  A  S  *  N  R  H  L  I  C  S  N  A  N  Q  L  :  V  W  I  A  R  E  E  I  *  R  Y  I  W  A  R  W  R  C  N  F  G  W  F  S  R  T  K  K  T  R  K  S  W  S  A  L  F  L  N  *  R  I  C  E  C  V  S  N  A  S  T  L  T  *  *  T  S  V  K  K  Y  R  C  N  F  W  T  K  *  I  Y  P  F  D  *  R  :  N  P  N  G  R  F  N  R  R  Q  R  R  G  E  F  I  K  N  R  I  Y  *  A  D  G  F  N  G  A  S  S  M  W  S  S  *  A  L  E  L  S  N  M  D  E  G  S  Y  C  S  R  C  *  W  N  R  Q  A  T  S  C  *  P  C  S  T  R  K :   D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  T  D  D  M  E  V  I  K  T  L  H  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  L  M  A  S  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  V  P  L  Y  F  R  V  P  K  H  *  T  N  N  T  *  F  I  Y  L  S  K  M  K  Y  E  E  L  C  G  I  F  P  F  L  R  N  C  F  S  L  L  N  *  *  C  V  S  I  Y  L  Y  L  M  F  L  D  K  I  I  V  I  F  I  F  Y  V  *  C  S  C  V  T  L  L  I  *  R  Q  K  T  F  F  F  I  S   </first_frame>
            <second_frame>  S  N  V  E  I  L  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  F  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  V  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  E  L  L  K  T  D  T  L  F  A  A  M  R  T  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  A  I  L  G  G  L  V  G  L  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  V  S  V  Y  R  M  H  Q  L  L  P  D  K  L  Q  L  R  N  I  D  A  T  S  G  P  N  K  S  I  P  L  T  N  E :   I  P  M  G  D  L  I  G  G  K  G  E  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  C  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  H  H  V  D  L  A  A  L  E   : K  T  E  K  E  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  R  M  I  W  K  L  L  K  H  F  M  K  F  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  K  D  L  P  S  L  R  L  H  F  S  Y  S  F  S  W  H  Q   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  R  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  T  I  L  F  H  S  T  F  V  F  L  N  I  K  L  I  I  P  N  L  F  T  Y  R  K  *  N  M  K  N  C  V  V  Y  F  R  F  Y  V  I  V  S  V  C  *  I  N  D  V  Y  L  S  I  F  I  *  C  F  L  I  R  *  L  *  S  L  Y  F  M  Y  N  V  L  V  L  L  F  L  F  N  V  K  K  L  F  F  L  Y  Q  </second_frame>
            <third_frame>   A  T  *  R  S  *  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  D  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  I  L  G  L  D  L  *  H  C  K  R  S  L  Y  K  S  I  I  L  F  V  M  S  *  R :   K  N  I  Q  N  W  K  M  K  S  C  I  V  M  Q  D  W  *  L  L  L  L  L  Q  K  F  T  Q  *  I  G  L  S  S  F  L  K  Q  T  P  Y  L  Q  Q  C  E  P  I   : G  M  D  C  *  G  R  N  L  K  I  H  L  G  T  L  E  V  Q  F  W  V  V  *  *  D  *  K  N  P  K  I  M  E  C  L  I  P  *  L  K  N  L  *  V  C  I  E  C  I  N  S  Y  L  I  N  F  S  *  E  I  *  M  Q  L  L  D  Q  I  N  L  S  L  *  L  T   : K  S  Q  W  E  I  *  S  E  A  K  E  R  R  I  Y  Q  E  S  D  L  L  S  R  W  F  Q  W  G  I  K  H  V  E  L  L  S  F  G  I  I  Q  Y  G  *  G  I  L  L  L  K  M  L  M  E  Q  T  G  H  I  M  L  T  L  Q  H  S  K  :  R  Q  R  K  K  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  D  G  *  Y  G  S  Y  *  N  T  S  *  S  L  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  R  I  C  H  L  *  D  C  I  F  H  I  P  S  H  G  I  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  G  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  E  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  Q  S  C  S  T  L  L  S  C  S  *  T  L  N  *  *  Y  L  I  Y  L  L  I  E  N  E  I  *  R  I  V  W  Y  I  S  V  F  T  *  L  F  Q  F  V  K  L  M  M  C  I  Y  L  S  L  F  N  V  S  *  *  D  N  C  N  L  Y  I  L  C  I  M  F  L  C  Y  S  S  Y  L  T  S  K  N  F  F  F  Y  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65069" stop="65260"/>
                    <exon start="65326" stop="65471"/>
                    <exon start="65551" stop="65778"/>
                    <exon start="65854" stop="66056"/>
                    <exon start="66134" stop="66216"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNVEILKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNTWAGFVTLQALFVQEHNLVCDVLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLFAAMRTNWYGLLGKKFKDTFGHVGGAILGGLVGLKKPENHGVPYSLTEEFVSVYRMHQLLPDKLQLRNIDATSGPNKSIPLTNEIPMGDLIGGKGEENLSRIGFTKQMVSMGHQACGALELWNYPIWMRDLIAQDVDGTDRPHHVDLAALEKTEKEVLLGTMNFEGECCKFPSLNGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="63951" e_stop="64109"/>
            <exon e_start="64366" e_stop="64510"/>
            <exon e_start="64603" e_stop="64752"/>
            <exon e_start="64820" e_stop="64956"/>
            <exon e_start="65047" e_stop="65260"/>
            <exon e_start="65326" e_stop="65531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.975"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.906" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.944"/>
          <exon-only e_score="0.859"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="63951" e_stop="64109" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64110" i_stop="64365" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64366" e_stop="64510" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64603" e_stop="64752" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64753" i_stop="64819" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="64820" e_stop="64956" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.884" acc_prob="0.906">
            <gDNA_intron_boundary i_start="64957" i_stop="65046" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="65047" e_stop="65260" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65261" i_stop="65325" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="0.859">
            <gDNA_exon_boundary e_start="65326" e_stop="65531" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63951" stop="64109"/>
              <exon start="64366" stop="64510"/>
              <exon start="64603" stop="64739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64693" stop="64752"/>
              <exon start="64820" stop="64956"/>
              <exon start="65047" stop="65260"/>
              <exon start="65326" stop="65531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG : AACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG : GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG : AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATG</gDNA_template>
            <first_frame> I  H  F  N  Y  Y  H  I  Y  I  Y  K  V  G  N  M  T  M  I  M  L  K  N  L  L  F  S  P  L  R  G  F  I  H  K  D  F  H  Q  I  L  D  K  M  N  L  R  D  K  L  S  F  L  :  N  T  E  R  S  P  I  E  S  G  R  L  P  L  *  N  S  R  W  K  I  *  *  S  F  Q  *  R  S  R  K  *  I  F  F  L  W  E  E  Y  D  A  C  *  A  T  *  Q   : V  K  E  S  R  S  N  G  S  G  N  K  A  A  S  T  E  R  I  H  R  H  W  K  T  I  *  H  D  S  C  I  M  D  T  V  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  G  A  *  G  T  *  R  S  C  K  S  M  S  S  Q  V  L  *  V  L  Q  I  K  R  N  S  Y  R  I  L  R  N  *  N  R  S  F  E  *  A  Y  P  L  V  :  G  W  K  C  Y  L  W  E  Q  R  R  D  L  E  E  S  K  D  I  *  R  R  K  I  E  T  I  R  K  W  T  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  Y  L  G  W  I  C  N  T  A  S  A  L  C  T  R  A  *  S  C  L  *  C  L  E   : E  R  I  S  R  I  G  R  *  R  V  V  S  S  C  K  T  G  D  F  C  C  Y  C  K  S  S  H  N  R  L  D  C  R  A  S  *  N  R  H  L  I  C  S  N  A  N  Q  L  V  N  I  I  Y  S  H  T  N  *  L  V  F  L  A  T  *  L  L  M </first_frame>
            <second_frame>  Y  I  L  I  T  I  I  Y  I  Y  I  K  *  E  T  *  L  *  L  C  *  R  I  S  C  S  P  L  F  V  V  S  S  T  K  I  F  I  R  Y  L  T  K  *  I  S  A  T  N  F  H  F  * :   T  P  S  G  V  R  S  N  P  G  D  F  P  Y  R  T  A  D  G  K  Y  N  D  P  F  N  E  G  A  G  S  E  F  S  F  F  G  R  N  M  M  P  V  E  Q  H  D  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  E  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  E  L  R  A  P  E  E  V  A  S  Q  C  P  L  K  S  F  K  F  Y  K  S  K  E  T  P  T  G  F  Y  E  I  K  T  G  H  L  N  R  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  V  E  I  L  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  F  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  V  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  E  L  L  K  T  D  T  L  F  A  A  M  R  T  N  W  L  I  L  F  I  L  I  Q  I  S  *  F  F  *  L  L  N  Y  *   </second_frame>
            <third_frame>   T  F  *  L  L  S  Y  I  Y  I  *  S  R  K  H  D  Y  D  Y  A  E  E  S  L  V  L  P  S  S  W  F  H  P  Q  R  F  S  S  D  T  *  Q  N  E  S  P  R  Q  T  F  I  S   : E  H  R  A  E  S  D  R  I  R  A  T  S  L  I  E  Q  Q  M  E  N  I  M  I  L  S  M  K  E  Q  E  V  N  F  L  S  L  G  G  I  *  C  L  L  S  N  M  T  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  S  C  *  H  G  E  N  S  *  T  L  E  N  N  L  T  *  *  L  H  H  G  Y  S  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  R  S  L  G  H  L  K  K  L  Q  V  N  V  L  S  S  P  L  S  F  T  N  Q  K  K  L  L  P  D  F  T  K  L  K  P  V  I  *  I  G  V  P  L  G   : G  M  E  V  L  F  M  G  A  T  *  R  S  *  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  D  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  I  L  G  L  D  L  *  H  C  K  R  S  L  Y  K  S  I  I  L  F  V  M  S  *  R :   K  N  I  Q  N  W  K  M  K  S  C  I  V  M  Q  D  W  *  L  L  L  L  L  Q  K  F  T  Q  *  I  G  L  S  S  F  L  K  Q  T  P  Y  L  Q  Q  C  E  P  I  G  *  Y  Y  L  F  S  Y  K  L  V  S  F  F  S  Y  L  I  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64367" stop="64510"/>
                    <exon start="64603" stop="64752"/>
                    <exon start="64820" stop="64956"/>
                    <exon start="65047" stop="65260"/>
                    <exon start="65326" stop="65505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSGVRSNPGDFPYRTADGKYNDPFNEGAGSEFSFFGRNMMPVEQHDKLKNPDPMVVATKLLARREFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIEELRAPEEVASQCPLKSFKFYKSKETPTGFYEIKTGHLNRRTPWWDGSVIYGSNVEILKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNTWAGFVTLQALFVQEHNLVCDVLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLFAAMRTNWLILFILIQIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="63951" e_stop="64109"/>
            <exon e_start="64366" e_stop="64510"/>
            <exon e_start="64603" e_stop="64759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63951" e_stop="64109" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64110" i_stop="64365" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64366" e_stop="64510" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64511" i_stop="64602" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64603" e_stop="64759" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63951" stop="64109"/>
              <exon start="64366" stop="64510"/>
              <exon start="64603" stop="64739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63955" stop="64109"/>
              <exon start="64366" stop="64510"/>
              <exon start="64603" stop="64759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG : AACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAAT</gDNA_template>
            <first_frame> I  H  F  N  Y  Y  H  I  Y  I  Y  K  V  G  N  M  T  M  I  M  L  K  N  L  L  F  S  P  L  R  G  F  I  H  K  D  F  H  Q  I  L  D  K  M  N  L  R  D  K  L  S  F  L  :  N  T  E  R  S  P  I  E  S  G  R  L  P  L  *  N  S  R  W  K  I  *  *  S  F  Q  *  R  S  R  K  *  I  F  F  L  W  E  E  Y  D  A  C  *  A  T  *  Q   : V  K  E  S  R  S  N  G  S  G  N  K  A  A  S  T  E  R  I  H  R  H  W  K  T  I  *  H  D  S  C  I  M  D  T  V  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T  G  I   </first_frame>
            <second_frame>  Y  I  L  I  T  I  I  Y  I  Y  I  K  *  E  T  *  L  *  L  C  *  R  I  S  C  S  P  L  F  V  V  S  S  T  K  I  F  I  R  Y  L  T  K  *  I  S  A  T  N  F  H  F  * :   T  P  S  G  V  R  S  N  P  G  D  F  P  Y  R  T  A  D  G  K  Y  N  D  P  F  N  E  G  A  G  S  E  F  S  F  F  G  R  N  M  M  P  V  E  Q  H  D  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  E  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  V  *  </second_frame>
            <third_frame>   T  F  *  L  L  S  Y  I  Y  I  *  S  R  K  H  D  Y  D  Y  A  E  E  S  L  V  L  P  S  S  W  F  H  P  Q  R  F  S  S  D  T  *  Q  N  E  S  P  R  Q  T  F  I  S   : E  H  R  A  E  S  D  R  I  R  A  T  S  L  I  E  Q  Q  M  E  N  I  M  I  L  S  M  K  E  Q  E  V  N  F  L  S  L  G  G  I  *  C  L  L  S  N  M  T  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  S  C  *  H  G  E  N  S  *  T  L  E  N  N  L  T  *  *  L  H  H  G  Y  S  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R  Y  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64367" stop="64510"/>
                    <exon start="64603" stop="64758"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSGVRSNPGDFPYRTADGKYNDPFNEGAGSEFSFFGRNMMPVEQHDKLKNPDPMVVATKLLARREFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="70505" PGL_stop="76490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70777" e_stop="70933"/>
            <exon e_start="71706" e_stop="71951"/>
            <exon e_start="74207" e_stop="74356"/>
            <exon e_start="74457" e_stop="74590"/>
            <exon e_start="74656" e_stop="74869"/>
            <exon e_start="74950" e_stop="75095"/>
            <exon e_start="75187" e_stop="75414"/>
            <exon e_start="75493" e_stop="75695"/>
            <exon e_start="75784" e_stop="76027"/>
            <exon e_start="76131" e_stop="76490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.962" e_score="0.860"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.907"/>
          <exon-intron don_prob="0.970" acc_prob="0.990" e_score="0.980"/>
          <exon-intron don_prob="0.987" acc_prob="0.923" e_score="0.955"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.921"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.959"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.982"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.969" acc_prob="0.995" e_score="0.988"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.860">
            <gDNA_exon_boundary e_start="70777" e_stop="70933" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.962">
            <gDNA_intron_boundary i_start="70934" i_stop="71705" i_length="772"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="71706" e_stop="71951" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71952" i_stop="74206" i_length="2255"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="74207" e_stop="74356" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="74457" e_stop="74590" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.923">
            <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65"/>
          </intron>
          <exon e_serial="5" e_score="0.921">
            <gDNA_exon_boundary e_start="74656" e_stop="74869" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="74950" e_stop="75095" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75096" i_stop="75186" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="75187" e_stop="75414" e_length="228"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75415" i_stop="75492" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="75493" e_stop="75695" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75696" i_stop="75783" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="75784" e_stop="76027" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76028" i_stop="76130" i_length="103"/>
          </intron>
          <exon e_serial="10" e_score="0.911">
            <gDNA_exon_boundary e_start="76131" e_stop="76490" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70777" stop="70933"/>
              <exon start="71706" stop="71951"/>
              <exon start="74207" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74217" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74869"/>
              <exon start="74950" stop="75069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74217" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74869"/>
              <exon start="74950" stop="75009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74557" stop="74590"/>
              <exon start="74656" stop="74869"/>
              <exon start="74950" stop="75095"/>
              <exon start="75187" stop="75414"/>
              <exon start="75493" stop="75578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74557" stop="74590"/>
              <exon start="74656" stop="74798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74695" stop="74869"/>
              <exon start="74950" stop="75095"/>
              <exon start="75187" stop="75414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75499" stop="75695"/>
              <exon start="75784" stop="76027"/>
              <exon start="76131" stop="76490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATG : ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG : GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAG : AAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG : GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA : GATCCTGATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAG : AAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</gDNA_template>
            <first_frame> L  E  P  T  P  Y  I  F  L  A  C  R  K  L  N  *  Q  H  V  F  C  *  S  F  S  I  S  S  S  L  F  H  S  Q  R  F  S  *  C  C  *  *  N  E  S  S  Q  Q  T  F  V  Y   : D  G  S  L  D  *  *  I  E  P  V  A  P  A  T  S  V  L  G  A  T  L  S  R  S  T  A  T  S  S  S  A  I  *  F  D  Q  R  R  *  N  I  Y  Y  R  C  Y  I  K  S  G  R  R  K  I  Q  R  P  L  *  *  R  M  W  Q  *  I  T  F  L  W  *  E  Y  D  A  C  C  S  T  *  K   : V  K  E  S  R  S  N  G  S  G  N  K  I  A  S  T  Q  K  I  H  R  Y  W  K  T  I  Q  H  D  S  C  L  L  D  T  I  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  A  K  G  T  *  R  S  C  K  *  V  S  S  Q  V  L  E  V  F  Q  D  Q  A  N  T  Y  G  F  M  *  Y  Q  D  G  S  L  E  H  T  Y  S  T  V  :  G  W  K  C  Y  L  W  E  Q  I  *  S  F  K  E  S  E  D  I  *  R  R  K  I  E  T  I  R  K  W  A  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  C  L  G  W  T  C  N  S  A  S  A  L  C  T  R  A  *  S  C  L  *  H  L  E   : E  R  I  S  R  I  E  R  *  G  V  V  S  S  C  K  T  C  H  C  C  C  N  C  *  N  S  H  H  R  L  D  S  *  T  S  Q  Y  R  H  P  S  S  R  N  A  R  Q  L  :  V  W  I  V  R  K  E  I  Q  G  Y  I  W  S  C  W  R  F  H  F  K  W  F  C  G  N  E  E  T  *  G  S  W  S  A  L  F  L  N  *  G  I  Y  E  C  L  S  N  A  S  T  P  A  *  Y  T  *  A  K  K  Y  R  C  H  A  W  T  K  Q  I  S  S  F  D  *  *  :  D  P  D  G  R  S  N  W  G  *  R  K  *  E  S  I  K  N  W  V  Y  *  A  N  G  F  N  G  T  S  S  *  W  S  S  *  T  L  E  L  S  D  M  D  E  G  S  Y  C  P  R  R  R  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  R  Q  R  K  E  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  E  *  *  Y  G  S  Y  *  N  T  *  *  S  I  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  G  V  C  Y  L  *  D  C  F  F  H  I  S  N  H  G  I  K  :  K  V  R  G  R  *  I  F  H  E  L  L  Q  *  G  D  I  Y  E  K  R  T  *  M  G  E  Y  N  *  K  L  K  R  C  T  R  S  T  L  S  R  D  D  *  E  M  D  E  L  Q  Q  R  L  F  C  L  E  L  A  S  R  T  T  Q  S  N  S  S  L  L  S  R  S  S  D  I  G  S  K  S  K  *  K  E  V  I  R  V  L  I  S  F  Y  L  Q  M  C  N  K  I  P  C  T  I  L  T  T  C  F  I  Q  *  A  V  L  *  N  Y  F  R </first_frame>
            <second_frame>  *  N  Q  P  H  I  Y  F  *  L  V  E  N  *  T  N  N  M  S  F  V  N  L  F  L  F  P  L  R  C  F  I  H  K  D  F  H  D  V  V  D  R  M  S  L  L  N  K  L  L  F  M  :  M  V  H  L  I  D  K  L  N  L  W  H  R  L  P  V  F  L  G  L  L  Y  L  A  A  R  R  H  L  H  Q  Q  Y  N  L  I  N  V  D  R  T  F  T  I  D  V  T  S  N  R  V  V  E  K  Y  N  D  P  F  N  E  G  C  G  S  E  L  P  F  F  G  R  N  M  M  P  V  V  Q  H  E  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  L  R  A  P  E  E  V  A  S  E  C  P  L  K  S  L  K  F  F  K  T  K  Q  T  P  T  G  L  C  D  I  K  T  G  H  L  N  I  R  T  P  Q  W :   D  G  S  A  I  Y  G  S  R  S  E  V  S  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  A  W  A  G  L  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  T  L  K  :  K  E  Y  P  E  L  K  D  E  E  L  Y  R  H  A  K  R  V  T  A  A  V  I  A  K  I  H  T  I  D  W  T  V  E  L  L  N  T  D  T  L  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  S  I  L  S  G  F  V  G  M  K  K  P  E  D  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  E  L  R  N  I  D  A  T  P  G  L  N  K  S  L  P  L  T  N  E :   I  L  M  E  D  L  I  G  G  K  G  N  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  S  D  D  M  E  V  I  K  T  L  N  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  I  M  A  S  R :   R  L  E  A  D  K  F  F  T  S  Y  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  E  K  W  M  N  S  N  S  A  F  S  V  W  N  S  P  P  E  P  H  N  P  I  P  V  Y  F  R  V  P  R  T  *  A  Q  N  Q  N  K  K  K  *  Y  V  C  *  L  V  F  T  C  K  C  V  I  R  F  H  V  L  S  S  L  P  V  S  F  S  E  P  F  Y  E  T  I  S   </second_frame>
            <third_frame>   R  T  N  P  I  Y  I  S  S  L  *  K  I  K  L  T  T  C  L  L  L  I  F  F  Y  F  L  F  V  V  S  F  T  K  I  F  M  M  L  L  I  E  *  V  F  S  T  N  F  C  L  * :   W  F  T  *  L  I  N  *  T  C  G  T  G  Y  Q  C  S  W  G  Y  F  I  S  Q  H  G  D  I  F  I  S  N  I  I  *  S  T  S  I  E  H  L  L  S  M  L  H  Q  I  G  S  S  K  N  T  T  T  P  L  M  K  D  V  A  V  N  Y  L  S  L  V  G  I  *  C  L  L  F  N  M  K  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  N  C  *  H  A  E  N  S  S  I  L  E  N  N  S  T  *  *  L  P  L  G  Y  N  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  L  K  K  L  Q  V  S  V  L  S  S  P  *  S  F  S  R  P  S  K  H  L  R  V  Y  V  I  S  R  R  V  T  *  T  Y  V  L  H  S   : G  M  E  V  L  F  M  G  A  D  L  K  F  Q  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  G  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  M  L  G  L  D  L  *  L  C  K  R  S  L  Y  K  S  I  I  L  F  V  T  P  *  R :   K  N  I  Q  N  *  K  M  R  S  C  I  V  M  Q  N  V  S  L  L  L  *  L  L  K  F  T  P  *  I  G  Q  L  N  F  S  I  Q  T  P  F  *  Q  E  C  A  P  I   : G  M  D  C  *  E  R  N  S  R  I  H  L  V  M  L  E  V  P  F  *  V  V  L  W  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  R  N  L  R  V  S  I  E  C  I  N  S  C  L  I  H  L  S  *  E  I  S  M  P  R  L  D  *  T  N  L  F  L  *  L  M   : R  S  *  W  K  I  *  L  G  V  K  E  M  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  D  I  K  L  V  E  L  L  N  F  G  I  I  R  Y  G  *  G  I  L  L  P  K  T  S  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  E  T  E  K  G  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  V  M  I  W  K  L  L  K  H  L  M  K  Y  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  R  G  L  L  S  L  R  L  L  F  S  Y  F  *  S  W  H  Q   : E  G  *  R  Q  I  N  F  S  R  A  I  T  M  R  R  H  I  R  K  K  D  L  N  G  *  I  Q  L  K  A  *  K  M  Y  *  I  D  I  I  Q  R  *  L  R  N  G  *  T  P  T  A  P  F  L  F  G  T  R  L  Q  N  H  T  I  Q  F  Q  S  T  F  A  F  L  G  H  R  L  K  I  K  I  K  R  S  N  T  C  V  D  *  F  L  P  A  N  V  *  *  D  S  M  Y  Y  P  H  Y  L  F  H  S  V  S  R  F  M  K  L  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70820" stop="70933"/>
                    <exon start="71706" stop="71951"/>
                    <exon start="74207" stop="74356"/>
                    <exon start="74457" stop="74590"/>
                    <exon start="74656" stop="74869"/>
                    <exon start="74950" stop="75095"/>
                    <exon start="75187" stop="75414"/>
                    <exon start="75493" stop="75695"/>
                    <exon start="75784" stop="76027"/>
                    <exon start="76131" stop="76359"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1905</number_coding_nucleotides>
                  <number_encoded_amino_acids>635</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNMSFVNLFLFPLRCFIHKDFHDVVDRMSLLNKLLFMMVHLIDKLNLWHRLPVFLGLLYLAARRHLHQQYNLINVDRTFTIDVTSNRVVEKYNDPFNEGCGSELPFFGRNMMPVVQHEKLKNPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELRAPEEVASECPLKSLKFFKTKQTPTGLCDIKTGHLNIRTPQWDGSAIYGSRSEVSKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNAWAGLVTLQALFVQEHNLVCDTLKKEYPELKDEELYRHAKRVTAAVIAKIHTIDWTVELLNTDTLLAGMRANWYGLLGKKFKDTFGHVGGSILSGFVGMKKPEDHGVPYSLTEEFTSVYRMHQLLPDTLELRNIDATPGLNKSLPLTNEILMEDLIGGKGNENLSRIGFTKQMVSMGHQASGALELWNYPIWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLSDDMEVIKTLNEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLIMASRRLEADKFFTSYYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTEKWMNSNSAFSVWNSPPEPHNPIPVYFRVPRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70505" e_stop="70555"/>
            <exon e_start="71706" e_stop="71951"/>
            <exon e_start="74207" e_stop="74356"/>
            <exon e_start="74457" e_stop="74590"/>
            <exon e_start="74656" e_stop="74869"/>
            <exon e_start="74950" e_stop="75095"/>
            <exon e_start="75187" e_stop="75414"/>
            <exon e_start="75493" e_stop="75695"/>
            <exon e_start="75784" e_stop="76027"/>
            <exon e_start="76131" e_stop="76490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.209" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.995"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.959"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.982"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.969" acc_prob="0.995" e_score="0.988"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70505" e_stop="70555" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.209" acc_prob="0.962">
            <gDNA_intron_boundary i_start="70556" i_stop="71705" i_length="1150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71706" e_stop="71951" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71952" i_stop="74206" i_length="2255"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74207" e_stop="74356" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74357" i_stop="74456" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74457" e_stop="74590" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.923">
            <gDNA_intron_boundary i_start="74591" i_stop="74655" i_length="65"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="74656" e_stop="74869" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74870" i_stop="74949" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="74950" e_stop="75095" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75096" i_stop="75186" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="75187" e_stop="75414" e_length="228"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75415" i_stop="75492" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="75493" e_stop="75695" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75696" i_stop="75783" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="75784" e_stop="76027" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76028" i_stop="76130" i_length="103"/>
          </intron>
          <exon e_serial="10" e_score="0.911">
            <gDNA_exon_boundary e_start="76131" e_stop="76490" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70505" stop="70555"/>
              <exon start="71706" stop="71951"/>
              <exon start="74207" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74217" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74869"/>
              <exon start="74950" stop="75069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74217" stop="74356"/>
              <exon start="74457" stop="74590"/>
              <exon start="74656" stop="74869"/>
              <exon start="74950" stop="75009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74557" stop="74590"/>
              <exon start="74656" stop="74869"/>
              <exon start="74950" stop="75095"/>
              <exon start="75187" stop="75414"/>
              <exon start="75493" stop="75578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74557" stop="74590"/>
              <exon start="74656" stop="74798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74695" stop="74869"/>
              <exon start="74950" stop="75095"/>
              <exon start="75187" stop="75414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75499" stop="75695"/>
              <exon start="75784" stop="76027"/>
              <exon start="76131" stop="76490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTT : ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG : GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAG : AAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG : GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA : GATCCTGATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAG : AAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</gDNA_template>
            <first_frame> L  I  I  M  F  G  Q  S  S  S  F  *  A  N  F  W  V  :  M  V  H  L  I  D  K  L  N  L  W  H  R  L  P  V  F  L  G  L  L  Y  L  A  A  R  R  H  L  H  Q  Q  Y  N  L  I  N  V  D  R  T  F  T  I  D  V  T  S  N  R  V  V  E  K  Y  N  D  P  F  N  E  G  C  G  S  E  L  P  F  F  G  R  N  M  M  P  V  V  Q  H  E  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  L  R  A  P  E  E  V  A  S  E  C  P  L  K  S  L  K  F  F  K  T  K  Q  T  P  T  G  L  C  D  I  K  T  G  H  L  N  I  R  T  P  Q  W :   D  G  S  A  I  Y  G  S  R  S  E  V  S  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  A  W  A  G  L  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  T  L  K  :  K  E  Y  P  E  L  K  D  E  E  L  Y  R  H  A  K  R  V  T  A  A  V  I  A  K  I  H  T  I  D  W  T  V  E  L  L  N  T  D  T  L  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  S  I  L  S  G  F  V  G  M  K  K  P  E  D  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  E  L  R  N  I  D  A  T  P  G  L  N  K  S  L  P  L  T  N  E :   I  L  M  E  D  L  I  G  G  K  G  N  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  S  D  D  M  E  V  I  K  T  L  N  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  I  M  A  S  R :   R  L  E  A  D  K  F  F  T  S  Y  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  E  K  W  M  N  S  N  S  A  F  S  V  W  N  S  P  P  E  P  H  N  P  I  P  V  Y  F  R  V  P  R  T  *  A  Q  N  Q  N  K  K  K  *  Y  V  C  *  L  V  F  T  C  K  C  V  I  R  F  H  V  L  S  S  L  P  V  S  F  S  E  P  F  Y  E  T  I  S   </first_frame>
            <second_frame>  S  L  *  C  L  G  N  P  P  P  F  E  L  T  F  G  L :   W  F  T  *  L  I  N  *  T  C  G  T  G  Y  Q  C  S  W  G  Y  F  I  S  Q  H  G  D  I  F  I  S  N  I  I  *  S  T  S  I  E  H  L  L  S  M  L  H  Q  I  G  S  S  K  N  T  T  T  P  L  M  K  D  V  A  V  N  Y  L  S  L  V  G  I  *  C  L  L  F  N  M  K  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  N  C  *  H  A  E  N  S  S  I  L  E  N  N  S  T  *  *  L  P  L  G  Y  N  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  L  K  K  L  Q  V  S  V  L  S  S  P  *  S  F  S  R  P  S  K  H  L  R  V  Y  V  I  S  R  R  V  T  *  T  Y  V  L  H  S   : G  M  E  V  L  F  M  G  A  D  L  K  F  Q  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  G  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  M  L  G  L  D  L  *  L  C  K  R  S  L  Y  K  S  I  I  L  F  V  T  P  *  R :   K  N  I  Q  N  *  K  M  R  S  C  I  V  M  Q  N  V  S  L  L  L  *  L  L  K  F  T  P  *  I  G  Q  L  N  F  S  I  Q  T  P  F  *  Q  E  C  A  P  I   : G  M  D  C  *  E  R  N  S  R  I  H  L  V  M  L  E  V  P  F  *  V  V  L  W  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  R  N  L  R  V  S  I  E  C  I  N  S  C  L  I  H  L  S  *  E  I  S  M  P  R  L  D  *  T  N  L  F  L  *  L  M   : R  S  *  W  K  I  *  L  G  V  K  E  M  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  D  I  K  L  V  E  L  L  N  F  G  I  I  R  Y  G  *  G  I  L  L  P  K  T  S  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  E  T  E  K  G  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  V  M  I  W  K  L  L  K  H  L  M  K  Y  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  R  G  L  L  S  L  R  L  L  F  S  Y  F  *  S  W  H  Q   : E  G  *  R  Q  I  N  F  S  R  A  I  T  M  R  R  H  I  R  K  K  D  L  N  G  *  I  Q  L  K  A  *  K  M  Y  *  I  D  I  I  Q  R  *  L  R  N  G  *  T  P  T  A  P  F  L  F  G  T  R  L  Q  N  H  T  I  Q  F  Q  S  T  F  A  F  L  G  H  R  L  K  I  K  I  K  R  S  N  T  C  V  D  *  F  L  P  A  N  V  *  *  D  S  M  Y  Y  P  H  Y  L  F  H  S  V  S  R  F  M  K  L  F  Q  </second_frame>
            <third_frame>   H  Y  N  V  W  A  I  L  L  L  L  S  *  L  L  G   : Y  G  S  L  D  *  *  I  E  P  V  A  P  A  T  S  V  L  G  A  T  L  S  R  S  T  A  T  S  S  S  A  I  *  F  D  Q  R  R  *  N  I  Y  Y  R  C  Y  I  K  S  G  R  R  K  I  Q  R  P  L  *  *  R  M  W  Q  *  I  T  F  L  W  *  E  Y  D  A  C  C  S  T  *  K   : V  K  E  S  R  S  N  G  S  G  N  K  I  A  S  T  Q  K  I  H  R  Y  W  K  T  I  Q  H  D  S  C  L  L  D  T  I  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  A  K  G  T  *  R  S  C  K  *  V  S  S  Q  V  L  E  V  F  Q  D  Q  A  N  T  Y  G  F  M  *  Y  Q  D  G  S  L  E  H  T  Y  S  T  V  :  G  W  K  C  Y  L  W  E  Q  I  *  S  F  K  E  S  E  D  I  *  R  R  K  I  E  T  I  R  K  W  A  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  C  L  G  W  T  C  N  S  A  S  A  L  C  T  R  A  *  S  C  L  *  H  L  E   : E  R  I  S  R  I  E  R  *  G  V  V  S  S  C  K  T  C  H  C  C  C  N  C  *  N  S  H  H  R  L  D  S  *  T  S  Q  Y  R  H  P  S  S  R  N  A  R  Q  L  :  V  W  I  V  R  K  E  I  Q  G  Y  I  W  S  C  W  R  F  H  F  K  W  F  C  G  N  E  E  T  *  G  S  W  S  A  L  F  L  N  *  G  I  Y  E  C  L  S  N  A  S  T  P  A  *  Y  T  *  A  K  K  Y  R  C  H  A  W  T  K  Q  I  S  S  F  D  *  *  :  D  P  D  G  R  S  N  W  G  *  R  K  *  E  S  I  K  N  W  V  Y  *  A  N  G  F  N  G  T  S  S  *  W  S  S  *  T  L  E  L  S  D  M  D  E  G  S  Y  C  P  R  R  R  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  R  Q  R  K  E  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  E  *  *  Y  G  S  Y  *  N  T  *  *  S  I  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  G  V  C  Y  L  *  D  C  F  F  H  I  S  N  H  G  I  K  :  K  V  R  G  R  *  I  F  H  E  L  L  Q  *  G  D  I  Y  E  K  R  T  *  M  G  E  Y  N  *  K  L  K  R  C  T  R  S  T  L  S  R  D  D  *  E  M  D  E  L  Q  Q  R  L  F  C  L  E  L  A  S  R  T  T  Q  S  N  S  S  L  L  S  R  S  S  D  I  G  S  K  S  K  *  K  E  V  I  R  V  L  I  S  F  Y  L  Q  M  C  N  K  I  P  C  T  I  L  T  T  C  F  I  Q  *  A  V  L  *  N  Y  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70541" stop="70555"/>
                    <exon start="71706" stop="71951"/>
                    <exon start="74207" stop="74356"/>
                    <exon start="74457" stop="74590"/>
                    <exon start="74656" stop="74869"/>
                    <exon start="74950" stop="75095"/>
                    <exon start="75187" stop="75414"/>
                    <exon start="75493" stop="75695"/>
                    <exon start="75784" stop="76027"/>
                    <exon start="76131" stop="76359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1806</number_coding_nucleotides>
                  <number_encoded_amino_acids>602</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANFWVMVHLIDKLNLWHRLPVFLGLLYLAARRHLHQQYNLINVDRTFTIDVTSNRVVEKYNDPFNEGCGSELPFFGRNMMPVVQHEKLKNPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELRAPEEVASECPLKSLKFFKTKQTPTGLCDIKTGHLNIRTPQWDGSAIYGSRSEVSKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNAWAGLVTLQALFVQEHNLVCDTLKKEYPELKDEELYRHAKRVTAAVIAKIHTIDWTVELLNTDTLLAGMRANWYGLLGKKFKDTFGHVGGSILSGFVGMKKPEDHGVPYSLTEEFTSVYRMHQLLPDTLELRNIDATPGLNKSLPLTNEILMEDLIGGKGNENLSRIGFTKQMVSMGHQASGALELWNYPIWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLSDDMEVIKTLNEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLIMASRRLEADKFFTSYYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTEKWMNSNSAFSVWNSPPEPHNPIPVYFRVPRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="76709" PGL_stop="77051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76709" e_stop="77051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="76709" e_stop="77051" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76709" stop="77051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCAGAAGAAAATTTTGAATTGAATAAAATGAGGATGTTATTCTTTCACTAAAATCAATGAAAATTGGGGAATTTTCTTCTAAGAATTTCCTGTAAAAATTCATTCCATGTATCAATCGGCCCTGGCAAACACCAATGTATACAATCACTGTAGCCCTTCATCCATTTATTGCCCCAATAGGCTCCTGGATGTCCATCTGGTCTCATTAACATGGCTCTTGTCACGTCCATAAGTTCAAACATGTTACCAAATTTTTCTCCATCTTTTCTTGCTCTTTCAATTTCTTCTATTTGAATGTTCCGAAATTCCCAATCTTGATCACCAATTTTAACTTCATCTCT</gDNA_template>
            <first_frame> T  Q  K  K  I  L  N  *  I  K  *  G  C  Y  S  F  T  K  I  N  E  N  W  G  I  F  F  *  E  F  P  V  K  I  H  S  M  Y  Q  S  A  L  A  N  T  N  V  Y  N  H  C  S  P  S  S  I  Y  C  P  N  R  L  L  D  V  H  L  V  S  L  T  W  L  L  S  R  P  *  V  Q  T  C  Y  Q  I  F  L  H  L  F  L  L  F  Q  F  L  L  F  E  C  S  E  I  P  N  L  D  H  Q  F  *  L  H  L  </first_frame>
            <second_frame>  L  R  R  K  F  *  I  E  *  N  E  D  V  I  L  S  L  K  S  M  K  I  G  E  F  S  S  K  N  F  L  *  K  F  I  P  C  I  N  R  P  W  Q  T  P  M  Y  T  I  T  V  A  L  H  P  F  I  A  P  I  G  S  W  M  S  I  W  S  H  *  H  G  S  C  H  V  H  K  F  K  H  V  T  K  F  F  S  I  F  S  C  S  F  N  F  F  Y  L  N  V  P  K  F  P  I  L  I  T  N  F  N  F  I  S </second_frame>
            <third_frame>   S  E  E  N  F  E  L  N  K  M  R  M  L  F  F  H  *  N  Q  *  K  L  G  N  F  L  L  R  I  S  C  K  N  S  F  H  V  S  I  G  P  G  K  H  Q  C  I  Q  S  L  *  P  F  I  H  L  L  P  Q  *  A  P  G  C  P  S  G  L  I  N  M  A  L  V  T  S  I  S  S  N  M  L  P  N  F  S  P  S  F  L  A  L  S  I  S  S  I  *  M  F  R  N  S  Q  S  *  S  P  I  L  T  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0065M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="77129" PGL_stop="76713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77129" e_stop="76713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="77129" e_stop="76713" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77129" stop="76713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77124" stop="76713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGACATTCTCCGCCGGTCAATTCGAGCAAGGAGCATGGAATGAAGGAGGATTTTGCAACAGAACAAGACCGTTTACTAGAGATGAAGTTAAAATTGGTGATCAAGATTGGGAATTTCGGAACATTCAAATAGAAGAAATTGAAAGAGCAAGAAAAGATGGAGAAAAATTTGGTAACATGTTTGAACTTATGGACGTGACAAGAGCCATGTTAATGAGACCAGATGGACATCCAGGAGCCTATTGGGGCAATAAATGGATGAAGGGCTACAGTGATTGTATACATTGGTGTTTGCCAGGGCCGATTGATACATGGAATGAATTTTTACAGGAAATTCTTAGAAGAAAATTCCCCAATTTTCATTGATTTTAGTGAAAGAATAACATCCTCATTTTATTCAATTCAAAATTTTCTTCT</gDNA_template>
            <first_frame> R  T  F  S  A  G  Q  F  E  Q  G  A  W  N  E  G  G  F  C  N  R  T  R  P  F  T  R  D  E  V  K  I  G  D  Q  D  W  E  F  R  N  I  Q  I  E  E  I  E  R  A  R  K  D  G  E  K  F  G  N  M  F  E  L  M  D  V  T  R  A  M  L  M  R  P  D  G  H  P  G  A  Y  W  G  N  K  W  M  K  G  Y  S  D  C  I  H  W  C  L  P  G  P  I  D  T  W  N  E  F  L  Q  E  I  L  R  R  K  F  P  N  F  H  *  F  *  *  K  N  N  I  L  I  L  F  N  S  K  F  S  S </first_frame>
            <second_frame>  G  H  S  P  P  V  N  S  S  K  E  H  G  M  K  E  D  F  A  T  E  Q  D  R  L  L  E  M  K  L  K  L  V  I  K  I  G  N  F  G  T  F  K  *  K  K  L  K  E  Q  E  K  M  E  K  N  L  V  T  C  L  N  L  W  T  *  Q  E  P  C  *  *  D  Q  M  D  I  Q  E  P  I  G  A  I  N  G  *  R  A  T  V  I  V  Y  I  G  V  C  Q  G  R  L  I  H  G  M  N  F  Y  R  K  F  L  E  E  N  S  P  I  F  I  D  F  S  E  R  I  T  S  S  F  Y  S  I  Q  N  F  L   </second_frame>
            <third_frame>   D  I  L  R  R  S  I  R  A  R  S  M  E  *  R  R  I  L  Q  Q  N  K  T  V  Y  *  R  *  S  *  N  W  *  S  R  L  G  I  S  E  H  S  N  R  R  N  *  K  S  K  K  R  W  R  K  I  W  *  H  V  *  T  Y  G  R  D  K  S  H  V  N  E  T  R  W  T  S  R  S  L  L  G  Q  *  M  D  E  G  L  Q  *  L  Y  T  L  V  F  A  R  A  D  *  Y  M  E  *  I  F  T  G  N  S  *  K  K  I  P  Q  F  S  L  I  L  V  K  E  *  H  P  H  F  I  Q  F  K  I  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77129" stop="76764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTFSAGQFEQGAWNEGGFCNRTRPFTRDEVKIGDQDWEFRNIQIEEIERARKDGEKFGNMFELMDVTRAMLMRPDGHPGAYWGNKWMKGYSDCIHWCLPGPIDTWNEFLQEILRRKFPNFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="79201" PGL_stop="78609"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79201" e_stop="78885"/>
            <exon e_start="78795" e_stop="78609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.693" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79201" e_stop="78885" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.693">
            <gDNA_intron_boundary i_start="78884" i_stop="78796" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78795" e_stop="78609" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79201" stop="78885"/>
              <exon start="78795" stop="78609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG : TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</gDNA_template>
            <first_frame> *  P  S  P  T  L  E  K  L  T  H  S  S  L  K  V  E  Q  A  P  H  F  S  L  F  L  S  S  P  C  C  *  C  I  S  N  E  D  E  F  S  Q  L  *  S  I  *  R  G  *  V  S  *  P  R  F  L  I  D  L  F  T  L  S  N  R  D  F  Q  L  L  H  A  S  F  F  L  Q  P  K  R  *  L  H  N  Q  T  R  F  S  S  S  Y  *  I  L  T  R  Y  K  S  L  S  T  C  S :   S  Q  Q  H  Y  I  R  L  *  L  V  E  W  *  L  G  F  R  G  E  G  *  L  F  S  V  L  Y  K  L  *  L  S  N  N  S  A  F  K  K  L  F  V  E  R  K  G  R  *  R  I  Y  A  V  E  M  E  T  R  R  M  Y </first_frame>
            <second_frame>  N  H  H  L  L  *  K  N  *  P  I  L  H  L  K  *  N  K  H  H  I  S  L  C  F  S  L  L  L  V  V  N  V  Y  Q  M  K  M  N  F  H  N  Y  N  L  F  K  E  D  K  F  R  S  P  G  F  L  L  I  Y  S  L  F  L  T  V  I  F  S  C  Y  M  L  H  F  S  F  S  P  N  V  N  F  I  T  K  Q  D  S  A  P  P  T  K  S  S  H  V  T  N  H  S  Q  P  A   : V  H  N  N  I  T  S  D  C  D  L  L  N  G  N  W  V  L  E  E  K  G  N  Y  S  L  Y  Y  T  N  F  S  C  P  T  I  P  H  S  K  N  C  L  L  N  G  R  A  D  E  G  F  M  Q  W  R  W  K  P  E  E  C   </second_frame>
            <third_frame>   T  I  T  Y  S  R  K  I  N  P  F  F  T  *  S  R  T  S  T  T  F  L  S  V  S  L  F  S  L  L  L  M  Y  I  K  *  R  *  I  F  T  I  I  I  Y  L  K  R  I  S  F  V  A  Q  V  S  Y  *  S  I  H  S  F  *  P  *  F  S  A  A  T  C  F  I  F  P  S  A  Q  T  L  T  S  *  P  N  K  I  Q  L  L  L  L  N  P  H  T  L  Q  I  T  L  N  L  Q  :  F  T  T  T  L  H  P  I  V  T  C  *  M  V  I  G  F  *  R  R  R  V  I  I  L  C  I  I  Q  T  L  A  V  Q  Q  F  R  I  Q  K  T  V  C  *  T  E  G  Q  M  K  D  L  C  S  G  D  G  N  Q  K  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79152" stop="78885"/>
                    <exon start="78795" stop="78611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKHHISLCFSLLLVVNVYQMKMNFHNYNLFKEDKFRSPGFLLIYSLFLTVIFSCYMLHFSFSPNVNFITKQDSAPPTKSSHVTNHSQPAVHNNITSDCDLLNGNWVLEEKGNYSLYYTNFSCPTIPHSKNCLLNGRADEGFMQWRWKPEEC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="81049" PGL_stop="87720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81065" e_stop="81140"/>
            <exon e_start="81377" e_stop="81527"/>
            <exon e_start="81821" e_stop="81979"/>
            <exon e_start="83765" e_stop="83824"/>
            <exon e_start="84174" e_stop="84272"/>
            <exon e_start="85108" e_stop="85215"/>
            <exon e_start="85296" e_stop="85439"/>
            <exon e_start="86819" e_stop="86926"/>
            <exon e_start="87344" e_stop="87395"/>
            <exon e_start="87465" e_stop="87720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.518" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81065" e_stop="81140" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81377" e_stop="81527" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81821" e_stop="81979" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83765" e_stop="83824" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84174" e_stop="84272" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85108" e_stop="85215" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85296" e_stop="85439" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.518">
            <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86819" e_stop="86926" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.842" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86927" i_stop="87343" i_length="417"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="87344" e_stop="87395" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.273" acc_prob="0.969">
            <gDNA_intron_boundary i_start="87396" i_stop="87464" i_length="69"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="87465" e_stop="87720" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81065" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85215"/>
              <exon start="85296" stop="85439"/>
              <exon start="86819" stop="86923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81065" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81066" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81071" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81072" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85215"/>
              <exon start="85296" stop="85347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81074" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81128" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81130" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85215"/>
              <exon start="85296" stop="85359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81130" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81419" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85215"/>
              <exon start="85296" stop="85311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85297" stop="85439"/>
              <exon start="86819" stop="86926"/>
              <exon start="87344" stop="87395"/>
              <exon start="87465" stop="87720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG : TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA : GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA : ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</gDNA_template>
            <first_frame> Q  R  Q  N  S  I  K  T  P  F  L  H  L  P  T  N  Y  T  L  H  S  P  L  P  L   : V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   L  P  T  C  S  V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R :   L  K  E  S  G  N  A  R  I  R  T  W  L  S  Y  P  R  L  L  K  S  L  K  I  S  L  C  L  S  R  S  T  T  W  T  E :   N  P  T  L  K  P  M  P  R  Q  I  *  P  C  I  S  R  :  M  A  K  F  K  W  N  V  T  *  *  L  N  *  V  T  N  Y  Y  L  N  L  L  G  F  R  K  *  *  M  T  A  K  T  D  Q  F  G  Y  S  V  V  *  N  Y  T  C  N  M  *  I  Y  D  L  N  Y  V  H  V  T  *  L  C  I  W  I  E  S  S  F  C  C  N  L  I  C  N  E  N  W  L  G  Q  V  H  </first_frame>
            <second_frame>  K  D  K  T  P  L  K  L  P  F  F  T  F  Q  P  T  T  P  F  T  L  L  F  R  S  :  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : F  S  L  H  A  V  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A   : D  S  R  N  L  E  M  Q  E  S  E  H  G  *  A  I  Q  D  C  *  R  A  *  R  S  V  Y  V  F  P  D  Q  P  H  G  Q   : R  I  Q  H  *  S  R  C  P  G  K  F  S  R  V  S  Q  E :   W  R  N  S  S  G  M  *  H  D  N  L  I  K  S  P  T  T  T  S  T  C  W  D  L  G  N  D  E  *  P  P  R  Q  T  N  L  D  I  Q  L  S  E  T  T  L  V  T  C  R  Y  M  I  *  I  M  C  M  *  P  N  Y  V  S  G  L  K  V  A  S  A  V  T  *  F  A  M  K  I  G  W  D  K  Y  T </second_frame>
            <third_frame>   K  T  K  L  H  *  N  S  L  S  S  P  S  N  Q  L  H  P  S  L  S  S  S  A  R :   A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  S  P  Y  M  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  Q  F  M  S  F  Q  I  N  H  M  D  R  :  E  S  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : N  G  E  I  Q  V  E  C  D  M  I  T  *  L  S  H  Q  L  L  P  Q  L  V  G  I  *  E  M  M  N  D  R  Q  D  R  P  I  W  I  F  S  C  L  K  L  H  L  *  H  V  D  I  *  S  E  L  C  A  C  N  L  I  M  Y  L  D  *  K  *  L  L  L  *  P  N  L  Q  *  K  L  V  G  T  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81085" stop="81140"/>
                    <exon start="81377" stop="81527"/>
                    <exon start="81821" stop="81979"/>
                    <exon start="83765" stop="83824"/>
                    <exon start="84174" stop="84272"/>
                    <exon start="85108" stop="85215"/>
                    <exon start="85296" stop="85439"/>
                    <exon start="86819" stop="86926"/>
                    <exon start="87344" stop="87395"/>
                    <exon start="87465" stop="87502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSSPSNQLHPSLSSSARAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81049" e_stop="81140"/>
            <exon e_start="81377" e_stop="81527"/>
            <exon e_start="81821" e_stop="81979"/>
            <exon e_start="83765" e_stop="83824"/>
            <exon e_start="84174" e_stop="84272"/>
            <exon e_start="85123" e_stop="85215"/>
            <exon e_start="85296" e_stop="85439"/>
            <exon e_start="86819" e_stop="86926"/>
            <exon e_start="87344" e_stop="87395"/>
            <exon e_start="87465" e_stop="87720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.677" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.997" acc_prob="0.518" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81049" e_stop="81140" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81141" i_stop="81376" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81377" e_stop="81527" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81821" e_stop="81979" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83765" e_stop="83824" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84174" e_stop="84272" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.677">
            <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="85123" e_stop="85215" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85296" e_stop="85439" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.518">
            <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86819" e_stop="86926" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.842" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86927" i_stop="87343" i_length="417"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="87344" e_stop="87395" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.273" acc_prob="0.969">
            <gDNA_intron_boundary i_start="87396" i_stop="87464" i_length="69"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="87465" e_stop="87720" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81049" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85123" stop="85154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81066" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81072" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85123" stop="85194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81074" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81087" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85123" stop="85215"/>
              <exon start="85296" stop="85430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81087" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85123" stop="85215"/>
              <exon start="85296" stop="85307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81128" stop="81140"/>
              <exon start="81377" stop="81527"/>
              <exon start="81821" stop="81939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85297" stop="85439"/>
              <exon start="86819" stop="86926"/>
              <exon start="87344" stop="87395"/>
              <exon start="87465" stop="87720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG : TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA : GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA : ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</gDNA_template>
            <first_frame> R  D  Q  L  L  T  K  T  K  L  H  *  N  S  L  S  S  P  S  N  Q  L  H  P  S  L  S  S  S  A  R :   A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  Q  F  M  S  F  Q  I  N  H  M  D  R  :  E  S  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : N  G  E  I  Q  V  E  C  D  M  I  T  *  L  S  H  Q  L  L  P  Q  L  V  G  I  *  E  M  M  N  D  R  Q  D  R  P  I  W  I  F  S  C  L  K  L  H  L  *  H  V  D  I  *  S  E  L  C  A  C  N  L  I  M  Y  L  D  *  K  *  L  L  L  *  P  N  L  Q  *  K  L  V  G  T  S  T   </first_frame>
            <second_frame>  E  I  S  Y  *  Q  R  Q  N  S  I  K  T  P  F  L  H  L  P  T  N  Y  T  L  H  S  P  L  P  L   : V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R :   L  K  E  S  G  N  A  R  I  R  T  W  L  S  Y  P  R  L  L  K  S  L  K  I  S  L  C  L  S  R  S  T  T  W  T  E :   N  P  T  L  K  P  M  P  R  Q  I  *  P  C  I  S  R  :  M  A  K  F  K  W  N  V  T  *  *  L  N  *  V  T  N  Y  Y  L  N  L  L  G  F  R  K  *  *  M  T  A  K  T  D  Q  F  G  Y  S  V  V  *  N  Y  T  C  N  M  *  I  Y  D  L  N  Y  V  H  V  T  *  L  C  I  W  I  E  S  S  F  C  C  N  L  I  C  N  E  N  W  L  G  Q  V  H  </second_frame>
            <third_frame>   R  S  A  T  D  K  D  K  T  P  L  K  L  P  F  F  T  F  Q  P  T  T  P  F  T  L  L  F  R  S  :  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : L  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A   : D  S  R  N  L  E  M  Q  E  S  E  H  G  *  A  I  Q  D  C  *  R  A  *  R  S  V  Y  V  F  P  D  Q  P  H  G  Q   : R  I  Q  H  *  S  R  C  P  G  K  F  S  R  V  S  Q  E :   W  R  N  S  S  G  M  *  H  D  N  L  I  K  S  P  T  T  T  S  T  C  W  D  L  G  N  D  E  *  P  P  R  Q  T  N  L  D  I  Q  L  S  E  T  T  L  V  T  C  R  Y  M  I  *  I  M  C  M  *  P  N  Y  V  S  G  L  K  V  A  S  A  V  T  *  F  A  M  K  I  G  W  D  K  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81085" stop="81140"/>
                    <exon start="81377" stop="81527"/>
                    <exon start="81821" stop="81979"/>
                    <exon start="83765" stop="83824"/>
                    <exon start="84174" stop="84272"/>
                    <exon start="85123" stop="85215"/>
                    <exon start="85296" stop="85439"/>
                    <exon start="86819" stop="86926"/>
                    <exon start="87344" stop="87395"/>
                    <exon start="87465" stop="87502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSSPSNQLHPSLSSSARAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81232" e_stop="81527"/>
            <exon e_start="81821" e_stop="81979"/>
            <exon e_start="83765" e_stop="83824"/>
            <exon e_start="84174" e_stop="84272"/>
            <exon e_start="85108" e_stop="85215"/>
            <exon e_start="85296" e_stop="85439"/>
            <exon e_start="86819" e_stop="86926"/>
            <exon e_start="87344" e_stop="87395"/>
            <exon e_start="87465" e_stop="87720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.518" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81232" e_stop="81527" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81821" e_stop="81979" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83765" e_stop="83824" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84174" e_stop="84272" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84273" i_stop="85107" i_length="835"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85108" e_stop="85215" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85216" i_stop="85295" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85296" e_stop="85439" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.518">
            <gDNA_intron_boundary i_start="85440" i_stop="86818" i_length="1379"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86819" e_stop="86926" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.842" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86927" i_stop="87343" i_length="417"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="87344" e_stop="87395" e_length="52"/>
          </exon>
          <intron i_serial="8" don_prob="0.273" acc_prob="0.969">
            <gDNA_intron_boundary i_start="87396" i_stop="87464" i_length="69"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="87465" e_stop="87720" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81232" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85215"/>
              <exon start="85296" stop="85439"/>
              <exon start="86819" stop="86926"/>
              <exon start="87344" stop="87395"/>
              <exon start="87465" stop="87713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81238" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81247" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81419" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85108" stop="85215"/>
              <exon start="85296" stop="85311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85297" stop="85439"/>
              <exon start="86819" stop="86926"/>
              <exon start="87344" stop="87395"/>
              <exon start="87465" stop="87720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA : GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA : ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</gDNA_template>
            <first_frame> C  E  E  N  A  L  N  H  I  V  I  I  R  R  P  Y  I  V  L  *  V  F  K  S  L  R  K  L  G  T  C  S  C  C  F  V  S  S  F  A  K  T  Y  D  C  V  D  T  V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   L  P  T  C  S  V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R :   L  K  E  S  G  N  A  R  I  R  T  W  L  S  Y  P  R  L  L  K  S  L  K  I  S  L  C  L  S  R  S  T  T  W  T  E :   N  P  T  L  K  P  M  P  R  Q  I  *  P  C  I  S  R  :  M  A  K  F  K  W  N  V  T  *  *  L  N  *  V  T  N  Y  Y  L  N  L  L  G  F  R  K  *  *  M  T  A  K  T  D  Q  F  G  Y  S  V  V  *  N  Y  T  C  N  M  *  I  Y  D  L  N  Y  V  H  V  T  *  L  C  I  W  I  E  S  S  F  C  C  N  L  I  C  N  E  N  W  L  G  Q  V  H  </first_frame>
            <second_frame>  V  K  K  M  P  *  I  I  *  *  *  Y  V  D  R  T  L  F  S  E  S  S  N  R  *  G  N  W  A  L  V  V  V  V  S  F  R  L  L  L  K  L  M  I  V  L  I  Q  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : F  S  L  H  A  V  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A   : D  S  R  N  L  E  M  Q  E  S  E  H  G  *  A  I  Q  D  C  *  R  A  *  R  S  V  Y  V  F  P  D  Q  P  H  G  Q   : R  I  Q  H  *  S  R  C  P  G  K  F  S  R  V  S  Q  E :   W  R  N  S  S  G  M  *  H  D  N  L  I  K  S  P  T  T  T  S  T  C  W  D  L  G  N  D  E  *  P  P  R  Q  T  N  L  D  I  Q  L  S  E  T  T  L  V  T  C  R  Y  M  I  *  I  M  C  M  *  P  N  Y  V  S  G  L  K  V  A  S  A  V  T  *  F  A  M  K  I  G  W  D  K  Y  T </second_frame>
            <third_frame>   *  R  K  C  P  K  S  Y  S  N  N  T  *  T  V  H  C  S  L  S  L  Q  I  V  E  E  I  G  H  L  *  L  L  F  R  F  V  F  C  *  N  L  *  L  C  *  Y  S  A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  S  P  Y  M  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  Q  F  M  S  F  Q  I  N  H  M  D  R  :  E  S  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : N  G  E  I  Q  V  E  C  D  M  I  T  *  L  S  H  Q  L  L  P  Q  L  V  G  I  *  E  M  M  N  D  R  Q  D  R  P  I  W  I  F  S  C  L  K  L  H  L  *  H  V  D  I  *  S  E  L  C  A  C  N  L  I  M  Y  L  D  *  K  *  L  L  L  *  P  N  L  Q  *  K  L  V  G  T  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81372" stop="81527"/>
                    <exon start="81821" stop="81979"/>
                    <exon start="83765" stop="83824"/>
                    <exon start="84174" stop="84272"/>
                    <exon start="85108" stop="85215"/>
                    <exon start="85296" stop="85439"/>
                    <exon start="86819" stop="86926"/>
                    <exon start="87344" stop="87395"/>
                    <exon start="87465" stop="87502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="81238" e_stop="81527"/>
            <exon e_start="81821" e_stop="81979"/>
            <exon e_start="83765" e_stop="83824"/>
            <exon e_start="84174" e_stop="84272"/>
            <exon e_start="85123" e_stop="85202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.677" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81238" e_stop="81527" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81528" i_stop="81820" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81821" e_stop="81979" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81980" i_stop="83764" i_length="1785"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83765" e_stop="83824" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83825" i_stop="84173" i_length="349"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84174" e_stop="84272" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.677">
            <gDNA_intron_boundary i_start="84273" i_stop="85122" i_length="850"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="85123" e_stop="85202" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81238" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84272"/>
              <exon start="85123" stop="85202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81238" stop="81527"/>
              <exon start="81821" stop="81979"/>
              <exon start="83765" stop="83824"/>
              <exon start="84174" stop="84203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGC</gDNA_template>
            <first_frame> E  N  A  L  N  H  I  V  I  I  R  R  P  Y  I  V  L  *  V  F  K  S  L  R  K  L  G  T  C  S  C  C  F  V  S  S  F  A  K  T  Y  D  C  V  D  T  V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  </first_frame>
            <second_frame>  K  M  P  *  I  I  *  *  *  Y  V  D  R  T  L  F  S  E  S  S  N  R  *  G  N  W  A  L  V  V  V  V  S  F  R  L  L  L  K  L  M  I  V  L  I  Q  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : L  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C </second_frame>
            <third_frame>   K  C  P  K  S  Y  S  N  N  T  *  T  V  H  C  S  L  S  L  Q  I  V  E  E  I  G  H  L  *  L  L  F  R  F  V  F  C  *  N  L  *  L  C  *  Y  S  A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81372" stop="81527"/>
                    <exon start="81821" stop="81979"/>
                    <exon start="83765" stop="83824"/>
                    <exon start="84174" stop="84272"/>
                    <exon start="85123" stop="85200"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPCSCILEFDGASKGNPGLAGAGAVLRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="88133" PGL_stop="95316"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88140" e_stop="88178"/>
            <exon e_start="88469" e_stop="88618"/>
            <exon e_start="88840" e_stop="88998"/>
            <exon e_start="90813" e_stop="90872"/>
            <exon e_start="91469" e_stop="91567"/>
            <exon e_start="92871" e_stop="92978"/>
            <exon e_start="93058" e_stop="93201"/>
            <exon e_start="94380" e_stop="94487"/>
            <exon e_start="94917" e_stop="94968"/>
            <exon e_start="95036" e_stop="95309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88140" e_stop="88178" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88469" e_stop="88618" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88840" e_stop="88998" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90813" e_stop="90872" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91469" e_stop="91567" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92871" e_stop="92978" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93058" e_stop="93201" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94380" e_stop="94487" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94917" e_stop="94968" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="95036" e_stop="95309" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88140" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92871" stop="92978"/>
              <exon start="93058" stop="93201"/>
              <exon start="94380" stop="94486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88145" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92871" stop="92978"/>
              <exon start="93058" stop="93104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88146" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92871" stop="92963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88158" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88490" stop="88618"/>
              <exon start="88840" stop="88863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92957" stop="92978"/>
              <exon start="93058" stop="93201"/>
              <exon start="94380" stop="94487"/>
              <exon start="94917" stop="94968"/>
              <exon start="95036" stop="95309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94400" stop="94487"/>
              <exon start="94917" stop="94968"/>
              <exon start="95036" stop="95287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </first_frame>
            <second_frame>  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </second_frame>
            <third_frame>   S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88520" stop="88618"/>
                    <exon start="88840" stop="88998"/>
                    <exon start="90813" stop="90872"/>
                    <exon start="91469" stop="91567"/>
                    <exon start="92871" stop="92978"/>
                    <exon start="93058" stop="93201"/>
                    <exon start="94380" stop="94487"/>
                    <exon start="94917" stop="94968"/>
                    <exon start="95036" stop="95076"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88133" e_stop="88178"/>
            <exon e_start="88469" e_stop="88618"/>
            <exon e_start="88840" e_stop="88998"/>
            <exon e_start="90813" e_stop="90872"/>
            <exon e_start="91469" e_stop="91567"/>
            <exon e_start="92886" e_stop="92978"/>
            <exon e_start="93058" e_stop="93201"/>
            <exon e_start="94380" e_stop="94487"/>
            <exon e_start="94917" e_stop="94968"/>
            <exon e_start="95036" e_stop="95309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.556" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88133" e_stop="88178" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88469" e_stop="88618" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88840" e_stop="88998" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90813" e_stop="90872" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91469" e_stop="91567" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.556">
            <gDNA_intron_boundary i_start="91568" i_stop="92885" i_length="1318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92886" e_stop="92978" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92979" i_stop="93057" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93058" e_stop="93201" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="93202" i_stop="94379" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94380" e_stop="94487" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94917" e_stop="94968" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="95036" e_stop="95309" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88133" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92886" stop="92978"/>
              <exon start="93058" stop="93201"/>
              <exon start="94380" stop="94487"/>
              <exon start="94917" stop="94946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88158" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88163" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92886" stop="92963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88484" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92886" stop="92978"/>
              <exon start="93058" stop="93201"/>
              <exon start="94380" stop="94424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88490" stop="88618"/>
              <exon start="88840" stop="88863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92957" stop="92978"/>
              <exon start="93058" stop="93201"/>
              <exon start="94380" stop="94487"/>
              <exon start="94917" stop="94968"/>
              <exon start="95036" stop="95309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94400" stop="94487"/>
              <exon start="94917" stop="94968"/>
              <exon start="95036" stop="95287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> L  F  P  S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : L  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </first_frame>
            <second_frame>  S  S  Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </second_frame>
            <third_frame>   L  P  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88520" stop="88618"/>
                    <exon start="88840" stop="88998"/>
                    <exon start="90813" stop="90872"/>
                    <exon start="91469" stop="91567"/>
                    <exon start="92886" stop="92978"/>
                    <exon start="93058" stop="93201"/>
                    <exon start="94380" stop="94487"/>
                    <exon start="94917" stop="94968"/>
                    <exon start="95036" stop="95076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="88146" e_stop="88178"/>
            <exon e_start="88469" e_stop="88618"/>
            <exon e_start="88840" e_stop="88998"/>
            <exon e_start="90813" e_stop="90872"/>
            <exon e_start="91469" e_stop="91567"/>
            <exon e_start="92871" e_stop="93146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88146" e_stop="88178" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88179" i_stop="88468" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88469" e_stop="88618" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88619" i_stop="88839" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88840" e_stop="88998" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88999" i_stop="90812" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90813" e_stop="90872" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90873" i_stop="91468" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91469" e_stop="91567" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="91568" i_stop="92870" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="0.967">
            <gDNA_exon_boundary e_start="92871" e_stop="93146" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88146" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92871" stop="92963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88158" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91567"/>
              <exon start="92871" stop="93146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88158" stop="88178"/>
              <exon start="88469" stop="88618"/>
              <exon start="88840" stop="88998"/>
              <exon start="90813" stop="90872"/>
              <exon start="91469" stop="91533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88490" stop="88618"/>
              <exon start="88840" stop="88863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGA</gDNA_template>
            <first_frame> P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  V  C  S  L  S  I  *  E  M  W  F  V  T  I  N  L  Q  V  F  D  L  *  F  F  S  V  G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  * </first_frame>
            <second_frame>  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W  Y  A  P  F  P  F  R  R  C  G  L  S  P  *  I  Y  R  F  S  T  C  S  S  F  L  *  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L   </second_frame>
            <third_frame>   N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y  G  M  L  P  F  H  L  G  D  V  V  C  H  H  K  F  T  G  F  R  L  V  V  L  F  C  R  F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88520" stop="88618"/>
                    <exon start="88840" stop="88998"/>
                    <exon start="90813" stop="90872"/>
                    <exon start="91469" stop="91567"/>
                    <exon start="92871" stop="92999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVCSLSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="94376" e_stop="94487"/>
            <exon e_start="94917" e_stop="94968"/>
            <exon e_start="95036" e_stop="95316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="0.989"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="94376" e_stop="94487" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="94488" i_stop="94916" i_length="429"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94917" e_stop="94968" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="94969" i_stop="95035" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95036" e_stop="95316" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94376" stop="94487"/>
              <exon start="94917" stop="94968"/>
              <exon start="95036" stop="95316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578376" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94400" stop="94487"/>
              <exon start="94917" stop="94968"/>
              <exon start="95036" stop="95287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTGAA</gDNA_template>
            <first_frame> T  D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A  L  *  </first_frame>
            <second_frame>  Q  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *  H  F  E </second_frame>
            <third_frame>   R  L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94377" stop="94487"/>
                    <exon start="94917" stop="94968"/>
                    <exon start="95036" stop="95076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="91580" e_stop="92037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91580" e_stop="92037" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91580" stop="92037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</gDNA_template>
            <first_frame> F  Y  L  T  I  L  C  I  N  T  F  K  F  L  S  L  S  A  L  S  G  C  *  H  S  W  G  G  V  R  V  V  I  W  W  V  V  S  L  G  K  G  L  L  L  C  F  D  F  I  L  L  L  A  E  T  S  E  D  S  D  A  Y  W  S  *  F  G  K  *  K  V  E  K  S  *  F  G  N  H  *  S  K  G  D  Q  V  I  L  K  S  N  C  K  G  K  V  E  H  C  W  L  T  L  R  K  S  P  K  L  E  D  G  D  K  I  Y  M  *  S  M  L  L  G  F  S  K  K  *  C  C  T  H  A  R  S  S  K  M  H  Y  F  *  R  I  R  H  A  L  I  N  I   </first_frame>
            <second_frame>  F  T  *  Q  F  F  V  S  I  R  L  N  S  C  H  C  L  L  Y  L  D  V  D  I  L  G  V  G  *  G  W  *  F  G  G  W  L  A  L  E  R  A  C  S  Y  V  L  T  L  F  C  C  W  P  K  L  V  R  I  V  M  R  I  G  A  D  L  E  N  K  R  L  R  S  P  D  S  A  T  T  D  P  R  G  T  K  *  F  L  N  Q  T  V  R  A  K  W  N  I  V  G  *  R  C  A  K  V  Q  S  W  K  M  V  T  K  F  I  C  N  L  C  C  W  D  S  P  R  N  S  A  A  P  M  L  D  P  P  K  C  T  T  F  E  G  F  D  M  L  S  S  T  F  </second_frame>
            <third_frame>   L  P  N  N  S  L  Y  Q  Y  V  *  I  L  V  I  V  C  F  I  W  M  L  T  F  L  G  W  G  E  G  G  D  L  V  G  G  *  P  W  K  G  L  A  P  M  F  *  L  Y  S  A  A  G  R  N  *  *  G  *  *  C  V  L  E  L  I  W  K  I  K  G  *  E  V  L  I  R  Q  P  L  I  Q  G  G  P  S  D  S  *  I  K  L  *  G  Q  S  G  T  L  L  V  N  V  A  Q  K  S  K  V  G  R  W  *  Q  N  L  Y  V  I  Y  V  A  G  I  L  Q  E  I  V  L  H  P  C  *  I  L  Q  N  A  L  L  L  K  D  S  T  C  S  H  Q  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0065M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="95748" PGL_stop="96891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95748" e_stop="96143"/>
            <exon e_start="96842" e_stop="96891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95748" e_stop="96143" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96144" i_stop="96841" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96842" e_stop="96891" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95748" stop="96143"/>
              <exon start="96842" stop="96886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95753" stop="96143"/>
              <exon start="96842" stop="96891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95756" stop="96108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</gDNA_template>
            <first_frame> S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S   </first_frame>
            <second_frame>  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  </second_frame>
            <third_frame>   L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0065M14.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95763" stop="96143"/>
                    <exon start="96842" stop="96889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 188 chains have been computed
$ 
$ memory statistics:
$ 638624 bytes spliced alignments in total
$ 130 spliced alignments have been stored
$ 4912 bytes was the average size of a spliced alignment
$ 33536 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1676 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 202 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:39:40
-->
