<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:34:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574690" ref_strand="+" ref_description="SGN-U574690 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|2582381|gb|AAC49874.1| (e_value=9e-43) cation-chloride co-transporter [Nicotiana tabacum]; (*ATH) AT1G30450.2 (e_value=3e-22)  Symbol: None | cation-chloride cotransporter, putative, similar to cation-chloride co-transporter GB:AAC49874 GI:2582381 from (Nicotiana tabacum), Cation-Chloride Cotransporter (CCC) Family Member, PMID:11500563 | chr1:10762721-10769514 FORWARD | Al... ; ">
      <seq>gctgaatcgcagcttaaaaaccccttttctcgcggttaacactttccggtttgggtagttcagacttgactgctttgaattcgggaggcaatggaaggtggagaagagattgagattgcggaggaaaatgagttcccttcagttattggacgaaaatacagtccagtggtggcgcatgacaatgatagtgcagttattgagatgtcttctgttcgtcccggatcttcctcttctctccccaaccacgatctcaagaacgtcaaagtaggtgtccatccaaatatggcatctgaagaaagagacgagtcattatccaatcatagtagcaatggtcctcaaagagaatccaaactggaattatttggctttgattctctagtaaatattctaggtctcaagagtatgacaggggatcaaattcccgcaccgtctagtccaagagatggtgaggatataactctcacgcttgagcaacctaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="22456" stop="5682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22157" g_stop="21904" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21903" i_stop="19949" i_length="1955">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19948" g_stop="19802" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="401" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19801" i_stop="17767" i_length="2035">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17766" g_stop="17688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="480" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17687" i_stop="6333" i_length="11355">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6332" g_stop="5981" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="832" r_length="352" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U574690" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22157" e_stop="21904"/>
          <exon e_start="19948" e_stop="19802"/>
          <exon e_start="17766" e_stop="17688"/>
          <exon e_start="6332" e_stop="5981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAAGTATTTTCTCTTTCTCTATGTTTTCTCGTTTTGACTAGTATTGACTAGTAGTGTACTAATAGCTCTGGGATTTGATGGCACTGAATTATGAAATTTTTTACTTTGTTTTTTTTAAGCATTTAAGAATTTGAGAACAATTAATAGAGACCGTAAGTATTGATGTTAAATTTATGTCTGAGCTTACTTCTAAGTGTGGATTTGGGTCAACATTTCTTCCATTTATCATGTCTATTGTTTTCCACTTTGGTTGTTAGTTAGGTATGAAAGAAATTGTTTTTCATGAAAATATTTTCTAAGAAAATGAGTTTTTTTTTTTGGTATTATATACAGCAAAAAGTATTATCTTGAAAGTGTTTTAATCTAGACAAATACTATATGGAGTTGGGGGTGGAGAGTGATGGATGGGGATGGGAGCTATGGGGAAGGGGTGAAGATGAGGTGAGTTGGAAGCTGAGAAGGAAACAATCTTGTGAAACTTGTTTTTCCTACTTTTATTGGGGAAGTCATTTTCCTTCTTTGTTTTTTCTTTTATAAAGAAAATGTTTTCAAAAATACTAACGAACCAAACATAGGAAAATTGGAAAATATTTTCGTCTGTACCGAGCACATCCTCAATGTACATAGTTTGTCTTTGCCATGGTTTGGACATTGTTTTGTAGGTAAATGGGTCAGTGGAAATACTACTGAAATCTATGGTTAGGCTTTCATATTAGTATAATTACTTGAATGTTGTGGAACTATTTTCTCATCCATCCTCTCACTTATGTTTTGAAACTTCAAGGGCATAAAAGATTAACAATTTGACTCAAAGTCAATTCTCCTAATAAACTTTGATGAATTTGAAATATTAAGTATCTCTATTTAAATGTTGAGTATGTTAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAGATTTTTTTTATTTTGAAATTGGCAACATGTTATATTCATCAACACCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAATATTCATCAACATCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACATACAAAGAGGCCAAGAAGTCTAGTAATGATTCTGCATCATCTACTAGCTGTTCTTAACACCAAAAATAAAAAAGAGAAATGCAGGAACTCCTGGTCTTCTGTATTGAACTGCTCTTGCTCTCGAAACATTTTGCATTCCTTTATTTCCAAATTGTACACCATATGCAAAGAGTATTGGCTCAATTGGAAATAGTGACATTCATCTATCAGTTATTTATCAACTAAATATACTAGTTCGGATTTGCTTCATTTGTGCGTTGTGAAGTAGATGCTGGTTCTCTCTGGGAATGCGAAACAAAAAAGCTTCATGATAAACTAGACCCAGTAGCTTCCATTTGATAACTCACATTTTAACTCTTTGATACTCTCTTAATGGAAGTGCTTACTTTCTTCGATCGCTCGAACATTATCACTTAGGGTTAAGAATATCTCAAAGCTTGCCTATGGATATACTTTTGGATGTTTGATAGCTTTCTCTACAAGTTTACAAGTTAATGTTTTAGATATTCTCTGCTCCTTGACCCCCCCCGACTATGTTTAAAAATTTAATATTTGTACACATTTAGTGAATTCTTTATTCATGCATGGTTTGAGCCAATACTACTGGTTCGGCTGTACCACTAGCTATTACTATAGATCCGTCCATGGTGCTCAACTGCTTACTCACATGCTCCAATACATTGGCTACATCCGCATGCCCACCATATTTTTTAATATTAAAGGGTTTGCAGATATCTAGACAAGAATTTTGTTTTGTCCCTTTCTTTTCTCTGGGAAATCATTTCAACCTTTATTCTGATTACACCATTTTTCAGGAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAGGTAAGAGGTACAAATTCTATGTCTCTTTTGTTTTATTTTCCACAAACTTCTATTCGCTGGTATGATATATTTCAGGAAACTCGTTTTTGCTCTCGTCATTTTTTACTTAATAACTTTCTTGAGATAGTTGCATTTTGACATCATTGGAGTAAATTTTAAGTTTTCTGGTGGGCAATGCAAATCAAAGTCAAGACACCAAAGCTCTTCCGTCTATCTAGAACGTACTTATAGTGCTTCCGGCTACCATCTCTGTTAGTCCAGCATGCTTTCCTCTCAGCAACGTTTCCTCCAAATTTCGTATATCTTTTACTTTCTTAGTCATATTGGGCTCTCAAAACTTTATCTGCGGATTTTCTTTAAGTGATTATTTGAGTTTCCTCATTTGAAGGTTAAATTTTTGATATACAAAGTATTCTTTCTAGCTAGAAAGCAACTAAAAATGTACATCAATAGTTTTTGATCACATTCTTGTACATATTTTGGTAGGGTAAATTTTTGTGTTTTTACTCATATTTCCTGTTATTCATTTTTATTGTCAAGACTCAAAATGGAGAGGAGAATGTTCTTTTCCTAGTTGAAATCGTGCGAGATTTTAGAAGGCAATGCATGTAGATTCAATTGGTCTGAAAGAAGAATAAATTTTGTTAATAAAATAAATTTAGGATGCAGAAATTTGTTGGGTTTCTGAACGCACTGAGATCAGTCAACATCTAATTCCATTCAAAAAATAAATGGAAATGCATTGTATCTCTATTTTTTTTGGTGCAAAGAGCAGTGTATAGAGGACATAGACCAACTTGTTGATTTGTTAGGAACTTTGTTACTTTTTTTAGTACCCTTAATGCTAGGGATACAATTTACCAGTTTCACAAAACAAAACAAAATATGAATACAACAATTTATCAAAGCATATGCAGTGTATAACTAACTCGGAGCTCAACAGGTTTTAAACTGTACTTGCGAATGAGGTTTATGCTCAACAAGTGTCAAAACTCAGCCAATGCATGCTAATCTATTCAAATAATAGTTCATGGTGTCAAATACACCCAAACAACTTACTACTGAACTTGGCTGGTTTGCTTTATGTGGCTGGTTACAAACAGTTCATGCGTCACTCAACACAACTTTTCGGAAAGAGGGTTATTTATATGCAGTAGGTGTTTCTCTACCTTCACAAGGTAGGGAAAAGGCTGCGTACACATGACCATCCTCAGAGCCCACTTGTGGGATTACACTAGGTATTATGTTGTTGTTATAGTAGGTATCTCCCGTGCAGCAGTGAGGAAGCAAACTGTGACCCCCCTCTTCTTCAATGCCTAGTGGCAGATGAAATACCATCACTATATCGTAATATATTCAGGATACCTTTTGTTATGGCATGCACAGTAAGGGAGCTATTTACCAGCTGGGTTTTGGGGGAATTAGAATATCATCTAGGAAGGTTTGGAACACAGTGCATGCTTGTGTTTGTTGGGTATTGTGGAAGGGAATGAATACCAGATGTTTCAAAGGGAAACGAGGGTGGTTTCAAGACCTAGCAGGCTCTTATTTCTGTTGATTAAGATGATGAGATCAAATATAATAGATAGTTATCCTGGCCAAGAATGTGTCTGATCGCACCCTAGTTAAGAAAAAGCCATGGAGTCTACTGTAAGGAAAATGAACTAAAAAGAAAGTAGATTATGGTTTACTATCCAAGCTTGCTTGCTTTAGGTAATTTGGACAGACAGGAGTCAATCCTAATGGAAAAGCAGAGTCATCTGGTAGATTTTGATACAAATGTTCTTTTTATGGTCGTTTTGGTTTAACATTCTGGATGTATATGGTTTAGAGTTTTATTTTGGTTGCAAAGCTCCGCTTTTGTTTTGTGGGAGACTGGATTTTGTACTGCAGTGTTCTTCCACCTCTTGTTTGCTTTTTGTATAAAATAAATTGTTTACTTGTCCAAAAAAATGTCCTTAACAACTACTTTCTAACTTCAGTTTTCTCTCAATTTTGTGGTTTTATAATGTTCTTATCAATCTTGTTGTTCCAGTATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAGGTACTTGAACTAATTTGTTGAGCATCGTTTTATTTCCCTGAAGCTTTCCGTGCCATGCACAATTAAGACTGTATCATGTTCATAGAAGTCCTGAAGTAGAATTCACTTTCTTGATTCCCGTGGATTCATTTTCATCTCCTATGCCTATACCTAGTGGGAAAAATTGGGGACTTCCCTTTTCTGAATAAATAGTAAAGGACAGTAGGCTATATAGGGCTGTAAAATGGAGGTTATAAGAAGACAACAGTATGTAATACTTAAGGTTTTCGACTTAGAGTGTCACTATATAATTGTCAACTTTTAATCACACCATTCCAAATTCATTCTTTTATAAAAGTGTTAACATGCAATTACTCCCATTTTCTTGTGAGAGAATTTCCTTCTTATTGATTTATGAACATATTCGAGGTGATTTAAACTTCCTTTTCAAAAAAAAGGAAGAAAACGTTGGAGGTAATTTAGATGTCCTTATATAAGAAAAAAACATATTGGAGGTAATTTAAACTTTAAAAGCTGGTTCTTTTGATCCCTGATATAATACAAAGTTACCATTTTTTTTTAAAGAAGAAGCTGTTTCGTTATGATAGCTAGGATCTTTTCCAGTAATGTGGGAAACAAGTGGAGAAAAGAAACAGGATATCTTTAGTTTAGCTGTTCCTAGGTTTAGATTAATGTTTAAGTTGTTTAGCTGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTTTAGATTAATGTTTAAGTTGTTTAGGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTAAGTTATCTTTTGTTTCCCTGGATATCTGTAATCCTATTTGTCTTAGGAGTTCAGTTATAATTCAAACAATTAGTTTTATCCTTATTAGAAAAGGATTTTAGTCAGCTCATGAAAAAATATTCATATGGTGTTTAATTCTGTATGGGGAATTTTATTTTGATCTCCCAATGGTTTTCGCAGAACCTTTTATTGCTTATTTGGTGCTTTATGCAACCTTAACTGAGGAGGTTATTCCTAGGTAATTCTAGCTTCTTTGGTTTACTGCTTTATTTCATAGGTGCTTGAATGCTAATGGTTGGTGAATCCCCTCTATCCTCCACCAGCTATTGTTGGCTCACACTGAACTTCCTTAAAACCATTCTAGATTTAAATACATAGCTACTGCTTAGTTCTTTTTTGTCATCCCTCTATCAATCAGCCATTTGTCTCACACTGACTTCCTAAAGATTATTCCAGCTTTAGATATGTTGATAACTATGTTGTTGCATTATTCTTTATCTTGTAAAGAAGAAAGTGTGACTCACATGTTTGTTTCCAATAAGAGAGGATAGATGTGGAACTTGTTGATGAGCTTTAGATATGCAGCTAATTGCTTAGTTGCACTGTTCATTCTCTTGCAAAGAAAATGAGAGTGACTGTCAGATGTTTGTTTCCACAGAGAAAACATAGCTGTGAATTTTGTTGATGTATTCATGGTTTCATTGATGCTTGATCATTGTGGTTGGCATGCTTCCTCTGCGGACACCATTTTTCCTAAATAAACAAGCTGAGCTTTTAGATTTTATTGCAAAGAGGAAGATGTTGTAATCAAAAGAGAATAATAGAACACGCATAAATGAGTAACGATATGAGTGTTATCATACATCACTTTAATGACAACAAGGCCCCTAAAGGCATCTTTGATTTAGCTAACCATCTCTTATCATCACTCAGATTTGTTTCTAAAAGTAATTTTAATATTGTTTCTAAAATTCTAAGTGATCGAAACATCATAGGTTTCTTGTCCTAAAAAATAAAAAAACTGATTGGGGAGGGTCGCAAGCCTCTTAATCACACTATCAAGAAATAGAAAAAATAGCTTGAACTAAGAAACTCACGGGAAGAGGTATTTACTGATTGGATGACGAGATTCTTCTTATGTTGTGCTCAAACGAGGATTTTTGGCCTTGTGGTATTGGTATATAAACCCTTGCAGAATTCAAGAAAGACTCGAACAGATGTAACGGTCACAACAGGTCCCAATGCTTCTTTCCCCGGACGTTGTTGGTGAATGCACAAGGAGTAGTTTCTTAGAAAGACTTTGATATCATGTGAGGAAGAAGTTCTTTTGCTGCTTTTACTAGCTTGCTTTGATATCAGATGATTTTTTTTTTGTTTCAGAAATGGAAATCTCTGCATCCTACTATAGTGAAACACAAAATTTTGAACATTGTTATAACTTATAGGTTATCTACCCTCTCTCTTGCGTGTTTCCCTCCGATTCTAGCTTCTTTTGCTGATGTTTATTTATGGAGTTACTTTTTCCTGCTAAATACTGAACACAATGCAATATAGAGTTGTATATATCTGCAGTTTCTAGTTCAATCTTCACTTAATTTCAACTTGTTATCTCCTATGCTGTCAATTTGTCTTATAACCTTCACATGTTCTTTTATCTTGTGTGTCAACATTTGAAAATAAGACTTTGACAATGCTTGGACGTACCTGGATAGTTAATTTTTGTATTGATGGGTTGCTTAAAGAAGCTCTTGAGTGCATTTTAATCATCTCTATATGTGAATTTTTTGAAGCCAACTGCTGATAAATCTGGCACGCTGATGGGAGTGTTTATGCCATGCTTGCAAAATATTTTGGGGATCATCTACTACATTAGATTTTCGTGGTAAGTTTGCTTACTATCTAATGTATCATGTGATTTATATCAAACTCTTTTTTGGTTAAAGTTTCATGTCTTAATAAAAGTGGACTGGTTCTGTATTCCTAAACGGGCACCTCAAGGACTATGGTGAACCTGCTTTTCAGTTTCAATACTACACATTTTGCATGTTATACTTGCATCTTGCTGGTTTCTCTTACTATATGGAAGTTTGGTGGGTGATGTTCAAGCAATTTAGTCTACATTACTATAGTACCAATCAGCTCTTCTCGTTACTCCAGAAAGGCGTGGTTATACTGGTATCATGAAATACTCAAACTGATCTGCTCCTGCCCCCACCTTTGACATTTTCTAATATAGAAATTAATTACTGTGAGTAGAGATAGAAGGGGAGAAAAGTTATCTTCAGGTAAGATAAGGAAGTGAAAAGGAACAGGAGAAGGGAACAATGAACAAATGCACCCACTACCTATGATCTACTACTGTTAGTTTGATGATATCCTTTTTCGCTCCAACTCAAATAACCACTCTATTTGTGTTGGTTTGTTTTTGTGTATACTGCAGGATTGTTGGTATGGCAGGCATTGGCGAGTCATTGTTGCTGGTTGTGTTCTGTGGATCATGTACATTCCTGACCACGATATCATTAAGTGCTATTGCAAGCAATGGTGCCATGAAGGTGGGAAAAAAATCATCAGATACAACTTCTGTGCAGATTAAAAGGATAGATTTTTAATTTCGTTTCCAGTATAACAAGCTTGCTTTGATATGTGTATCTCTGTTGCCCAGCATTGGCTAGACAATAATATGGATGAATTCTGTGTCTGTCATTCCACCTTATGTAAAAGCTCAACCCGTTAGAGAGAGCATACTTTTAATTACTTAACTATGTGTTTCAACGATCTCCTTGTAGCTTATTTGTTAAGTGATATCCTAGATTTGTTTTCTCTAATCTAGGGTGGTGGCCCTTACTATCTCATTGGTCGTGCATTGGGTCCAGAAGTTGGTGTCAGCATTGGGCTCTGTTTTTTCCTTGGGAATGCAATTGCTGGTGCAATGTGAGTATACATCTGATGTTATATTTTTGTGTGAAGGAACTACTTACTTAGCTGGGGTGTGGGGGTGTGGGTGGGGGTGGGTGGGTGGGTGTGTATGCCAATGTAGGTTAAGTTGCTTCATTATTTCAAACTATCTACAAAAAGATTTTGTGTTGATGCCTGCTCTTATATGTTCCTGCCGGTTAGGTATGTACTGGGAGCCGTAGAGACTTTTCTAAATGCTGTACCAAGTGCGGGCATCTTTAGAGGTATTCCTTAAATGAGATTGAACTTTTATGATTTAGAAAATGGCTTGGTGTTGTCTGTACTTCTACGGTAAAACCATCTGATATCCTTCTGGCTTTATCATAACATTGATACAAGTAACTTATTGTTGATTTTTGATGGATAGTACTGTATTATTTTCAAATTCATTTGTATATCTGAACTTCATTTGTCATCAATGCAGAAACTATCACACGAGTTAATGGCACAGATATTGCAGAGCCCATTACAAGTCCAAGTTTGCATGACCTGCAAATTTATGGGATTGTTGTATCTATTCTTCTCTGCTTTGTCGTGTTTGGTGGAGTAAAAATGATCAATCGCGTTGCACCTGCATTTCTTGTCCCTGTTTTGTTCTCATTGCTTTGCATATTTGTCGGCATCTTTTCTGCGAGGCATGATCATCCAGCAGGTTTATGTTGTCTATGCCTTATTCTTATTCTTTCCTGTCTTACTTGAGAGTTTTTTTTAAAACTGTGTGTTATTCTTATGTGCTATACACTTCCCTTGCATACTCCCTCTGTTTCATTTTAGGTGACTTACATTTTTTAATTTGTTTCGGAAAGAATAACTACTTTCTTGGTTTGGAAATTCTGTAACTTTAAACTTCCTATTTTACTATTAATTACATTCTCTTATTGTTGAAAATTGTCCTAACATGTTCAAGACCACGAATTCTCAAGTACTTTTGGTATGTGACAAAAGTTTTACTTTCTTTCTTAAATTTCTTGCCTAGTCAAACACTACATTCATCAGCTTTCGCTCTGTTAGTGGAGTCTATAGTGTACTGGTATTATTGAAATGGTTTTTAGTTCTTGATCTTAATTTGGTATCTCAACCTCGTTTATTTTCACTATTTTATGTTGCTTTAGTGATGAGCCTTCAGTAGTTCATACACCAATCTAGTTAATTTTATTAGCTTGAGGTCATCATGGAGTATAGTAAAGTCAAACATTGTTGTTTCTTTCCTTTGAACAAATTGCATCTTTGAAGCCATATATGGAAGTCAAGGGCTACATATTATTGATGATAAGCTGTAGAATACCAATTAATTACTGGTTTTGCTAATAAGAATAATGATTCTGAAGAACTATGAATCCAGGCAAAATATAGCTAACTTGGAAAGGCAATCAAGTAACATCAAAATCGTAAAACCACTACAAAAGAACTAGAGAAAGTTACCCAAAAGTAGTATAAAGTAAAGTAAAGATGGGTTCCTGTGTCATGATATCTCGAGGACTGGTGTAAAGTAAAGATGATTTAATTTTTGTGAATTATCTCTTTATTGATGGATATAGAAGATTCATATGGTCAATCCCAGAGGTATTTGCAAAAGTGTTACGTATGTCTGTTCTCCCTGAAGTTTTAATACTCATGGTTGTCATTTCTCATGTGACACCACCTTTTTACTCTGTTGCTATGCATGGTACAGTGGGGATCACAGGGTTGAGTTTGGAATCTTTCAAAAACAACTGGGGGTCTGCTTATCAGATGACTAATAATGCTGGAATTCCAGATCCCAATGGCGACATATACTGGAATTTTAAGTAAGTCATACAATTATTTTTGTTGGTTCCTTTATTTTGCACCATCTTTTTGCTAGGATTAGTTATTTGTTCTTCTTTCTGCCGTTTACTTCAATGTGCATACTGAAAGCATTTAGAACCAAGTCTTAACATTTATTTCCTTCTCCATGTTAGTGCATTGGTAGGTCTCTTCTTCCCTGCTGTAACTGGGATCATGGCAGGTTCGAACCGTTCGGCATCTCTAAAGGACACTCAACGTGCAATTCCTGTTGGGACCTTAGCTGCAACTTTGACTACCACCAGTTTATATCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAGGTATGTATGAGTATCTTTTTATAGTTTACACAGCTCACATTCTTTTGTACTGCTCTTTTCTTGTTTTCTCAGAACTCCCTGTTTCCTCCCATGTGTCATCTATATTTGGGCAAGATTGAGTGAGGGAAATACAAAAGCTAAGATTTTCACTGAAGGGGCCATAATGTACTCATTGTGATAGTTTTTTTTCCTATTAGTTTATGAGAAATTTTGTTACGTGTCCAGATCGTTATGTTGCATTTTTGTTCCATTTGATATAAAAATTCAAAATTTTACGAGAGAAATATGAAAGGACATCATTATCAAAATAAGAAATATGAAAGGACATGTGAAACTCTCACCACCTCTCATTTAATTGTTGATAGAGTTAGGGCAATTGTGGTAATTTGCAGTTTTCATATACTCCCTTTGTCCAACAGAAGTTATCCACTATACTATTTTAGGATGTCCAACAATACTTGCCCACTTTATGAAATCAATGGATAATTTTTCACTTACTTCCTGCTTTACCCTTATCACTAATTATAGTCATTTCCCTATTAGATTTTTCAAGACACTGTTTTTATTATATTCAAAGGGTATTATAGTAAAATTACTCTTCTATTAATAGTTTCTTAAGAAGTGTGCAAAGTCAATAGTAAACAAGTATTGTTGGACAGAGGGAGTACGTTGCTTATGAGTTAAAAATCTGAAACTGTGTGACCTTGGGTCACTTACTTTGTAGTGGTTATTCCTCTCTAACAAAAATTCAATTACAGTAAAATCCCATTGCCCTGGTTCATATTATAATTAACTTGTATTACCTACTATATGGAGGTACATATAAGCTTAAAAAAAGAAACAAAAATAAAATATCCCTTTTGTCACCACCGCTAAACCAAAAGAATAGAATTTATTTTGTGGAAATTATATTTTTCAATTAAGTGGAGTCTCCATTTAACATCTCTTTATGTGGTTAATCTTTCACCCAAAAAACATTCTAGGAAAACTGTACTTTCTGATCGAAGAACTTTGAGAGGTTTCAGAAATAATATAGCTCGTAATTTTAACAAGAAAACGAGCAATGCCACAATAACAGGAAAAAAGAAATATTAGTGATTAAACAGGAGCATAGATGTCTTTTTTATGGGTATAGTTTGTGCTGTAAAGTAAGGAAAGGAGCCTTATGTGCGCATATTAGAGCAAGAAGGGGTATTATTGTATGTAATGTTGCTAAAGTAAATAATTAGTACCTGTAGTTTAGCCAACATTATATCCCTCTTTAGCTGAGGTACAAAAGAGTTGGAGGCCTAAATTTGTGAAAAAAATTCTGGCTATGGTGGGACCACTTATACTATAATATACCAATGATATATCTATTTTGGAGATGGTGATCATTTTGTTACTTATCTGTTTGTGCTCTAAAATTCTTGTTCGTTGTGCGATTGTATGAAGTCTAGTTAGCTAATTAGCAGCGTGAAGATTAGATGACTTTTATGTTATATGTACAGGCATGGCTTATTTATTGGTTACTCCCTGTAGAATTCTGAATCATGGATTTTGGCATCATACAATTTCTGTCTATGAAATTAATGAATTAGCACCTTTTAAAAAGATTTAAGTGTCTGTTTGAGTTATTCTTGAGCCATTTCTGTTCTTCACGTAGACACTGCTTGGTCGGTCCTACTGCTATGTAGTGTGCAAATGAACTTCTAAGATTGATTAGCTGAATGTGATATAATATAAGTTTTAGGGTAAGTACATCGTCAATCCCTTGAATCTGCTAATAAATATCATTTAGACACTCGGAACAATGACATGTTCCAATTGAGCACCTAAACACATGGTAAAGTGTTCCTATAAGATATCTCCGGCTCATTTTAAAAAGTTTCTACATGTGTTCACAAACATCCATTATGTAGATAAGTTAATCACATAAAGTGTGCATCCTTTTTTAATTATCCATATCAACATCGATGAGAATTGCATAAGGAATGTGTGAATATATTGGCTATTATTTGATTAAAAATGGAAAATAATGTGTATGAATATATTGGCTATTACTTGATTAAAAAGTAATAATAGGTACAGACTTTAAATGGCAAACCTTCTTTTATTCTTCACTTTTTGTATGGTTATTGGAATAGACTGAATCACTAGAAATTCACATACTTCCCTCGAGTACTTTAATGTATTAAGTTATTAATTGTACAAAACAGAGATTGAAGACTACAACTTTATCATTCAGGAATTTCTTTTCTTGGTTCACTATGTTTAAAAATGTAAGATTTTATATTTGTATGATCCTATTGAAACATTCTATTGCATATGCAGCAAACCAGGTACATCCGAAAAACTGGTATCCTATCCCACTTATATTTTGTCGTCCGTGGGGCAAGCTGCCAGAAAATGTGCCTTGCCATCCAAAGCTTGCCGACTTTGCCAACTGCATGAAGAAAAAAGGCAGGGGAATGTCCATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTAGC</genome_strand>
        <mrna_strand>GCTGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582665" ref_strand="+" ref_description="SGN-U582665 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|2582381|gb|AAC49874.1| (e_value=1e-84) cation-chloride co-transporter [Nicotiana tabacum]; (*ATH) AT1G30450.2 (e_value=3e-80)  Symbol: None | cation-chloride cotransporter, putative, similar to cation-chloride co-transporter GB:AAC49874 GI:2582381 from (Nicotiana tabacum), Cation-Chloride Cotransporter (CCC) Family Member, PMID:11500563 | chr1:10762721-10769514 FORWARD | Al... ; (*SWP) sp|Q9Y666|S12A7_HUMAN (e_value=3e-19) Solute carrier family 12 member 7 OS=Homo sapiens GN=SLC12A7; ">
      <seq>catctttgtctctattatcgatggagactaccatgaacgtgctgaggatgctaaggacgcttgcaaggaactaagtacctatattgactacaagcaatgtgaaggtgtagctgagattgttgttgccccaagcatgtctgaaggctttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaagacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctgtaagatacaggtgttctgcattgcagaggaagattctgatgcagagggattgaaggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="7386" stop="6282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7086" g_stop="6582" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U582665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7086" e_stop="6582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGAT</genome_strand>
        <mrna_strand>CATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583425" ref_strand="+" ref_description="SGN-U583425 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|2582381|gb|AAC49874.1| (e_value=3e-110) cation-chloride co-transporter [Nicotiana tabacum]; (*ATH) AT1G30450.2 (e_value=6e-106)  Symbol: None | cation-chloride cotransporter, putative, similar to cation-chloride co-transporter GB:AAC49874 GI:2582381 from (Nicotiana tabacum), Cation-Chloride Cotransporter (CCC) Family Member, PMID:11500563 | chr1:10762721-10769514 FORWARD | Al... ; (*SWP) sp|Q63632|S12A4_RAT (e_value=6e-45) Solute carrier family 12 member 4 OS=Rattus norvegicus GN=Slc12a4; ">
      <seq>tctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgcgatctttgggaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="12116" stop="9243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11816" g_stop="11757" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11756" i_stop="11123" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11122" g_stop="10722" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="461" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10721" i_stop="9704" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9703" g_stop="9542" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="623" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U583425" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11816" e_stop="11757"/>
          <exon e_start="11122" e_stop="10722"/>
          <exon e_start="9703" e_stop="9542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</genome_strand>
        <mrna_strand>TCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590962" ref_strand="+" ref_description="SGN-U590962 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaagctgacagtacaagcgtctgctagcagtaggatgtgtcaaaatccacttagggaaaacagacgcttaattaaacaaaacaaaaggaacaggttcaaacactaaaacaatatagagatctcatctaaagccaaaatgctcattcatcctcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="36037" stop="36792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36337" g_stop="36492" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U590962" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36337" e_stop="36492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTGAAAATTTAAGCATTTGATAGCAATAGGATGTGTCAAAATCCACTTCGGGAAAACAGAGTATTAATTAAACAAAACACAAGGAACAGGTTCAAACACTAAAACAATATAGAGATCTCATCTAAAGCCAAAATGCTCATTCATCCTCCTG</genome_strand>
        <mrna_strand>AAAAGCTGACAGTACAAGCGTCTGCTAGCAGTAGGATGTGTCAAAATCCACTTAGGGAAAACAGACGCTTAATTAAACAAAACAAAAGGAACAGGTTCAAACACTAAAACAATATAGAGATCTCATCTAAAGCCAAAATGCTCATTCATCCTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592129" ref_strand="+" ref_description="SGN-U592129 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|76161016|gb|ABA40471.1| (e_value=7e-14) ly200-like; (*ATH) AT4G18100.1 (e_value=2e-13) | Symbol: None | 60S ribosomal protein L32 (RPL32A), ribosomal protein L32, human, PIR1:R5HU32 | chr4:10035497-10036552 REVERSE | Aliases: F15J5.70, F15J5_70; (*SWP) sp|P49211|RL321_ARATH (e_value=2e-12) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A; ">
      <seq>cacttcggtaaaacagagtattaattaaacaaaacaaaaggaacaggttcaaacactaaaacaatatagagatctcatctaaagccaaaatgctcattcatcctcctggctgtgcaacctagcaagcttgtttgttatgacaacatcaagttgggcagctcgctcgacaatctctttcctcttcctagaggaaacatagggtgcgatttctgcacagcaagttctggtgggcatcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="36085" stop="36911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36385" g_stop="36610" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U592129" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36385" e_stop="36610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCGGGAAAACAGAGTATTAATTAAACAAAACACAAGGAACAGGTTCAAACACTAAAACAATATAGAGATCTCATCTAAAGCCAAAATGCTCATTCATCCTCCTGGCTGTGCAACCTAGCAAGCTTGTTTGTTATGACAACATCAAGTTGGGCAGCTCGCTCGACAATCTCTTTCCTCTTCCTAGTGGAAACATTGTGTGCGATTTCTGCACAGTAAGTTCTG</genome_strand>
        <mrna_strand>CACTTCGGTAAAACAGAGTATTAATTAAACAAAACAAAAGGAACAGGTTCAAACACTAAAACAATATAGAGATCTCATCTAAAGCCAAAATGCTCATTCATCCTCCTGGCTGTGCAACCTAGCAAGCTTGTTTGTTATGACAACATCAAGTTGGGCAGCTCGCTCGACAATCTCTTTCCTCTTCCTAGAGGAAACATAGGGTGCGATTTCTGCACAGCAAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593828" ref_strand="+" ref_description="SGN-U593828 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=8e-39) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=3e-39) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P46300|RS4_SOLTU (e_value=6e-40) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>ggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgtaagtgacatgtctttcctaagtctttttttttatagtactacttagtttcctgcttcttgacttgactgttctctttggtctctacttcaggctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctgggttcatgggtaagaacacctcccattggattgttttttcattttcaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42434" stop="44252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42734" g_stop="42799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43952" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="461" r_length="395" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U593828" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42734" e_stop="42799"/>
          <exon e_start="43558" e_stop="43952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCT-CCATTGGATTGTTTTTTCATTTCAAAACCT</genome_strand>
        <mrna_strand>GGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTT-CCTAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGGTTCATGGGTAAGAACACCTCCCATTGGATTGTTTTTTCATTTTCAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581547" ref_strand="+" ref_description="SGN-U581547 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=4e-105) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=2e-104) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P46300|RS4_SOLTU (e_value=3e-106) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>gtatcttcgactcgttagggtttaagacaaacacatctcgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcaaagatgaggaagccaaggtttaaacctgtttcctgcttcttctttattccggcttgctttgaatgctgtgctattaaagtagtgaccttgttttctgctctctgcagttcaaactttgcaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaagccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaaaaatagagagaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46310" stop="48888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46610" g_stop="46699" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="168" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="349" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48588" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="780" r_length="431" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U581547" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46610" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATT-AAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCAC</genome_strand>
        <mrna_strand>GTATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAAAGATGAGGAAGCCAAGGTTTAAACCTGTTTCCTGCTTCTTCTTTATTCCGGCTTGCTTTGAATGCTGTGCTATTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAAGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAAAATAGAGAGAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580419" ref_strand="+" ref_description="SGN-U580419 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=2e-97) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=8e-98) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P46300|RS4_SOLTU (e_value=1e-98) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>tggttgatgggaaaagtaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaatcagttgccttctatgttatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="47540" stop="49271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47840" g_stop="47890" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="149" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48346" g_stop="48971" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="775" r_length="626" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U580419" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47840" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</genome_strand>
        <mrna_strand>TGGTTGATGGGAAAAGTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579838" ref_strand="+" ref_description="SGN-U579838 Tomato 200607#2 [128 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=1e-143) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=7e-141) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P46300|RS4_SOLTU (e_value=7e-145) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>gatctcattagggttgaagacacacgcctctcgccggtagccgtcactcgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcacttgtttcaaaatgagtttttggttgtaatatcttcaaatccaacctgctgttgtattccaaagttggtgtagttcactaaacctgattcgtaatttcattttcataaacttcaaatgatgtgggttcttttgtcctactaattgtacaatcaaacataattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49328" stop="52465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49627" g_stop="49709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="161" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="342" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="52165" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="1276" r_length="836" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U579838" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1277</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49627" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="52165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATTAGGGTTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAAATGATGTGGGTTCTTTTGTCCTACTAATTGTACAATCAAACATAATTGTC</genome_strand>
        <mrna_strand>GATCTCATTAGGGTTGAAGACACACGCCTCTCGCCGGTAGCCGTCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAAATGATGTGGGTTCTTTTGTCCTACTAATTGTACAATCAAACATAATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593154" ref_strand="+" ref_description="SGN-U593154 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=1e-40) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=2e-41) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P46300|RS4_SOLTU (e_value=6e-42) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>tttcgagggacacacgcctctcgccggtagacgtgactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcatgggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacatgttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttctggttgatggcataagtataacacataagacttaccctgctggttgcatggacgttgccactattccatagactaatgatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49345" stop="51184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49646" g_stop="49709" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="73" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="151" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="332" r_length="181" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51173" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="365" r_length="33" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U593154" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49646" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCT</genome_strand>
        <mrna_strand>ACACACGCCTCTCGCCGGTAGACGTGACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATGGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACATGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTCTGGTTGATGGCATAAGTATAACACATAAGACTTACCCTGCTGGTTGCATGG................................................................................................................................................................................................................................................................ACGTTGCCACTATTCCATAGACTAATGATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579352" ref_strand="+" ref_description="SGN-U579352 Tomato 200607#2 [109 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=2e-140) 40S ribosomal protein S4; (*ATH) AT5G58420.1 (e_value=2e-139) | Symbol: None | 40S ribosomal protein S4 (RPS4D), ribosomal protein S4, Arabidopsis thaliana, PIR:T48480 | chr5:23636732-23638320 FORWARD | Aliases: MQJ2.1, MQJ2_1; (*SWP) sp|P46300|RS4_SOLTU (e_value=1e-141) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>ggcgattggcggccaatcggccgaattcccatggggatccgatatctcgttagggtttaggagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgttacagtttatgatctttgtcgatgagtttattcacttatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52853" stop="55800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53163" g_stop="53235" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="125" r_length="72" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="203" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="384" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="482" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55500" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="1159" r_length="677" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U579352" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1107</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53163" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTC</genome_strand>
        <mrna_strand>GGTTT-AGGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592389" ref_strand="+" ref_description="SGN-U592389 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggacctcaactgaggctttgttttttcctgacaaaaaaaggtaggtaaaatagtaccaagtacacagatgttgagactgcaacacaaaaaataagaacggaatccctctaaacaaagagaaaactgaccaaatgtattaaattaatttgaagtacatcctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="55723" stop="54961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55424" g_stop="55261" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U592389" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55424" e_stop="55261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTCAACTGAGTCTTTCTTTTTTCCTGACAAAAAAAGGTATGTAAAATAGTACCAAGTACACAGATGTTGA-AATGCAACACAAAAAATAAGAACGGCATCCCTCTAAACAAAGAGAAAAATGACCAAATCTATTAAATTAATCTCAAGTTCAACCTATGAT</genome_strand>
        <mrna_strand>GGACCTCAACTGAGGCTTTGTTTTTTCCTGACAAAAAAAGGTAGGTAAAATAGTACCAAGTACACAGATGTTGAGACTGCAACACAAAAAATAAGAACGGAATCCCTCTAAACAAAGAGAAAACTGACCAAATGTATTAAATTAATTTGAAGTACATCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593594" ref_strand="+" ref_description="SGN-U593594 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|17367482|sp|O81363|RS4_PRUAR (e_value=1e-13) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=6e-16) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P49398|RS4_ORYSJ (e_value=7e-15) 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4; ">
      <seq>gagcctgttactcggcgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgctttagctcccaagcctagctctggttcacataaatacaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56311" stop="57875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56610" g_stop="56655" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.91"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57706" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="162" r_length="37" r_score="0.838"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U593594" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56610" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCC-GTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGG</genome_strand>
        <mrna_strand>GAGCCTGTTACTCGGCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTA...............................................................................................GCTCCCAAGCCTAGCTCTGGTTCACATAAATACAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593427" ref_strand="+" ref_description="SGN-U593427 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=3e-54) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=2e-54) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P46300|RS4_SOLTU (e_value=2e-55) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>tcactcgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataanacttaccctgctggtttcatggatgttgttactattccaaagannaatganagttnccgacttctttnngacactaagggtcggntccgtctccnctcactcanagatganggaagccaagttcanacttttgtaaggttcgatcagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46360" stop="58631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56616" g_stop="56655" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="299" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="398" r_length="99" r_score="0.878"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58331" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="428" r_length="30" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U593427" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56616" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGA-GGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAAC-TTTGTAAGGTTCGATCAGTGCA</genome_strand>
        <mrna_strand>TCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAANACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGANNAATGANAGTTNCCGACTTCTTTNNGACACTAAGGGTCGGNTCCGTCTCCNCTCACTCANAGATGANGGAAGCCAAG.........................................................................................TTCANACTTTTGTAAGGTTCGATCAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590290" ref_strand="+" ref_description="SGN-U590290 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=1e-43) 40S ribosomal protein S4; (*ATH) AT5G07090.1 (e_value=4e-44) | Symbol: None | 40S ribosomal protein S4 (RPS4B) | chr5:2202384-2204078 FORWARD | Aliases: T28J14.30; (*SWP) sp|P46300|RS4_SOLTU (e_value=1e-44) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>aatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatgggtaagaacagctccattagattgttttttcatttcataatctttagatttttgttctccttatttctgtgctgcttaagtttgttttcttagtgattcatctatacacatggtttcacagttccgaagacaattgttgatcagattgtctacaagttttttcatcaaaaaccattgtctcgtgtcctttttcttctttgttctcttgttgctatgtttgttgaattacttgataaattggtaatgctgttattttgtttgtgtagatgttgttactattccaaagacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42475" stop="58442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56631" g_stop="56655" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="103" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="58142" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="576" r_length="473" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U590290" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56631" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="58142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATG</genome_strand>
        <mrna_strand>AATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAAGTTTGTTTTCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGTTTTTTCATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTACTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579513" ref_strand="-" ref_description="SGN-U579513 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|82400118|gb|ABB72798.1| (e_value=8e-90) 40S; (*ATH) AT5G58420.1 (e_value=3e-90) | Symbol: None | 40S ribosomal protein S4 (RPS4D), ribosomal protein S4, Arabidopsis thaliana, PIR:T48480 | chr5:23636732-23638320 FORWARD | Aliases: MQJ2.1, MQJ2_1; (*SWP) sp|P46300|RS4_SOLTU (e_value=6e-91) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>gctggtttcatggatgttgtactatttccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcattcatttgctttttatgtgatagtgtttttttggtcgcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="57813" stop="59239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57838" g_stop="57850" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="111" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58303" g_stop="58942" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="751" r_length="640" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U579513" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579513" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57838" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTA-TTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTAGT</genome_strand>
        <mrna_strand>GCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTG-TACTATTTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592728" ref_strand="+" ref_description="SGN-U592728 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1173257|sp|P46300|RS4_SOLTU (e_value=1e-18) 40S ribosomal protein S4; (*ATH) AT2G17360.1 (e_value=4e-20) | Symbol: None | 40S ribosomal protein S4 (RPS4A), contains ribosomal protein S4 signature from residues 8 to 22 | chr2:7553567-7555395 FORWARD | Aliases: F5J6.12, F5J6_12; (*SWP) sp|P46300|RS4_SOLTU (e_value=7e-20) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4; ">
      <seq>aagcgaccaaaaaaacactatcacataaaaagcaaatgaatgatcttaaactcagtcaaacctattttcccaacaaaacaatgttaaacggtaccaaatacaaaattgttataattcagaacccaatatgagattgatgtctataatcagagtgaatcttggcccgacctgattaattcatcataagtacaacctagacattttaagcaggtgcaggttgctgagcagtcatcctcttgcgagcctgttcaatgatagataactggatacctttacccttaggtagagacacccatggcttactacccttgccaagagtgaacacattgcccagacgagtagcaaactcgtgccccagggagtcctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="59239" stop="58270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58939" g_stop="58570" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U592728" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58939" e_stop="58570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGACCAAAAAAACACTATCACATAAAAAGCAAATGAATGATCTTAAACTCAGTCAAACCTATTTTCCCAACAAAACAAAGTTAAACGGTACCAAATACAAAATTGCTAAAATTCAACATACAAAATGAGATTGGTATCTCTAAACAGTGAGAATCATGGCCCAACCTGTTAAATTCATCATAAGTCCAACCTAGACATTTTAAGCAGCTGTAGCTGACTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAAT</genome_strand>
        <mrna_strand>AAGCGACCAAAAAAACACTATCACATAAAAAGCAAATGAATGATCTTAAACTCAGTCAAACCTATTTTCCCAACAAAACAATGTTAAACGGTACCAAATACAAAATTGTTATAATTCAGAACCCAATATGAGATTGATGTCTATAATCAGAGTGAATCTTGGCCCGACCTGATTAATTCATCATAAGTACAACCTAGACATTTTAAGCAGGTGCAGGTTGCTGAGCAGTCATCCTCTTGCGAGCCTGTTCAATGATAGATAACTGGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583693" ref_strand="+" ref_description="SGN-U583693 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|30686151|ref|NP_181011.2| (e_value=3e-180) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G34640.1 (e_value=0) | Symbol: None | expressed protein | chr2:14588969-14591736 REVERSE | Aliases: T31E10.2, T31E10_2; ">
      <seq>agcaaaggacaaaggataagaggagttatttatagcaatttcgagttgccaatttcagcaatggcttctgtattgtcaacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgccaactatttgctgcccctatcggaagaccttgtttacaggtactactcctgtttcaatatggaagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggctcttttgagcaggtgtctgtcgagcgttttccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaagctcctggaagtagaagaaagaagtacaaggcatctgcttcctcttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagatagtgtaccagaagagccaaaggatctttcctcagagtatgtcatttatcagcctgaacaagatgaagaagagctgacaggctatgagctggataaaagacatggacggccccacccatttattgatccaaaggtaaagaaggaaatagagaagccgcttactagtgaagaattatggtggaattggagaaagcctgaaaaggagcaatggtctaggtgacagaggcggcgccctgatgttgaaacggtgtttcttaaagctatggcagagacaggacaagtaaagctctatggtgagcatcctacattgacagagactgcgctctatagagcaaggagacatttatataaggaggaaaggctacaggctgaaaaagaaaaaatggaaaagattggtcctattgcatactactcagagtgggtcaaagcttggaaaagagatacttctcgagatgccattcaaaagcattttgaagagactggtgaagatgagaacactcaactcatcgaaatgttctcccatcaaacagatcgtgaataccggataatgatgggaactgatatgcgtattcctcgtgacccgttggccatgagaatgcgggaggatcaaataaaacaaatttggggtggagatccagtttacccgaccattaattacattcaagatcctgatgaagtgattgatttcaggggtccagacttccatgaaccaacaccaaatatgttggcctatttgaaagagcatggcaaaataatatcaagagaggagctagagaaaattctggcgaaagagaagacggaagaaattgaggtggcagaaattgatgaagctatggcaagagctgttgacattggtgaaaatgatgatgaagaagaaggaagtgaggctgaaggtgaagaggaggatgagaaaattacacgcaattggagtgttttgaaaagtaatcccgagcttagcaaatcaaagggtaaacccaaaaagaaagacatgtctctggaggaagctgtagacgattctgaaaatttaacagacttccttatggactttgacgaggatgagtgaggctaatggacgccccaggctatcaaggataagcaaattattttcatccccatcaacaaagctctgttgattacagcaccagcatcttccctatgatggagtcgatgaacatatattggatgattgatacaatctggcaacaaggccaactaacttgggaacggtttgttgttgatgctgctgtgactcttaagcagcatctgctgaagatcttcaccccagaagagtagattttttatagaaagctttgggtattatttttgtggatgtaattggattatcttgtaaagcaaatgaaaaatggagaatgctaatgtagtagcttgtatccagcacacaatgtgaacttttgaagacgcggtaggtatattaaccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70866" stop="62356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70566" g_stop="70473" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="162" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="68795" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="831" r_length="669" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68794" i_stop="68490" i_length="305">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68489" g_stop="68377" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="944" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68376" i_stop="67448" i_length="929">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67447" g_stop="67188" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1204" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67187" i_stop="66810" i_length="378">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66809" g_stop="66688" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1205" r_stop="1326" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66687" i_stop="65357" i_length="1331">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65356" g_stop="65288" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1327" r_stop="1395" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65287" i_stop="64706" i_length="582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64705" g_stop="64652" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1396" r_stop="1449" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64651" i_stop="64499" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64498" g_stop="64397" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1450" r_stop="1551" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64396" i_stop="63571" i_length="826">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63570" g_stop="63448" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1552" r_stop="1674" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="63447" i_stop="63007" i_length="441">
            <donor d_prob="0.263" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63006" g_stop="62656" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1675" r_stop="2025" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U583693" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2025</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70566" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="68795"/>
          <exon e_start="68489" e_stop="68377"/>
          <exon e_start="67447" e_stop="67188"/>
          <exon e_start="66809" e_stop="66688"/>
          <exon e_start="65356" e_stop="65288"/>
          <exon e_start="64705" e_stop="64652"/>
          <exon e_start="64498" e_stop="64397"/>
          <exon e_start="63570" e_stop="63448"/>
          <exon e_start="63006" e_stop="62656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGGACAAAGGATAAGAGGAGTTATTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACGGTCAGTACTGAAAATATATACTGCTAAGTAGAATAAATTGTTTATGTGTGTAATCAGTGTAATTTAATTGTGCTAATCAAGATTGGATGTCAATGCTGCTCATGCTAGTTGCTTGCTCGATGCCACATTGTAAAATAGATAAATGCAAATCTAAAGTGGATAAAATGATATCTTCAGTAGAGACGCGGTGAATATTAATAATACATTTCTAACCACTTTAAACCTCCCTTGGTTCTCGAGCAGATTCAAACTTATATCATCATAACATTCTGACTTAGAGATTATTATTATTTTCCCTGGAACAGGTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAGGTAGAATCAGCAACTTTTTTAATAATGTTGCATCACATGTTCTATTCTTCAAGTTTTAGTCTCTTCCTTTTTCCCTTGCACTGAAATGTTAAAAGATGGACCTCACTCGTTTGGTATTAAACTTATTCATAAGCCCTTCGTCTGTCATGAATGCATGTCATAAACTATAGGCTACAGGGAACCTTGCAAAGAAAGGATAGGCAAACTGAGAGGAAGTATAAAATAAGCAAATTCCATTTCCTTAATGTCTTATTATGTGCTTGTACACTGTTGTATTAGTTCATTCTTGGGAAGCTTATTATGGTACTTATTACAAAGAGTCAAGCAACAAATATTGTGTCTTTTCTTTTTTTCATATTCGTAATGTATATTATAAATAGCATTAACATGAAAAAATTGTCAAACTTCAGTTAGATTGATGATCAACTCCATGTCCTCTCTCTTACCTTTTGCTTTATCTACTGCTTTCAAAAGCTATTGGTTCTGCAAGCTCTCTGGAGCTGGTTTTTGATGAAAAGTTAAGTCTTGACTTCTATTTTGTTTATGTTTATCTTTTACCTGTATTATCTTTATATCCGTGGTGTGGGGGCACTTTGCCTGCATCATAACTATGCTGGTCTACTATCAGCCTACATGCACATGTGGCCTAGGTAATCTTGTCCACTAAGGTTAGAATGAAGGGGATTACACCAAGTGTGTGGTTAGGATTTGTACTTGGGATCTTCAGGTTGTTACTCCCATGCCTTAACTATTAGGTCATTGCCTTGGAGACCCGTTCTGATTTTATTTTCTGAAACTTGTCCCTTGTATTGTTCCCTAATTGACAGATCTTTGAGTTGCTAAATGACTTGGCAATCTACTTTCCCCGTTCAAGATGAACCAGAATACACTTTCTATTGGAACTAAGAACTAATAAGTGGGCAATGCAGGCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAAGTATCTCCCTTCCCTCTGGCTGAACTATACTTCATAACTTTTCCTGCTTTTTCTTGTGACTTGTGAGTATCTGTGTACGCAGCTGGTTTAGAAGTGAAGGTGATTGGAAGTTGGGGGACAATGATTTATTATCGGGTAGTTATAGGGATCTTTAGCTTGATTATTTCAGGAAATTGCCATCAAAAGTATTTTCAAATTATTTTTTTGAACAAAAATATCTAAACATAGCCTGAAGTAATTGAGGTAAAAAAAGTGCCTGTCTCTTTATCCTGTCAGAATGATTGGAAATTATAAGTGATTTGTTCTGATTTATTCGGTTTTCTTTTTCTATTTTGACTGGAAATCAACAATTTGCTTTTTCCTTTTCTTTTTGTGCAGTTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCTGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAGGTTTGGTTAAGCAACTTGCTATTCAATACCCTACATGGTTTTTCTGCCTAGTTAACTTTGTTGACCTTATTTCTGACCTCGTTTTCACATATGCACTTCAAATTAATTGCCAAGTGCTAGTACATGCACTGTTTATTATCAAAAGCTACAGAATTAGTGATGTATTTCATGTTTAAGCAAATGGAAATGGAGATACTGTGCTAAATTCTGTTTATGCTCTTTGCCTCCATATGAGATGTTGCATTATTTACTTTGTAGAGATACTGAGGCTCAATCTCTTAACTAGATGAATAGATATTAACTAATGTTTCCAGTAAACTTGATGGTTATCCTAAACCAATCAATCAATGTGATCTATCATGAATACAATGGAAGCAAAGGATCTATCTATGTAGGCTATACTTTCTTGTTGATATTAGGCAGTCGTTGTTGTTGTGCCACTTACATGACATCCAATGCTTATTATAATGAGAGATTTATAAATCCTTTAGAGCTAAGAATGAGAAATAGGCTGGTATTAGAGAACCCTTAAAATTGTGTTAAAAGATGAGGCAATGGATGCAGATAGAGTGGAATAGATGCAAATGAATTTATAAATGATGACGTTTTTCAGGCCATTTTGTGTGCGCATCAACTAATTCACGAGCAGACTGCTACAACCACCAAGTTTGGGGCAGATGGGCCCACACTGAATGTTGTAGTTAGAATCTTGAAGTTTTTATTTCTATCTGTCAACTGCTAAGTCATCGCCTCGGGGACATATAGAAGATCCATTCAGCTGATTCCAACTAATTTGGTATCAAGGCTTAGTTGATTAATTCAGACTTGAGGGATATGCAATTTGTCAAATTGTTATGGGCAAACAACTAGGTGTATATAGCTAATGAGGAATATGAACAAAATCTCTTCTAAATGTGTTATTTTTACTTTTGGAGATCAGGAAAGTTTTAAATTAGGTAAAAGGTCTAGTAGATTATGAAGATGAAGGGAAGTCAAAGAGAATTGAGATGGAAGTTCCAGTAAGTCAAGCCAAATTTTGCTGATAGGTCCACTTGATGAAGATTTGACTTTACTGAGCTTTGTGAATGTGATGAATCTAATCAAAAGGATTCTAGATCAGGTTTGGTGATTGGAGAAGATAACTGTTTGTATGGTAAATATGTTGTAGCATACTTCTTTAGCTGTCATGTTAACTCAAGAAACAAAAGGCTACAAGTATAGTTGTTATCGGCTGTGTATAGAGTTGATATACCTGTTTTAGTGATTATGTTTTATCAGCCTATCTTTTACTAATTTATGTTCGGGGTTTTATCGGAACATTTTGTTATCAGCATGGCAAAATTATATCAAGAGAGGAGCTAGAGAAAATTCTGGCGAAAGAGAAGACGGAAGAAATTGAGGTAATAAATTTTCATAGGTATTTATAATACTTCGTTTCATTCTCTGAGTTTTGTGTAAAAAGTACTATTCCTTGCAGTTGCATTTGTTGTTTTATTGCATTGCTGCTAACAAATTGTTATACATGTAAAAGCTTCAATTGAATAGTTTATCTATTTGTTATTTATAGAATTTACTTTTTAAGGAAAGAGAAATGATGATGCAAATGATGTTGAAGCAGTGTTAAAATTCATAGATTCTCTTTAAGGATAGGAAGGGATACACTCTCTGGGTTGACTGTAAATACTTTTAATTGCACCTTCTTGGTGTGATATCTTATAATACACTTACCTCTCTTGAAAAAAATTACTTTTTAAGGTGTACAAGCAAAACTACTCTAGATCCCAGGCACAAATATGTTGCAGTTAGCTTGCACATAAAATTGAAAAAATTAACTCTAGCAAACTGTTGTCTACTTCATTCTTCAATCTTTTCTTATGCATCAAATAATATTGCAATCATCAACAATCAGATTGCTTAACATTAGTACCCTGTCTCCTTTTCTTTGAATCTGTTCAGTAAAAGTACTTTCTTCTCTGCAACAGGTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGATGTGAGATCATTCTTATTCTTACTTTGTTCTAGTTTTGGTGTTTGATGAACTTTGTTTTGCTTCATCCTGAACTTCTAAATTTTCTAATTTGCTATGTTGGCCTTGTATGTTAATCATTAGTTTTATGTCAAGTAACTCCTCTTGGTGGTTCAGGATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAGGTAATTTCCTTTCTACTGATCATTGATTTATTGGTTTCCTTTCTGATCTTATGGCTCAATTTGTTAAATCAATTGAAAGGATGATTGATTTAGTGATTTTGTTATATACTGCTATGCTATATATTTGGCTAACAATCTGGTTTTTCTTGATGTCTATACTTGCCTAAAAGTCTAAAACTGCTGTTTTTCGGTTCTATCTGTCCTTTGCTACATGGTTTGTAGTAGGGGTGGCGAAATCAGCCCAAATAACCATGACCCGCCCAATCCATATATGTTTGGTGGATTAATGACCTGTTAATTTGATTAGCTGGGCCCATTATGACTTACTTAGTTCAGCCTATTTTAAAACTGGGGTAATATGCAGCATGAGACATATCGTCTAAATATAAAATAACTTTTTTTTTATTTTATATGTTTTTTATAGTCATAATAAGAAAATTTTATCAAGTACCCGAACAAATTATAAGAAACAAACTTTGAATTTAAAACTTAGTAAGCATTGAGCAGGTTGGTTCATAACCCGATTTTTAGTGCATTTCAGCCCAAACAACATTTAAGCGGGTCAATGGCCCGCCCATTTATTAACTCAACCCATTTTAACATTCTCAAACTCAGCCCAACCCGCCCATTTGACCCCTCTAGTTTGTAGCAAATTATTCCTCTTAAGGAAATTTCCTCTGTGCGTGGAGATAATGGAATACAAATTTTATACAATAGGATGCACTTCATGACCTTGCAGGGTAAACCCAAAAAGAAAGACATGTCTTCTTCTTAATGTAATTTTTATTTGGAGTTTCACAACAGCATGCACTTCATGACCTTGCAGGGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGACGCCCCAGGCTATCAAGGTGAGCTCCTTCGTCTGGAAAATGGAAACAGAGGTGCTTGACATAAACTTCTTTAGGTGAAATGAATCTATGTTCTGTGCACGTACTGTACATACATTTAAATAACCTTTGTTTCGACGTGATGAGGCATCACACAGAAAAATCATTGTGAAACCCCATAACTTGTAATGCAACTTTGCAATAAGAACACCCCTTGAACTCTGTGCTTTCACACAATCTTGTGATTTGACCTGATTATTGGCCATTCATACCATCTAAATCAACAAAAATAAGTTTGTAAGCCAAAAGAAATTCCATGTTGATGCATCACTACATGGGCGAATTATGATCATATATATACCTGACTACGCAAGAGACCCTCTGGTGCATGTTCTCGTTACTTTTTTGCAAGATGGTCCAAGTTGTTTCATCAATGATAGAGAATTTGTTTCTACCTTGCAGGATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAGCACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACGATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTTTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACGCGGTTGGTATACTAACCAGA</genome_strand>
        <mrna_strand>AGCAAAGGACAAAGGATAAGAGGAGTTATTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTGGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGACAGAGGCGGCGCCCTGATGTTGAAACG.................................................................................................................................................................................................................................................................................................................GTGTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAA..........................................................................................................................................................................................................................................................................................................................................................................................TTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCTGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCAAAATAATATCAAGAGAGGAGCTAGAGAAAATTCTGGCGAAAGAGAAGACGGAAGAAATTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGAT.........................................................................................................................................................GATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGACGCCCCAGGCTATCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAGCACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACAATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTTTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACGCGGTAGGTATATTAACCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586853" ref_strand="+" ref_description="SGN-U586853 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgccaactatttgctgcccctatcggaaggtgtttttagattattatgaactccaacaaatcttattatgtttgttaatcaccactggaagtagaatcttatactctgtgttgttagataataagtaaaaaggagcacttttacaaaattgttcgtctctaagagttcaaattgttgattttaggtttatatgtgactttttgtatcttcgagaggaatcaatggtttgggtgagctataagagtctagaagagattaaaatggtttatataatcaattctattcaagagagggatatttttgggagtttgatatatgcttgaggatatggttaacgtattctagagtgttagagctgacgatcagggaaagctgtttgaaggaaatgttttacttcaatggcaaagagagtttggttagattttaggagttatttgtagtttcatggtagtaaattgttttctgattttgatatgcatcaaatttcctttatacaattaatctgtgtgctcatcttatagctgactctctttcttatccctccacatgtacaccaagtttacctgcctatgtttacttcttcatttgctgaactgtgtatacgtatgcatctgcattgaacaccagcacatgttgctctctgtgacggtgaaattcatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70692" stop="69381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70483" g_stop="70473" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="69681" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="713" r_length="702" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U586853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70483" e_stop="70473"/>
          <exon e_start="70382" e_stop="69681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTG</genome_strand>
        <mrna_strand>CTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570496" ref_strand="+" ref_description="SGN-U570496 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157350387|emb|CAO40367.1| (e_value=0) unnamed; (*ATH) AT4G21060.1 (e_value=0) | Symbol: None | galactosyltransferase family protein, contains Pfam profile: PF01762 galactosyltransferase | chr4:11240741-11244871 FORWARD | Aliases: T13K14.220, T13K14_220; (*SWP) sp|Q7JK26|B3GT1_PANTR (e_value=7e-24) Beta-1,3-galactosyltransferase 1 OS=Pan troglodytes GN=B3GALT1; ">
      <seq>cttggactctaggctcgaaagcttgggaagaattggataaatatgaggagaaagggattgagatgaattccatacttgagggaaagcctgaatcatgtccttcatgggtttctagtagtggagcacaaattgctaaaacagatcatatgatgttcctaccttgtgggcttgcagcaggttcttctataacacttattggtactcctcgttatgctcatcatgagtatgtaccacagcttgccaaaataagggctgctgatgcattagttttggtttcccaatttatgattgaattacaaggtttaaaatctgtggttggtgaggatccaccaaagattttgcatctgaatcctagaataagaggagattggagccgtcgaccagtgatcgaacacaatacttgctatagaatgcaatggggaacagctcacaggtgtgatggtttgccttcaaagtatgatgatgacatgcttgttgatggatatttgagatgtgagaagtggatgcggaatgacattgttgatactcgagagtcgaaaatattttcatggtttgatcgattcattggacgtgcaaagaagccagaggtgacctggcctttcccatttgtggagggtaggatgtttgttctaactattcgtgctggtattgatggctaccatatcaatgttggtgggcggcatgtgacttcatttccatatcgaactggcttcacactggaagatgctacagggttggcaatcagaggtgacgtagatatacattcggtttatgctacatctcttccaacctctcatccaagtttttctccccaaagagtgttggatttctcagagaagtggaaatctcttcctttacccaagaatcgcattcaacttttcattggggtgctttctgccaccaatcactttgctgagcgtatggcaatcaggaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagctaaatgctatattgaagaaggaagcagattactttggggacattgtgattgtcccctttatcgatagatacgagctagtggttcttaaaactattgccatctgcaagtatggggttcagaatgtgacagctgcatatatcatgaaatgtgacgatgatactttcattaggatagatgcagtccttagagaaattcaacgtgtccctcctagacgatctctttacatgggcaatcttaatctcttgcatagaccacttcgaacaggaaagtgggcagtaacttttgaggagtggccagaagatgtataccccccttatgctaatggaccaggatatataattacaagtgatattgccaaacatatcacttctcaatatcggaaccaaagcttgcggatcttcaaaatggaggatgtgagcatgggtatgtgggttgagagttacaacagttcaactcctgtacactactctcacaactggaagttctgtcaatatgggtgtatggaagactatttcacggctcattatcagtctccacgacagatgttctgtctgtggaacaatttactcaagggtaaggcccattgctgcaacttctagagtgatatgaccatttttcgctgcttgatggacgcacaatttgaattgcatcatcttcttcctgccttgagatcttacgcgaagaatgaaggtgtgtgttggtgtatctgttcagatggctgttttagcttaacatatgatttaacatggaacattggccatcgcgatggatttgtacatccggatttatatactgtgtactagtcattgtataggattcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="79346" stop="71632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79046" g_stop="78573" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78572" i_stop="75757" i_length="2816">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75756" g_stop="75524" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="707" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75063" g_stop="74773" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="998" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73066" g_stop="72938" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="999" r_stop="1127" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72842" g_stop="72669" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1128" r_stop="1301" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72668" i_stop="72564" i_length="105">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72563" g_stop="72456" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1302" r_stop="1409" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72455" i_stop="72362" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72361" g_stop="71932" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1410" r_stop="1838" r_length="429" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U570496" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1839</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79046" e_stop="78573"/>
          <exon e_start="75756" e_stop="75524"/>
          <exon e_start="75063" e_stop="74773"/>
          <exon e_start="73066" e_stop="72938"/>
          <exon e_start="72842" e_stop="72669"/>
          <exon e_start="72563" e_stop="72456"/>
          <exon e_start="72361" e_stop="71932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGACTCTAGGCTCGAAAGCTTGGGAAGAATTGGATAAATATGAGGAGAAAGGGATTGAGATGAATTCCATACTTGAGGGAAAGCCTGAATCATGTCCTTCATGGGTTTCTAGTAGTGGAGCACAAATTGCTAAAACAGATCATATGATGTTCCTACCTTGTGGGCTTGCAGCAGGTTCTTCTATAACACTTATTGGTACTCCTCGTTATGCTCATCATGAGTATGTACCACAGCTTGCCAAAATAAGGGCTGCTGATGCATTAGTCTTGGTTTCCCAATTTATGATTGAATTACAAGGTTTAAAATCTGTGGTTGGTGAGGATCCACCAAAGATTTTGCATCTGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTGGTAAGACACTTTCTGTTTTTTTCTTGTCTGATTTGGTCTCTCTGTTTTATAAGCTATTCCTTTGTGGGAATTTTGTGGGTTTGGGTAGGGGGTAATGAAACAATAAAGGGAAATGATGTTTTTGATAATGAAGAGAATTCTAGGATATATAGGTGAAGTTCTTTGACAATCAATGTGCTTAAAGTTGGCTTAAAAAATCACACACAACTATCTGGAAAAGTGAAATTGTCGCTTTGTTTTTTACTTTGTAAAATCTCTTGAAAACTGAACAACTTAGAGAAGAAGAAACAAAGAAAATATGGAGCACTAATGAATTCTATCACAAACAATATAGGAAACAATGATCCTTGATAGATCCAATAAATGGCGAAGAAATAGGAAAGGAAATCTATTTTGAAACACCCATTCACCAAGCAATGCAATCAAAGGTATTGAACCCCAAGTGGAAGAGTAAAACCCTATTAGACTTATCAGACCAAGAAAATAAAGTATTGTCAAAACATAGAGAATTATCCACTTCATGGCAGCCATTGGTGTTCGTGTTCCTCAAGAACATAGTGGTACATCCTACCTCACAAGCATAATGCTCTTCAAAATATCATCAGTCTCTATTTCTTTTTTGATCAAGTAAGTTGTATTATAAATGGCATCAAGTGTATGTATGTGACTTATAGCTTACCTCTGTCTCTATTTCGAAGATGCCTATGTGCTACTTATAGCTTAGGTCCCCCAGATATGCAAGCCCATTCAAAATATACATGGAATTATCCTTAAACTAAGAAGGAGTAAGAATTTGATGGACTGGGGCGTGGGCGGTTGCACAAACTAGTTGTGTAGTTACAAACTAGGCTAAAGCTTGATCCAGTGGGTTTCCAGATTGGGACTTAGGTGTGTGTGGCTGGTAATAGCATGTGTAGTTGCACAACCTTAAGAAATTTTCCATCTTGTATTGGCCTTAATGTTTCCCATCACGGCCATGTCATGTGATCACACTTACTCCTGAAATGATTCACCCTTCAATTCTACTAAGTCGGACCTTAACCTTCAGTTAGAATTTCCCATATCTTCCAATGTTCTGTTGGTACAATGTCTGTTGCGACCATATCCTGGCGTTAAAGAAACCACCTCATGCATATACTTAACAAACAAACATGGTGCTTTGGATATTAGCACCCTACTGCTAATTGATGGTGGCTCTTAAGTGTACTGTATTCTGGGAGAAGCTGGGGAAATCAGTGAGAAAATTTTGTAGGTTGTGTGGCATCCTTGGTGGAAGGATGTTGGAGAGAGCAAGTTGAAAGGGTGGTTTAAGGAGGACAAGAGCGATGTGGTGGTTCTCTTGTGGGTCTGTGTTTGTATTGTCCCAAAAATGGTGAATGGAGGATTGAAGAAGTGTGGGGAAAGGGTGAGAATGTGGGACCCACAGAATTTTGAAAAACAAAAAAGAATTAAAACGCAGTACTTTAAAGGTTATTGCACTCAAATTTGGGTGAAACACAAAACTTTTGCCATGTCAACGTCAGGTGTGCACGAGACACAACAATGTCTAGTTGGTCATGTATTTTGCCCTAAAAATAACCTTATCGTTCAAAATCATACCACTCAAATAAGGATCAAAAGTCACTTCGTCGTGAGTTTTCTTGGGTTAAACGTGTCATGTTTTTGAGAAAGGTAACATATTTGTATATTGATGTATAGACTACACAAAATCTGTATAACCATCCATAATTACTGAGAAAATTCACAAAATACAGATAGGAATCTAAAACATCAAAAATCAATTTATGATCTTCTAAGCATACTCCTTTACACCAAAAATAAAAAGGACTAAACACTTCATTTTTATCTTCTGGATGTGACAAACTTTATCTTCATAGTATCTGGTTTCTCCCTTCCCAAATTGTCCACCACATATGCAAGCTGGAAACATCTGTACCTTCCAAAGGCAGCGGTACGATCTGCGTACACACTACCTTCCGCAGACCCCACTTGTGTGATTACACGGGGTATGTTGTTGTTTTTATGCAAGCTGGGACAACCATTCATCTCTCTTTATGTATTGAGTTAATACCTTCTCTGTTCCCGAATGCTAGAACATCCACTATGTTCCTTGGCATACTCCCCATCCCTTAGGTTGATGAATATCCTCGTATTTGTATAATCAATTTACAGTGCAAACTGAGATGACCGATAGAGGTCTCATTATGATCAAGAAGACTACTAAAGGAGTTATATTGAGGCGGTGCTGGGATAAATATAGTAATTAGCTATAACACTTGATCCTCCTTCTAAAACAATGGATTATCCTACACTTTGAAGCTCTTGTCAACAGATGGATAGTGTTGTTTGGAATTAACTCCATTTTCCTCAAGGAATACATCATTGTTACCTTGTAGCAAAGAAGAATTAACTCTAAAACAAGAAAGAGTGAGTTGGTTAGAGTATAAACAAGGACTCTTTTCACAAACATTGTTTTTCATACTTGACTCTCCTTTTCTTTTGATTGTTGTCACTCTCATTTTGAAGGATTTTGTGATAGACTGATAGTCCTCTCTTTACTTATCTCTTCCTCACCTTTCCCATTCTAGTATTATCACTTAGCTCTTGTCAAATTTGTTTTTCATTTATATCTAAACTGATGGTTTTCACTTAATTATGTGTAGTTCCATTGTAGAGTGATAATAAACCTCTTTTACAACTTATTCAAACTTTTTTTTTGATAAGCCTTGTGCCTAAGAAGTTTTACTTGTGGGATTCTTGATTAACAGCTTTATATAAACCAAATACCATAAAATTTTGAATTTACTTTCATGCAGTTGATGGATATTTGAGATGTGAGAAGTGGATGCGGAATGACATTGTTGATACTCGAGAGTCGAAAATATTCTCATGGTTTGATCGATTCATTGGACGTGCAAAGAAGCCAGAGGTGACATGGCCTTTCCCATTTGTGGAGGGTAGGATGTTTGTTCTAACTATTCGTGCTGGTATTGATGGCTACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACTGTAAGCTGCTTGATCTCTTCCAAATAATTTTGATTGTTTTCTCTGTAGACATGCAAGTGTTCTGCTTTTCCCATGACTGAGCAAGTAACTATTGTAGGAGAGTGTTTTTAAGATGTTCTTCTTGGAATTGATTTTAGAGTAAGCACATTTTAGACTGCTGTGCCAGGCAATCACTATTCAACCACTGGAATACATTTTTCTCAAAAAAAGGCACATTGGAAATCAAGCTACTATTCAGATCTTTTGCCCACACAAATATTACCAAACAAAAAAAAAATGGATAACATAAAATGTTATCGTAGTGTTTTATCCCTTTTCTGAACCCCTTCACCAGATTCACGGATTTGTAATTGTTGCAATTAATATGATCACCAGATTTTCCGGAATTAATGTTTCAGTTTCCTCACATTTGTTATTTCCATACTAGTAAGCCATAGTCAGATGTTCTCTATTCTATCAGGGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGGGTGAGTTCTGCACTTCGCTCCATCTTCCTCTACTTCTCTAGACTGCTCAGTTGTGTCCTAATTTCTATCGACATGGCCCACAATATCTGTTGCAGGTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAGGTACAGAGATTTATATGATAATAGAGTTATTCAAAATCATGGCTACTGTTTGTTGATTTCTTATAGACACTAAAGCTAATTTGAAAATATTGACTTGTGCAACAGGAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGGGTTTGTAACAGTTTATTTCTTTCGTTTTCTTCTTAATCATAAACCTGTTCAAAGTGTAGACTCTGAAATACGCATTCCCCCATCAAATTGACAGATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACAGTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAGAAATGAAGGTGTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCC</genome_strand>
        <mrna_strand>CTTGGACTCTAGGCTCGAAAGCTTGGGAAGAATTGGATAAATATGAGGAGAAAGGGATTGAGATGAATTCCATACTTGAGGGAAAGCCTGAATCATGTCCTTCATGGGTTTCTAGTAGTGGAGCACAAATTGCTAAAACAGATCATATGATGTTCCTACCTTGTGGGCTTGCAGCAGGTTCTTCTATAACACTTATTGGTACTCCTCGTTATGCTCATCATGAGTATGTACCACAGCTTGCCAAAATAAGGGCTGCTGATGCATTAGTTTTGGTTTCCCAATTTATGATTGAATTACAAGGTTTAAAATCTGTGGTTGGTGAGGATCCACCAAAGATTTTGCATCTGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGATATTTGAGATGTGAGAAGTGGATGCGGAATGACATTGTTGATACTCGAGAGTCGAAAATATTTTCATGGTTTGATCGATTCATTGGACGTGCAAAGAAGCCAGAGGTGACCTGGCCTTTCCCATTTGTGGAGGGTAGGATGTTTGTTCTAACTATTCGTGCTGGTATTGATGGCTACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG...............................................................................................GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAG.........................................................................................................GAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGG..............................................................................................ATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACACTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAG-AATGAAGGTGTGTGTTGGTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567846" ref_strand="+" ref_description="SGN-U567846 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>tcttctctctgtcaactgctgcttcatcgtgtatccaaaatctacgttactagggtttttctccctatccctcctacctaaagattggggttttccccccccagccatttgtagggcattctgcagctttggttttgccaatttcttcaggatttccaagggatatggtgcaatgctgggcaatttgaggtcaggtaacaggtaacttgtttgatcgatcattagctaggtgggtttcggctctcagtgttgtatttatgatttgttgtgtttacccattgagagcttggtgttgctgacattgggtcttaagattttgatgttgttgtggttaccagagacgatgaagtggtgggggttataggggttgttttctgtgctgattagtttgggatatatatataatgatgaaaaggttgaaaaatgaagcttccagtgtgaggaggtttaaattgtcttatgttttactgggtttagctgcattttacttggttcttatctgtgtgaagtttccggagtttcttgagagcgcgacagttttgagtggtgatgatgctgatgtagctctagatgtggaggatgatagtggagaatccatttctgtgtttcataatagtgtaagggaatattctcaagtgaaatcacaagaagaggataatgaagatgaancttctccccataaaaagcctcctaagcttcactatggtcgaattactgcagctattttgaaaaggnananntggagcgaaatctgtctattttggnnagtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="80129" stop="78756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79829" g_stop="79056" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U567846" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79829" e_stop="79056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCTGTCAACTGCTGCTTCATCGTGTATCCAAAATCTACGTTACTAGGGTTTTTCTCCCTATCCCTCCTACCTAAAGATTGGGGTTTTCCCCCCCCAGCCATTTGTAGGGCATTCTGCAGCTTTGGTTTTGCCAATTTCTTCAGGATTTCCAAGGGATATGGTGCAATGCTGGGCAATTTGAGGTCAGGTAACAGGTAACTTGTTTGATCGATCATTAGCTAGGTGGGTTTCGGCTCTCAGTGTTGTATTTATGATTTGTTGTGTTTACCCATTGAGAGCTTGGTGTTGCTGACATTGGGTCTTAAGATTTTGATGTTGTTGTGGTTACCAGAGACGATGAAGTGGTGGGGGTTATAGGGGTTGTTTTCTGTGCTGATTAGTTTGGGATATATATATAATGATGAAAAGGTTGAAAAATGAAGCTTCCAGTGTGAGGAGGTTTAAATTGTCTTATGTTTTACTGGGTTTAGCTGCATTTTACTTGGTTCTTATCTGTGTGAAGTTTCCGGAGTTTCTTGAGAGCGCGACAGTTTTGAGTGGTGATGATGCTGATGTAGCTCTAGATGTGGAGGATGATAGTGGAGAATCCATTTCTGTGTTTCATAATAGTGTAAGGGAATATTCTCAAGTGAAATCACAAGAAGAGGATAATGAAGATGAAGCTTCTCCCCATAAAAAGCCTCCTAAGCTTCACTATGGTCGAATTACTGCAGCTATTTTGAAAAGGCAGAATATGGAGCGAAATCTGTCTATTTTGGATAGTATGG</genome_strand>
        <mrna_strand>TCTTCTCTCTGTCAACTGCTGCTTCATCGTGTATCCAAAATCTACGTTACTAGGGTTTTTCTCCCTATCCCTCCTACCTAAAGATTGGGGTTTTCCCCCCCCAGCCATTTGTAGGGCATTCTGCAGCTTTGGTTTTGCCAATTTCTTCAGGATTTCCAAGGGATATGGTGCAATGCTGGGCAATTTGAGGTCAGGTAACAGGTAACTTGTTTGATCGATCATTAGCTAGGTGGGTTTCGGCTCTCAGTGTTGTATTTATGATTTGTTGTGTTTACCCATTGAGAGCTTGGTGTTGCTGACATTGGGTCTTAAGATTTTGATGTTGTTGTGGTTACCAGAGACGATGAAGTGGTGGGGGTTATAGGGGTTGTTTTCTGTGCTGATTAGTTTGGGATATATATATAATGATGAAAAGGTTGAAAAATGAAGCTTCCAGTGTGAGGAGGTTTAAATTGTCTTATGTTTTACTGGGTTTAGCTGCATTTTACTTGGTTCTTATCTGTGTGAAGTTTCCGGAGTTTCTTGAGAGCGCGACAGTTTTGAGTGGTGATGATGCTGATGTAGCTCTAGATGTGGAGGATGATAGTGGAGAATCCATTTCTGTGTTTCATAATAGTGTAAGGGAATATTCTCAAGTGAAATCACAAGAAGAGGATAATGAAGATGAANCTTCTCCCCATAAAAAGCCTCCTAAGCTTCACTATGGTCGAATTACTGCAGCTATTTTGAAAAGGNA-NANNTGGAGCGAAATCTGTCTATTTTGGNNAGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599863" ref_strand="+" ref_description="SGN-U599863 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agtactttagtacataatattaattcatgaacattattataagcagtacatcaaacggaatggtttaaaaaaaaagagcaattaaaagaaaacaaatgtttattcagtaaggtatataataaattaggaataagcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="84299" stop="85039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84599" g_stop="84739" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-U599863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>141</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84599" e_stop="84739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTTTAGTACATAATATTAATTCATGAACATTATTATAAGCAGTACATCAAACGGAATGGTTTAAAAAAAAAGAGCAATTAAAAGAAAACAAATGTTTATTCAGTAAGGTATATAATAAATTAGGAATAAGCATCATT</genome_strand>
        <mrna_strand>AGTACTTTAGTACATAATATTAATTCATGAACATTATTATAAGCAGTACATCAAACGGAATGGTTTAAAAAAAAAGAGCAATTAAAAGAAAACAAATGTTTATTCAGTAAGGTATATAATAAATTAGGAATAAGCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586604" ref_strand="+" ref_description="SGN-U586604 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147765651|emb|CAN64742.1| (e_value=1e-33) hypothetical; (*ATH) AT2G34530.1 (e_value=2e-32) | Symbol: None | expressed protein | chr2:14556057-14557324 REVERSE | Aliases: T31E10.13, T31E10_13; ">
      <seq>ggtcacacaatttatagcaaatatgatcaacgatcattttctaatgagtttaatacaacaaacatcagatttcattgatttagtgaaaacaaaatcaatcgaagtcgtggcacaacacgatgaacgtttattaataacaattttaatgttattatttgtgtgttatatattaatatttttttcaggtcgtttatggaagaagagaaaaaataaaaaattgaaaaaagtattaacaagatcaatgtcaattggacttttacatggaggtgaattggctctaaaaaggttaattgattatcataaagctaaggctgattttatatcattgaattcagctgagacagatcttgatgctttgctcaatgaggagcaaccccatttcaagaaactacaaaggtgtattgcaaagatggaaatgagtggaaaagaaagccaagcaatgaggaaattagagaatgcaataaaaaatgctgaaccacataaagcttatgagtttgaaatgcaacttgtggaaacacttatttaccagggagaatacaataacgccctacgttgcaaatgtttagacgaaaaattaattaccgatgcaaggcgtccactttataaggctataatatacatctcactcgggagccgtagaaatgaagaagaagccataaattactggaaagaattcagacaaattaaagaagattttaaagaccaggcaaagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="87485" stop="84588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87186" g_stop="86793" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86792" i_stop="85977" i_length="816">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85976" g_stop="85842" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="529" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85841" i_stop="85732" i_length="110">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85731" g_stop="85654" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="607" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85653" i_stop="84998" i_length="656">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84997" g_stop="84888" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="716" r_length="109" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-U586604" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87186" e_stop="86793"/>
          <exon e_start="85976" e_stop="85842"/>
          <exon e_start="85731" e_stop="85654"/>
          <exon e_start="84997" e_stop="84888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACACAATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACAAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATTATCATAAAGCTAAGGCTGATTTTATATCATTGAATTCAGCTGAGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAAGTAAGTAATACGTGTTGTTTTTTTTTTTGTTATTTTCGAAAAAAATATATCGTTATATTTATTTTTTTACTATCAGAAAGAGGTTTTGTTTTACTTTTTTTTTTTGATATATTTGCTCTTATTCTCTAACTTTAAACACATATTTACTTTAGATGGTTAACTCTCATTTCTCCGCCCTTATTATTTTATGTTGCACCTATATGACACTTGTATGAATATATTATAAAACATGATAACTTGATGTTATTTGATATAAAATATGTAGTTATATTTGTTTTTATACTATCAAAAAAGGGGTTTCGTTTTACTTTTTTTTATATATATTTGCTCCTATCCTCTAACTTTAGACACATATTTACGTCAAATGGTTAACTCTCATTTCTCCGCCCTTATTATTTTATGTCGCACCTATGTGACACTTGTATGAATATATTTTAAAACATGATAAGTTGATATTATTTGATATAAAATATGTAGTTATATTTGTTTTTATACTATCAAAAAAGGGTTTCGTTTTACTTTTTTTATATATATATATATATATTTGCTCTTATCCTCTAGCTTTAGACACATATTTACTTTAGATGGTTAACTCTCATTTCTCCGCTCTTATTATTTTATATCGCACCTATATGACACTTGTATGAATATATTTTTAAAACATGATAAATTGATATTATTTGATATAAAATATGGGTCATGCATGAATCATGACCCCTATAATTTTTTTTTATTTATCTACGAAAGATCTTCATTTTTTATGCGTAAAAAAAAAAACAGAAAAAACTATTTTCTTGTGTTTTATGTGTTTAATAGAGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAGTGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAAACACTTATTTACCAGGTTAAATTATTTCATTTATTAATAATTTTCACTTTAAGGTTGATTTAAATTTAATTAAACTCTTCATTTTATTGTATAGTACTAACTTTGGTTGTCATTATTTTTCTTAGGGAGAATACAATAACGCCCTACGTTGCAAATGTTTAGACGAAAAATTAATTACCGATGCAAGGCGTCCACTTTATAAGGTAACTTTATTCTTTATATATCAGTAGGGCCAGTCAATGAGCCAATAAAATTTAATTAAAAAAATATAATGTAATATTAAAATATAAAATTGATGAGAGCCAAATTCAAAACAATTAAGTTATATTTTTATTTAAATATTTATACTTAAAAAATACTTAAATAGTTTTTTTTTTCCAAAAAAATAGTAACTTAACTTAATAAATATTTTATAAAGACAATTTTATTTGTGAATTTGATTAACAAGTAGTAACATCAACTTCATGTAATATTGTTTTGTCGATATTTATGATAATATATTTAAATTATAATTAATAATTTAAAAATTAATAATTAAAAGATATATATAATTTTTTAAAAAGTGGGCTGGCCCGGCAAGTCTGTAGTCCACGTACTTGTGGATTGGACCGATCATTTTCCGGCCTACACCAAAAATGGGCTAGCCCAACCTGACCCGTAAAATGTCAAAGCTTATATCGATTAGCTCGGAGGGAGTGAGCTAGCCCATATTGACAGCTCTACGTAGAATACACTTACAACACACGAGTTACTTATTATACATTAACTTAAGGTTCATTACGAATTTACAGTAAATCATAAACTTCAAATTATGGTCATTAATCCGGCTCATTTTGAGATTGTTCTTTATTCTTTTCAGGCTATAATATACATCTCACTTGGGAGCCGTAGAAATGAAGAAGAAGCCGTAAATTACTGGAAAGAATTCAGACAAATTAAAGAAGATTTTAAAAGACCAGGCAAAGTAAA</genome_strand>
        <mrna_strand>GGTCACACAATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACAAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATTATCATAAAGCTAAGGCTGATTTTATATCATTGAATTCAGCTGAGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAATGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAAACACTTATTTACCAG..............................................................................................................GGAGAATACAATAACGCCCTACGTTGCAAATGTTTAGACGAAAAATTAATTACCGATGCAAGGCGTCCACTTTATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATAATATACATCTCACTCGGGAGCCGTAGAAATGAAGAAGAAGCCATAAATTACTGGAAAGAATTCAGACAAATTAAAGAAGATTTT-AAAGACCAGGCAAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="22157" PGL_stop="5981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22157" e_stop="21904"/>
            <exon e_start="19948" e_stop="19802"/>
            <exon e_start="17766" e_stop="17688"/>
            <exon e_start="6332" e_stop="5981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="22157" e_stop="21904" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21903" i_stop="19949" i_length="1955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19948" e_stop="19802" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19801" i_stop="17767" i_length="2035"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17766" e_stop="17688" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17687" i_stop="6333" i_length="11355"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="6332" e_stop="5981" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22157" stop="21904"/>
              <exon start="19948" stop="19802"/>
              <exon start="17766" stop="17688"/>
              <exon start="6332" stop="5981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA : GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG : TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG : CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTAGC</gDNA_template>
            <first_frame> T  E  S  Q  L  K  N  P  F  S  R  G  *  H  F  P  V  W  V  V  Q  T  *  L  L  *  I  R  E  A  M  E  G  G  E  E  I  E  I  A  E  E  N  E  F  P  S  V  I  G  R  K  Y  S  P  V  V  A  H  D  N  D  S  A  V  I  E  M  S  S  V  R  P  G  S  S  S  S  L  P  N  H  D  L  K :   N  V  K  V  G  V  H  P  N  M  A  S  E  E  R  D  E  S  L  S  N  H  S  S  N  G  P  Q  R  E  S  K  L  E  L  F  G  F  D  S  L  V  N  I  L  G  L  K  S :   M  T  G  D  Q  I  P  A  P  S  S  P  R  D  G  E  D  I  T  L  T  L  E  Q  P  K  :  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  P  F  F  F  Y  C  P  S  Q  P  R  G  V  Y  N  C  I  I  L  Y  I  K  G  H  T  G  P  K  F  C  *  </first_frame>
            <second_frame>  L  N  R  S  L  K  T  P  F  L  A  V  N  T  F  R  F  G  *  F  R  L  D  C  F  E  F  G  R  Q  W  K  V  E  K  R  L  R  L  R  R  K  M  S  S  L  Q  L  L  D  E  N  T  V  Q  W  W  R  M  T  M  I  V  Q  L  L  R  C  L  L  F  V  P  D  L  P  L  L  S  P  T  T  I  S   : R  T  S  K  *  V  S  I  Q  I  W  H  L  K  K  E  T  S  H  Y  P  I  I  V  A  M  V  L  K  E  N  P  N  W  N  Y  L  A  L  I  L  *  *  I  F  *  V  S  R   : V  *  Q  G  I  K  F  P  H  R  L  V  Q  E  M  V  R  I  *  L  S  R  L  S  N  L  S :   *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F  L  F  S  F  T  A  L  H  N  Q  E  G  F  T  I  V  *  F  F  I  L  R  G  T  L  D  Q  N  F  A  S </second_frame>
            <third_frame>   *  I  A  A  *  K  P  L  F  S  R  L  T  L  S  G  L  G  S  S  D  L  T  A  L  N  S  G  G  N  G  R  W  R  R  D  *  D  C  G  G  K  *  V  P  F  S  Y  W  T  K  I  Q  S  S  G  G  A  *  Q  *  *  C  S  Y  *  D  V  F  C  S  S  R  I  F  L  F  S  P  Q  P  R  S  Q  :  E  R  Q  S  R  C  P  S  K  Y  G  I  *  R  K  R  R  V  I  I  Q  S  *  *  Q  W  S  S  K  R  I  Q  T  G  I  I  W  L  *  F  S  S  K  Y  S  R  S  Q  E  :  Y  D  R  G  S  N  S  R  T  V  *  S  K  R  W  *  G  Y  N  S  H  A  *  A  T  *   : A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F  S  F  F  L  L  L  P  F  T  T  K  R  G  L  Q  L  Y  N  S  L  Y  *  G  A  H  W  T  K  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22079" stop="21904"/>
                    <exon start="19948" stop="19802"/>
                    <exon start="17766" stop="17688"/>
                    <exon start="6332" stop="6150"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IREAMEGGEEIEIAEENEFPSVIGRKYSPVVAHDNDSAVIEMSSVRPGSSSSLPNHDLKNVKVGVHPNMASEERDESLSNHSSNGPQRESKLELFGFDSLVNILGLKSMTGDQIPAPSSPRDGEDITLTLEQPKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7086" e_stop="6582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7086" e_stop="6582" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7086" stop="6582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGAT</gDNA_template>
            <first_frame> H  L  C  L  Y  Y  R  W  R  L  P  *  T  C  *  G  C  *  G  R  L  Q  G  T  K  Y  L  Y  *  L  Q  A  M  *  R  C  S  *  D  C  C  C  P  K  H  V  *  R  L  S  R  H  C  S  D  Y  G  S  R  K  S  Q  A  K  Y  N  R  Y  A  V  P  *  D  L  A  T  *  K  F  D  *  Y  S  C  Y  L  C  W  N  N  *  *  L  H  C  C  E  Q  G  C  C  H  C  Q  G  S  R  R  M  A  *  *  V  P  K  T  V  W  Y  H  R  F  I  L  D  S  E  R  W  W  S  H  A  S  T  L  S  A  P  P  Y  K  R  *  L  *  R  L  *  D  T  G  V  L  H  C  R  G  R  F  *  C  R  G  I  E  G  *  </first_frame>
            <second_frame>  I  F  V  S  I  I  D  G  D  Y  H  E  R  A  E  D  A  K  D  A  C  K  E  L  S  T  Y  I  D  Y  K  Q  C  E  G  V  A  E  I  V  V  A  P  S  M  S  E  G  F  R  G  I  V  Q  T  M  G  L  G  N  L  K  P  N  I  I  V  M  R  Y  P  E  I  W  R  R  E  N  L  T  D  I  P  A  T  F  V  G  I  I  N  D  C  I  V  A  N  K  A  V  V  I  V  K  G  L  D  E  W  P  N  E  Y  Q  R  Q  Y  G  T  I  D  L  Y  W  I  V  R  D  G  G  L  M  L  L  L  S  Q  L  L  L  T  K  D  S  F  E  G  C  K  I  Q  V  F  C  I  A  E  E  D  S  D  A  E  G  L  K  A  D </second_frame>
            <third_frame>   S  L  S  L  L  S  M  E  T  T  M  N  V  L  R  M  L  R  T  L  A  R  N  *  V  P  I  L  T  T  S  N  V  K  V  *  L  R  L  L  L  P  Q  A  C  L  K  A  F  E  A  L  F  R  L  W  V  S  E  I  S  S  Q  I  *  S  L  C  G  T  L  R  F  G  D  V  K  I  *  L  I  F  L  L  P  L  L  E  *  L  M  T  A  L  L  R  T  R  L  L  S  L  S  R  V  S  T  N  G  L  M  S  T  K  D  S  M  V  P  S  I  Y  T  G  *  *  E  M  V  V  S  C  F  Y  S  L  S  S  S  L  Q  K  I  A  L  K  A  V  R  Y  R  C  S  A  L  Q  R  K  I  L  M  Q  R  D  *  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7085" stop="6582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVSIIDGDYHERAEDAKDACKELSTYIDYKQCEGVAEIVVAPSMSEGFRGIVQTMGLGNLKPNIIVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFEGCKIQVFCIAEEDSDAEGLKAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11816" e_stop="11757"/>
            <exon e_start="11122" e_stop="10722"/>
            <exon e_start="9703" e_stop="9542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11816" e_stop="11757" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11756" i_stop="11123" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11122" e_stop="10722" e_length="401"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.970">
            <gDNA_intron_boundary i_start="10721" i_stop="9704" i_length="1018"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="9703" e_stop="9542" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11816" stop="11757"/>
              <exon start="11122" stop="10722"/>
              <exon start="9703" stop="9542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG : GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG : TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</gDNA_template>
            <first_frame> S  G  F  C  A  T  I  R  S  C  C  N  *  R  *  A  F  D  *  *  :  V  I  I  C  Y  S  C  L  A  I  S  G  Y  C  L  C  W  Y  N  P  L  N  L  G  G  S  P  S  K  P  Y  W  C  S  T  S  P  C  S  D  C  K  *  *  N  S  T  C  S  *  L  F  *  S  G  R  W  T  *  A  S  C  G  Y  S  L  H  C  H  H  L  H  W  L  C  C  N  R  E  S  R  S  C  L  T  Y  Y  N  N  V  L  P  R  M  L  C  W  R  E  L  I  L  L  P  S  G  S  V  R  C  S  Q  L  A  T  S  V  E  I  S  P  L  E  P  L  S  C  W  S  I  T  L  Y  S :   D  H  V  F  D  F  L  G  I  H  H  C  I  T  C  P  S  K  P  H  I  L  L  R  *  Y  K  G  E  S  R  R  L  G  *  R  F  *  E  C  V  F  S  A  C  S  S  Q  F  A  I  F  G   </first_frame>
            <second_frame>  L  V  S  V  L  L  F  G  A  V  A  T  R  D  K  L  L  T  D  R :   L  L  S  A  T  V  A  W  P  F  P  A  I  V  Y  V  G  I  I  L  S  T  L  G  A  A  L  Q  S  L  T  G  A  P  R  L  L  A  A  I  A  N  D  E  I  L  P  V  L  N  Y  F  K  V  A  D  G  H  E  P  H  V  A  T  L  F  T  A  I  I  C  I  G  C  V  V  I  G  N  L  D  L  V  S  P  T  T  T  M  F  Y  L  V  C  Y  A  G  V  N  L  S  C  F  L  L  D  L  L  D  A  P  S  W  R  P  R  W  K  F  H  H  W  S  L  S  L  V  G  A  L  L  C  I   : V  T  M  F  L  I  S  W  A  F  T  I  V  S  L  A  L  A  S  L  I  Y  Y  Y  V  S  I  K  G  K  A  G  D  W  G  D  G  F  K  S  A  Y  F  Q  L  A  L  R  S  L  R  S  L  G  </second_frame>
            <third_frame>   W  F  L  C  Y  Y  S  E  L  L  Q  L  E  I  S  F  *  L  I   : G  Y  Y  L  L  Q  L  P  G  H  F  R  L  L  F  M  L  V  *  S  S  Q  P  W  G  Q  P  F  K  A  L  L  V  L  H  V  S  L  Q  R  L  Q  M  M  K  F  Y  L  F  L  T  I  L  K  W  Q  M  D  M  S  L  M  W  L  L  S  S  L  P  S  S  A  L  V  V  L  *  S  G  I  *  I  L  S  H  L  L  Q  Q  C  F  T  S  Y  A  M  L  A  *  T  Y  P  A  S  F  W  I  C  *  M  L  P  A  G  D  L  G  G  N  F  T  T  G  A  S  L  L  L  E  H  Y  F  V  *  :  *  P  C  F  *  F  P  G  H  S  P  L  Y  H  L  P  *  Q  A  S  Y  I  I  T  L  V  *  R  G  K  Q  E  T  G  V  T  V  L  R  V  R  I  F  S  L  L  F  A  V  C  D  L  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11815" stop="11757"/>
                    <exon start="11122" stop="10722"/>
                    <exon start="9703" stop="9543"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSVLLFGAVATRDKLLTDRLLSATVAWPFPAIVYVGIILSTLGAALQSLTGAPRLLAAIANDEILPVLNYFKVADGHEPHVATLFTAIICIGCVVIGNLDLVSPTTTMFYLVCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVTMFLISWAFTIVSLALASLIYYYVSIKGKAGDWGDGFKSAYFQLALRSLRSLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="36337" PGL_stop="36610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36337" e_stop="36610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="36337" e_stop="36610" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36337" stop="36492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36385" stop="36610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTGAAAATTTAAGCATTTGATAGCAATAGGATGTGTCAAAATCCACTTCGGGAAAACAGAGTATTAATTAAACAAAACACAAGGAACAGGTTCAAACACTAAAACAATATAGAGATCTCATCTAAAGCCAAAATGCTCATTCATCCTCCTGGCTGTGCAACCTAGCAAGCTTGTTTGTTATGACAACATCAAGTTGGGCAGCTCGCTCGACAATCTCTTTCCTCTTCCTAGTGGAAACATTGTGTGCGATTTCTGCACAGTAAGTTCTG</gDNA_template>
            <first_frame> K  I  *  K  F  K  H  L  I  A  I  G  C  V  K  I  H  F  G  K  T  E  Y  *  L  N  K  T  Q  G  T  G  S  N  T  K  T  I  *  R  S  H  L  K  P  K  C  S  F  I  L  L  A  V  Q  P  S  K  L  V  C  Y  D  N  I  K  L  G  S  S  L  D  N  L  F  P  L  P  S  G  N  I  V  C  D  F  C  T  V  S  S  </first_frame>
            <second_frame>  K  S  E  N  L  S  I  *  *  Q  *  D  V  S  K  S  T  S  G  K  Q  S  I  N  *  T  K  H  K  E  Q  V  Q  T  L  K  Q  Y  R  D  L  I  *  S  Q  N  A  H  S  S  S  W  L  C  N  L  A  S  L  F  V  M  T  T  S  S  W  A  A  R  S  T  I  S  F  L  F  L  V  E  T  L  C  A  I  S  A  Q  *  V  L </second_frame>
            <third_frame>   N  L  K  I  *  A  F  D  S  N  R  M  C  Q  N  P  L  R  E  N  R  V  L  I  K  Q  N  T  R  N  R  F  K  H  *  N  N  I  E  I  S  S  K  A  K  M  L  I  H  P  P  G  C  A  T  *  Q  A  C  L  L  *  Q  H  Q  V  G  Q  L  A  R  Q  S  L  S  S  S  *  W  K  H  C  V  R  F  L  H  S  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0064G08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42734" PGL_stop="43952"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42734" e_stop="42799"/>
            <exon e_start="43558" e_stop="43952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.985"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="42734" e_stop="42799" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="43558" e_stop="43952" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42799"/>
              <exon start="43558" stop="43952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCT</gDNA_template>
            <first_frame> G  D  T  P  L  A  G  R  R  H  S  P  H  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  V  S  D  M  S  F  P  K  S  F  F  L  *  Y  Y  L  V  S  C  F  L  T  *  L  F  S  L  V  S  T  S  G  S  *  A  F  F  W  S  S  *  I  K  G  M  F  A  T  G  Y  Y  P  Q  E  P  V  E  I  C  I  D  I  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  N  *  D  R  *  N  I  P  C  W  F  H  G  *  E  H  L  H  W  I  V  F  S  F  Q  N   </first_frame>
            <second_frame>  E  T  H  L  S  P  V  D  V  T  R  R  I  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L  *  V  T  C  L  S  P  S  L  F  F  Y  S  T  T  *  F  P  A  S  *  L  D  C  S  L  W  S  L  L  Q  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  I  R  T  D  K  T  Y  P  A  G  F  M  G  K  N  T  S  I  G  L  F  F  H  F  K  T  </second_frame>
            <third_frame>   R  H  T  S  R  R  *  T  S  L  A  A  F  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F  C  K  *  H  V  F  P  Q  V  F  F  F  I  V  L  L  S  F  L  L  L  D  L  T  V  L  F  G  L  Y  F  R  L  L  S  L  L  L  V  L  I  N  Q  G  N  V  C  H  W  L  L  S  S  G  T  G  *  N  M  H  *  H  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  K  H  T  L  L  V  S  W  V  R  T  P  P  L  D  C  F  F  I  S  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43700" stop="43951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDCSLWSLLQAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKIRTDKTYPAGFMGKNTSIGLFFHFKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="46610" PGL_stop="48971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46610" e_stop="46699"/>
            <exon e_start="47538" e_stop="47615"/>
            <exon e_start="47710" e_stop="47890"/>
            <exon e_start="48159" e_stop="48588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="46610" e_stop="46699" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47538" e_stop="47615" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47710" e_stop="47890" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="48159" e_stop="48588" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46610" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCAC</gDNA_template>
            <first_frame> V  S  S  T  R  *  G  L  R  Q  T  H  L  A  G  S  H  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  V  *  I  C  F  L  L  L  L  Y  S  G  L  L  *  M  L  C  Y  *  V  V  T  L  F  S  A  L  C  S  S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S   </first_frame>
            <second_frame>  Y  L  R  L  V  R  V  *  D  K  H  I  S  P  V  A  I  T  R  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  R  F  E  S  V  S  C  F  F  F  I  P  V  C  F  E  C  C  A  I  K  *  *  P  C  F  L  L  F  A  V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  </second_frame>
            <third_frame>   I  F  D  S  L  G  F  K  T  N  T  S  R  R  *  P  S  L  A  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q  G  L  N  L  F  P  A  S  S  L  F  R  F  A  L  N  A  V  L  L  S  S  D  L  V  F  C  S  L  Q  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46628" stop="46699"/>
                    <exon start="47538" stop="47615"/>
                    <exon start="47710" stop="47890"/>
                    <exon start="48159" stop="48262"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRQTHLAGSHHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48247" stop="48588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSQGLNLFPASSLFRFALNAVLLSSDLVFCSLQFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47840" e_stop="47890"/>
            <exon e_start="48159" e_stop="48256"/>
            <exon e_start="48346" e_stop="48971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="0.961"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="47840" e_stop="47890" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48159" e_stop="48256" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="48346" e_stop="48971" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47840" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</gDNA_template>
            <first_frame> W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  </first_frame>
            <second_frame>  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S </second_frame>
            <third_frame>   V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47842" stop="47890"/>
                    <exon start="48159" stop="48256"/>
                    <exon start="48346" stop="48780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49627" PGL_stop="52165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49627" e_stop="49709"/>
            <exon e_start="50532" e_stop="50609"/>
            <exon e_start="50704" e_stop="50884"/>
            <exon e_start="51141" e_stop="51238"/>
            <exon e_start="51329" e_stop="52165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.984"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.994"/>
          <exon-intron don_prob="0.992" acc_prob="0.968" e_score="0.980"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="49627" e_stop="49709" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="50532" e_stop="50609" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="50704" e_stop="50884" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="51141" e_stop="51238" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.968">
            <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="51329" e_stop="52165" e_length="837"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49627" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="52165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49646" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCATTAGGGTTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAAATGATGTGGGTTCTTTTGTCCTACTAATTGTACAATCAAACATAATTGTC</gDNA_template>
            <first_frame> H  L  I  R  V  E  D  T  R  L  S  P  V  D  V  T  L  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  T  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  Y  T  H  S  E  M  R  K  P  S :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  V  S  H  I  S  T  R  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  *  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  V  K  V  V  S  H  G  S  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  D  R  L  N  L  R  *  I  *  *  V  A  L  F  F  S  L  F  R  G  L  P  P  L  I  F  G  V  A  F  Q  H  P  M  Y  S  V  L  F  Y  I  P  F  F  V  R  K  K  Q  *  L  S  L  D  Q  S  V  A  F  L  C  D  G  I  S  L  *  E  F  K  D  L  V  D  E  F  I  H  L  F  Q  N  E  F  L  V  V  I  S  S  N  P  T  C  C  C  I  P  K  L  V  *  F  T  K  P  D  S  *  F  H  F  H  K  L  Q  M  M  W  V  L  L  S  Y  *  L  Y  N  Q  T  *  L   </first_frame>
            <second_frame>  I  S  L  G  L  K  T  H  A  S  R  R  *  T  S  L  S  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  K  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   R  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  T  L  T  Q  R  *  G  S  Q   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  Y  P  I  S  Q  H  V  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  D  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  *  R  *  *  A  M  G  L  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  M  I  G  *  T  *  D  E  F  N  R  L  R  Y  F  S  L  C  L  E  G  C  H  L  L  F  L  V  L  H  F  N  I  L  C  T  R  Y  C  F  T  Y  L  F  L  S  G  K  N  N  D  *  V  *  T  N  Q  L  P  F  Y  V  M  V  F  H  C  K  S  L  R  T  L  S  M  S  L  F  T  C  F  K  M  S  F  W  L  *  Y  L  Q  I  Q  P  A  V  V  F  Q  S  W  C  S  S  L  N  L  I  R  N  F  I  F  I  N  F  K  *  C  G  F  F  C  P  T  N  C  T  I  K  H  N  C  </second_frame>
            <third_frame>   S  H  *  G  *  R  H  T  P  L  A  G  R  R  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  *  *  V  E  L  E  M  N  L  I  G  C  A  I  F  L  F  V  *  R  V  A  T  S  Y  F  W  C  C  I  S  T  S  Y  V  L  G  I  V  L  H  T  F  F  C  Q  E  K  T  M  T  E  F  R  P  I  S  C  L  F  M  *  W  Y  F  I  V  R  V  *  G  P  C  R  *  V  Y  S  L  V  S  K  *  V  F  G  C  N  I  F  K  S  N  L  L  L  Y  S  K  V  G  V  V  H  *  T  *  F  V  I  S  F  S  *  T  S  N  D  V  G  S  F  V  L  L  I  V  Q  S  N  I  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49644" stop="49709"/>
                    <exon start="50532" stop="50609"/>
                    <exon start="50704" stop="50884"/>
                    <exon start="51141" stop="51238"/>
                    <exon start="51329" stop="51763"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHTPLAGRRHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53163" PGL_stop="55500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53163" e_stop="53235"/>
            <exon e_start="54020" e_stop="54097"/>
            <exon e_start="54193" e_stop="54373"/>
            <exon e_start="54642" e_stop="54739"/>
            <exon e_start="54824" e_stop="55500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.959"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="53163" e_stop="53235" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54020" e_stop="54097" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54193" e_stop="54373" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54642" e_stop="54739" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.795">
            <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="54824" e_stop="55500" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53163" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTC</gDNA_template>
            <first_frame> G  L  K  R  H  T  S  R  R  L  P  S  L  A  A  V  N  Q  S  G  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  L  P  T  S  L  *  H  *  G  S  V  P  P  P  L  T  Q  R  R  G  S  Q   : V  Q  T  L  Q  G  S  I  S  P  V  W  T  E  G  Y  P  I  S  Q  H  I  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  R  Y  P  F  G  E  C  V  H  S  W  *  R  *  *  A  M  G  V  F  T  *  G  *  R  Y  Q  V  I  Y  Y  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  I  I  I  G  *  T  *  D  *  F  N  R  F  G  H  F  S  L  C  L  E  G  C  R  S  Y  F  L  C  C  I  S  T  S  V  Y  L  V  L  F  Y  I  P  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  Y  S  L  *  S  L  S  M  S  L  F  T  Y  F </first_frame>
            <second_frame>  V  *  R  D  T  P  L  A  G  C  R  H  S  P  Q  L  I  S  R  E  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  *  S  *  V  E  L  E  I  N  L  I  D  L  V  I  F  L  F  V  *  R  D  A  V  L  I  F  C  V  A  F  Q  H  L  C  T  W  Y  Y  F  T  Y  L  F  L  S  G  K  K  K  D  S  V  E  I  N  Q  L  P  F  M  *  *  Y  F  I  V  T  V  Y  D  L  C  R  *  V  Y  S  L  I   </second_frame>
            <third_frame>   F  E  E  T  H  L  S  P  V  A  V  T  R  R  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  A  S  D  F  F  M  T  L  R  V  G  S  A  S  T  H  S  E  T  R  K  P  S :   S  N  F  A  R  F  D  Q  S  S  L  D  R  R  V  S  H  I  S  T  H  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  S  L  P  V  W  G  M  C  S  L  L  V  K  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  L  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  N  N  H  R  L  N  L  R  L  I  *  *  I  W  S  F  F  S  L  F  R  G  M  P  F  L  F  F  V  L  H  F  N  I  C  V  L  G  T  I  L  H  T  F  F  C  Q  E  K  R  K  T  Q  L  R  S  I  S  C  L  L  C  D  S  I  L  L  L  Q  F  M  I  F  V  D  E  F  I  H  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53170" stop="53235"/>
                    <exon start="54020" stop="54097"/>
                    <exon start="54193" stop="54373"/>
                    <exon start="54642" stop="54739"/>
                    <exon start="54824" stop="55258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDTPLAGCRHSPQLISRETAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55293" stop="55499"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWSFFSLFRGMPFLFFVLHFNICVLGTILHTFFCQEKRKTQLRSISCLLCDSILLLQFMIFVDEFIHLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="55424" PGL_stop="55261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55424" e_stop="55261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="55424" e_stop="55261" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55424" stop="55261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATCTCAACTGAGTCTTTCTTTTTTCCTGACAAAAAAAGGTATGTAAAATAGTACCAAGTACACAGATGTTGAAATGCAACACAAAAAATAAGAACGGCATCCCTCTAAACAAAGAGAAAAATGACCAAATCTATTAAATTAATCTCAAGTTCAACCTATGAT</gDNA_template>
            <first_frame> *  S  Q  L  S  L  S  F  F  L  T  K  K  G  M  *  N  S  T  K  Y  T  D  V  E  M  Q  H  K  K  *  E  R  H  P  S  K  Q  R  E  K  *  P  N  L  L  N  *  S  Q  V  Q  P  M   </first_frame>
            <second_frame>  D  L  N  *  V  F  L  F  S  *  Q  K  K  V  C  K  I  V  P  S  T  Q  M  L  K  C  N  T  K  N  K  N  G  I  P  L  N  K  E  K  N  D  Q  I  Y  *  I  N  L  K  F  N  L  *  </second_frame>
            <third_frame>   I  S  T  E  S  F  F  F  P  D  K  K  R  Y  V  K  *  Y  Q  V  H  R  C  *  N  A  T  Q  K  I  R  T  A  S  L  *  T  K  R  K  M  T  K  S  I  K  L  I  S  S  S  T  Y  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0064G08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56610" PGL_stop="58942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56610" e_stop="56655"/>
            <exon e_start="57497" e_stop="57574"/>
            <exon e_start="57670" e_stop="57850"/>
            <exon e_start="58116" e_stop="58213"/>
            <exon e_start="58303" e_stop="58942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.925"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="0.969"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="56610" e_stop="56655" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57497" e_stop="57574" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="57670" e_stop="57850" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="58116" e_stop="58213" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="58303" e_stop="58942" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56610" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56616" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57838" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579513" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTAGT</gDNA_template>
            <first_frame> *  P  L  L  A  A  A  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  R  *  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  Y  Q  A  *  L  R  F  E  Q  D  C  *  L  H  Q  V  *  C  W  K  C  G  H  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  V  S  Y  S  C  L  K  C  L  G  W  T  Y  D  E  F  N  R  L  G  H  D  S  H  C  L  E  I  P  I  S  F  C  M  L  N  F  S  N  F  V  F  G  T  V  *  L  C  F  V  G  K  I  G  L  T  E  F  K  I  I  H  L  L  F  M  *  *  C  F  F  G  R  L   </first_frame>
            <second_frame>  S  R  Y  S  P  Q  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  A  A  *  N  V  *  V  G  L  M  M  N  L  T  G  W  A  M  I  L  T  V  *  R  Y  Q  S  H  F  V  C  *  I  L  A  I  L  Y  L  V  P  F  N  F  V  L  L  G  K  *  V  *  L  S  L  R  S  F  I  C  F  L  C  D  S  V  F  L  V  A  *  </second_frame>
            <third_frame>   A  V  T  R  R  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  L  S  S  L  T  *  I  R  T  R  L  L  T  S  S  S  L  M  L  E  M  W  S  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  S  Q  L  Q  L  L  K  M  S  R  L  D  L  *  *  I  *  Q  V  G  P  *  F  S  L  F  R  D  T  N  L  I  L  Y  V  E  F  *  Q  F  C  I  W  Y  R  L  T  L  F  C  W  E  N  R  F  D  *  V  *  D  H  S  F  A  F  Y  V  I  V  F  F  W  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56611" stop="56655"/>
                    <exon start="57497" stop="57574"/>
                    <exon start="57670" stop="57850"/>
                    <exon start="58116" stop="58213"/>
                    <exon start="58303" stop="58737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRYSPQLISRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56610" e_stop="56655"/>
            <exon e_start="57497" e_stop="57574"/>
            <exon e_start="57670" e_stop="58142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56610" e_stop="56655" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57497" e_stop="57574" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="57670" e_stop="58142" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56610" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56631" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="58142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATG</gDNA_template>
            <first_frame> *  P  L  L  A  A  A  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  R  *  D  L  P  C  W  F  H  G  *  E  Q  L  H  *  I  V  F  S  F  H  N  L  *  I  F  V  L  L  I  S  V  L  L  R  F  V  I  L  V  I  H  L  Y  T  W  F  H  S  S  E  D  N  C  *  S  D  C  L  Q  A  F  L  S  K  T  I  V  S  C  P  F  S  S  L  F  S  C  C  Y  V  C  *  I  P  *  *  I  G  N  A  V  I  L  F  V  *  M  L  L  L  F  Q  R  R  M </first_frame>
            <second_frame>  S  R  Y  S  P  Q  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M  G  K  N  S  S  I  R  L  F  F  H  F  I  I  F  R  F  L  F  S  L  F  L  C  C  L  G  L  L  S  *  *  F  I  Y  T  H  G  F  T  V  P  K  T  I  V  D  Q  I  V  Y  K  L  F  Y  Q  K  P  L  S  R  V  L  F  L  L  C  S  L  V  A  M  F  V  E  F  L  D  K  L  V  M  L  L  F  C  L  C  R  C  C  Y  Y  S  K  D  E   </second_frame>
            <third_frame>   A  V  T  R  R  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  R  L  T  L  L  V  S  W  V  R  T  A  P  L  D  C  F  F  I  S  *  S  L  D  F  C  S  P  Y  F  C  A  A  *  V  C  Y  L  S  D  S  S  I  H  M  V  S  Q  F  R  R  Q  L  L  I  R  L  S  T  S  F  F  I  K  N  H  C  L  V  S  F  F  F  F  V  L  L  L  L  C  L  L  N  S  L  I  N  W  *  C  C  Y  F  V  C  V  D  V  V  T  I  P  K  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56611" stop="56655"/>
                    <exon start="57497" stop="57574"/>
                    <exon start="57670" stop="57942"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRYSPQLISRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMGKNSSIRLFFHFIIFRFLFSLFLCCLGLLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57946" stop="58140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIYTHGFTVPKTIVDQIVYKLFYQKPLSRVLFLLCSLVAMFVEFLDKLVMLLFCLCRCCYYSKDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="58939" PGL_stop="58570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58939" e_stop="58570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="58939" e_stop="58570" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58939" stop="58570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCGACCAAAAAAACACTATCACATAAAAAGCAAATGAATGATCTTAAACTCAGTCAAACCTATTTTCCCAACAAAACAAAGTTAAACGGTACCAAATACAAAATTGCTAAAATTCAACATACAAAATGAGATTGGTATCTCTAAACAGTGAGAATCATGGCCCAACCTGTTAAATTCATCATAAGTCCAACCTAGACATTTTAAGCAGCTGTAGCTGACTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAAT</gDNA_template>
            <first_frame> K  R  P  K  K  H  Y  H  I  K  S  K  *  M  I  L  N  S  V  K  P  I  F  P  T  K  Q  S  *  T  V  P  N  T  K  L  L  K  F  N  I  Q  N  E  I  G  I  S  K  Q  *  E  S  W  P  N  L  L  N  S  S  *  V  Q  P  R  H  F  K  Q  L  *  L  T  E  Q  P  S  S  C  E  P  L  Q  *  *  I  T  *  Y  L  Y  P  *  V  E  T  P  M  A  Y  Y  P  C  Q  E  *  T  H  C  P  D  E  *  Q  T  R  A  P  G  S  P  E  </first_frame>
            <second_frame>  S  D  Q  K  N  T  I  T  *  K  A  N  E  *  S  *  T  Q  S  N  L  F  S  Q  Q  N  K  V  K  R  Y  Q  I  Q  N  C  *  N  S  T  Y  K  M  R  L  V  S  L  N  S  E  N  H  G  P  T  C  *  I  H  H  K  S  N  L  D  I  L  S  S  C  S  *  L  S  S  H  P  L  A  S  L  F  N  D  R  *  L  D  T  F  T  L  R  *  R  H  P  W  L  T  T  L  A  K  S  E  H  I  A  Q  T  S  S  K  L  V  P  Q  G  V  L  N </second_frame>
            <third_frame>   A  T  K  K  T  L  S  H  K  K  Q  M  N  D  L  K  L  S  Q  T  Y  F  P  N  K  T  K  L  N  G  T  K  Y  K  I  A  K  I  Q  H  T  K  *  D  W  Y  L  *  T  V  R  I  M  A  Q  P  V  K  F  I  I  S  P  T  *  T  F  *  A  A  V  A  D  *  A  A  I  L  L  R  A  S  S  M  I  D  N  L  I  P  L  P  L  G  R  D  T  H  G  L  L  P  L  P  R  V  N  T  L  P  R  R  V  A  N  S  C  P  R  E  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0064G08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="70566" PGL_stop="62656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70566" e_stop="70473"/>
            <exon e_start="70382" e_stop="70315"/>
            <exon e_start="69463" e_stop="68795"/>
            <exon e_start="68489" e_stop="68377"/>
            <exon e_start="67447" e_stop="67188"/>
            <exon e_start="66809" e_stop="66688"/>
            <exon e_start="65356" e_stop="65288"/>
            <exon e_start="64705" e_stop="64652"/>
            <exon e_start="64498" e_stop="64397"/>
            <exon e_start="63570" e_stop="63448"/>
            <exon e_start="63006" e_stop="62656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.931" acc_prob="0.833" e_score="0.991"/>
          <exon-intron don_prob="0.935" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.263" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70566" e_stop="70473" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70382" e_stop="70315" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="69463" e_stop="68795" e_length="669"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68794" i_stop="68490" i_length="305"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="68489" e_stop="68377" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.833">
            <gDNA_intron_boundary i_start="68376" i_stop="67448" i_length="929"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67447" e_stop="67188" e_length="260"/>
          </exon>
          <intron i_serial="5" don_prob="0.935" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67187" i_stop="66810" i_length="378"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66809" e_stop="66688" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.960" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66687" i_stop="65357" i_length="1331"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="65356" e_stop="65288" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65287" i_stop="64706" i_length="582"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64705" e_stop="64652" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64651" i_stop="64499" i_length="153"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64498" e_stop="64397" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="64396" i_stop="63571" i_length="826"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63570" e_stop="63448" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.263" acc_prob="0.877">
            <gDNA_intron_boundary i_start="63447" i_stop="63007" i_length="441"/>
          </intron>
          <exon e_serial="11" e_score="0.991">
            <gDNA_exon_boundary e_start="63006" e_stop="62656" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70566" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="68795"/>
              <exon start="68489" stop="68377"/>
              <exon start="67447" stop="67188"/>
              <exon start="66809" stop="66688"/>
              <exon start="65356" stop="65288"/>
              <exon start="64705" stop="64652"/>
              <exon start="64498" stop="64397"/>
              <exon start="63570" stop="63448"/>
              <exon start="63006" stop="62656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583693" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAAGGACAAAGGATAAGAGGAGTTATTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAG : ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG : ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACG : GTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAG : GCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAA : TTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCTGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAG : CATGGCAAAATTATATCAAGAGAGGAGCTAGAGAAAATTCTGGCGAAAGAGAAGACGGAAGAAATTGAG : GTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGAT : GATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAG : GGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGACGCCCCAGGCTATCAAG : GATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAGCACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACGATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTTTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACGCGGTTGGTATACTAACCAGA</gDNA_template>
            <first_frame> S  K  G  Q  R  I  R  G  V  I  Y  S  N  F  E  L  P  I  S  A  M  A  S  V  L  S  T  S  L  Y  Q   : D  R  G  L  R  I  V  A  S  T  D  G  F  V  P  T  I  C  C  P  Y  R  K  :  T  L  F  T  G  T  T  P  V  S  I  W  K  L  K  F  V  S  S  S  P  F  Q  K  A  P  L  A  P  C  I  K  C  E  N  K  E  K  N  Q  G  S  F  E  Q  V  S  V  E  R  F  P  Y  H  S  Y  M  D  S  T  S  G  Q  L  E  P  A  S  G  A  R  A  S  I  P  G  K  E  Y  W  P  E  G  T  A  S  R  V  Q  A  A  R  A  P  E  P  D  G  I  S  T  G  T  P  S  Y  G  K  A  P  G  S  R  R  K  K  Y  K  A  S  A  S  S  S  Q  P  S  E  I  N  V  I  S  D  D  P  L  E  T  P  D  S  V  P  E  E  P  K  D  L  S  S  E  Y  V  I  Y  Q  P  E  Q  D  E  E  E  L  T  G  Y  E  L  D  K  R  H  G  R  P  H  P  F  I  D  P  K  V  K  K  E  I  E  K  P  L  T  S  E  E  L  W  W  N  W  R  K  P  E  K  E  Q  W  S  R  W  Q  R  R  R  P  D  V  E  T  :  V  F  L  K  A  M  A  E  T  G  Q  V  K  L  Y  G  E  H  P  T  L  T  E  T  A  L  Y  R  A  R  R  H  L  Y  K  E  E  R :   L  Q  A  E  K  E  K  M  E  K  I  G  P  I  A  Y  Y  S  E  W  V  K  A  W  K  R  D  T  S  R  D  A  I  Q  K  H  F  E  E  T  G  E  D  E  N  T  Q  L  I  E  M  F  S  H  Q  T  D  R  E  Y  R  I  M  M  G  T  D  M  R  I  P  R  D  P  L  A  M  R  M  R  E  D  Q  I  K  Q   : I  W  G  G  D  P  V  Y  P  T  I  N  Y  I  Q  D  P  D  E  V  I  D  F  R  G  P  D  F  H  E  P  T  P  N  M  L  A  Y  L  K  E  :  H  G  K  I  I  S  R  E  E  L  E  K  I  L  A  K  E  K  T  E  E  I  E  :  V  A  E  I  D  E  A  M  A  R  A  V  D  I  G  E  N  D  :  D  E  E  E  G  S  E  A  E  G  E  E  E  D  E  K  I  T  R  N  W  S  V  L  K  S  N  P  E  L  S  K  S  K  :  G  K  P  K  K  K  D  M  S  L  E  E  A  V  D  D  S  E  N  L  T  D  F  L  M  D  F  D  E  D  E  *  G  *  W  T  P  Q  A  I  K  :  D  K  Q  I  I  F  I  P  I  N  K  A  L  L  I  T  A  P  A  S  S  L  *  W  S  R  *  T  Y  I  G  *  L  I  R  S  G  N  K  A  N  *  L  G  N  G  L  L  L  M  L  L  *  L  L  S  S  I  C  *  R  S  S  P  Q  K  S  R  F  F  I  E  S  F  G  Y  Y  F  C  G  C  N  W  I  I  L  *  S  K  *  K  M  E  N  A  N  V  V  A  C  I  Q  H  T  M  *  T  F  E  D  A  V  G  I  L  T  R </first_frame>
            <second_frame>  A  K  D  K  G  *  E  E  L  F  I  A  I  S  S  C  Q  F  Q  Q  W  L  L  Y  C  Q  L  P  C  I  K  :  I  E  D  *  E  L  *  P  L  L  M  D  L  C  Q  L  F  A  A  P  I  G  R :   P  C  L  Q  V  L  L  L  F  Q  Y  G  S  S  N  L  S  P  V  V  H  F  K  R  L  L  *  L  L  V  *  S  V  R  T  R  K  R  I  R  A  L  L  S  R  C  L  S  S  V  F  L  I  T  V  I  W  T  P  L  L  G  N  L  N  Q  H  L  E  L  A  L  V  F  L  G  R  S  T  G  Q  K  A  Q  L  V  E  F  R  P  P  G  L  L  N  Q  M  V  F  Q  L  E  L  H  L  M  E  K  L  L  E  V  E  E  R  S  T  R  H  L  L  P  L  P  S  L  Q  K  S  M  *  F  L  M  I  L  W  R  L  Q  I  V  Y  Q  K  S  Q  R  I  F  P  Q  S  M  S  F  I  S  L  N  K  M  K  K  S  *  Q  A  M  S  *  I  K  D  M  D  G  P  T  H  L  L  I  Q  R  *  R  R  K  *  R  S  R  L  L  V  K  N  Y  G  G  I  G  E  S  L  K  R  S  N  G  L  G  G  R  G  G  A  L  M  L  K  R :   S  F  L  K  L  W  Q  R  Q  D  K  *  S  S  M  V  S  I  L  H  *  Q  R  L  R  S  I  E  Q  G  D  I  Y  I  R  R  K   : G  Y  R  L  K  K  K  K  W  K  R  L  V  L  L  H  T  T  Q  S  G  S  K  L  G  K  E  I  L  L  E  M  P  F  K  S  I  L  K  R  L  V  K  M  R  T  L  N  S  S  K  C  S  P  I  K  Q  I  V  N  T  G  *  *  W  E  L  I  C  V  F  L  V  T  R  W  P  *  E  C  G  R  I  K  *  N  K  :  F  G  V  E  I  Q  F  T  R  P  L  I  T  F  K  I  L  M  K  *  L  I  S  G  V  Q  T  S  M  N  Q  H  Q  I  C  W  P  I  *  K  S :   M  A  K  L  Y  Q  E  R  S  *  R  K  F  W  R  K  R  R  R  K  K  L  R :   W  Q  K  L  M  K  L  W  Q  E  L  L  T  L  V  K  M  M :   M  K  K  K  E  V  R  L  K  V  K  R  R  M  R  K  L  H  A  I  G  V  F  *  K  V  I  P  S  L  A  N  Q  R :   V  N  P  K  R  K  T  C  L  W  R  K  L  *  T  I  L  K  I  *  Q  T  S  L  W  T  L  T  R  M  S  E  A  N  G  R  P  R  L  S  R :   I  S  K  L  F  S  S  P  S  T  K  L  C  *  L  Q  H  Q  H  L  P  Y  D  G  V  D  E  H  I  L  D  D  *  Y  D  L  A  T  R  P  T  N  L  G  T  V  C  C  *  C  C  C  D  S  *  A  A  S  A  E  D  L  H  P  R  R  V  D  F  L  *  K  A  L  G  I  I  F  V  D  V  I  G  L  S  C  K  A  N  E  K  W  R  M  L  M  *  *  L  V  S  S  T  Q  C  E  L  L  K  T  R  L  V  Y  *  P   </second_frame>
            <third_frame>   Q  R  T  K  D  K  R  S  Y  L  *  Q  F  R  V  A  N  F  S  N  G  F  C  I  V  N  F  L  V  S  R :   *  R  T  E  N  C  S  L  Y  *  W  I  C  A  N  Y  L  L  P  L  S  E   : D  L  V  Y  R  Y  Y  S  C  F  N  M  E  A  Q  I  C  L  Q  *  S  I  S  K  G  S  F  S  S  L  Y  K  V  *  E  Q  G  K  E  S  G  L  F  *  A  G  V  C  R  A  F  S  L  S  Q  L  Y  G  L  H  F  W  A  T  *  T  S  I  W  S  S  R  *  Y  S  W  E  G  V  L  A  R  R  H  S  *  S  S  S  G  R  Q  G  S  *  T  R  W  Y  F  N  W  N  S  I  L  W  K  S  S  W  K  *  K  K  E  V  Q  G  I  C  F  L  F  P  A  F  R  N  Q  C  N  F  *  *  S  S  G  D  S  R  *  C  T  R  R  A  K  G  S  F  L  R  V  C  H  L  S  A  *  T  R  *  R  R  A  D  R  L  *  A  R  *  K  T  W  T  A  P  P  I  Y  *  S  K  G  K  E  G  N  R  E  A  A  Y  *  *  R  I  M  V  E  L  E  K  A  *  K  G  A  M  V  *  V  A  E  A  A  P  *  C  *  N   : G  L  S  *  S  Y  G  R  D  R  T  S  K  A  L  W  *  A  S  Y  I  D  R  D  C  A  L  *  S  K  E  T  F  I  *  G  G  K  :  A  T  G  *  K  R  K  N  G  K  D  W  S  Y  C  I  L  L  R  V  G  Q  S  L  E  K  R  Y  F  S  R  C  H  S  K  A  F  *  R  D  W  *  R  *  E  H  S  T  H  R  N  V  L  P  S  N  R  S  *  I  P  D  N  D  G  N  *  Y  A  Y  S  S  *  P  V  G  H  E  N  A  G  G  S  N  K  T  N :   L  G  W  R  S  S  L  P  D  H  *  L  H  S  R  S  *  *  S  D  *  F  Q  G  S  R  L  P  *  T  N  T  K  Y  V  G  L  F  E  R   : A  W  Q  N  Y  I  K  R  G  A  R  E  N  S  G  E  R  E  D  G  R  N  *   : G  G  R  N  *  *  S  Y  G  K  S  C  *  H  W  *  K  *   : *  *  R  R  R  K  *  G  *  R  *  R  G  G  *  E  N  Y  T  Q  L  E  C  F  E  K  *  S  R  A  *  Q  I  K   : G  *  T  Q  K  E  R  H  V  S  G  G  S  C  R  R  F  *  K  F  N  R  L  P  Y  G  L  *  R  G  *  V  R  L  M  D  A  P  G  Y  Q   : G  *  A  N  Y  F  H  P  H  Q  Q  S  S  V  D  Y  S  T  S  I  F  P  M  M  E  S  M  N  I  Y  W  M  I  D  T  I  W  Q  Q  G  Q  L  T  W  E  R  F  V  V  D  A  A  V  T  L  K  Q  H  L  L  K  I  F  T  P  E  E  *  I  F  Y  R  K  L  W  V  L  F  L  W  M  *  L  D  Y  L  V  K  Q  M  K  N  G  E  C  *  C  S  S  L  Y  P  A  H  N  V  N  F  *  R  R  G  W  Y  T  N  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70566" stop="70473"/>
                    <exon start="70382" stop="70315"/>
                    <exon start="69463" stop="68795"/>
                    <exon start="68489" stop="68377"/>
                    <exon start="67447" stop="67188"/>
                    <exon start="66809" stop="66688"/>
                    <exon start="65356" stop="65288"/>
                    <exon start="64705" stop="64652"/>
                    <exon start="64498" stop="64397"/>
                    <exon start="63570" stop="63475"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKGQRIRGVIYSNFELPISAMASVLSTSLYQDRGLRIVASTDGFVPTICCPYRKTLFTGTTPVSIWKLKFVSSSPFQKAPLAPCIKCENKEKNQGSFEQVSVERFPYHSYMDSTSGQLEPASGARASIPGKEYWPEGTASRVQAARAPEPDGISTGTPSYGKAPGSRRKKYKASASSSQPSEINVISDDPLETPDSVPEEPKDLSSEYVIYQPEQDEEELTGYELDKRHGRPHPFIDPKVKKEIEKPLTSEELWWNWRKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGEHPTLTETALYRARRHLYKEERLQAEKEKMEKIGPIAYYSEWVKAWKRDTSRDAIQKHFEETGEDENTQLIEMFSHQTDREYRIMMGTDMRIPRDPLAMRMREDQIKQIWGGDPVYPTINYIQDPDEVIDFRGPDFHEPTPNMLAYLKEHGKIISREELEKILAKEKTEEIEVAEIDEAMARAVDIGENDDEEEGSEAEGEEEDEKITRNWSVLKSNPELSKSKGKPKKKDMSLEEAVDDSENLTDFLMDFDEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63001" stop="62804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANYFHPHQQSSVDYSTSIFPMMESMNIYWMIDTIWQQGQLTWERFVVDAAVTLKQHLLKIFTPEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70483" e_stop="70473"/>
            <exon e_start="70382" e_stop="69681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70483" e_stop="70473" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70382" e_stop="69681" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70483" stop="70473"/>
              <exon start="70382" stop="69681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTATCAAG : ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTG</gDNA_template>
            <first_frame> L  V  S  R :   *  R  T  E  N  C  S  L  Y  *  W  I  C  A  N  Y  L  L  P  L  S  E  G  V  F  R  L  L  *  T  P  T  N  L  I  M  F  V  N  H  H  W  K  *  N  L  I  L  C  V  V  R  *  *  V  K  R  S  T  F  T  K  L  F  V  S  K  S  S  N  C  *  F  *  V  Y  M  *  L  F  V  S  S  R  G  I  N  G  L  G  E  L  *  E  S  R  R  D  *  N  G  L  Y  N  Q  F  Y  S  R  E  G  Y  F  W  E  F  D  I  C  L  R  I  W  L  T  Y  S  R  V  L  E  L  T  I  R  E  S  C  L  K  E  M  F  Y  F  N  G  K  E  S  L  V  R  F  *  E  L  F  V  V  S  W  *  *  I  V  F  *  F  *  Y  A  S  N  F  L  Y  T  I  N  L  C  A  H  L  I  A  D  S  L  S  Y  P  S  T  C  T  P  S  L  P  A  Y  V  Y  F  F  I  C  *  T  V  Y  T  Y  A  S  A  L  N  T  S  T  C  C  S  L  *  R  *  N  S  Y   </first_frame>
            <second_frame>  L  Y  Q   : D  R  G  L  R  I  V  A  S  T  D  G  F  V  P  T  I  C  C  P  Y  R  K  V  F  L  D  Y  Y  E  L  Q  Q  I  L  L  C  L  L  I  T  T  G  S  R  I  L  Y  S  V  L  L  D  N  K  *  K  G  A  L  L  Q  N  C  S  S  L  R  V  Q  I  V  D  F  R  F  I  C  D  F  L  Y  L  R  E  E  S  M  V  W  V  S  Y  K  S  L  E  E  I  K  M  V  Y  I  I  N  S  I  Q  E  R  D  I  F  G  S  L  I  Y  A  *  G  Y  G  *  R  I  L  E  C  *  S  *  R  S  G  K  A  V  *  R  K  C  F  T  S  M  A  K  R  V  W  L  D  F  R  S  Y  L  *  F  H  G  S  K  L  F  S  D  F  D  M  H  Q  I  S  F  I  Q  L  I  C  V  L  I  L  *  L  T  L  F  L  I  P  P  H  V  H  Q  V  Y  L  P  M  F  T  S  S  F  A  E  L  C  I  R  M  H  L  H  *  T  P  A  H  V  A  L  C  D  G  E  I  H  I  </second_frame>
            <third_frame>   C  I  K  :  I  E  D  *  E  L  *  P  L  L  M  D  L  C  Q  L  F  A  A  P  I  G  R  C  F  *  I  I  M  N  S  N  K  S  Y  Y  V  C  *  S  P  L  E  V  E  S  Y  T  L  C  C  *  I  I  S  K  K  E  H  F  Y  K  I  V  R  L  *  E  F  K  L  L  I  L  G  L  Y  V  T  F  C  I  F  E  R  N  Q  W  F  G  *  A  I  R  V  *  K  R  L  K  W  F  I  *  S  I  L  F  K  R  G  I  F  L  G  V  *  Y  M  L  E  D  M  V  N  V  F  *  S  V  R  A  D  D  Q  G  K  L  F  E  G  N  V  L  L  Q  W  Q  R  E  F  G  *  I  L  G  V  I  C  S  F  M  V  V  N  C  F  L  I  L  I  C  I  K  F  P  L  Y  N  *  S  V  C  S  S  Y  S  *  L  S  F  L  S  L  H  M  Y  T  K  F  T  C  L  C  L  L  L  H  L  L  N  C  V  Y  V  C  I  C  I  E  H  Q  H  M  L  L  S  V  T  V  K  F  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70215" stop="70021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGALLQNCSSLRVQIVDFRFICDFLYLREESMVWVSYKSLEEIKMVYIINSIQERDIFGSLIYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="79046" PGL_stop="71932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79046" e_stop="78573"/>
            <exon e_start="75756" e_stop="75524"/>
            <exon e_start="75063" e_stop="74773"/>
            <exon e_start="73066" e_stop="72938"/>
            <exon e_start="72842" e_stop="72669"/>
            <exon e_start="72563" e_stop="72456"/>
            <exon e_start="72361" e_stop="71932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.668" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79046" e_stop="78573" e_length="474"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="78572" i_stop="75757" i_length="2816"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="75756" e_stop="75524" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75063" e_stop="74773" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73066" e_stop="72938" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.967">
            <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72842" e_stop="72669" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.863" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72668" i_stop="72564" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72563" e_stop="72456" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.668">
            <gDNA_intron_boundary i_start="72455" i_stop="72362" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="72361" e_stop="71932" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79046" stop="78573"/>
              <exon start="75756" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72669"/>
              <exon start="72563" stop="72456"/>
              <exon start="72361" stop="71932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGACTCTAGGCTCGAAAGCTTGGGAAGAATTGGATAAATATGAGGAGAAAGGGATTGAGATGAATTCCATACTTGAGGGAAAGCCTGAATCATGTCCTTCATGGGTTTCTAGTAGTGGAGCACAAATTGCTAAAACAGATCATATGATGTTCCTACCTTGTGGGCTTGCAGCAGGTTCTTCTATAACACTTATTGGTACTCCTCGTTATGCTCATCATGAGTATGTACCACAGCTTGCCAAAATAAGGGCTGCTGATGCATTAGTCTTGGTTTCCCAATTTATGATTGAATTACAAGGTTTAAAATCTGTGGTTGGTGAGGATCCACCAAAGATTTTGCATCTGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTG : TTGATGGATATTTGAGATGTGAGAAGTGGATGCGGAATGACATTGTTGATACTCGAGAGTCGAAAATATTCTCATGGTTTGATCGATTCATTGGACGTGCAAAGAAGCCAGAGGTGACATGGCCTTTCCCATTTGTGGAGGGTAGGATGTTTGTTCTAACTATTCGTGCTGGTATTGATGGCTACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT : GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG : AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG : GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAG : GAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGG : ATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACAGTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAGAAATGAAGGTGTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCC</gDNA_template>
            <first_frame> L  G  L  *  A  R  K  L  G  K  N  W  I  N  M  R  R  K  G  L  R  *  I  P  Y  L  R  E  S  L  N  H  V  L  H  G  F  L  V  V  E  H  K  L  L  K  Q  I  I  *  C  S  Y  L  V  G  L  Q  Q  V  L  L  *  H  L  L  V  L  L  V  M  L  I  M  S  M  Y  H  S  L  P  K  *  G  L  L  M  H  *  S  W  F  P  N  L  *  L  N  Y  K  V  *  N  L  W  L  V  R  I  H  Q  R  F  C  I  *  I  L  E  *  E  E  I  G  A  V  D  Q  *  S  N  T  I  L  A  I  E  C  N  G  E  Q  L  T  G  V  M  V  C  L  Q  S  M  M  M  T  C  L  :  L  M  D  I  *  D  V  R  S  G  C  G  M  T  L  L  I  L  E  S  R  K  Y  S  H  G  L  I  D  S  L  D  V  Q  R  S  Q  R  *  H  G  L  S  H  L  W  R  V  G  C  L  F  *  L  F  V  L  V  L  M  A  T  I  S  M  L  V  G  G  M  *  L  H  F  H  I  E  L :   A  S  H  W  K  M  L  Q  G  W  Q  S  E  V  T  *  I  Y  I  R  F  M  L  H  L  F  Q  P  L  I  Q  V  F  L  P  K  E  C  W  I  S  Q  R  S  G  N  L  F  L  Y  P  R  I  A  F  N  F  S  L  G  C  F  L  P  P  I  T  L  L  S  V  W  Q  S  G  K  H  G  C  R  L  Q  Q  S  N  P  Q  T  *  Q  S  A  S  L  L  L  * :   I  H  E  R  S  *  M  L  Y  *  R  R  K  Q  I  T  L  G  T  L  *  L  S  P  L  S  I  D  T  S  *  W  F  L  K  L  L  P  S  A  S  M  G :   F  R  M  *  Q  L  H  I  S  *  N  V  T  M  I  L  S  L  G  *  M  Q  S  L  E  K  F  N  V  S  L  L  D  D  L  F  T  W  A  I  L  I  S  C  I  D  H  F  E  Q  E  S  G  Q  *  L  L  R :   S  G  Q  K  M  Y  T  P  L  M  L  M  D  Q  D  I  *  L  Q  V  I  L  P  N  I  S  L  L  N  I  G  T  K  A  C  G :   S  S  K  W  R  M  *  A  W  V  C  G  L  R  V  T  T  V  Q  L  L  Y  S  T  L  T  T  G  S  S  V  N  M  G  V  W  K  T  I  S  R  L  I  I  S  L  H  D  R  C  S  V  C  G  T  I  Y  S  R  V  R  P  I  A  A  T  S  R  V  I  *  P  F  F  A  A  *  W  T  H  N  L  N  C  I  I  F  F  L  P  *  D  L  T  R  R  N  E  G  V  C  C  C  I  C  S  D  G  C  F  S  L  T  Y  D  L  T  W  N  I  G  H  R  D  G  F  V  H  P  D  L  Y  T  V  Y  *  S  L  Y  R  I  H  A </first_frame>
            <second_frame>  L  D  S  R  L  E  S  L  G  R  I  G  *  I  *  G  E  R  D  *  D  E  F  H  T  *  G  K  A  *  I  M  S  F  M  G  F  *  *  W  S  T  N  C  *  N  R  S  Y  D  V  P  T  L  W  A  C  S  R  F  F  Y  N  T  Y  W  Y  S  S  L  C  S  S  *  V  C  T  T  A  C  Q  N  K  G  C  *  C  I  S  L  G  F  P  I  Y  D  *  I  T  R  F  K  I  C  G  W  *  G  S  T  K  D  F  A  S  E  S  *  N  K  R  R  L  E  P  S  T  S  D  R  T  Q  Y  L  L  *  N  A  M  G  N  S  S  Q  V  *  W  F  A  F  K  V  *  *  *  H  A  C :   *  W  I  F  E  M  *  E  V  D  A  E  *  H  C  *  Y  S  R  V  E  N  I  L  M  V  *  S  I  H  W  T  C  K  E  A  R  G  D  M  A  F  P  I  C  G  G  *  D  V  C  S  N  Y  S  C  W  Y  *  W  L  P  Y  Q  C  W  W  A  A  C  D  F  I  S  I  S  N   : W  L  H  T  G  R  C  Y  R  V  G  N  Q  R  *  R  R  Y  T  F  G  L  C  Y  I  S  S  N  L  S  S  K  F  F  S  P  K  S  V  G  F  L  R  E  V  E  I  S  S  F  T  Q  E  S  H  S  T  F  H  W  G  A  F  C  H  Q  S  L  C  *  A  Y  G  N  Q  E  N  M  D  A  G  F  S  N  Q  I  L  R  H  S  S  P  L  L  C  C  F   : E  S  T  K  G  A  K  C  Y  I  E  E  G  S  R  L  L  W  G  H  C  D  C  P  L  Y  R  *  I  R  A  S  G  S  *  N  Y  C  H  L  Q  V  W   : G  S  E  C  D  S  C  I  Y  H  E  M  *  R  *  Y  F  H  *  D  R  C  S  P  *  R  N  S  T  C  P  S  *  T  I  S  L  H  G  Q  S  *  S  L  A  *  T  T  S  N  R  K  V  G  S  N  F  *   : G  V  A  R  R  C  I  P  P  L  C  *  W  T  R  I  Y  N  Y  K  *  Y  C  Q  T  Y  H  F  S  I  S  E  P  K  L  A   : D  L  Q  N  G  G  C  E  H  G  Y  V  G  *  E  L  Q  Q  F  N  S  C  T  V  L  S  Q  L  E  V  L  S  I  W  V  Y  G  R  L  F  H  G  S  L  S  V  S  T  T  D  V  L  S  V  E  Q  F  T  Q  G  *  G  P  L  L  Q  L  L  E  *  Y  D  H  F  S  L  L  D  G  R  T  I  *  I  A  S  S  S  S  C  L  E  I  L  R  E  E  M  K  V  C  V  V  V  S  V  Q  M  A  V  L  A  *  H  M  I  *  H  G  T  L  A  I  A  M  D  L  Y  I  R  I  Y  I  L  C  T  S  H  C  I  G  F  M   </second_frame>
            <third_frame>   W  T  L  G  S  K  A  W  E  E  L  D  K  Y  E  E  K  G  I  E  M  N  S  I  L  E  G  K  P  E  S  C  P  S  W  V  S  S  S  G  A  Q  I  A  K  T  D  H  M  M  F  L  P  C  G  L  A  A  G  S  S  I  T  L  I  G  T  P  R  Y  A  H  H  E  Y  V  P  Q  L  A  K  I  R  A  A  D  A  L  V  L  V  S  Q  F  M  I  E  L  Q  G  L  K  S  V  V  G  E  D  P  P  K  I  L  H  L  N  P  R  I  R  G  D  W  S  R  R  P  V  I  E  H  N  T  C  Y  R  M  Q  W  G  T  A  H  R  C  D  G  L  P  S  K  Y  D  D  D  M  L   : V  D  G  Y  L  R  C  E  K  W  M  R  N  D  I  V  D  T  R  E  S  K  I  F  S  W  F  D  R  F  I  G  R  A  K  K  P  E  V  T  W  P  F  P  F  V  E  G  R  M  F  V  L  T  I  R  A  G  I  D  G  Y  H  I  N  V  G  G  R  H  V  T  S  F  P  Y  R  T  :  G  F  T  L  E  D  A  T  G  L  A  I  R  G  D  V  D  I  H  S  V  Y  A  T  S  L  P  T  S  H  P  S  F  S  P  Q  R  V  L  D  F  S  E  K  W  K  S  L  P  L  P  K  N  R  I  Q  L  F  I  G  V  L  S  A  T  N  H  F  A  E  R  M  A  I  R  K  T  W  M  Q  A  S  A  I  K  S  S  D  I  A  V  R  F  F  V  A  L  :  N  P  R  K  E  L  N  A  I  L  K  K  E  A  D  Y  F  G  D  I  V  I  V  P  F  I  D  R  Y  E  L  V  V  L  K  T  I  A  I  C  K  Y  G  :  V  Q  N  V  T  A  A  Y  I  M  K  C  D  D  D  T  F  I  R  I  D  A  V  L  R  E  I  Q  R  V  P  P  R  R  S  L  Y  M  G  N  L  N  L  L  H  R  P  L  R  T  G  K  W  A  V  T  F  E  :  E  W  P  E  D  V  Y  P  P  Y  A  N  G  P  G  Y  I  I  T  S  D  I  A  K  H  I  T  S  Q  Y  R  N  Q  S  L  R  :  I  F  K  M  E  D  V  S  M  G  M  W  V  E  S  Y  N  S  S  T  P  V  Q  Y  S  H  N  W  K  F  C  Q  Y  G  C  M  E  D  Y  F  T  A  H  Y  Q  S  P  R  Q  M  F  C  L  W  N  N  L  L  K  G  K  A  H  C  C  N  F  *  S  D  M  T  I  F  R  C  L  M  D  A  Q  F  E  L  H  H  L  L  P  A  L  R  S  Y  A  K  K  *  R  C  V  L  L  Y  L  F  R  W  L  F  *  L  N  I  *  F  N  M  E  H  W  P  S  R  W  I  C  T  S  G  F  I  Y  C  V  L  V  I  V  *  D  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79044" stop="78573"/>
                    <exon start="75756" stop="75524"/>
                    <exon start="75063" stop="74773"/>
                    <exon start="73066" stop="72938"/>
                    <exon start="72842" stop="72669"/>
                    <exon start="72563" stop="72456"/>
                    <exon start="72361" stop="72158"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTLGSKAWEELDKYEEKGIEMNSILEGKPESCPSWVSSSGAQIAKTDHMMFLPCGLAAGSSITLIGTPRYAHHEYVPQLAKIRAADALVLVSQFMIELQGLKSVVGEDPPKILHLNPRIRGDWSRRPVIEHNTCYRMQWGTAHRCDGLPSKYDDDMLVDGYLRCEKWMRNDIVDTRESKIFSWFDRFIGRAKKPEVTWPFPFVEGRMFVLTIRAGIDGYHINVGGRHVTSFPYRTGFTLEDATGLAIRGDVDIHSVYATSLPTSHPSFSPQRVLDFSEKWKSLPLPKNRIQLFIGVLSATNHFAERMAIRKTWMQASAIKSSDIAVRFFVALNPRKELNAILKKEADYFGDIVIVPFIDRYELVVLKTIAICKYGVQNVTAAYIMKCDDDTFIRIDAVLREIQRVPPRRSLYMGNLNLLHRPLRTGKWAVTFEEWPEDVYPPYANGPGYIITSDIAKHITSQYRNQSLRIFKMEDVSMGMWVESYNSSTPVQYSHNWKFCQYGCMEDYFTAHYQSPRQMFCLWNNLLKGKAHCCNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="79829" PGL_stop="79056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79829" e_stop="79056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="79829" e_stop="79056" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79829" stop="79056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTCTCTGTCAACTGCTGCTTCATCGTGTATCCAAAATCTACGTTACTAGGGTTTTTCTCCCTATCCCTCCTACCTAAAGATTGGGGTTTTCCCCCCCCAGCCATTTGTAGGGCATTCTGCAGCTTTGGTTTTGCCAATTTCTTCAGGATTTCCAAGGGATATGGTGCAATGCTGGGCAATTTGAGGTCAGGTAACAGGTAACTTGTTTGATCGATCATTAGCTAGGTGGGTTTCGGCTCTCAGTGTTGTATTTATGATTTGTTGTGTTTACCCATTGAGAGCTTGGTGTTGCTGACATTGGGTCTTAAGATTTTGATGTTGTTGTGGTTACCAGAGACGATGAAGTGGTGGGGGTTATAGGGGTTGTTTTCTGTGCTGATTAGTTTGGGATATATATATAATGATGAAAAGGTTGAAAAATGAAGCTTCCAGTGTGAGGAGGTTTAAATTGTCTTATGTTTTACTGGGTTTAGCTGCATTTTACTTGGTTCTTATCTGTGTGAAGTTTCCGGAGTTTCTTGAGAGCGCGACAGTTTTGAGTGGTGATGATGCTGATGTAGCTCTAGATGTGGAGGATGATAGTGGAGAATCCATTTCTGTGTTTCATAATAGTGTAAGGGAATATTCTCAAGTGAAATCACAAGAAGAGGATAATGAAGATGAAGCTTCTCCCCATAAAAAGCCTCCTAAGCTTCACTATGGTCGAATTACTGCAGCTATTTTGAAAAGGCAGAATATGGAGCGAAATCTGTCTATTTTGGATAGTATGG</gDNA_template>
            <first_frame> S  S  L  C  Q  L  L  L  H  R  V  S  K  I  Y  V  T  R  V  F  L  P  I  P  P  T  *  R  L  G  F  S  P  P  S  H  L  *  G  I  L  Q  L  W  F  C  Q  F  L  Q  D  F  Q  G  I  W  C  N  A  G  Q  F  E  V  R  *  Q  V  T  C  L  I  D  H  *  L  G  G  F  R  L  S  V  L  Y  L  *  F  V  V  F  T  H  *  E  L  G  V  A  D  I  G  S  *  D  F  D  V  V  V  V  T  R  D  D  E  V  V  G  V  I  G  V  V  F  C  A  D  *  F  G  I  Y  I  *  *  *  K  G  *  K  M  K  L  P  V  *  G  G  L  N  C  L  M  F  Y  W  V  *  L  H  F  T  W  F  L  S  V  *  S  F  R  S  F  L  R  A  R  Q  F  *  V  V  M  M  L  M  *  L  *  M  W  R  M  I  V  E  N  P  F  L  C  F  I  I  V  *  G  N  I  L  K  *  N  H  K  K  R  I  M  K  M  K  L  L  P  I  K  S  L  L  S  F  T  M  V  E  L  L  Q  L  F  *  K  G  R  I  W  S  E  I  C  L  F  W  I  V  W </first_frame>
            <second_frame>  L  L  S  V  N  C  C  F  I  V  Y  P  K  S  T  L  L  G  F  F  S  L  S  L  L  P  K  D  W  G  F  P  P  P  A  I  C  R  A  F  C  S  F  G  F  A  N  F  F  R  I  S  K  G  Y  G  A  M  L  G  N  L  R  S  G  N  R  *  L  V  *  S  I  I  S  *  V  G  F  G  S  Q  C  C  I  Y  D  L  L  C  L  P  I  E  S  L  V  L  L  T  L  G  L  K  I  L  M  L  L  W  L  P  E  T  M  K  W  W  G  L  *  G  L  F  S  V  L  I  S  L  G  Y  I  Y  N  D  E  K  V  E  K  *  S  F  Q  C  E  E  V  *  I  V  L  C  F  T  G  F  S  C  I  L  L  G  S  Y  L  C  E  V  S  G  V  S  *  E  R  D  S  F  E  W  *  *  C  *  C  S  S  R  C  G  G  *  *  W  R  I  H  F  C  V  S  *  *  C  K  G  I  F  S  S  E  I  T  R  R  G  *  *  R  *  S  F  S  P  *  K  A  S  *  A  S  L  W  S  N  Y  C  S  Y  F  E  K  A  E  Y  G  A  K  S  V  Y  F  G  *  Y   </second_frame>
            <third_frame>   F  S  L  S  T  A  A  S  S  C  I  Q  N  L  R  Y  *  G  F  S  P  Y  P  S  Y  L  K  I  G  V  F  P  P  Q  P  F  V  G  H  S  A  A  L  V  L  P  I  S  S  G  F  P  R  D  M  V  Q  C  W  A  I  *  G  Q  V  T  G  N  L  F  D  R  S  L  A  R  W  V  S  A  L  S  V  V  F  M  I  C  C  V  Y  P  L  R  A  W  C  C  *  H  W  V  L  R  F  *  C  C  C  G  Y  Q  R  R  *  S  G  G  G  Y  R  G  C  F  L  C  *  L  V  W  D  I  Y  I  M  M  K  R  L  K  N  E  A  S  S  V  R  R  F  K  L  S  Y  V  L  L  G  L  A  A  F  Y  L  V  L  I  C  V  K  F  P  E  F  L  E  S  A  T  V  L  S  G  D  D  A  D  V  A  L  D  V  E  D  D  S  G  E  S  I  S  V  F  H  N  S  V  R  E  Y  S  Q  V  K  S  Q  E  E  D  N  E  D  E  A  S  P  H  K  K  P  P  K  L  H  Y  G  R  I  T  A  A  I  L  K  R  Q  N  M  E  R  N  L  S  I  L  D  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79446" stop="79057"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVWDIYIMMKRLKNEASSVRRFKLSYVLLGLAAFYLVLICVKFPEFLESATVLSGDDADVALDVEDDSGESISVFHNSVREYSQVKSQEEDNEDEASPHKKPPKLHYGRITAAILKRQNMERNLSILDSM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79828" stop="79625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSVNCCFIVYPKSTLLGFFSLSLLPKDWGFPPPAICRAFCSFGFANFFRISKGYGAMLGNLRSGNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="84599" PGL_stop="84739"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84599" e_stop="84739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84599" e_stop="84739" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84599" stop="84739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTACTTTAGTACATAATATTAATTCATGAACATTATTATAAGCAGTACATCAAACGGAATGGTTTAAAAAAAAAGAGCAATTAAAAGAAAACAAATGTTTATTCAGTAAGGTATATAATAAATTAGGAATAAGCATCATT</gDNA_template>
            <first_frame> S  T  L  V  H  N  I  N  S  *  T  L  L  *  A  V  H  Q  T  E  W  F  K  K  K  E  Q  L  K  E  N  K  C  L  F  S  K  V  Y  N  K  L  G  I  S  I  I </first_frame>
            <second_frame>  V  L  *  Y  I  I  L  I  H  E  H  Y  Y  K  Q  Y  I  K  R  N  G  L  K  K  K  S  N  *  K  K  T  N  V  Y  S  V  R  Y  I  I  N  *  E  *  A  S   </second_frame>
            <third_frame>   Y  F  S  T  *  Y  *  F  M  N  I  I  I  S  S  T  S  N  G  M  V  *  K  K  R  A  I  K  R  K  Q  M  F  I  Q  *  G  I  *  *  I  R  N  K  H  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0064G08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="87186" PGL_stop="84888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87186" e_stop="86793"/>
            <exon e_start="85976" e_stop="85842"/>
            <exon e_start="85731" e_stop="85654"/>
            <exon e_start="84997" e_stop="84888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.997"/>
          <exon-intron don_prob="0.957" acc_prob="0.986" e_score="0.993"/>
          <exon-intron don_prob="0.950" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="87186" e_stop="86793" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86792" i_stop="85977" i_length="816"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="85976" e_stop="85842" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85841" i_stop="85732" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85731" e_stop="85654" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85653" i_stop="84998" i_length="656"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="84997" e_stop="84888" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87186" stop="86793"/>
              <exon start="85976" stop="85842"/>
              <exon start="85731" stop="85654"/>
              <exon start="84997" stop="84888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586604" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCACACAATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACAAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATTATCATAAAGCTAAGGCTGATTTTATATCATTGAATTCAGCTGAGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAA : AGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAGTGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAAACACTTATTTACCAG : GGAGAATACAATAACGCCCTACGTTGCAAATGTTTAGACGAAAAATTAATTACCGATGCAAGGCGTCCACTTTATAAG : GCTATAATATACATCTCACTTGGGAGCCGTAGAAATGAAGAAGAAGCCGTAAATTACTGGAAAGAATTCAGACAAATTAAAGAAGATTTTAAAAGACCAGGCAAAGTAAA</gDNA_template>
            <first_frame> S  H  T  I  Y  S  K  Y  D  Q  R  S  F  S  N  E  F  N  T  T  N  I  R  F  H  *  F  S  E  N  K  I  N  R  S  R  G  T  T  R  *  T  F  I  N  N  N  F  N  V  I  I  C  V  L  Y  I  N  I  F  F  R  S  F  M  E  E  E  K  K  *  K  I  E  K  S  I  N  K  I  N  V  N  W  T  F  T  W  R  *  I  G  S  K  K  V  N  *  L  S  *  S  *  G  *  F  Y  I  I  E  F  S  *  D  R  S  *  C  F  A  Q  *  G  A  T  P  F  Q  E  T  T   : K  V  Y  C  K  D  G  N  E  W  K  R  K  P  S  S  E  E  I  R  E  C  N  K  K  C  *  T  T  *  S  L  *  V  *  N  A  T  C  G  N  T  Y  L  P   : G  R  I  Q  *  R  P  T  L  Q  M  F  R  R  K  I  N  Y  R  C  K  A  S  T  L  *   : G  Y  N  I  H  L  T  W  E  P  *  K  *  R  R  S  R  K  L  L  E  R  I  Q  T  N  *  R  R  F  *  K  T  R  Q  S  K </first_frame>
            <second_frame>  V  T  Q  F  I  A  N  M  I  N  D  H  F  L  M  S  L  I  Q  Q  T  S  D  F  I  D  L  V  K  T  K  S  I  E  V  V  A  Q  H  D  E  R  L  L  I  T  I  L  M  L  L  F  V  C  Y  I  L  I  F  F  S  G  R  L  W  K  K  R  K  N  K  K  L  K  K  V  L  T  R  S  M  S  I  G  L  L  H  G  G  E  L  A  L  K  R  L  I  D  Y  H  K  A  K  A  D  F  I  S  L  N  S  A  E  T  D  L  D  A  L  L  N  E  E  Q  P  H  F  K  K  L  Q  :  R  C  I  A  K  M  E  M  S  G  K  E  S  Q  A  V  R  K  L  E  N  A  I  K  N  A  E  P  H  K  A  Y  E  F  E  M  Q  L  V  E  T  L  I  Y  Q  :  G  E  Y  N  N  A  L  R  C  K  C  L  D  E  K  L  I  T  D  A  R  R  P  L  Y  K  :  A  I  I  Y  I  S  L  G  S  R  R  N  E  E  E  A  V  N  Y  W  K  E  F  R  Q  I  K  E  D  F  K  R  P  G  K  V   </second_frame>
            <third_frame>   S  H  N  L  *  Q  I  *  S  T  I  I  F  *  *  V  *  Y  N  K  H  Q  I  S  L  I  *  *  K  Q  N  Q  S  K  S  W  H  N  T  M  N  V  Y  *  *  Q  F  *  C  Y  Y  L  C  V  I  Y  *  Y  F  F  Q  V  V  Y  G  R  R  E  K  I  K  N  *  K  K  Y  *  Q  D  Q  C  Q  L  D  F  Y  M  E  V  N  W  L  *  K  G  *  L  I  I  I  K  L  R  L  I  L  Y  H  *  I  Q  L  R  Q  I  L  M  L  C  S  M  R  S  N  P  I  S  R  N  Y  K :   G  V  L  Q  R  W  K  *  V  E  K  K  A  K  Q  *  G  N  *  R  M  Q  *  K  M  L  N  H  I  K  L  M  S  L  K  C  N  L  W  K  H  L  F  T  R :   E  N  T  I  T  P  Y  V  A  N  V  *  T  K  N  *  L  P  M  Q  G  V  H  F  I  R :   L  *  Y  T  S  H  L  G  A  V  E  M  K  K  K  P  *  I  T  G  K  N  S  D  K  L  K  K  I  L  K  D  Q  A  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87185" stop="86793"/>
                    <exon start="85976" stop="85842"/>
                    <exon start="85731" stop="85654"/>
                    <exon start="84997" stop="84890"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTQFIANMINDHFLMSLIQQTSDFIDLVKTKSIEVVAQHDERLLITILMLLFVCYILIFFSGRLWKKRKNKKLKKVLTRSMSIGLLHGGELALKRLIDYHKAKADFISLNSAETDLDALLNEEQPHFKKLQRCIAKMEMSGKESQAVRKLENAIKNAEPHKAYEFEMQLVETLIYQGEYNNALRCKCLDEKLITDARRPLYKAIIYISLGSRRNEEEAVNYWKEFRQIKEDFKRPGKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 30 chains have been computed
$ 
$ memory statistics:
$ 95704 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 4161 bytes was the average size of a spliced alignment
$ 22696 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1621 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:34:28
-->
