<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:39:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552347" ref_strand="-" ref_description="SGN-E552347 [cTSB-3-K1]">
      <seq>tgatcattgtggttaagcatttgtttagactctgtcacagtagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttcaccctgggtgccccaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2152" stop="7091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2452" g_stop="2732" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="334" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="401" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="458" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6788" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="784" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="796"/>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E552347" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552347" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2452" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTGTGGTTAAGCATTTGTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</genome_strand>
        <mrna_strand>TGATCATTGTGGTTAAGCATTTGTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325910" ref_strand="+" ref_description="SGN-E325910 [cTOC-12-C12]">
      <seq>acagtagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcangctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2188" stop="6945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2488" g_stop="2732" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="298" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="365" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5928" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5929" g_stop="5978" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="415" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6645" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="598" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E325910" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2488" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5929" e_stop="5978"/>
          <exon e_start="6463" e_stop="6645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</genome_strand>
        <mrna_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG................................................................................GTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCANGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324534" ref_strand="+" ref_description="SGN-E324534 [cTOC-9-I24]">
      <seq>acagtagaagaagctgcactccccactggtgactaaccagcaacgttagggttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaagattttattttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2188" stop="6853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2488" g_stop="2732" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="298" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="365" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5928" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5929" g_stop="5978" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="415" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6553" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="506" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E324534" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2488" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5929" e_stop="5978"/>
          <exon e_start="6463" e_stop="6553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCT</genome_strand>
        <mrna_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTGACTAACCAGCAACGTTAGGGTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG................................................................................GTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAAGATTTTATTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538813" ref_strand="+" ref_description="SGN-E538813 [TUS-58-D24]">
      <seq>tagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2192" stop="7065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2492" g_stop="2732" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="294" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6773" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="729" r_length="311" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E538813" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2492" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCA</genome_strand>
        <mrna_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538810" ref_strand="+" ref_description="SGN-E538810 [TUS-58-D24](-)">
      <seq>tagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttttcaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2192" stop="7065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2492" g_stop="2732" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="294" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6757" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="713" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="738"/>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E538810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2492" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCA</genome_strand>
        <mrna_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302806" ref_strand="+" ref_description="SGN-E302806 [cLEY-2-I5]">
      <seq>tagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaagttggttccttggtctaatagtctgagttacattcatctactttgtaacttaaccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2192" stop="6965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2492" g_stop="2732" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="294" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6665" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="621" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E302806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2492" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTT</genome_strand>
        <mrna_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAAGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275841" ref_strand="+" ref_description="SGN-E275841 [cLEN-18-B14]">
      <seq>agaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2193" stop="6946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2493" g_stop="2732" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="293" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="360" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="417" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6646" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="601" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E275841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2493" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTAC</genome_strand>
        <mrna_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276567" ref_strand="+" ref_description="SGN-E276567 [cLEN-17-F11]">
      <seq>agaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2193" stop="6945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2493" g_stop="2732" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="293" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="360" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="417" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6645" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="600" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E276567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2493" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</genome_strand>
        <mrna_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594760" ref_strand="+" ref_description="SGN-E594760 [38018]">
      <seq>gaagaagctgcactctcctctaaccagcaacgttaggtttttggagaagtaaagaaagcgggagaaatccgccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacggtagagatgaagagtggagagctatacagaggaagtatggtggagtgcgaggataactggaattgccaactggagagcattacgtacacagctaaagatgggagagtgtcacaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcgggggcgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaaggaagatgattgctcgatgcgggattttattctatctggtttagcaaccgtaaaaaattcagtgtaagaatgttggagtagattcctaaggttggtccttggtctcaatagtctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2218" stop="6932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2494" g_stop="2732" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="285" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="352" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="409" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6632" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="581" r_length="172" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E594760" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2494" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAA-GAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGT-AAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCT-AATAGTCTGAG</genome_strand>
        <mrna_strand>GAAGAAGCTGCACT-CTC-C---TC--TAACCAGCAACGTTAGGTTTTTGGAGAAGTAAAGAAAGCGGGAGAAATCCGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACGGTAGAGATGAAGAGTGGAGAGCTATACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTGGAGAGCATTACGTACACAGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCACAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGGCGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGGAAGATGATTGCTCGATGCGGGATTTTATTCTATCTGGTTTAGCAACCGTAAAAAATTCAGTGTAAGAATGTTGGAGTAGATTCCTAAGGTTGG-TCCTTGGTCTCAATAGTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353689" ref_strand="+" ref_description="SGN-E353689 [cTOS-10-H10]">
      <seq>aagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcangattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttgggtctatagtctgangtacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2198" stop="7027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2498" g_stop="2732" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="288" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="355" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="412" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6727" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="677" r_length="265" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E353689" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2498" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTT-GGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTT</genome_strand>
        <mrna_strand>AAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCANGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGGTCT-ATAGTCTGANGTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570987" ref_strand="+" ref_description="SGN-E570987 [15657]">
      <seq>ctgcactctcctctaaccagcaacgttaggtttttggagaagtaaagaaagcgggagaaatccgccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacggtagagatgaagagtggagagctatacagaggaagtatggtggagtgcgaggataactggaattgccaactggagagcattacgtacacagctaaagatgggagagtgtcacatctagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcgggggcgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgctcgatgcgggattttattctatctggtttagcaaaccgtaaaaattccagtgtaaagaatgttggagtagattcctaagggttggtccttgggtctaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2218" stop="6927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2508" g_stop="2732" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="278" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="345" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="402" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6627" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="571" r_length="169" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E570987" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2508" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGC-AATCGTAAAAATT-CAGTGT-AAGAATGTTGGAGTAGATTTCTAA-GGTTGGTTCCTTGGTCTAATAGT</genome_strand>
        <mrna_strand>CTGCACTCTCCTCTAACCAGCAACGTTAGGTTTTTGGAGAAGTAAAGAAAGCGGGAGAAATCCGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACGGTAGAGATGAAGAGTGGAGAGCTATACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTGGAGAGCATTACGTACACAGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCACATCTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGGCGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTCGATGCGGGATTTTATTCTATCTGGTTTAGCAAACCGTAAAAATTCCAGTGTAAAGAATGTTGGAGTAGATTCCTAAGGGTTGGTCCTTGGGTCTAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620510" ref_strand="+" ref_description="SGN-E620510 [71212]">
      <seq>tctaaccagcaacgttaggtttttggagaagtaaagaaagcgggagaaatccgccatgagtcggagcgtgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacggtagagatgaagagtggagagctatacagaggaagtatggtggagtgcgaggataactggaattgccaactggagagcattacgtacacagctaaagatgggagagtgtcacaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcgggggcgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgctcgatgcgggattttattctatctggtttagcaaccgtaaaaattcagtgtaagaatgttggagtagattcctaaggttggtccttggtctaatagtctgagtcacattcgtctactttgtaatttaacctttttcacacacgacttaagaaggctggaatatgagtgcttttcaaattgcctctgtgcttgtacttcgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2220" stop="7033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2519" g_stop="2732" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="334" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="391" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6733" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="661" r_length="270" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E620510" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2519" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTG</genome_strand>
        <mrna_strand>TCTAACCAGCAACGTTAGGTTTTTGGAGAAGTAAAGAAAGCGGGAGAAATCCGCCATGAGTCGGAGCGTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACGGTAGAGATGAAGAGTGGAGAGCTATACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTGGAGAGCATTACGTACACAGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCACAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGGCGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTCGATGCGGGATTTTATTCTATCTGGTTTAGCAACCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTCCTAAGGTTGG-TCCTTGGTCTAATAGTCTGAGTCACATTCGTCTACTTTGTAATTTAACCTTTTTCACACACGACTTAAGAAGGCTGGAATATGAGTGCTTTTCAAATTGCCTCTGTGCTTGTACTTCGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286609" ref_strand="+" ref_description="SGN-E286609 [cLES-12-I10]">
      <seq>ggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2378" stop="6996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2678" g_stop="2732" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="108" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="175" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="232" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6696" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="466" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E286609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2678" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAG</genome_strand>
        <mrna_strand>GGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222086" ref_strand="+" ref_description="SGN-E222086 [cLEL-36-M12](-)">
      <seq>tgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="5502" stop="12341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5802" g_stop="5848" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="104" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6463" g_stop="6743" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="385" r_length="281" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E222086" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5802" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAA</genome_strand>
        <mrna_strand>TGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308307" ref_strand="+" ref_description="SGN-E308307 [cLEZ-6-G23](-)">
      <seq>ctaaagctcaggcagctggtcgtggagcaccacctggtcggggaactgtgccacctgtaagaaaatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtcaaatagtttgagttacattcatctactttgtaaattaacctttttcacatacgactagagaatgctggaaaatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="6161" stop="12341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6388" g_stop="6392" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6393" i_stop="6462" i_length="70">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6463" g_stop="6773" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="316" r_length="311" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6774" i_stop="7191" i_length="418">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.445" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7192" g_stop="7211" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="336" r_length="20" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E308307" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6388" e_stop="6392"/>
          <exon e_start="6463" e_stop="6773"/>
          <exon e_start="7192" e_stop="7211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAAGCATGTCATTGCGCCTGTCTTTTTAATGCTTGATGTGGGCCTTTTGAGCTCACAAAAGGAATACTCTGTTTGCTTGGGAAGGCATGTTTTATTTTTGCTTGTTGGAGGATCCGTATACTATCTATTGCACTTCAGAAGCCTACTTTTGCATTGTTAAGCTAACGTGTGCTTGGAACTGAAGAGTGTTGAAAGTGCCATTCTTTTTCTTGTTTCTTTTTGAGGTGAGGTAATGAGTCTTAATTACAATCAAAAACATATATTTGGTTAGTTATCGATTCATTACATCTGCATCTCAAGTTCTGGGATCAAGAGTTTCTGCTGTTCATTTAGAATCACAAGGAGGCTAAACATTTTATACTTAGTTATTTGGTCATGTATGCTAGTAATGCAGTACTCTAATTAGGAGGAGAATAAGTGAATAAA</genome_strand>
        <mrna_strand>CTAAA......................................................................GCTCAGGCAGCTGGTCGTGGAGCACCACCTGGTCGGGGAACTGTGCCACCTGTAAGAAAATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCAAATAGTTTGAGTTACATTCATCTACTTTGTAAATTAACCTTTTTCACATACGACTAGAGAATGCTGGAAAATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538776" ref_strand="+" ref_description="SGN-E538776 [TUS-58-D4](-)">
      <seq>ctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtatgagttacattcatctactttgtaacttaacctttttcacatccgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="6191" stop="7031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6491" g_stop="6731" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E538776" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6491" e_stop="6731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACC</genome_strand>
        <mrna_strand>CTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTATGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATCCGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341968" ref_strand="+" ref_description="SGN-E341968 [cTOF-10-G15]">
      <seq>aatattaataatttctctttctaaaacaacaacaaaatgggtttaaagaaaacaagtagcagcaaacaacaaacagcagctttgaaacaaatgatcaaaagatgttctagttttggaaaaaatgagaataatggtttcccacatgatgttccaaaaggacattttgttgtgtacgttggagaaaatagaagtagatatataatacctatttcttggttaacatatcctcaatttcaaaatttgcttcaaagagctgaagaagaatttggatttagtcatgatatgggcattactattccttgtcatgaacatgatttttgttcacttatttcaatgtttagatgaaacaacaaaatataatcttcctttttccttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="12251" stop="11275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11951" g_stop="11575" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="388"/>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E341968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11951" e_stop="11575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</genome_strand>
        <mrna_strand>AATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379962" ref_strand="+" ref_description="SGN-E379962 [TUS-3-B12](-)">
      <seq>cgggccccccctcgagactagttctctcgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaangaaacttctagtcagaggcagagagctgcagaaaatgagcaggagctttgtcgtgttaagaccgactttgagtctctaaaatcctatgtcagtaatctcgttagtgtgagagaaacaattctatcatcagaaaagcaattccagacaattgaaaggctttttgagcggctggtcgccaagtcaacacacctggagagtgagaagacgcagaaagaggctgaagtagaaaagctgatggaagaaaatgtgaggttgactgctctgcttgataagaaagaggcacagcttttggctatgaatgaacagtgcaaagttatggcgttaagtgcttcaaatatttagttcagtgtgtttagaccctttgcttcttttcgtgtttaatgtcacctgcttaaaaaggtgaagactgcaaaaccttatatccagtttatgcaactctgagtgtctcattgataaaatgcatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="28300" stop="25198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28000" g_stop="27743" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="287" r_length="259" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27742" i_stop="25799" i_length="1944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25798" g_stop="25498" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="588" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E379962" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28000" e_stop="27743"/>
          <exon e_start="25798" e_stop="25498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAA-GAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCGGTAAGTGAATCCCTTTTGTCAAAAAATTTCCATTAACCATAACATGTGCACTGAACTTTTTCTTTTTTTCCTGGCTATACAATGTGTCTGATGCATGAAGTTAAATGTTAAATATATCCTTTTGCCTCACTTTCATAGCACTATATTTTAATACTTGCCATACAACTTGTAACTAGAATACAAGTGTCCAAGCACAACTTCTTCCTGTGTGATCGAATAATACTTGCCTTGCAGCTTGTGTATAATAGTCGCAATACAAATGCACAAGTCTAATGTGTATTTTTGGTAAAATGTTGCGATAGCTCCACTACATTACTACCTTGTTTCTCTGGTCTGGCTGTTTTTTTGTGTATAAAATATTGCTTTTAGGAATTAGAAGTAGTATATATATGTATTTCACCTTAAGGCAGCTATTGATTTAAAGGGAGTGCCAGCATAGATAATTAGATACTCATAGTTGTTCAAGTGTTCTAAACTTTTCTTTTTCTTTGAGTGTGGTTGATTTAGATTATTAATACCATGCTGGACTCTTGACAAGCTTAGTGCTGTAACGTCCCTTTTAAGCTATTGGACTGTTGTAGGATCTTGTTCTTGTAAAGATTTAGGCCACCATATTTCTCTTTTTTATTATTTCCAGGCTTGGGGTGGGATGGGGGATCATTTGAATCTTAACAGTGTTGATCATTGTTCACTGCTAAGGGCTGGGACCATTTGAAATTAACAATGCATTGTTTACATGATATTACAGGGATAACAGAACCAAAAAGGGGAAAAAATCCAAATTGTTGCTTATGGAGTTAATGTTTATTTTATTTTGGTATGTGCTTTGTTGCACTGACTCCCAGATGTAAGACAGATATACCATCTGAGAACTCTACAAGGGGTGAGAAATTAGGGAAAAGATAAAGAAGTGATTGGGAAAGTTTGATTATTCCGTCAAGTTTGGTTGAGAATTTATATTAGTTATTACTAACTTACAATACGGTAAGGTACTGATTCTAGGGAACAAAACATCTCTAAATTTTTGGTTGATGTCTCATTTTATGGTTTTAGACAATTCTCAGCGATGAGCTTGCTTTTGAGGTTGAGCTAAGGTTGAAGGTCCACTTTTTTTAATAGAAATATTTGTGAGAAGTTAGAACAAATAGTCGAAGGTGCAGAGGTTAGAGCCTTTACTCTATATGAAGTGCATCTGCTCTACATTGGCCAAAGAACACAAAATTAAAATAATTTCTCTATTTTTCATAAACTTGCAGGGTAAAATATAAAGTCCCTAATTTTGTTTTTATTTTTTTGTATACGAATAAAAGCATATCAGTCCAGAAACTAAAGAATCTCAAAGTATGAAATAAAACTTGATGATACCAGAATGAAATAATTGAGAATAAACTCGGAAGGTTTTACTGCTAGTTTTTAACACCTTAATCCAATATAAGGCAATAATGAGTATCAAGTTCATCAATTTTAAAACCTAGCTCTCTCAAACTTTTATTAATAGAAAAGGTTGTATTCTCTATCTCTAATGGCATAAATTTGTTCTTTTCTTTTGAGAATGAAGTCGAACAATCTTTTTCTAATTGATAATTAATTGAGATTAGAACTTTTGAGATGCTATATATTTGAAATGATAGCTTCAGTTGCAATATCCTCCATTTCATTACTCTCTTGCTCAACCCAACTAGCATCTTAAATTCGTTGGTAGTTGTACGACCAAGTAACATAGTAGTACAGAACATAAAGAAAGCGTGAACTTTGATGAAGTTTCATCTGATTTGAATTGAGCTAACACAAGGTTTAAACTTTCTGCTCCTTATTTCTGCTGTTCTCAGGCTAAATTTTCTTATATCCGAATTGGCACGAAATGTTTAAGCTGTAATAATTTGATCAACTGATATTTCATCATGCGGAAAAATTGTGTGCTGAGTTTGTTTTATGTGAAACCAGGCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAGGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAAGTGCTTCAAATATTTAGTTCAGTGTGTTTAGACCCTTTGCTTCTTTTCGTGTTTAATGTCACCTGCTTAAAAAGGTGAAGACTGCAAAACCTTATATCCAGTTTATGCAACTCTGAGTGTCTCATTGATAAAATGCATATTTA</genome_strand>
        <mrna_strand>GTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAANGAAACTTCTAGTCAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGCCAAGTCAACACACCTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAGCTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAGGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAAGTGCTTCAAATATTTAGTTCAGTGTGTTTAGACCCTTTGCTTCTTTTCGTGTTTAATGTCACCTGCTTAAAAAGGTGAAGACTGCAAAACCTTATATCCAGTTTATGCAACTCTGAGTGTCTCATTGATAAAATGCATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357583" ref_strand="+" ref_description="SGN-E357583 [cTOS-23-L22]">
      <seq>ccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatggtataccattatccagttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagacaaggtaacagtaggtgaagaagagattaaaaggaagacgctccttattgaaaacatgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaagaaacttctagacagaggcagagagctgcagaaaatgagcaggagctttgtcgtgttaagaccgactttgagtctctaaaatcctatgtcagtaatctcgttagtgtgagagaaacaattctatcatcagaaaagcaattccagacaattgaaaggctttttgagcggctggtcgccaagtcaacacaactggagagtgagaagacgcagaaagaggctgaagtagaaaaactgatggaagaaaatgtgaggttgactgctctgcttgataagaagaagcacagcttttggctatgaatgaacagtgcaaagttatggcgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="28664" stop="25341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28364" g_stop="27743" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27742" i_stop="25799" i_length="1944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25798" g_stop="25641" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="779" r_length="157" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E357583" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28364" e_stop="27743"/>
          <exon e_start="25798" e_stop="25641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCGGTAAGTGAATCCCTTTTGTCAAAAAATTTCCATTAACCATAACATGTGCACTGAACTTTTTCTTTTTTTCCTGGCTATACAATGTGTCTGATGCATGAAGTTAAATGTTAAATATATCCTTTTGCCTCACTTTCATAGCACTATATTTTAATACTTGCCATACAACTTGTAACTAGAATACAAGTGTCCAAGCACAACTTCTTCCTGTGTGATCGAATAATACTTGCCTTGCAGCTTGTGTATAATAGTCGCAATACAAATGCACAAGTCTAATGTGTATTTTTGGTAAAATGTTGCGATAGCTCCACTACATTACTACCTTGTTTCTCTGGTCTGGCTGTTTTTTTGTGTATAAAATATTGCTTTTAGGAATTAGAAGTAGTATATATATGTATTTCACCTTAAGGCAGCTATTGATTTAAAGGGAGTGCCAGCATAGATAATTAGATACTCATAGTTGTTCAAGTGTTCTAAACTTTTCTTTTTCTTTGAGTGTGGTTGATTTAGATTATTAATACCATGCTGGACTCTTGACAAGCTTAGTGCTGTAACGTCCCTTTTAAGCTATTGGACTGTTGTAGGATCTTGTTCTTGTAAAGATTTAGGCCACCATATTTCTCTTTTTTATTATTTCCAGGCTTGGGGTGGGATGGGGGATCATTTGAATCTTAACAGTGTTGATCATTGTTCACTGCTAAGGGCTGGGACCATTTGAAATTAACAATGCATTGTTTACATGATATTACAGGGATAACAGAACCAAAAAGGGGAAAAAATCCAAATTGTTGCTTATGGAGTTAATGTTTATTTTATTTTGGTATGTGCTTTGTTGCACTGACTCCCAGATGTAAGACAGATATACCATCTGAGAACTCTACAAGGGGTGAGAAATTAGGGAAAAGATAAAGAAGTGATTGGGAAAGTTTGATTATTCCGTCAAGTTTGGTTGAGAATTTATATTAGTTATTACTAACTTACAATACGGTAAGGTACTGATTCTAGGGAACAAAACATCTCTAAATTTTTGGTTGATGTCTCATTTTATGGTTTTAGACAATTCTCAGCGATGAGCTTGCTTTTGAGGTTGAGCTAAGGTTGAAGGTCCACTTTTTTTAATAGAAATATTTGTGAGAAGTTAGAACAAATAGTCGAAGGTGCAGAGGTTAGAGCCTTTACTCTATATGAAGTGCATCTGCTCTACATTGGCCAAAGAACACAAAATTAAAATAATTTCTCTATTTTTCATAAACTTGCAGGGTAAAATATAAAGTCCCTAATTTTGTTTTTATTTTTTTGTATACGAATAAAAGCATATCAGTCCAGAAACTAAAGAATCTCAAAGTATGAAATAAAACTTGATGATACCAGAATGAAATAATTGAGAATAAACTCGGAAGGTTTTACTGCTAGTTTTTAACACCTTAATCCAATATAAGGCAATAATGAGTATCAAGTTCATCAATTTTAAAACCTAGCTCTCTCAAACTTTTATTAATAGAAAAGGTTGTATTCTCTATCTCTAATGGCATAAATTTGTTCTTTTCTTTTGAGAATGAAGTCGAACAATCTTTTTCTAATTGATAATTAATTGAGATTAGAACTTTTGAGATGCTATATATTTGAAATGATAGCTTCAGTTGCAATATCCTCCATTTCATTACTCTCTTGCTCAACCCAACTAGCATCTTAAATTCGTTGGTAGTTGTACGACCAAGTAACATAGTAGTACAGAACATAAAGAAAGCGTGAACTTTGATGAAGTTTCATCTGATTTGAATTGAGCTAACACAAGGTTTAAACTTTCTGCTCCTTATTTCTGCTGTTCTCAGGCTAAATTTTCTTATATCCGAATTGGCACGAAATGTTTAAGCTGTAATAATTTGATCAACTGATATTTCATCATGCGGAAAAATTGTGTGCTGAGTTTGTTTTATGTGAAACCAGGCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAGGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAA</genome_strand>
        <mrna_strand>CCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAG-AAGAAGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345463" ref_strand="+" ref_description="SGN-E345463 [cTOF-13-F10]">
      <seq>aactagatggagtgggtattgttgataaaaatggtataccattatccagttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagacaaggtaacagtaggtgaagaagagattaaaaggaagacgctccttattgaaaacatgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaagaaacttctagacagaggcagagagctgcagaaaatgagcaggagctttgtcgtgttaagaccgactttgagtctctaaaatcctatgtcagtaatctcgttagtgtgagagaaacaattctatcatcagaaaagcaattccagacaattgaaaggctttttgagcggctggtcgccaagtcaacacaactggagagtgagaagacgcaaaaagaggctgaagtagaaaaactgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="28613" stop="25427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28313" g_stop="27743" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27742" i_stop="25799" i_length="1944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25798" g_stop="25727" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="643" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E345463" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28313" e_stop="27743"/>
          <exon e_start="25798" e_stop="25727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCGGTAAGTGAATCCCTTTTGTCAAAAAATTTCCATTAACCATAACATGTGCACTGAACTTTTTCTTTTTTTCCTGGCTATACAATGTGTCTGATGCATGAAGTTAAATGTTAAATATATCCTTTTGCCTCACTTTCATAGCACTATATTTTAATACTTGCCATACAACTTGTAACTAGAATACAAGTGTCCAAGCACAACTTCTTCCTGTGTGATCGAATAATACTTGCCTTGCAGCTTGTGTATAATAGTCGCAATACAAATGCACAAGTCTAATGTGTATTTTTGGTAAAATGTTGCGATAGCTCCACTACATTACTACCTTGTTTCTCTGGTCTGGCTGTTTTTTTGTGTATAAAATATTGCTTTTAGGAATTAGAAGTAGTATATATATGTATTTCACCTTAAGGCAGCTATTGATTTAAAGGGAGTGCCAGCATAGATAATTAGATACTCATAGTTGTTCAAGTGTTCTAAACTTTTCTTTTTCTTTGAGTGTGGTTGATTTAGATTATTAATACCATGCTGGACTCTTGACAAGCTTAGTGCTGTAACGTCCCTTTTAAGCTATTGGACTGTTGTAGGATCTTGTTCTTGTAAAGATTTAGGCCACCATATTTCTCTTTTTTATTATTTCCAGGCTTGGGGTGGGATGGGGGATCATTTGAATCTTAACAGTGTTGATCATTGTTCACTGCTAAGGGCTGGGACCATTTGAAATTAACAATGCATTGTTTACATGATATTACAGGGATAACAGAACCAAAAAGGGGAAAAAATCCAAATTGTTGCTTATGGAGTTAATGTTTATTTTATTTTGGTATGTGCTTTGTTGCACTGACTCCCAGATGTAAGACAGATATACCATCTGAGAACTCTACAAGGGGTGAGAAATTAGGGAAAAGATAAAGAAGTGATTGGGAAAGTTTGATTATTCCGTCAAGTTTGGTTGAGAATTTATATTAGTTATTACTAACTTACAATACGGTAAGGTACTGATTCTAGGGAACAAAACATCTCTAAATTTTTGGTTGATGTCTCATTTTATGGTTTTAGACAATTCTCAGCGATGAGCTTGCTTTTGAGGTTGAGCTAAGGTTGAAGGTCCACTTTTTTTAATAGAAATATTTGTGAGAAGTTAGAACAAATAGTCGAAGGTGCAGAGGTTAGAGCCTTTACTCTATATGAAGTGCATCTGCTCTACATTGGCCAAAGAACACAAAATTAAAATAATTTCTCTATTTTTCATAAACTTGCAGGGTAAAATATAAAGTCCCTAATTTTGTTTTTATTTTTTTGTATACGAATAAAAGCATATCAGTCCAGAAACTAAAGAATCTCAAAGTATGAAATAAAACTTGATGATACCAGAATGAAATAATTGAGAATAAACTCGGAAGGTTTTACTGCTAGTTTTTAACACCTTAATCCAATATAAGGCAATAATGAGTATCAAGTTCATCAATTTTAAAACCTAGCTCTCTCAAACTTTTATTAATAGAAAAGGTTGTATTCTCTATCTCTAATGGCATAAATTTGTTCTTTTCTTTTGAGAATGAAGTCGAACAATCTTTTTCTAATTGATAATTAATTGAGATTAGAACTTTTGAGATGCTATATATTTGAAATGATAGCTTCAGTTGCAATATCCTCCATTTCATTACTCTCTTGCTCAACCCAACTAGCATCTTAAATTCGTTGGTAGTTGTACGACCAAGTAACATAGTAGTACAGAACATAAAGAAAGCGTGAACTTTGATGAAGTTTCATCTGATTTGAATTGAGCTAACACAAGGTTTAAACTTTCTGCTCCTTATTTCTGCTGTTCTCAGGCTAAATTTTCTTATATCCGAATTGGCACGAAATGTTTAAGCTGTAATAATTTGATCAACTGATATTTCATCATGCGGAAAAATTGTGTGCTGAGTTTGTTTTATGTGAAACCAGGCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGA</genome_strand>
        <mrna_strand>AACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAAAAAGAGGCTGAAGTAGAAAAACTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571933" ref_strand="+" ref_description="SGN-E571933 [31008]">
      <seq>aaaagcttctattcaggatcagaagaagatacaaagaaggagttagatgttctatggcatagagtaagaactgctacaacattgatgacgtatttgaaagctaaagccagagtcgtggttgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatgacataccattatccagttggactagggatgttgatctcccatcttttgatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagacaaggtaacagtaggtgaagaagagattaaaaggaagacgctcctgattgaaaacatgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaagaaacttctagacagaggcagagagctgcagaaaatgagcaggagctttgtcgtgttaagacagactttgagtctctgaaatcctatgtcagtagtctcattagtgtgagagaaacaattctatcatcagaaaagcaattccagacaattgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="28771" stop="27455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28471" g_stop="27755" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E571933" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28471" e_stop="27755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAG</genome_strand>
        <mrna_strand>AAAAGCTTCTATTCAGG-ATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTATTTGAAAGCTAAAGCCAGAGTCGTGGTTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGACATACCATTATCCAGTTGGACTAGGGATGTTGATCTCCCATCTTTTGATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTGATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACAGACTTTGAGTCTCTGAAATCCTATGTCAGTAGTCTCATTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308736" ref_strand="+" ref_description="SGN-E308736 [cLEZ-11-M6]">
      <seq>aaagaactagatggagtgggtattgttgataaaaatggtataccattatccacttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagataaggtaacagtaggtgaagaagagattaaaaggaagacgctccttattgaaaacatgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaagaaacttctagacagaagcagagagctgcagaaaatgagcaggagctttgtcgtgttaagaccgactttgagtctctaaaatcctatgtcagtaatctcgttagtgtgagagaaacaattctatcatcagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="28617" stop="27475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28317" g_stop="27775" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E308736" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28317" e_stop="27775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAG</genome_strand>
        <mrna_strand>AAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCACTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGATAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAAGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246342" ref_strand="+" ref_description="SGN-E246342 [cLEF-40-J22]">
      <seq>aagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatggtataccattatccagttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagacaaggtaacagtaggtgaagaagagattaaaaggaagacgctccttattgaaaacatgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaagaaacttctagacagaggcagagagctgcagaaaatgagcaggagctttgtcgtgttaagaccgactttgagtctctaaaatcctatgtcagtaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="28673" stop="27512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28373" g_stop="27812" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E246342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28373" e_stop="27812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCT</genome_strand>
        <mrna_strand>AAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707257" ref_strand="+" ref_description="SGN-E707257 [FA32CA03]">
      <seq>caataaaaagcgatgaactgcctttaccaaattggttcgtaatggaaatttccattgataattttctatgagactgtaagcatcatcatcatcaacacccaaaattatcctcaattttgcgaggttcctgaactcacatcagtgacttgataaggtgatggcgggggagggaaatattgatctctcagctttaaaatcccaattgactcaaactgacgttacttggaagctagagatggagaaaagccagtccccagtggatgctttacaagcaaaactgttggaggtaaaagcttctattcagggatcagaagaagatacaaagaaggagttagatgttctatggcatagagtaagaactgctacaacattgatgacgtacttgaaagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatggtataccattatccagttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagacaaggtaacagtaggtgaagaagagattaaaaggaagacgctccttattgaaaacatgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaagaaacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="29919" stop="27601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29619" g_stop="29497" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29496" i_stop="28637" i_length="860">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28636" g_stop="27901" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="859" r_length="736" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E707257" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29619" e_stop="29497"/>
          <exon e_start="28636" e_stop="27901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAAAGCGATGAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTCCATTGATAATTTTCTATGAGACTGTAAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAGGTGCCTCCTTTTATTTATCTTCACAAATCGTAACTTTTCGTTCTGCTTACTTTGTTTGCCTCCGAAATCCTGTTTTCCTTTTATAACTGTGTAAAGTTGTTTAGATTGACAAATTACCTTGATGTTGTATTTGTTTTCGTTCCAATTCTTTGAATGTTGATCGGAATTTGATGGGTATTGCTAAGAAGGGTTTTAATCCTATGATTTTGGTATAATTTAAGCGGGAAAATTGTCCCTTTCTTTGTCTGAAATTCTAATTCTTTTACATGGGTGTTTTGTTTTCTTTGTATTTTTCTAGGAGGGGAAAGAACAGGTAATGGGGTTTCTCTTTCTTGGATTTTTATGATATTGTTTCGTCAAAAAAGGCTTTTTGACAGTTGGGTTTTGGATTATTATGGATGTAATCAGTAGAGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCT</genome_strand>
        <mrna_strand>CAATAAAAAGCGATGAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTCCATTGATAATTTTCTATGAGACTGTAAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCCAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292805" ref_strand="+" ref_description="SGN-E292805 [cLET-11-G23]">
      <seq>aaagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatggtataccattatccagttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagacaaggtaacagtaggtgaagaagagattaaaaggaagacgctccttattgaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="28674" stop="27701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28374" g_stop="28001" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E292805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28374" e_stop="28001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACAT</genome_strand>
        <mrna_strand>AAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334564" ref_strand="+" ref_description="SGN-E334564 [cTOD-23-A19]">
      <seq>gacaacaaaaagcgatgaactgcctttaccaaattggttcgtaatggaaatttccattgataattttctatgagactgtaagcatcatcatcatcaacacccaaaattatcctcaattttgcgaggttcctgaactcacatcagtgacttgataaggtgatggcgggggagggaaatattgatctctcagctttaaaatcccaattgactcaaactgacgttacttggaagctagagatggagaaaagccagtcccaagtggatgctttacaagcaaaactgttggaggtaaaagcttctattcagggatcagaagaagatacaaagaaggagttagatgttctatggcatagagtaagaactgctacaacattgatgacgtacttgaaagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatggtataccattatccagttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="29921" stop="27767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29621" g_stop="29497" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29496" i_stop="28637" i_length="860">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28636" g_stop="28067" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="695" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E334564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29621" e_stop="29497"/>
          <exon e_start="28636" e_stop="28067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACAAAAAGCGATGAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTCCATTGATAATTTTCTATGAGACTGTAAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAGGTGCCTCCTTTTATTTATCTTCACAAATCGTAACTTTTCGTTCTGCTTACTTTGTTTGCCTCCGAAATCCTGTTTTCCTTTTATAACTGTGTAAAGTTGTTTAGATTGACAAATTACCTTGATGTTGTATTTGTTTTCGTTCCAATTCTTTGAATGTTGATCGGAATTTGATGGGTATTGCTAAGAAGGGTTTTAATCCTATGATTTTGGTATAATTTAAGCGGGAAAATTGTCCCTTTCTTTGTCTGAAATTCTAATTCTTTTACATGGGTGTTTTGTTTTCTTTGTATTTTTCTAGGAGGGGAAAGAACAGGTAATGGGGTTTCTCTTTCTTGGATTTTTATGATATTGTTTCGTCAAAAAAGGCTTTTTGACAGTTGGGTTTTGGATTATTATGGATGTAATCAGTAGAGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTAT</genome_strand>
        <mrna_strand>GACAACAAAAAGCGATGAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTCCATTGATAATTTTCTATGAGACTGTAAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480669" ref_strand="+" ref_description="SGN-E480669 [cSTD-14-H2]">
      <seq>aacaaaaagcaagaaactgcctttaccaaattggttcgtaatggaaattttcattgataattttccatgagactatacgtgttgaagcattatcatcatcaacactcaaaattaccctcaattttgcgaggttcctgaactcacatcagtgacttgataaggtgatggcgggggagggacatattgatctctcagctttgaaatcccaattgactcaaacagacgttacttggaagctagagatggagaaaagccagtcccaagtggatgctttgcaagcaaaactgttggaggtaaaagcttctattcagggatcagaagaagatacaaagaaggagttagatgttctatggcatagagtaagaactgctacaacattgatgacgtatttgaaagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaatgacataccattatccagttggactagagatgttgatctcccatcttttgatgatgctgatgatgaaatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="29918" stop="27907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29618" g_stop="29497" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.803"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29496" i_stop="28637" i_length="860">
            <donor d_prob="0.993" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28636" g_stop="28207" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="559" r_length="429" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E480669" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29618" e_stop="29497"/>
          <exon e_start="28636" e_stop="28207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAGCGATGAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTCCATTGATAATTTTCTATGAG-----AC-TG-T-AAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAGGTGCCTCCTTTTATTTATCTTCACAAATCGTAACTTTTCGTTCTGCTTACTTTGTTTGCCTCCGAAATCCTGTTTTCCTTTTATAACTGTGTAAAGTTGTTTAGATTGACAAATTACCTTGATGTTGTATTTGTTTTCGTTCCAATTCTTTGAATGTTGATCGGAATTTGATGGGTATTGCTAAGAAGGGTTTTAATCCTATGATTTTGGTATAATTTAAGCGGGAAAATTGTCCCTTTCTTTGTCTGAAATTCTAATTCTTTTACATGGGTGTTTTGTTTTCTTTGTATTTTTCTAGGAGGGGAAAGAACAGGTAATGGGGTTTCTCTTTCTTGGATTTTTATGATATTGTTTCGTCAAAAAAGGCTTTTTGACAGTTGGGTTTTGGATTATTATGGATGTAATCAGTAGAGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATT</genome_strand>
        <mrna_strand>AACAAAAAGCAAGAAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTTCATTGATAATTTTCCATGAGACTATACGTGTTGAAGCATTATCATCATCAACACTCAAAATTACCCTCAATTTTGCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGACATATTGATCTCTCAGCTTTGAAATCCCAATTGACTCAAACAGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTGCAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTATTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGAT-AAAATGACATACCATTATCCAGTTGGACTAGAGATGTTGATCTCCCATCTTTTGATGATGCTGATGATGAAATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428646" ref_strand="+" ref_description="SGN-E428646 [STM-50-P1]">
      <seq>aacaaaaagcaagaaactgcctttaccaaattggttcgtaatggatattttcattgataattttccatgagactatacgtgttgaagcattatcatcatcaacactcaaaattaccctcaattttgcgaggttcctgaactcacatcagtgacttgataaggtgatggcgggggagggacatattgatctctcagctttgaaatcccaattgactcaaacagacgttacttggaagctagagatggagaaaagccagtcccaagtggatgctttgcaagcaaaactgttggaggtaaaagcttctattcagggatcagaagaagatacaaagaaggagttagatgttctatggcatagagtaagaactgctacaacattgatgacgtatttgaaagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatgacataccattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="29918" stop="27968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29618" g_stop="29497" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.795"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29496" i_stop="28637" i_length="860">
            <donor d_prob="0.993" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28636" g_stop="28268" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="499" r_length="369" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E428646" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29618" e_stop="29497"/>
          <exon e_start="28636" e_stop="28268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAGCGATGAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTCCATTGATAATTTTCTATGAG-----AC-TG-T-AAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAGGTGCCTCCTTTTATTTATCTTCACAAATCGTAACTTTTCGTTCTGCTTACTTTGTTTGCCTCCGAAATCCTGTTTTCCTTTTATAACTGTGTAAAGTTGTTTAGATTGACAAATTACCTTGATGTTGTATTTGTTTTCGTTCCAATTCTTTGAATGTTGATCGGAATTTGATGGGTATTGCTAAGAAGGGTTTTAATCCTATGATTTTGGTATAATTTAAGCGGGAAAATTGTCCCTTTCTTTGTCTGAAATTCTAATTCTTTTACATGGGTGTTTTGTTTTCTTTGTATTTTTCTAGGAGGGGAAAGAACAGGTAATGGGGTTTCTCTTTCTTGGATTTTTATGATATTGTTTCGTCAAAAAAGGCTTTTTGACAGTTGGGTTTTGGATTATTATGGATGTAATCAGTAGAGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATC</genome_strand>
        <mrna_strand>AACAAAAAGCAAGAAACTGCCTTTACCAAATTGGTTCGTAATGGATATTTTCATTGATAATTTTCCATGAGACTATACGTGTTGAAGCATTATCATCATCAACACTCAAAATTACCCTCAATTTTGCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGACATATTGATCTCTCAGCTTTGAAATCCCAATTGACTCAAACAGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTGCAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTATTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGACATACCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316511" ref_strand="+" ref_description="SGN-E316511 [cTOA-25-A16]">
      <seq>tgatgtctaaacttcctgccagtttgttttgtacttttctagccttgggaaagcacagttcgccatgaatttgtatgactttataatgttcttaataaacttttatctggaaatgctgtctttgtggtgtattgtgaatgaaattagactaattcctggggcattgcaaagaacatggtgatggatttattattctttatccaatgtcatgggaattcctcaacaagttttaaacgagtgcagcttaaccttttttaatctgaatattgtgcttgaatgaaatcactgtagaagaatttttatacgatgggccttttttacccgaaggttgagaactgcagtgtggttgttagagttaaagttttgatatgattcccatgtggtccatattaactgtcttctactagttactaaaacccaatgttcctaaaacatttaattttttaggttcctgaactcacatcagtgacttgataaggtgatggcgggggagggaaatattgatctctcagctttaaaatcccaattgactcaaactgacgttacttggaagctagagatggagaaaagccagtcccaagtggatgctttacaagcaaaactgttggaggtaaaagcttctattcagggatcagaagaagaacaaagaaggagttagatgttctatggcatagagtaagaactgctacaacattgatgacgtacttgaaagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="29383" stop="28019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29083" g_stop="28319" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E316511" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29083" e_stop="28319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCAT</genome_strand>
        <mrna_strand>TGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGA-ACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457520" ref_strand="+" ref_description="SGN-E457520 [cPRO-2-P4]">
      <seq>gttgaagcattatcatcatcaacactcaaaattaccctcaattttgcgaggttcctgaactcacatcagtgacttgataaggtgatggcgggggagggacatattgatctctcagctttgaaatcccaattgactccaacagaccttacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="29845" stop="28233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29546" g_stop="29497" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29496" i_stop="28637" i_length="860">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28636" g_stop="28533" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E457520" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29546" e_stop="29497"/>
          <exon e_start="28636" e_stop="28533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAGGTGCCTCCTTTTATTTATCTTCACAAATCGTAACTTTTCGTTCTGCTTACTTTGTTTGCCTCCGAAATCCTGTTTTCCTTTTATAACTGTGTAAAGTTGTTTAGATTGACAAATTACCTTGATGTTGTATTTGTTTTCGTTCCAATTCTTTGAATGTTGATCGGAATTTGATGGGTATTGCTAAGAAGGGTTTTAATCCTATGATTTTGGTATAATTTAAGCGGGAAAATTGTCCCTTTCTTTGTCTGAAATTCTAATTCTTTTACATGGGTGTTTTGTTTTCTTTGTATTTTTCTAGGAGGGGAAAGAACAGGTAATGGGGTTTCTCTTTCTTGGATTTTTATGATATTGTTTCGTCAAAAAAGGCTTTTTGACAGTTGGGTTTTGGATTATTATGGATGTAATCAGTAGAGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGA</genome_strand>
        <mrna_strand>GTTGAAGCATTATCATCATCAACACTCAAAATTACCCTCAATTTTGCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGACATATTGATCTCTCAGCTTTGAAATCCCAATTGACTCCAACAGACCTTACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407704" ref_strand="+" ref_description="SGN-E407704 [PPI-8-C8]">
      <seq>attgaatggagaaagagcccacaaggataaaagatgggtatggagggggctgatcctggtgatcatggctcttgttcttgctgcagttttaatcagtttccgaaaatattttcaacgttctaattcttcagaggcagatgctcaccaagtggttgacaaatatgcaaatgctctaagcattgctatgcaattcttcgacgttcagaagtctggaaaattggtgaataataagattgcttggagaggagattcggctttgggagatggaagtgaagtgaatttggatttaagtagaggaatgtatgatgctggagaccatgtgaagtttggatttccaatggcattcactgctacagttttatcatgggctattttggagtatggaaaccacatgaacatggtgaacgagctggataacgcccatgaatccctcaagtggatcactgattttcttattaatgctcatccttcggagaatgtcctgtatattcaggtgggagacccaaagctggatcacacatgctgggaaagacctgaggaaatgacaggaaaaaggcctcttacacaagttaatgcatcgtatcctgggacagatgttgcggctgaaagtgcagcagcaatggcggcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="35088" stop="33416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34788" g_stop="34579" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34578" i_stop="34494" i_length="85">
            <donor d_prob="0.614" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34493" g_stop="34210" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="493" r_length="284" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34209" i_stop="33854" i_length="356">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.580" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33853" g_stop="33716" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="631" r_length="138" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E407704" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34788" e_stop="34579"/>
          <exon e_start="34493" e_stop="34210"/>
          <exon e_start="33853" e_stop="33716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATGGAGAAAGAACCACACAAGGATAAAAGATGGGTATGGAGGGGGCTGATCCTGGTGATCACGGCTCTTGTTCTTGCTGCAGTTTTAATCAGTTTCCGAAAATATTTTCATCCGTCTAATTCTTCAGAGGCAGATTCTCATCAAGTGGTTGAAAAATATGCAAATGCTCTTAGCATTGCTATGCAATTCTTCGACGTTCAGAAGTGTAAGAATAGCTATATTCACATTGGTCACTTAATTAAACTTAAGTTTAGGAGTACTTATCTTGATTTTTGAATCATTAACTGCAGCTGGAAAATTGGTGAATAATAAGATTGCTTGGAGAGGAGATTCGGCTATGGGAGATGGAAGTGAAGTTAATTTGGATTTAAGTAGAGGAATGTATGATGCTGGAGACCATGTGAAGTTTGGATTTCCAATGGCATTCACTGCTACAGTTTTATCATGGGCTATTTTGGAGTATGGAAACCACATGAACATGGTGAACGAGCTGGATAACGCCCATGAATCCCTCAAGTGGATCACTGATTTTCTTACAAATGCTCATCCTTCTGAGAATGTCCTGTATATTCAGGTAGATCAATTCCCTTTAACAATTTAAGAAGCATTTTTTCAGTTTCTTGAAAAACTTTTTTCCTACACTTTTTAGGACTTTTACTATGATATCTCCTATCTCCTCTTCCATGCTCCCATAGAACTGTAACGAGTGCGGAATAGTGTTCCTTCCATTAGCACTATAATAATGTAGAACTTCCGTGTTGTCTGACCTTGAGTAATTGATTTTCTGACTGCTGAGTATCTGTTTGCTTGTCAATCTATAGCCAATGCAAACAACATCCTTTTAGCAAGTTGCTGCACACAGCACATACATTAACAGAAAAAGATAATGTTGCTTAGTGAAGTGTCTTTATGTTTTTATCTGCAAGAAAGGTGGGAGACCCAAAGCTCGATCACACGTGCTGGGAGAGACCAGAGGCCATGACAGGAAAAAGGCCTCTTACACAAGTTAACACATCGTATCCAGGGACAGATGTTGCGGCTGAAAGTGCAGCAGCAATGGCGGCTGCA</genome_strand>
        <mrna_strand>ATTGAATGGAGAAAGAGCC-CACAAGGATAAAAGATGGGTATGGAGGGGGCTGATCCTGGTGATCATGGCTCTTGTTCTTGCTGCAGTTTTAATCAGTTTCCGAAAATATTTTCAACGTTCTAATTCTTCAGAGGCAGATGCTCACCAAGTGGTTGACAAATATGCAAATGCTCTAAGCATTGCTATGCAATTCTTCGACGTTCAGAAGT.....................................................................................CTGGAAAATTGGTGAATAATAAGATTGCTTGGAGAGGAGATTCGGCTTTGGGAGATGGAAGTGAAGTGAATTTGGATTTAAGTAGAGGAATGTATGATGCTGGAGACCATGTGAAGTTTGGATTTCCAATGGCATTCACTGCTACAGTTTTATCATGGGCTATTTTGGAGTATGGAAACCACATGAACATGGTGAACGAGCTGGATAACGCCCATGAATCCCTCAAGTGGATCACTGATTTTCTTATTAATGCTCATCCTTCGGAGAATGTCCTGTATATTCAG....................................................................................................................................................................................................................................................................................................................................................................GTGGGAGACCCAAAGCTGGATCACACATGCTGGGAAAGACCTGAGGAAATGACAGGAAAAAGGCCTCTTACACAAGTTAATGCATCGTATCCTGGGACAGATGTTGCGGCTGAAAGTGCAGCAGCAATGGCGGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721623" ref_strand="+" ref_description="SGN-E721623 [FC14CE01]">
      <seq>aatcggccgaattgacaacgatgctctccccttaacggaaacacttcactcctcttccagtacaacttttccccaaaactcaacatcgccatgtaattcgttttcccatcaaatgcaacagcagcagcagcagtgataatggcaacgaatcgcaaccaaacacggtggagattcgaatcagaagacgtccgtcaaaacgacaaaggcagaaggaagaagaaatgataaatgcagggaaacaagctgttaaacctaaacctccaccaaaggattgggaatcaatgaatctaactgagaaggcaatcgaattgtacgtcggagaaaaaggacttttgttctggctaaacaaatttgcttatgcttctatttttattataattgggggttggatactttttcgatttgttggtcctgcatttgacctttaccagttggatactcctactcctcttgctcctgaatctatgtttaaaggtacaggagacaaaccttgacccactggaaaactcaagtttcagaagaaattttcgctttaattactccaaatttttgtaacttgaaagttattagtactactagatttaagcaaataaacatgtcaattggatactatatatatttgtgaagttcaacgatgatacttgtataagttatgcgagaacatatgtatatatttgtataagtaaaacatgaagcaaatatccccttaatactatttgttgaacttgaaattgtcaacctctttgaatacccaatgacataagaaaatttaagatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="36310" stop="34962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36026" g_stop="35262" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="779" r_length="765" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E721623" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36026" e_stop="35262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGATGCTCTCTACCTACCCGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAACTTGAAATTGTCAACCTCTTTGAATACCCAATGACATAAGAAAATTTAAGATGGT</genome_strand>
        <mrna_strand>ACAACGATGCTCTCCCCTTAACGGAAACACTTCACTCCTCTTCCAGTACAACTTTTCCCCAAAACTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAACTTGAAATTGTCAACCTCTTTGAATACCCAATGACATAAGAAAATTTAAGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540077" ref_strand="-" ref_description="SGN-E540077 [TUS-60-C16]">
      <seq>ttttaataaattcatcttcaataatctttcctgaaagcaaatgaaaaatgaacacancgatgctctctactaccccgaaacacttcactcttcttccagtacaacttttctccaaatctcaacatcgccatgtaattcgttttcccatcaaatgcaacagcagcagcagcagtgataatggcaacgaatcgcaaccaaacacggtggagattcgaatcagaagacgtccgtcaaaacgacaaaggcagaaggaagaagaaatgataaatgcagggaaacaagctgttaaacctaaacctccaccaaaggattgggaatcaatgaatctaactgagaaggcaatcgaattgtacgtcggagaaaaaggacttttgttctggctaaacaaatttgcttatgcttctatttttattataattgggggttggatactttttcgatttgttggtcctgcatttgacctttaccagttggatactcctactcctcttgctcctgaatctatgtttaaaggtacaggagacaaaccttgacccactggaaaactcaagtttcagaagaaattttcgctttaattactccaaatttttgtaacttgaaagttattagtactactagatttaagcaaataaacatgtcaattggatactatatatatttgtgaagttcaacgatgatacttgtataagttatgcgagaacatatgtatatatttgtataagtaaaacatgaagcaaatatccccttaatactatttgttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="36358" stop="35017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36050" g_stop="35317" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="763" r_length="734" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="764" polyA_stop="781"/>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E540077" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36050" e_stop="35317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAAAGCAAATGAAAAATGAACACAACGATGCTCTCTACCTACCCGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAA</genome_strand>
        <mrna_strand>CCTGAAAGCAAATGAAAAATGAACACANCGATGCTCTCTACTACCCCGAAACACTTCACTCTTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287480" ref_strand="-" ref_description="SGN-E287480 [cLES-9-O19]">
      <seq>aggcaatcgaattgtacgtcggagaaaaaggacttttgttctggctaaacaaatttgcttatgcttctatttttattataattgggggttggatactttttcgatttgttggtcctgcatttgacctttaccagttggatactcctactcctcttgctcctgaatctatgtttaaaggtacaggagacaaaccttgacccactggaaaactcaagtttcagaagaaattttcgctttaattactccaaatttttgtaacttgaaagttattagtactactagatttaagcaaataaacatgtcaattggatactatatatatttgtgaagttcaacgatgatacttgtataagttatgcgagaacatatgtatatatttgtataagtaaaacatgaagcaaatatccccttaatactatttgttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="36043" stop="35017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35743" g_stop="35317" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="444"/>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E287480" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287480" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35743" e_stop="35317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAA</genome_strand>
        <mrna_strand>AGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734715" ref_strand="+" ref_description="SGN-E734715 [LB13BF04]">
      <seq>cgaaacacttcactcctcttccagtacaacttttctccaaatctcaacatcgccatgtaattcgttttcccatcaaatgcaacagcagcagcagcagtgataatggcaacgaatcgcaaccaaacacggtggagattcgaatcagaagacgtccgtcaaaacgacaaaggcagaaggaagaagaaatgataaatgcagggaaacaagctgttaaacctaaacctccaccaaaggattgggaatcaatgaatctaactgagaaggcaatcgaattgtacgtcggagaaaaaggacttttgttctggctaaacaaatttgcttatgcttctatttttattataattgggggttggatactttttcgatttgttggtcctgcatttgacctttaccagttggatactcctactcctcttgctcctgaatctatgtttaaaggtacaggagacaaaccttgacccactggaaaactcaagtttcagaagaaattttcgctttaattactccaaatttttgtaacttgaaagttattagtactactagatttaagcaaataaacatgtcaattggatactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttcgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="36304" stop="35123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36004" g_stop="35430" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="618"/>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E734715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36004" e_stop="35430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACT</genome_strand>
        <mrna_strand>CGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723757" ref_strand="+" ref_description="SGN-E723757 [FC21DA09]">
      <seq>cttttctccaaatctcaacatcgccatgtaattcgttttcccatcaaatgcaacagcagcagcaccagtgataatggcaacgaatcgcaaccaaacacggtggagattcaaatcagaagacgtccgtcaaaacgacaaaggcagaaggaagaagaaatgacaaatgcagggaaacaagctgttaaacctaaacctccaccaaaggattgggaatcaatgaatctaactgaaaaggcaatcgaattgtacgtcggaaaaaaaggacttttgttctggctaaacaaatttgctaacgctccaattttaattaaaattgggggttggatactttttcgatttgttggacctgcatttgacctttaccagttggatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="36275" stop="35300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35975" g_stop="35600" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E723757" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35975" e_stop="35600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTC</genome_strand>
        <mrna_strand>CTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCACCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCAAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGACAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAAAAGGCAATCGAATTGTACGTCGGAAAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTAACGCTCCAATTTTAATTAAAATTGGGGGTTGGATACTTTTTCGATTTGTTGGACCTGCATTTGACCTTTACCAGTTGGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395579" ref_strand="+" ref_description="SGN-E395579 [TUS-16-D24]">
      <seq>caaatcatccttacctgtgactaccccgaaagtgaagatgtcatgggctgatatggctcaggaggatgaacttcaagctgaggaagtgagtgagtcaattgccttgagaagtcaggtgaatggtgtggctgaagaggaaattactaatccggagagtaagcaaaaaacagaattgtcaagggagaaacgagagtacattagattctgtaatgtgaagaggaaaaaggatttcatatgtttggagagggtgagggggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="37549" stop="38408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37849" g_stop="38108" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E395579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37849" e_stop="38108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAA</genome_strand>
        <mrna_strand>CAAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215054" ref_strand="+" ref_description="SGN-E215054 [cLEC-78-G10]">
      <seq>aaatcatccttacctgtgactaccccgaaagtgaagatgtcatgggctgatatggctcaggaggatgaacttcaagctgaggaagtgagtgagtcaattgccttgagaagtcaggtgaatggtgtggctgaagaggaaattactaatccggagagtaagcaaaaaacagaattgtcaagggagaaacgagagtacattagattctgtaatgtgaagaggaaaaaggatttcatatgtttggagagggtgagggggaaaattgtgaatatacttgatggattggagctacataagggtgtctttagcgccgctgagcaaattagaatagttaaatatgcggagaagcttgaccagatggggaagaatggggaactgaaagagaggacttatactacaccaacaaagtggatgaggggcaaaggacgtgtgacaatccaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="37550" stop="41353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37850" g_stop="38228" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38229" i_stop="40989" i_length="2761">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40990" g_stop="41053" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="443" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E215054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37850" e_stop="38228"/>
          <exon e_start="40990" e_stop="41053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGGAACTGAAAGGTTTGTTTTACTCTTGATATAGCCCTTAACCATTCTTTTTCCTTTTCTCAAATGGATTTTATTGTCATATTGGGTTTTGCAAATCATGCTTAAAGCAGGTTTAGTTGCTTGCTTGATATTGTGTAGCTGTTTCTGTTTAAACTTCAAGTGTGTTTGAAATTTAAGCTGGTATTTCTGTGAATTAGAACACTCATTTTTAATCCATTTTGTTGTTGTTAGACTTGTGTTAGCATTACAATATTAATGGTGTTTGATGATTGGTAATAACTAGTGTGTCCTCTTTCTTTCTTTTTCTTATTGTTCTCTTTATTTGCTCTTGAGCTCTCTAAATCATGGCATGCAGTCCTGTCACTGACAGAGGGAAAATAATCTGTATTTGTTGCATAGATGTGAGGTTATTTGTCAAATTTATATTTGTTTCCCTGTGAGGTGGTAGGGCTGGCTGATTTTAACGGAGAAATCACACGGCAAGCTCAAAAATTCTGCTTGATTGTGGGTACATTACACAACTGCTAGTTTTGTAGAATGTGAGATGTACCATTGTTGATTCTGATTCAATTTTTCAACAATTTAGCAATGGAGTAAAGCATTTGATGTTAATATAGTTGTTCATGCCTGAATCTTTATTTTGGCAGATAGTCACCCAATTCCTTTTAGGTTCTATGCTATTTAGATGCTGAAATCTTTCAAGTAGGGCGATTGAAATGGAGTTAGTCTATTAGCTTAACTATCAGAAAACTAAGAAAAAGAATTTTGGCTTTGCTTGAGAGAGCATCAGTTTATTGCATTGGGGTTGGCGTGCTTCTTTTTACCTACCAGTATCTTTTACAGTAAGAATCTTATGCAGGAAAACATACCTATTACTCCTTATTTGAGATGATATCTAATCATCCAGATTCAACATTAGATTTCTCTTTTTTGTCTGTTATTGAGAGCTGCAGTAATGTATGTTAAACCAAAGCTGTTTGGGCATCCTAGACTTCAATATATTGAAATGGGGAATCTTGTCTCAGTAATGATTATTCTATTTTAGTTTGTTGATGTTGATATCTATATAAGGTGGTACTGTGGCATGAGAAATTTCTTCTTCCTTTTTTTGTAATTGAAGAAACTTCGTTAAAATGCCTAGTTTTAATGCCAGATGTCTAGGTTTATTGCACATACCTAGATTAATTGCATAGAAATCGAGTAATATGGAAACTTAACTTATTTACCGTGTCTAAACTAAAAGGAAAAAGTCCGCTTCTACTATGGTAACTCTTGGAGACCCACATTGGTGGGTCAAAGTTTACTTGGTCTCTTTATATGGTCTTGGGCAATCCTCACGTCTTGAGCTTAGCTTTTGAAGTTTTATTACGCTCAAGGTCCATTTCTCTAACATGGTATAATAGTCAAGCTCATCAAAATTCATTGTTTCCAATGTTGGGTCCCCTATCTTATATTGTCCATGCTCTAGATTTCCAATCCTGGGCGTATGGGGTGTATTAGCTTCCCATATTGACGGGTCAAGACTTATTTGTTCTCTTTATATGTTCTTGATCAATCTGCACTTTGTGATCTAGCTTTTGAGGTTGAGTTAGGTTTAAGTTGTTTGTACCTGTATCAAGGTCAGTAAAAAATACACAAATATAGACAGAAAATACACTTTTAATCCGAGTCCACAGAAGCTAAGTTGTCTCCTTAAGAAATTTAATCCCCTCACTGTACCCGAGGTTACATATTAATATCTCTGAAGATAAAACAGATTAATCCTGTTAAAGAAGTAGCGTTACCTCAAACTTCAATAACTTCAGCGAACTTAAGAACAGTAACAAGCCACACAGACTCAGTCGATCGACAATTTTGTTTATGAGAGCAAATGTATGCAGAGAGAAGGAAAAAATCTTCAGTATTCGAAAACTGGAAAATCCTCTTATTTATAGCCATTTTCAGCAAGGGACGCGTCTGTTCGAAAAAATATGTTAAGACCCGTTTTGTCCAGAGCGTTGTGTCGTTTGGGAAGAGTAACGACTTTTCGGAAAGAGTAACGACTTTCCGGAATGTTACCGTTACACGCGAATTAAAATCCCGTTATATTAAATTAATTTTGTTGATTAACTAATTAACTAACATCCTGAATTAATTTATAAGAGAAAGGAAATTAGGAAAAGAATTTAATTGATGAGATTGATGAAATAAATTTTGTCCAAAAATATGATCAATCACATCATTTGTCAAATCCGAAGTTGAGCGACGACGACGGCAGCGCGAGGGGCACCTTTTACTTGATTCAACTTAGAAACTGTTACCTGTTTGAACATTAATAAAGATATCATAGATTTTTGTTGGTATGGTATAGGAAAGAAGAAGTTGCAAAAATAACGATTGAGGCATAACTATAAGTTTTCATTTGAAAAAATTAGCAAGTAGTTTTACAAGGTGCACATTTTCTCTGTTTGGCTAATTTGTCGTTTTCTGTTAAGAATGACACAGGCACCTTCTCTTTGTGAAGATTCGTGAAGCAGTTCAGGAACCTTTCTTTTATAAATTTCTATATTAATTCAGTAATTTTACCCTAGTTTCGTGTCAATTTTGTCTTCCTTGTGACTCACATCACGAATTAGTTCGATCTGGTATTGTTTTTTCCTTTATGCTTGTTACAACGGTGATTTTTTTTCTTTGAGCTTCCTCCTTAAGTTTCTCTTTTAAATTTGTTTGTAAAGTTATTTCTGTCAATTTTAGTTATCTCATGGCTTCTTACCTGCCTGTGGTGATTGTTTAGAGAGGACTTATACTACACCAACAAAGTGGATGAGGGGCAAAGGACGTGTGACAATCCAATTTGG</genome_strand>
        <mrna_strand>AAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGGAACTGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACTTATACTACACCAACAAAGTGGATGAGGGGCAAAGGACGTGTGACAATCCAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204951" ref_strand="+" ref_description="SGN-E204951 [cLEC-16-M15]">
      <seq>aaatcatccttacctgtgactaccccgaaagtgaagatgtcatgggctgatatggctcaggaggatgaacttcaagctgaggaagtgagtgagtcaattgccttgagaagtcaggtgaatggtgtggctgaagaggaaattactaatccggagagtaagcaaaaaacagaattgtcaagggagaaacgagagtacattagattctgtaatgtgaagaggaaaaaggatttcatatgtttggagagggtgagggggaaaattgtgaatatacttgatggattggagctacataagggtgtctttagcgccgctgagcaaattagaatagttaaatatgcggagaagcttgaccagatggggaagaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="37550" stop="38519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37850" g_stop="38219" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E204951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37850" e_stop="38219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGG</genome_strand>
        <mrna_strand>AAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252069" ref_strand="+" ref_description="SGN-E252069 [cLEG-8-B20]">
      <seq>ttgacaatcatgattatgtgcggggatggggtactgtttcattggttaccgagtgcaacattgtgttcggatccaacttgaaaataatgggtcctggtgaatttgctggtgcgattgcaataccattgccagttggatctgtacttgtcttgaatggaaatggagctgatgtagctaaacactgtgtgccagctgtgcctactaataggatttcaatcacatttagaagaatggatgaatctaaaaggccaactggatatgttcccgagcatgatttacaagggttgcagcctttatcatatgaatcagactcgcaaaagaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="41198" stop="42262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41468" g_stop="41603" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41604" i_stop="41676" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41677" g_stop="41748" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="208" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41749" i_stop="41843" i_length="95">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41844" g_stop="41962" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="327" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E252069" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41468" e_stop="41603"/>
          <exon e_start="41677" e_stop="41748"/>
          <exon e_start="41844" e_stop="41962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAATCATGATTTTGTGCGCCCATTTTGTACTGTTTCATTCCTTAGCGAGTGCAACATTGTGTTCGGATCCAACTTGAAAATAGTGGGTCCTGGTGAATTTGCTGGTGCGATTGCAATACCATTGCCAGTTGGGTAAGTGAGCGTATTCGTCTTATCATAACTTGTGAAATTAGGAAGATTGATCATTAATGACATTATATTGCAGATCTGTACTTGTCTTGAATGGAAATGGAGCTGATGTAGCTAAACACTGTGTGCCAGCTGTGCCTACTAAGAGGTACAAACTGAATGTTCAGAAGTCTCTAGTCATAGATAAATCTTCTGTTCCGCTGTGTAACATGCTAACGTCTTGTTAATCCTTATCTCACATAGGATTTCAATCACATTTAGAAGAATGGATGAATCTAAAAGGCCAACTGGATATGTTCCCGAGCATGATTTACAAGGGTTGCAGCCCTTATCATATGAATCAGACTCGCAAAAGAAATCAA</genome_strand>
        <mrna_strand>TTGACAATCATGATTATGTGCGGGGATGGGGTACTGTTTCATTGGTTACCGAGTGCAACATTGTGTTCGGATCCAACTTGAAAATAATGGGTCCTGGTGAATTTGCTGGTGCGATTGCAATACCATTGCCAGTTGG.........................................................................ATCTGTACTTGTCTTGAATGGAAATGGAGCTGATGTAGCTAAACACTGTGTGCCAGCTGTGCCTACTAATAG...............................................................................................GATTTCAATCACATTTAGAAGAATGGATGAATCTAAAAGGCCAACTGGATATGTTCCCGAGCATGATTTACAAGGGTTGCAGCCTTTATCATATGAATCAGACTCGCAAAAGAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744683" ref_strand="+" ref_description="SGN-E744683 [GI|28070967]">
      <seq>ggcttacatacatacatttgtagagttgttgttgttttatgatggaacatcaacacaacatagaagatggtggtaaaaatagtaacaacagtttcctgtgcaggcaaagtagtagccgttggacgccaacgagcgatcagataagaatattgaaggatctctactacaacaatggagttaggtctccaactgctgaacagattcagaggatatctgctaagttgagacagtacggtaagattgaaggcaaaaatgtgttttattggtttcagaaccataaagctcgtgaaagacaaaagaagaggctcattgctgccgcctctgccactgataataataatatctcttccatgcaaatgattccacatctttggagatctcctgatgatcaccacaagtacaacactgctactactaatccaggtgtccagtgtccatcaccatcttcacatggggtattaccagtggtacagactggaaactatggttatggaactttggctatggagaagagctttagggagtgttcaatatcaccaccaggtggtagttatcatcaaaatttgacatgggttggtgttgatccttacaacaatatgagtactacttctccagcaacttacccttttcttgaaaaaagcaacaacaaacactatgaagaaaccctagatgaagagcaagaagaagaaaattaccaaaggggtaactctgctttagaaactctgtcacttttccccatgcatgaagagaacatcatctcaaatttctgcatcaaacatcatgaatcttctggaggatggtaccattctgataataacaatttggctgctcttgaacttactctcaactctttcccctaaattatgaactagtctatcttatgtttgtagtaagtaagtactaatctaatttggtatgtgccaagctatttggaccttatggtaatgttaattaatcttaatctaagttgtactaatattattaattaaagtatggataagtttagcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="47688" stop="49710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47986" g_stop="48408" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48409" i_stop="48513" i_length="105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48514" g_stop="48611" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="521" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48612" i_stop="48926" i_length="315">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48927" g_stop="49413" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="1008" r_length="487" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49414" i_stop="49701" i_length="288">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.020" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49702" g_stop="49710" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1009" r_stop="1017" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1018" polyA_stop="1035"/>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E744683" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1017</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47986" e_stop="48408"/>
          <exon e_start="48514" e_stop="48611"/>
          <exon e_start="48927" e_stop="49413"/>
          <exon e_start="49702" e_stop="49710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATACATACATACATTTGTAGAGTTGTTGTTGTTTTATGATGGAACATCAACACAACATAGAAGATGGTGGTAAAAATAGTAACAACAGTTTCCTGTGCAGGCAAAGTAGTAGCCGTTGGACGCCAACGAGCGATCAGATAAGAATATTGAAGGATCTCTACTACAACAATGGAGTTAGGTCTCCAACTGCTGAACAGATTCAGAGGATATCTGCTAAGTTGAGACAGTACGGTAAGATTGAAGGCAAAAATGTGTTTTATTGGTTTCAGAACCATAAAGCTCGTGAAAGACAAAAGAAGAGGCTCATTGCTGCTGCCTCTGCCACTGATAATAATAATATCTCTTCCATGCAAATGATTCCACATCTTTGGAGATCTCCTGATGATCACCACAAGTACAACACTACTACTACTAATCCAGGTAATTCTTTCTACTTTTTAGTATTGTCTTGGTTAAAATAAAGCGGACTACCTGCTGCTATAACATGTTAAAATACATTAATAGTTTACGATTATATATATACAGGTGTTCAGTGTCCATCACCATCTTCACATGGGGTATTACCAGTGGTACAGACTGGAAACTATGGTTATGGAACTTTGGCTATGGAGAAGAGCTTTAGGGTAAGTTTTGGCCTAATAAAACAACACCAATCTTAGAGTTAAATACTCTATGTTGCTTGTGTTTTTTTTTCCAACTAAGTACACATGAAATGAAGAAGAAAAAAAAAGAAGAGGATATATATATATAGTCCTATTATCAAAACAACATTTTCTTCACCATAAAAATATGAGAACAACTACTCAACTTGTCATATGTCAAATTTTCCTTTATTCTATACATATAGTATATAAGATTTGAACTAGAAAAAAAAGAAAATAAGATTTTTGAAATTGAACCCTAATTTTGCAATTGTTGTTGATGAATGGTTGAAACAGGAGTGTTCAATATCACCACCAGGTGGTAGTTATCATCAAAATTTGACATGGGTTGGTGTTGATCCTTACAACAATATGAGTACTACTTCTCCAGCAACTTACCCTTTTCTTGAAAAAAGCAACAACAAACACTATGAAGAAACCCTAGATGAAGAGCAAGAAGAAGAAAATTACCAAAGGGGTAACTCTGCTTTAGAAACTCTGTCACTTTTCCCCATGCATGAAGAGAACATCATCTCAAATTTCTGCATCAAACATCATGAATCTTCTGGAGGATGGTACCATTCTGATAATAACAATTTGGCTGCTCTTGAACTTACTCTCAACTCTTTCCCCTAAATTATGAACTAGTCTATCTTATGTTTGTAGTAAGTAAGTACTAATCTAATTTGGTATGTGCCAAGCTATTTGGACCTTATGGTAATGTTAATTAATCTTAATCTAAGTTGTACTAATATTATTAATTAAAGTATGGATAAGTTTATTAGTCTTTCTGTCTCATTTTATATGATATTTTTTATTCCTAATCAAATCGTATCACGTGAAATTTTAATTTACTATGAATGGAGGAATTTTATTTTTGATAGGCACTAGTCAGTAATCACTAGCAGACAGTACGAAGCAAATATTGTACTGTTCGTACCTACACCTATGGTAATATAAAACCAACATGCCATGGAGTTTCTAAGCCAAAACATTAATTGAGATTATGAATTCAAGATGATTAATAATGGAAGAATTTAACATTGTGCTCTCATAATATTTTTTTTTTAAGAAAAAAAAA</genome_strand>
        <mrna_strand>GGCTTACATACATACATTTGTAGAGTTGTTGTTGTTTTATGATGGAACATCAACACAACATAGAAGATGGTGGTAAAAATAGTAACAACAGTTTCCTGTGCAGGCAAAGTAGTAGCCGTTGGACGCCAACGAGCGATCAGATAAGAATATTGAAGGATCTCTACTACAACAATGGAGTTAGGTCTCCAACTGCTGAACAGATTCAGAGGATATCTGCTAAGTTGAGACAGTACGGTAAGATTGAAGGCAAAAATGTGTTTTATTGGTTTCAGAACCATAAAGCTCGTGAAAGACAAAAGAAGAGGCTCATTGCTGCCGCCTCTGCCACTGATAATAATAATATCTCTTCCATGCAAATGATTCCACATCTTTGGAGATCTCCTGATGATCACCACAAGTACAACACTGCTACTACTAATCCAG.........................................................................................................GTGTCCAGTGTCCATCACCATCTTCACATGGGGTATTACCAGTGGTACAGACTGGAAACTATGGTTATGGAACTTTGGCTATGGAGAAGAGCTTTAGG...........................................................................................................................................................................................................................................................................................................................GAGTGTTCAATATCACCACCAGGTGGTAGTTATCATCAAAATTTGACATGGGTTGGTGTTGATCCTTACAACAATATGAGTACTACTTCTCCAGCAACTTACCCTTTTCTTGAAAAAAGCAACAACAAACACTATGAAGAAACCCTAGATGAAGAGCAAGAAGAAGAAAATTACCAAAGGGGTAACTCTGCTTTAGAAACTCTGTCACTTTTCCCCATGCATGAAGAGAACATCATCTCAAATTTCTGCATCAAACATCATGAATCTTCTGGAGGATGGTACCATTCTGATAATAACAATTTGGCTGCTCTTGAACTTACTCTCAACTCTTTCCCCTAAATTATGAACTAGTCTATCTTATGTTTGTAGTAAGTAAGTACTAATCTAATTTGGTATGTGCCAAGCTATTTGGACCTTATGGTAATGTTAATTAATCTTAATCTAAGTTGTACTAATATTATTAATTAAAGTATGGATAAGTTTAGCA................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687729" ref_strand="+" ref_description="SGN-E687729 [T3_tus_79_K15]">
      <seq>tgtcgccgccggtgaaatacaatacaaaagaatctgcaacttgcttgttatcgaagaacaccatggcaggtggaccaactgacagagaagacaaggtctcacttgagaccactgaagaaattctacagagcatggaagtcggcatgacatttcgcgactatagtggtagaatcagttcaatggatttccataagacatcaaattttatggtgacagccagtgatgatgagtccatacgtctatatgatgttgcaaatgcaacgtgtttgaaaactattaatagcaaaaagtacggggtcgatctggttagcttcacttctcatccaacgactgtaatatactcctccaagaatggttgggatgaatctctacgacttctttcattgcatgacaacaagtacttgcggtatttcaagggtcatcgtgacagggtcgtctctcttagcttatgctatagaaaggagtattttatctctggctcacttgatcgaactgttctactttgggatcaaagggctgagaaatgccagggccttcttcgagtgcaaggaagaccagctactgcttatgatgagcaaggccttgtatttgctattgcttttggaggatatataaggatgtttgatgcacgctatttcgacaagggaccttttgaaattttctctgttggtggagatgtgtctgatgcttacaacgttaagttcagtaacgaagggagacttgtgcttttgacaactaaggaagggcatatttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="61291" stop="57552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60992" g_stop="60924" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60923" i_stop="60836" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60835" g_stop="60744" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="161" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60743" i_stop="59806" i_length="938">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59805" g_stop="59705" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="262" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59704" i_stop="58709" i_length="996">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58708" g_stop="58608" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="363" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58607" i_stop="58515" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58514" g_stop="58448" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="430" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58447" i_stop="58365" i_length="83">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58364" g_stop="58265" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="530" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58264" i_stop="58183" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58182" g_stop="58069" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="644" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58068" i_stop="57964" i_length="105">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57963" g_stop="57852" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="757" r_length="113" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E687729" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60992" e_stop="60924"/>
          <exon e_start="60835" e_stop="60744"/>
          <exon e_start="59805" e_stop="59705"/>
          <exon e_start="58708" e_stop="58608"/>
          <exon e_start="58514" e_stop="58448"/>
          <exon e_start="58364" e_stop="58265"/>
          <exon e_start="58182" e_stop="58069"/>
          <exon e_start="57963" e_stop="57852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGCCGCCGGTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAGGTACAGTAGAAATTATGAAGTAAATTGAATTATCTTTGTGTTACTTGATTATTTTCTGTTGCTTCTTGACGATTTCAGTTTTTCTCAGGTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTATGTAAGTTTGGTAATTTGGATAGCTCTTTCGTTTAAGAATTCATAAGCTACAGGAAACCGATTTTAAAAGCCGTAAAATTTGTCCTCGTTTTTTTGTCCCTTCCTTAGTATATTGTTCACACTGGCGCTGTTGATTACTTCAAGGGAAATATTAGGTTCAGAAGGAACAGTGGTGTAATTGATCGCAGTATGTGTTATCAGACTGCCAAATCTAATTGAACAACCCTAGCAGAAGTGCCGCTTGATCTTTTAATGGGGAAAATCTTGTTTTTTTAAGCTAATTTTAGCTTTATTGGTTTAATACAGTTGCGTTATCATCATTTATGATTTCAATGATAGCTAATACTTAAGAGAAATATACACCTTCTTTTAATTTAAAGTTTTGCATTTGTGTTGGTTAAGGTTGTCGGAGAAACGAAACAAACACTTCTATTACTCGTTCCATTTCATGAAAAGAGGAATATACATAGGCATGCATAAGGGATGCACAATGTTTGCTTCTATTTGACAAGAGTAGTAAGACTCTTTCAATTATTGTATTGAGGGTCGTTGTGTTCATGCAACGATTATAATATAGTAGTAAATTAGAGTTGTATTAGTAATACAAAGTTCTATACGTAAAAGCAATCATTGTACTGGTAATATAGAATTAAACGGGTGGTTATTTTTTCCTTATACAACAAATAGAATGAGCTCTAAAAGAACTTTGTAGTTGTATGATCTTTTTTTTTTTTTGAGACGCAACAATATGATCATTATCTGTTAATTAATGTATATTCTTGTCAACACCTTGTGTCTAAAAAGGTTGAGTAACGGTATTATAGACCAACTATTAAGAGCTATGCTGTGATCCTTTCTAAAACAGCTGTTGTTCTTCTTCACTAAAGTGTGTAGGCTGTGTAAGCATTTAATATTGACATAGATTTTCTCTACATGCAGAGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAACGTAAGCATCTTTACTTTTACTTTATTGGCAGCAAATTTAATTAAACGATTCATACTTTCTTTATTGTTGTTTCTTGGTACTTTTAGCAGGCAGTGCTACATTTCTGTTAACCTCTGTATAACTGATAAATTAGGAAAGTTAAAACTTTGTTCTTCCAAGAGCGCAACTTACAGTATATTCTTATATTCTTTCCCAGCTCAAAAAGAGCAGTGTTTAATAAAACGGCGTATTGGTTGTCAAATAATGATGTGCTGCTGCACCCATTAACCATTTAAATTCCTTTCACAGCTATTAATTATTTCCATTTGGGGCGTGAAGTAATCCTCTTTACACTTATGATGCACTAAATTAGCAAGTACTCAAAAAGACTCTCAAGCAGGTTGGCTTCTCAAAACCACACTTTGCCCTGTAATCATCTCCTCACTTATCAGTGTCCTACTTTAGATGATCATTTGTTGAGAAGCGCAAAATAATTTAAAACAGAAGCTTGAGATCATCTGCTGAGGTGGGTTTGAGGGCTAGCTCACTTGGTGGGCTCCCTGCCTTCCACCGTTGAGGTTTCCAAGCCCCATTACTAGCGTAGCATCCCTCTCCCTGATGTAATCAAAATAAAAAGGAAAGGCACGTATGAAAAAAAAAGAAGGTCATTGCTGTATATCTGCTTCTTTACAATCAAGCCTTACAAAGTGAATTTTGAACCAGAATTTGTTATTGGACTCAAATATGAGCTAAGATCCTTATGGCCTTCTCATTCATCATGTTTGGCCTCATAAAATAACTCTACATTTTATCATTATTAACAAGGTGGCTCCCTATAGAAGCATCTTTTCTTCAGAAAGAGCTTCTATTAGAAAAACTTGGGGAAAATGCTCTTATTCTGTCTCTTCTCCTTCCGTGTTTTTTTTTTCATTTTTGTTTCTTCTTTTCATTAAATGTTATCTTGATGCCTTCTTCTCATGTTGTTGGGGATGCTATGTAATATATCCATCATTGCAGGTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATGGTATGCACCTTATTCTAAGATGATAAATTCCGGTGTATAATCTTTGAAAAGCAGAACAAGTGAATTACTAATTTGTCTGATGGACTGTTTCAGAATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAGGCACACTTCTAAGCAGTACCAACTTTGTCAGACTTCCATTGAATATCAATCCTCAGTACTAAGTCTGTATTTGTCATTTGCAGGGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTATCTCTGGCTCACTTGATCGAACTGTTCTACTTTGGGATCAAAGGGCTGAGAAATGCCAGGTAAAGTCCTCATTGACATTATTTGTTCTTATCAAATGTTTTCTTCATATATCTGATTAATTGATAAGTTTTCTGTTCTTAGGGCCTTCTTCGAGTGCAAGGAAGACCAGCTACTGCTTATGATGAGCAAGGCCTTGTATTTGCTATTGCTTTTGGAGGATATATAAGGATGTTTGATGCACGCTATTTCGACAAGGTTTTGCATTTGATACATGAAAATGAATTACTTAATTGACATGCGTAATATTTGTCATTTGCATCTTTAGCTTTCATTAATTTGTCGAAAGTTAACTCTTTGAAGGGACCTTTTGAAATTTTCTCTGTTGGTGGAGATGTGTCTGATGCTAACAGCGTTAAGTTCAGTAACGATGGGAGACTTGTGCTTTTGACAACTAAGGATGGGCATA-TTCATG</genome_strand>
        <mrna_strand>TGTCGCCGCCGGTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAG........................................................................................GTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATG.............................................................................................AATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAG...................................................................................GGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTATCTCTGGCTCACTTGATCGAACTGTTCTACTTTGGGATCAAAGGGCTGAGAAATGCCAG..................................................................................GGCCTTCTTCGAGTGCAAGGAAGACCAGCTACTGCTTATGATGAGCAAGGCCTTGTATTTGCTATTGCTTTTGGAGGATATATAAGGATGTTTGATGCACGCTATTTCGACAAG.........................................................................................................GGACCTTTTGAAATTTTCTCTGTTGGTGGAGATGTGTCTGATGCTTACAACGTTAAGTTCAGTAACGAAGGGAGACTTGTGCTTTTGACAACTAAGGAAGGGCATATTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325373" ref_strand="+" ref_description="SGN-E325373 [cTOC-1-G21]">
      <seq>gtgaaatacaatacaaaagaatctgcaacttgcttgttatcgaagaacaccatggcaggtggaccaactgacagagaagacaaggtctcacttgagaccactgaagaaattctacagagcatggaagtcggcatgacatttcgcgactatagtggtagaatcagttcaatggatttccataagacatcaaattttatggtgacagccagtgatgatgagtccatacgtctatatgatgttgcaaatgcaacgtgtttgaaaactattaatagcaaaaagtacggggtcgatctggttagcttcacttctcatccaacgactgtaatatactcctccaagaatggttgggatgaatctctacgacttctttcattgcatgacaacaagtacttgcggtatttcaagggtcatcgtgacagggtcgtctctcttagcttatgctatagaaaggagtatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="61281" stop="58024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60981" g_stop="60924" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60923" i_stop="60836" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60835" g_stop="60744" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="150" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60743" i_stop="59806" i_length="938">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59805" g_stop="59705" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="251" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59704" i_stop="58709" i_length="996">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58708" g_stop="58608" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="352" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58607" i_stop="58515" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58514" g_stop="58448" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="419" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58447" i_stop="58365" i_length="83">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58364" g_stop="58324" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="460" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E325373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60981" e_stop="60924"/>
          <exon e_start="60835" e_stop="60744"/>
          <exon e_start="59805" e_stop="59705"/>
          <exon e_start="58708" e_stop="58608"/>
          <exon e_start="58514" e_stop="58448"/>
          <exon e_start="58364" e_stop="58324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAGGTACAGTAGAAATTATGAAGTAAATTGAATTATCTTTGTGTTACTTGATTATTTTCTGTTGCTTCTTGACGATTTCAGTTTTTCTCAGGTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTATGTAAGTTTGGTAATTTGGATAGCTCTTTCGTTTAAGAATTCATAAGCTACAGGAAACCGATTTTAAAAGCCGTAAAATTTGTCCTCGTTTTTTTGTCCCTTCCTTAGTATATTGTTCACACTGGCGCTGTTGATTACTTCAAGGGAAATATTAGGTTCAGAAGGAACAGTGGTGTAATTGATCGCAGTATGTGTTATCAGACTGCCAAATCTAATTGAACAACCCTAGCAGAAGTGCCGCTTGATCTTTTAATGGGGAAAATCTTGTTTTTTTAAGCTAATTTTAGCTTTATTGGTTTAATACAGTTGCGTTATCATCATTTATGATTTCAATGATAGCTAATACTTAAGAGAAATATACACCTTCTTTTAATTTAAAGTTTTGCATTTGTGTTGGTTAAGGTTGTCGGAGAAACGAAACAAACACTTCTATTACTCGTTCCATTTCATGAAAAGAGGAATATACATAGGCATGCATAAGGGATGCACAATGTTTGCTTCTATTTGACAAGAGTAGTAAGACTCTTTCAATTATTGTATTGAGGGTCGTTGTGTTCATGCAACGATTATAATATAGTAGTAAATTAGAGTTGTATTAGTAATACAAAGTTCTATACGTAAAAGCAATCATTGTACTGGTAATATAGAATTAAACGGGTGGTTATTTTTTCCTTATACAACAAATAGAATGAGCTCTAAAAGAACTTTGTAGTTGTATGATCTTTTTTTTTTTTTGAGACGCAACAATATGATCATTATCTGTTAATTAATGTATATTCTTGTCAACACCTTGTGTCTAAAAAGGTTGAGTAACGGTATTATAGACCAACTATTAAGAGCTATGCTGTGATCCTTTCTAAAACAGCTGTTGTTCTTCTTCACTAAAGTGTGTAGGCTGTGTAAGCATTTAATATTGACATAGATTTTCTCTACATGCAGAGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAACGTAAGCATCTTTACTTTTACTTTATTGGCAGCAAATTTAATTAAACGATTCATACTTTCTTTATTGTTGTTTCTTGGTACTTTTAGCAGGCAGTGCTACATTTCTGTTAACCTCTGTATAACTGATAAATTAGGAAAGTTAAAACTTTGTTCTTCCAAGAGCGCAACTTACAGTATATTCTTATATTCTTTCCCAGCTCAAAAAGAGCAGTGTTTAATAAAACGGCGTATTGGTTGTCAAATAATGATGTGCTGCTGCACCCATTAACCATTTAAATTCCTTTCACAGCTATTAATTATTTCCATTTGGGGCGTGAAGTAATCCTCTTTACACTTATGATGCACTAAATTAGCAAGTACTCAAAAAGACTCTCAAGCAGGTTGGCTTCTCAAAACCACACTTTGCCCTGTAATCATCTCCTCACTTATCAGTGTCCTACTTTAGATGATCATTTGTTGAGAAGCGCAAAATAATTTAAAACAGAAGCTTGAGATCATCTGCTGAGGTGGGTTTGAGGGCTAGCTCACTTGGTGGGCTCCCTGCCTTCCACCGTTGAGGTTTCCAAGCCCCATTACTAGCGTAGCATCCCTCTCCCTGATGTAATCAAAATAAAAAGGAAAGGCACGTATGAAAAAAAAAGAAGGTCATTGCTGTATATCTGCTTCTTTACAATCAAGCCTTACAAAGTGAATTTTGAACCAGAATTTGTTATTGGACTCAAATATGAGCTAAGATCCTTATGGCCTTCTCATTCATCATGTTTGGCCTCATAAAATAACTCTACATTTTATCATTATTAACAAGGTGGCTCCCTATAGAAGCATCTTTTCTTCAGAAAGAGCTTCTATTAGAAAAACTTGGGGAAAATGCTCTTATTCTGTCTCTTCTCCTTCCGTGTTTTTTTTTTCATTTTTGTTTCTTCTTTTCATTAAATGTTATCTTGATGCCTTCTTCTCATGTTGTTGGGGATGCTATGTAATATATCCATCATTGCAGGTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATGGTATGCACCTTATTCTAAGATGATAAATTCCGGTGTATAATCTTTGAAAAGCAGAACAAGTGAATTACTAATTTGTCTGATGGACTGTTTCAGAATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAGGCACACTTCTAAGCAGTACCAACTTTGTCAGACTTCCATTGAATATCAATCCTCAGTACTAAGTCTGTATTTGTCATTTGCAGGGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTA</genome_strand>
        <mrna_strand>GTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAG........................................................................................GTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATG.............................................................................................AATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAG...................................................................................GGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724343" ref_strand="+" ref_description="SGN-E724343 [FC23DC09]">
      <seq>ttttagtctcttttttatcacaacactctgaattagtgataattggaaaatggaaggggaagaaggcgtattaatgcgggggcgggtagagattgatatgcgtcagccttttcagtctgtgaaggaagcagttatgttgtttggggaaaaggttttagccggagaaattcatgctaagcaacttcaacaaataaatcatgagatttgtactgatgaacataacaagtgaaggtaacttaatggtgcacaaatgacggtgcctataacttagactgataagttatatgtgtatctctatatactatgaaacttattatgatgttcaacgtcaatggcggacctatgtagtgacttatgggtgcttaagcacccagtgccttttgtgacaacatcattatttctgtacataatttaataattcactgaaatatatatcaattgagcaccccattatatgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="69908" stop="68692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69608" g_stop="69419" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69418" i_stop="69265" i_length="154">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.552" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69264" g_stop="68989" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="466" r_length="276" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-E724343" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69608" e_stop="69419"/>
          <exon e_start="69264" e_stop="68989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTCTCTTTTTTATCACAACACTCTGAATTAGTGATAATTGGAAAATGGAAGGGGAAGAAGGCGTAGTAGTGCGGGGGCGGGTAGAGATTGATATGCGTCAGCCTTTTCAGTCTGTGAAGGAAGCAGTTATGTTGTTTGGGGAAAAGGTTTTAGCCGGAGAAATTCATGCTAAGCAACTTCAACAGGTTTTTTTTTTCCTTCTTTAATTTACTTTATAATTTGGTCAGAGTTTGAGTCTATATGCTTCCACAATAAAACATGCAAATATGATTTTAAACTGTATATAAATAATTGTTTCTTTTTTATAATTCTATTAAGTCACTTAAAAGATATTTACAGATAAATCATGAGATTTGTACTGATGAACATAACAAGTGAAGGTAACTTAATGGTGCACAAATGACGGTGCCTATAACTTAGACTGATAAGTTATATGTGTATCTCTATATACTATGAAACTTATTATGATGTTCAACGTCAATGGCGGACCTATGTAGTGACTTATGGGTGCTTAAGCACCCAGTGCCTTTTGTGACAACATCATTATTTCTGTACATAATTTAATAATTCACTGAAATATATATCAATTGAGCACCCCATTATATGTAGAAATTT</genome_strand>
        <mrna_strand>TTTTAGTCTCTTTTTTATCACAACACTCTGAATTAGTGATAATTGGAAAATGGAAGGGGAAGAAGGCGTATTAATGCGGGGGCGGGTAGAGATTGATATGCGTCAGCCTTTTCAGTCTGTGAAGGAAGCAGTTATGTTGTTTGGGGAAAAGGTTTTAGCCGGAGAAATTCATGCTAAGCAACTTCAACAA..........................................................................................................................................................ATAAATCATGAGATTTGTACTGATGAACATAACAAGTGAAGGTAACTTAATGGTGCACAAATGACGGTGCCTATAACTTAGACTGATAAGTTATATGTGTATCTCTATATACTATGAAACTTATTATGATGTTCAACGTCAATGGCGGACCTATGTAGTGACTTATGGGTGCTTAAGCACCCAGTGCCTTTTGTGACAACATCATTATTTCTGTACATAATTTAATAATTCACTGAAATATATATCAATTGAGCACCCCATTATATGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="70100" stop="70846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70400" g_stop="70546" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>147</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70400" e_stop="70546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATTTATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTC</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>45</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2452" PGL_stop="7211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2452" e_stop="2732"/>
            <exon e_start="5657" e_stop="5709"/>
            <exon e_start="5782" e_stop="5848"/>
            <exon e_start="5922" e_stop="5978"/>
            <exon e_start="6463" e_stop="6788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2452" e_stop="2732" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5657" e_stop="5709" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5782" e_stop="5848" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5922" e_stop="5978" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6463" e_stop="6788" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552347" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2492" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2492" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2492" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2493" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2493" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2494" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2498" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2508" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2519" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2678" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5802" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6491" stop="6731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCATTGTGGTTAAGCATTTGTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA : GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG : GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG : GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</gDNA_template>
            <first_frame> *  S  L  W  L  S  I  C  L  D  S  V  T  V  E  E  A  A  L  P  T  G  H  *  P  A  T  L  G  L  L  R  S  K  E  S  G  R  N  Q  P  *  V  G  A  W  A  Y  R  *  S  F  Y  M  K  R  Q  G  I  *  *  Q  *  R  *  R  V  E  S  C  T  E  E  V  W  W  S  A  R  I  T  G  I  A  N  S  R  A  S  L  T  L  P  K :   M  G  E  C  R  N  *  S  M  F  S  F  E  A  A  K  S   : G  S  *  *  F  L  I  C  L  R  M  L  P  C  S  S  G  *  K  Q  E  S  R :   E  K  V  H  H  L  V  L  V  G  D  V  L  L  L  C  E  L  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  L  C  *  E  I  W  I  S  P  V  L  H  F  F  T  L  G  A  P  </first_frame>
            <second_frame>  D  H  C  G  *  A  F  V  *  T  L  S  Q  *  K  K  L  H  S  P  L  V  T  N  Q  Q  R  *  V  Y  *  E  V  R  K  A  G  G  I  S  H  E  S  E  L  G  H  T  G  E  A  S  T  *  S  D  R  A  Y  S  D  S  R  D  E  E  W  R  A  V  Q  R  K  Y  G  G  V  R  G  *  L  E  L  P  T  R  E  H  H  L  H  C  Q   : R  W  E  S  V  A  T  R  A  C  F  H  S  R  Q  Q  S  Q  :  V  H  D  N  S  *  Y  A  *  E  C  S  H  V  Q  A  A  R  S  K  N  Q   : G  K  R  Y  I  T  W  C  W  S  G  T  C  Y  C  Y  A  S  *   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T  C  V  K  K  Y  G  L  V  Q  F  F  T  F  S  P  W  V  P  Q </second_frame>
            <third_frame>   I  I  V  V  K  H  L  F  R  L  C  H  S  R  R  S  C  T  P  H  W  S  L  T  S  N  V  R  F  T  E  K  *  G  K  R  E  E  S  A  M  S  R  S  L  G  I  P  V  K  L  L  H  E  A  T  G  H  I  V  T  V  E  M  K  S  G  E  L  Y  R  G  S  M  V  E  C  E  D  N  W  N  C  Q  L  E  S  I  T  Y  T  A  K  :  D  G  R  V  S  Q  L  E  H  V  F  I  R  G  S  K  V  R :   F  M  I  I  P  D  M  L  K  N  A  P  M  F  K  R  L  E  A  R  I  K  :  G  K  G  T  S  L  G  V  G  R  G  R  A  I  A  M  R  A  K  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S  P  V  L  R  N  M  D  *  S  S  S  S  L  F  H  P  G  C  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2553" stop="2732"/>
                    <exon start="5657" stop="5709"/>
                    <exon start="5782" stop="5848"/>
                    <exon start="5922" stop="5978"/>
                    <exon start="6463" stop="6525"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKREESAMSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQLEHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKGKGTSLGVGRGRAIAMRAKAQAAGRGAPPGRGTVPPVRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2488" e_stop="2732"/>
            <exon e_start="5657" e_stop="5709"/>
            <exon e_start="5782" e_stop="5848"/>
            <exon e_start="5929" e_stop="5978"/>
            <exon e_start="6463" e_stop="6731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2488" e_stop="2732" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5657" e_stop="5709" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5782" e_stop="5848" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.820">
            <gDNA_intron_boundary i_start="5849" i_stop="5928" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5929" e_stop="5978" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="6463" e_stop="6731" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2488" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5929" stop="5978"/>
              <exon start="6463" stop="6645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2488" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5929" stop="5978"/>
              <exon start="6463" stop="6553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6491" stop="6731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA : GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG : GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG : GTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACC</gDNA_template>
            <first_frame> T  V  E  E  A  A  L  P  T  G  H  *  P  A  T  L  G  L  L  R  S  K  E  S  G  R  N  Q  P  *  V  G  A  W  A  Y  R  *  S  F  Y  M  K  R  Q  G  I  *  *  Q  *  R  *  R  V  E  S  C  T  E  E  V  W  W  S  A  R  I  T  G  I  A  N  S  R  A  S  L  T  L  P  K :   M  G  E  C  R  N  *  S  M  F  S  F  E  A  A  K  S   : G  S  *  *  F  L  I  C  L  R  M  L  P  C  S  S  G  *  K  Q  E  S  R :   Y  I  T  W  C  W  S  G  T  C  Y  C  Y  A  S  *   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T </first_frame>
            <second_frame>  Q  *  K  K  L  H  S  P  L  V  T  N  Q  Q  R  *  V  Y  *  E  V  R  K  A  G  G  I  S  H  E  S  E  L  G  H  T  G  E  A  S  T  *  S  D  R  A  Y  S  D  S  R  D  E  E  W  R  A  V  Q  R  K  Y  G  G  V  R  G  *  L  E  L  P  T  R  E  H  H  L  H  C  Q   : R  W  E  S  V  A  T  R  A  C  F  H  S  R  Q  Q  S  Q  :  V  H  D  N  S  *  Y  A  *  E  C  S  H  V  Q  A  A  R  S  K  N  Q   : G  T  S  L  G  V  G  R  G  R  A  I  A  M  R  A  K  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S   </second_frame>
            <third_frame>   S  R  R  S  C  T  P  H  W  S  L  T  S  N  V  R  F  T  E  K  *  G  K  R  E  E  S  A  M  S  R  S  L  G  I  P  V  K  L  L  H  E  A  T  G  H  I  V  T  V  E  M  K  S  G  E  L  Y  R  G  S  M  V  E  C  E  D  N  W  N  C  Q  L  E  S  I  T  Y  T  A  K  :  D  G  R  V  S  Q  L  E  H  V  F  I  R  G  S  K  V  R :   F  M  I  I  P  D  M  L  K  N  A  P  M  F  K  R  L  E  A  R  I  K  :  V  H  H  L  V  L  V  G  D  V  L  L  L  C  E  L  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2553" stop="2732"/>
                    <exon start="5657" stop="5709"/>
                    <exon start="5782" stop="5848"/>
                    <exon start="5929" stop="5978"/>
                    <exon start="6463" stop="6517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKREESAMSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQLEHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKVHHLVLVGDVLLLCELKLRLLVVEHHLVGVLCHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6388" e_stop="6392"/>
            <exon e_start="6463" e_stop="6773"/>
            <exon e_start="7192" e_stop="7211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="0.600"/>
          <exon-intron don_prob="0.000" acc_prob="0.445" e_score="0.977"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="6388" e_stop="6392" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6393" i_stop="6462" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="6463" e_stop="6773" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.445">
            <gDNA_intron_boundary i_start="6774" i_stop="7191" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="0.550">
            <gDNA_exon_boundary e_start="7192" e_stop="7211" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6388" stop="6392"/>
              <exon start="6463" stop="6773"/>
              <exon start="7192" stop="7211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6491" stop="6731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCA : GAGGAGAATAAGTGAATAAA</gDNA_template>
            <first_frame> H  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  L  C  *  E  I  W  I  S  P  V  L  H  F  F   : R  G  E  *  V  N  K </first_frame>
            <second_frame>  I   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T  C  V  K  K  Y  G  L  V  Q  F  F  T  F  S  :  E  E  N  K  *  I   </second_frame>
            <third_frame>   *  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S  P  V  L  R  N  M  D  *  S  S  S  S  L  F  Q :   R  R  I  S  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0057H03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11951" PGL_stop="11575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11951" e_stop="11575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11951" e_stop="11575" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11951" stop="11575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</gDNA_template>
            <first_frame> N  I  N  N  F  S  F  *  N  N  N  K  M  G  L  K  K  T  S  S  S  K  Q  Q  T  A  A  L  K  Q  M  I  K  R  C  S  S  F  G  K  N  E  N  N  G  F  P  H  D  V  P  K  G  H  F  V  V  Y  V  G  E  N  R  S  R  Y  I  I  P  I  S  W  L  T  Y  P  Q  F  Q  N  L  L  Q  R  A  E  E  E  F  G  F  S  H  D  M  G  I  T  I  P  C  H  E  H  D  F  C  S  L  I  S  M  F  R  *  N  N  K  I  *  S  S  F  F  L   </first_frame>
            <second_frame>  I  L  I  I  S  L  S  K  T  T  T  K  W  V  *  R  K  Q  V  A  A  N  N  K  Q  Q  L  *  N  K  *  S  K  D  V  L  V  L  E  K  M  R  I  M  V  S  H  M  M  F  Q  K  D  I  L  L  C  T  L  E  K  I  E  V  D  I  *  Y  L  F  L  G  *  H  I  L  N  F  K  I  C  F  K  E  L  K  K  N  L  D  L  V  M  I  W  A  L  L  F  L  V  M  N  M  I  F  V  H  L  F  Q  C  L  D  E  T  T  K  Y  N  L  P  F  S  F  </second_frame>
            <third_frame>   Y  *  *  F  L  F  L  K  Q  Q  Q  N  G  F  K  E  N  K  *  Q  Q  T  T  N  S  S  F  E  T  N  D  Q  K  M  F  *  F  W  K  K  *  E  *  W  F  P  T  *  C  S  K  R  T  F  C  C  V  R  W  R  K  *  K  *  I  Y  N  T  Y  F  L  V  N  I  S  S  I  S  K  F  A  S  K  S  *  R  R  I  W  I  *  S  *  Y  G  H  Y  Y  S  L  S  *  T  *  F  L  F  T  Y  F  N  V  *  M  K  Q  Q  N  I  I  F  L  F  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11927" stop="11607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNNKMGLKKTSSSKQQTAALKQMIKRCSSFGKNENNGFPHDVPKGHFVVYVGENRSRYIIPISWLTYPQFQNLLQRAEEEFGFSHDMGITIPCHEHDFCSLISMFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29621" PGL_stop="25498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29621" e_stop="29497"/>
            <exon e_start="28636" e_stop="27743"/>
            <exon e_start="25798" e_stop="25498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.999"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29621" e_stop="29497" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29496" i_stop="28637" i_length="860"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="28636" e_stop="27743" e_length="894"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="27742" i_stop="25799" i_length="1944"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="25798" e_stop="25498" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29621" stop="29497"/>
              <exon start="28636" stop="28067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29619" stop="29497"/>
              <exon start="28636" stop="27901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29618" stop="29497"/>
              <exon start="28636" stop="28207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29618" stop="29497"/>
              <exon start="28636" stop="28268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29546" stop="29497"/>
              <exon start="28636" stop="28533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28471" stop="27755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28374" stop="28001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28373" stop="27812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28364" stop="27743"/>
              <exon start="25798" stop="25641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28317" stop="27775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28313" stop="27743"/>
              <exon start="25798" stop="25727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28000" stop="27743"/>
              <exon start="25798" stop="25498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAACAAAAAGCGATGAACTGCCTTTACCAAATTGGTTCGTAATGGAAATTTCCATTGATAATTTTCTATGAGACTGTAAGCATCATCATCATCAACACCCAAAATTATCCTCAATTTTGCGAG : GTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCG : GCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAGGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAAGTGCTTCAAATATTTAGTTCAGTGTGTTTAGACCCTTTGCTTCTTTTCGTGTTTAATGTCACCTGCTTAAAAAGGTGAAGACTGCAAAACCTTATATCCAGTTTATGCAACTCTGAGTGTCTCATTGATAAAATGCATATTTA</gDNA_template>
            <first_frame> D  N  K  K  R  *  T  A  F  T  K  L  V  R  N  G  N  F  H  *  *  F  S  M  R  L  *  A  S  S  S  S  T  P  K  I  I  L  N  F  A  R :   F  L  N  S  H  Q  *  L  D  K  V  M  A  G  E  G  N  I  D  L  S  A  L  K  S  Q  L  T  Q  T  D  V  T  W  K  L  E  M  E  K  S  Q  S  Q  V  D  A  L  Q  A  K  L  L  E  V  K  A  S  I  Q  G  S  E  E  D  T  K  K  E  L  D  V  L  W  H  R  V  R  T  A  T  T  L  M  T  Y  L  K  A  K  A  R  V  V  A  V  P  D  L  A  H  S  S  C  G  I  K  E  L  D  G  V  G  I  V  D  K  N  G  I  P  L  S  S  W  T  R  D  V  D  L  S  S  F  N  D  A  D  D  E  L  W  I  R  L  S  S  K  H  G  Q  L  D  E  Q  D  G  S  Y  M  S  E  L  L  R  S  V  Q  L  V  T  D  V  M  E  S  L  V  K  R  I  I  M  A  E  S  E  T  A  I  E  K  D  K  V  T  V  G  E  E  E  I  K  R  K  T  L  L  I  E  N  M  S  I  K  L  E  E  M  E  R  F  A  L  G  T  N  L  I  L  T  E  M  R  Q  R  V  E  D  L  V  E  E  T  S  R  Q  R  Q  R  A  A  E  N  E  Q  E  L  C  R  V  K  T  D  F  E  S  L  K  S  Y  V  S  N  L  V  S  V  R  E  T  I  L  S  S  E  K  Q  F  Q  T  I  E  R  L  F  E  R :   L  V  A  K  S  T  Q  L  E  S  E  K  T  Q  K  E  A  E  V  E  K  L  M  E  E  N  V  R  L  T  A  L  L  D  K  K  E  A  Q  L  L  A  M  N  E  Q  C  K  V  M  A  L  S  A  S  N  I  *  F  S  V  F  R  P  F  A  S  F  R  V  *  C  H  L  L  K  K  V  K  T  A  K  P  Y  I  Q  F  M  Q  L  *  V  S  H  *  *  N  A  Y  L </first_frame>
            <second_frame>  T  T  K  S  D  E  L  P  L  P  N  W  F  V  M  E  I  S  I  D  N  F  L  *  D  C  K  H  H  H  H  Q  H  P  K  L  S  S  I  L  R   : G  S  *  T  H  I  S  D  L  I  R  *  W  R  G  R  E  I  L  I  S  Q  L  *  N  P  N  *  L  K  L  T  L  L  G  S  *  R  W  R  K  A  S  P  K  W  M  L  Y  K  Q  N  C  W  R  *  K  L  L  F  R  D  Q  K  K  I  Q  R  R  S  *  M  F  Y  G  I  E  *  E  L  L  Q  H  *  *  R  T  *  K  L  K  P  E  S  W  L  F  Q  I  W  P  I  P  H  A  A  S  K  N  *  M  E  W  V  L  L  I  K  M  V  Y  H  Y  P  V  G  L  G  M  L  I  S  H  L  L  M  M  L  M  M  N  Y  G  L  D  F  R  V  N  M  V  N  L  M  N  K  M  D  L  I  *  V  N  Y  S  E  V  Y  N  W  L  Q  M  L  W  K  V  L  S  R  G  L  *  W  R  N  L  K  L  L  *  R  K  T  R  *  Q  *  V  K  K  R  L  K  G  R  R  S  L  L  K  T  C  L  L  S  *  R  K  W  K  D  L  L  W  V  Q  I  L  S  *  L  R  C  G  R  E  L  K  I  W  L  K  K  L  L  D  R  G  R  E  L  Q  K  M  S  R  S  F  V  V  L  R  P  T  L  S  L  *  N  P  M  S  V  I  S  L  V  *  E  K  Q  F  Y  H  Q  K  S  N  S  R  Q  L  K  G  F  L  S   : G  W  S  P  S  Q  H  N  W  R  V  R  R  R  R  K  R  L  K  *  K  N  *  W  K  K  M  *  G  *  L  L  C  L  I  R  K  R  H  S  F  W  L  *  M  N  S  A  K  L  W  R  *  V  L  Q  I  F  S  S  V  C  L  D  P  L  L  L  F  V  F  N  V  T  C  L  K  R  *  R  L  Q  N  L  I  S  S  L  C  N  S  E  C  L  I  D  K  M  H  I   </second_frame>
            <third_frame>   Q  Q  K  A  M  N  C  L  Y  Q  I  G  S  *  W  K  F  P  L  I  I  F  Y  E  T  V  S  I  I  I  I  N  T  Q  N  Y  P  Q  F  C  E  :  V  P  E  L  T  S  V  T  *  *  G  D  G  G  G  G  K  Y  *  S  L  S  F  K  I  P  I  D  S  N  *  R  Y  L  E  A  R  D  G  E  K  P  V  P  S  G  C  F  T  S  K  T  V  G  G  K  S  F  Y  S  G  I  R  R  R  Y  K  E  G  V  R  C  S  M  A  *  S  K  N  C  Y  N  I  D  D  V  L  E  S  *  S  Q  S  R  G  C  S  R  F  G  P  F  L  M  R  H  Q  R  T  R  W  S  G  Y  C  *  *  K  W  Y  T  I  I  Q  L  D  *  G  C  *  S  L  I  F  *  *  C  *  *  *  I  M  D  *  T  F  E  *  T  W  S  T  *  *  T  R  W  I  L  Y  E  *  I  T  Q  K  C  T  I  G  Y  R  C  Y  G  K  S  C  Q  E  D  Y  N  G  G  I  *  N  C  Y  R  E  R  Q  G  N  S  R  *  R  R  D  *  K  E  D  A  P  Y  *  K  H  V  Y  *  V  R  G  N  G  K  I  C  S  G  Y  K  S  Y  P  D  *  D  A  A  E  S  *  R  F  G  *  R  N  F  *  T  E  A  E  S  C  R  K  *  A  G  A  L  S  C  *  D  R  L  *  V  S  K  I  L  C  Q  *  S  R  *  C  E  R  N  N  S  I  I  R  K  A  I  P  D  N  *  K  A  F  *  A  :  A  G  R  Q  V  N  T  T  G  E  *  E  D  A  E  R  G  *  S  R  K  T  D  G  R  K  C  E  V  D  C  S  A  *  *  E  R  G  T  A  F  G  Y  E  *  T  V  Q  S  Y  G  V  K  C  F  K  Y  L  V  Q  C  V  *  T  L  C  F  F  S  C  L  M  S  P  A  *  K  G  E  D  C  K  T  L  Y  P  V  Y  A  T  L  S  V  S  L  I  K  C  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28614" stop="27743"/>
                    <exon start="25798" stop="25624"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDKVMAGEGNIDLSALKSQLTQTDVTWKLEMEKSQSQVDALQAKLLEVKASIQGSEEDTKKELDVLWHRVRTATTLMTYLKAKARVVAVPDLAHSSCGIKELDGVGIVDKNGIPLSSWTRDVDLSSFNDADDELWIRLSSKHGQLDEQDGSYMSELLRSVQLVTDVMESLVKRIIMAESETAIEKDKVTVGEEEIKRKTLLIENMSIKLEEMERFALGTNLILTEMRQRVEDLVEETSRQRQRAAENEQELCRVKTDFESLKSYVSNLVSVRETILSSEKQFQTIERLFERLVAKSTQLESEKTQKEAEVEKLMEENVRLTALLDKKEAQLLAMNEQCKVMALSASNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29083" e_stop="27743"/>
            <exon e_start="25798" e_stop="25498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.999"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="29083" e_stop="27743" e_length="1341"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="27742" i_stop="25799" i_length="1944"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="25798" e_stop="25498" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28471" stop="27755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28374" stop="28001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28373" stop="27812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28364" stop="27743"/>
              <exon start="25798" stop="25641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28317" stop="27775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28313" stop="27743"/>
              <exon start="25798" stop="25727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28000" stop="27743"/>
              <exon start="25798" stop="25498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCG : GCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAGGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAAGTGCTTCAAATATTTAGTTCAGTGTGTTTAGACCCTTTGCTTCTTTTCGTGTTTAATGTCACCTGCTTAAAAAGGTGAAGACTGCAAAACCTTATATCCAGTTTATGCAACTCTGAGTGTCTCATTGATAAAATGCATATTTA</gDNA_template>
            <first_frame> *  C  L  N  F  L  P  V  C  F  V  L  F  *  P  W  E  S  T  V  R  H  E  F  V  *  L  Y  N  V  L  N  K  L  L  S  G  N  A  V  F  V  V  Y  C  E  *  N  *  T  N  S  W  G  I  A  K  N  M  V  M  D  L  L  F  F  I  Q  C  H  G  N  S  S  T  S  F  K  R  V  Q  L  N  L  F  *  S  E  Y  C  A  *  M  K  S  L  *  K  N  F  Y  T  M  G  L  F  Y  P  K  V  E  N  C  S  V  V  V  R  V  K  V  L  I  *  F  P  C  G  P  Y  *  L  S  S  T  S  Y  *  N  P  M  F  L  K  H  L  I  F  *  V  P  E  L  T  S  V  T  *  *  G  D  G  G  G  G  K  Y  *  S  L  S  F  K  I  P  I  D  S  N  *  R  Y  L  E  A  R  D  G  E  K  P  V  P  S  G  C  F  T  S  K  T  V  G  G  K  S  F  Y  S  G  I  R  R  R  Y  K  E  G  V  R  C  S  M  A  *  S  K  N  C  Y  N  I  D  D  V  L  E  S  *  S  Q  S  R  G  C  S  R  F  G  P  F  L  M  R  H  Q  R  T  R  W  S  G  Y  C  *  *  K  W  Y  T  I  I  Q  L  D  *  G  C  *  S  L  I  F  *  *  C  *  *  *  I  M  D  *  T  F  E  *  T  W  S  T  *  *  T  R  W  I  L  Y  E  *  I  T  Q  K  C  T  I  G  Y  R  C  Y  G  K  S  C  Q  E  D  Y  N  G  G  I  *  N  C  Y  R  E  R  Q  G  N  S  R  *  R  R  D  *  K  E  D  A  P  Y  *  K  H  V  Y  *  V  R  G  N  G  K  I  C  S  G  Y  K  S  Y  P  D  *  D  A  A  E  S  *  R  F  G  *  R  N  F  *  T  E  A  E  S  C  R  K  *  A  G  A  L  S  C  *  D  R  L  *  V  S  K  I  L  C  Q  *  S  R  *  C  E  R  N  N  S  I  I  R  K  A  I  P  D  N  *  K  A  F  *  A  :  A  G  R  Q  V  N  T  T  G  E  *  E  D  A  E  R  G  *  S  R  K  T  D  G  R  K  C  E  V  D  C  S  A  *  *  E  R  G  T  A  F  G  Y  E  *  T  V  Q  S  Y  G  V  K  C  F  K  Y  L  V  Q  C  V  *  T  L  C  F  F  S  C  L  M  S  P  A  *  K  G  E  D  C  K  T  L  Y  P  V  Y  A  T  L  S  V  S  L  I  K  C  I  F  </first_frame>
            <second_frame>  D  V  *  T  S  C  Q  F  V  L  Y  F  S  S  L  G  K  A  Q  F  A  M  N  L  Y  D  F  I  M  F  L  I  N  F  Y  L  E  M  L  S  L  W  C  I  V  N  E  I  R  L  I  P  G  A  L  Q  R  T  W  *  W  I  Y  Y  S  L  S  N  V  M  G  I  P  Q  Q  V  L  N  E  C  S  L  T  F  F  N  L  N  I  V  L  E  *  N  H  C  R  R  I  F  I  R  W  A  F  F  T  R  R  L  R  T  A  V  W  L  L  E  L  K  F  *  Y  D  S  H  V  V  H  I  N  C  L  L  L  V  T  K  T  Q  C  S  *  N  I  *  F  F  R  F  L  N  S  H  Q  *  L  D  K  V  M  A  G  E  G  N  I  D  L  S  A  L  K  S  Q  L  T  Q  T  D  V  T  W  K  L  E  M  E  K  S  Q  S  Q  V  D  A  L  Q  A  K  L  L  E  V  K  A  S  I  Q  G  S  E  E  D  T  K  K  E  L  D  V  L  W  H  R  V  R  T  A  T  T  L  M  T  Y  L  K  A  K  A  R  V  V  A  V  P  D  L  A  H  S  S  C  G  I  K  E  L  D  G  V  G  I  V  D  K  N  G  I  P  L  S  S  W  T  R  D  V  D  L  S  S  F  N  D  A  D  D  E  L  W  I  R  L  S  S  K  H  G  Q  L  D  E  Q  D  G  S  Y  M  S  E  L  L  R  S  V  Q  L  V  T  D  V  M  E  S  L  V  K  R  I  I  M  A  E  S  E  T  A  I  E  K  D  K  V  T  V  G  E  E  E  I  K  R  K  T  L  L  I  E  N  M  S  I  K  L  E  E  M  E  R  F  A  L  G  T  N  L  I  L  T  E  M  R  Q  R  V  E  D  L  V  E  E  T  S  R  Q  R  Q  R  A  A  E  N  E  Q  E  L  C  R  V  K  T  D  F  E  S  L  K  S  Y  V  S  N  L  V  S  V  R  E  T  I  L  S  S  E  K  Q  F  Q  T  I  E  R  L  F  E  R :   L  V  A  K  S  T  Q  L  E  S  E  K  T  Q  K  E  A  E  V  E  K  L  M  E  E  N  V  R  L  T  A  L  L  D  K  K  E  A  Q  L  L  A  M  N  E  Q  C  K  V  M  A  L  S  A  S  N  I  *  F  S  V  F  R  P  F  A  S  F  R  V  *  C  H  L  L  K  K  V  K  T  A  K  P  Y  I  Q  F  M  Q  L  *  V  S  H  *  *  N  A  Y  L </second_frame>
            <third_frame>   M  S  K  L  P  A  S  L  F  C  T  F  L  A  L  G  K  H  S  S  P  *  I  C  M  T  L  *  C  S  *  *  T  F  I  W  K  C  C  L  C  G  V  L  *  M  K  L  D  *  F  L  G  H  C  K  E  H  G  D  G  F  I  I  L  Y  P  M  S  W  E  F  L  N  K  F  *  T  S  A  A  *  P  F  L  I  *  I  L  C  L  N  E  I  T  V  E  E  F  L  Y  D  G  P  F  L  P  E  G  *  E  L  Q  C  G  C  *  S  *  S  F  D  M  I  P  M  W  S  I  L  T  V  F  Y  *  L  L  K  P  N  V  P  K  T  F  N  F  L  G  S  *  T  H  I  S  D  L  I  R  *  W  R  G  R  E  I  L  I  S  Q  L  *  N  P  N  *  L  K  L  T  L  L  G  S  *  R  W  R  K  A  S  P  K  W  M  L  Y  K  Q  N  C  W  R  *  K  L  L  F  R  D  Q  K  K  I  Q  R  R  S  *  M  F  Y  G  I  E  *  E  L  L  Q  H  *  *  R  T  *  K  L  K  P  E  S  W  L  F  Q  I  W  P  I  P  H  A  A  S  K  N  *  M  E  W  V  L  L  I  K  M  V  Y  H  Y  P  V  G  L  G  M  L  I  S  H  L  L  M  M  L  M  M  N  Y  G  L  D  F  R  V  N  M  V  N  L  M  N  K  M  D  L  I  *  V  N  Y  S  E  V  Y  N  W  L  Q  M  L  W  K  V  L  S  R  G  L  *  W  R  N  L  K  L  L  *  R  K  T  R  *  Q  *  V  K  K  R  L  K  G  R  R  S  L  L  K  T  C  L  L  S  *  R  K  W  K  D  L  L  W  V  Q  I  L  S  *  L  R  C  G  R  E  L  K  I  W  L  K  K  L  L  D  R  G  R  E  L  Q  K  M  S  R  S  F  V  V  L  R  P  T  L  S  L  *  N  P  M  S  V  I  S  L  V  *  E  K  Q  F  Y  H  Q  K  S  N  S  R  Q  L  K  G  F  L  S   : G  W  S  P  S  Q  H  N  W  R  V  R  R  R  R  K  R  L  K  *  K  N  *  W  K  K  M  *  G  *  L  L  C  L  I  R  K  R  H  S  F  W  L  *  M  N  S  A  K  L  W  R  *  V  L  Q  I  F  S  S  V  C  L  D  P  L  L  L  F  V  F  N  V  T  C  L  K  R  *  R  L  Q  N  L  I  S  S  L  C  N  S  E  C  L  I  D  K  M  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28614" stop="27743"/>
                    <exon start="25798" stop="25624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDKVMAGEGNIDLSALKSQLTQTDVTWKLEMEKSQSQVDALQAKLLEVKASIQGSEEDTKKELDVLWHRVRTATTLMTYLKAKARVVAVPDLAHSSCGIKELDGVGIVDKNGIPLSSWTRDVDLSSFNDADDELWIRLSSKHGQLDEQDGSYMSELLRSVQLVTDVMESLVKRIIMAESETAIEKDKVTVGEEEIKRKTLLIENMSIKLEEMERFALGTNLILTEMRQRVEDLVEETSRQRQRAAENEQELCRVKTDFESLKSYVSNLVSVRETILSSEKQFQTIERLFERLVAKSTQLESEKTQKEAEVEKLMEENVRLTALLDKKEAQLLAMNEQCKVMALSASNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34788" PGL_stop="33716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34788" e_stop="34579"/>
            <exon e_start="34493" e_stop="34210"/>
            <exon e_start="33853" e_stop="33716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.614" acc_prob="0.994" e_score="0.952"/>
          <exon-intron don_prob="0.995" acc_prob="0.580" e_score="0.982"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="34788" e_stop="34579" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.614" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34578" i_stop="34494" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="34493" e_stop="34210" e_length="284"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.580">
            <gDNA_intron_boundary i_start="34209" i_stop="33854" i_length="356"/>
          </intron>
          <exon e_serial="3" e_score="0.928">
            <gDNA_exon_boundary e_start="33853" e_stop="33716" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34788" stop="34579"/>
              <exon start="34493" stop="34210"/>
              <exon start="33853" stop="33716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAATGGAGAAAGAACCACACAAGGATAAAAGATGGGTATGGAGGGGGCTGATCCTGGTGATCACGGCTCTTGTTCTTGCTGCAGTTTTAATCAGTTTCCGAAAATATTTTCATCCGTCTAATTCTTCAGAGGCAGATTCTCATCAAGTGGTTGAAAAATATGCAAATGCTCTTAGCATTGCTATGCAATTCTTCGACGTTCAGAAGT : CTGGAAAATTGGTGAATAATAAGATTGCTTGGAGAGGAGATTCGGCTATGGGAGATGGAAGTGAAGTTAATTTGGATTTAAGTAGAGGAATGTATGATGCTGGAGACCATGTGAAGTTTGGATTTCCAATGGCATTCACTGCTACAGTTTTATCATGGGCTATTTTGGAGTATGGAAACCACATGAACATGGTGAACGAGCTGGATAACGCCCATGAATCCCTCAAGTGGATCACTGATTTTCTTACAAATGCTCATCCTTCTGAGAATGTCCTGTATATTCAG : GTGGGAGACCCAAAGCTCGATCACACGTGCTGGGAGAGACCAGAGGCCATGACAGGAAAAAGGCCTCTTACACAAGTTAACACATCGTATCCAGGGACAGATGTTGCGGCTGAAAGTGCAGCAGCAATGGCGGCTGCA</gDNA_template>
            <first_frame> I  E  W  R  K  N  H  T  R  I  K  D  G  Y  G  G  G  *  S  W  *  S  R  L  L  F  L  L  Q  F  *  S  V  S  E  N  I  F  I  R  L  I  L  Q  R  Q  I  L  I  K  W  L  K  N  M  Q  M  L  L  A  L  L  C  N  S  S  T  F  R  S  :  L  E  N  W  *  I  I  R  L  L  G  E  E  I  R  L  W  E  M  E  V  K  L  I  W  I  *  V  E  E  C  M  M  L  E  T  M  *  S  L  D  F  Q  W  H  S  L  L  Q  F  Y  H  G  L  F  W  S  M  E  T  T  *  T  W  *  T  S  W  I  T  P  M  N  P  S  S  G  S  L  I  F  L  Q  M  L  I  L  L  R  M  S  C  I  F  R :   W  E  T  Q  S  S  I  T  R  A  G  R  D  Q  R  P  *  Q  E  K  G  L  L  H  K  L  T  H  R  I  Q  G  Q  M  L  R  L  K  V  Q  Q  Q  W  R  L   </first_frame>
            <second_frame>  L  N  G  E  R  T  T  Q  G  *  K  M  G  M  E  G  A  D  P  G  D  H  G  S  C  S  C  C  S  F  N  Q  F  P  K  I  F  S  S  V  *  F  F  R  G  R  F  S  S  S  G  *  K  I  C  K  C  S  *  H  C  Y  A  I  L  R  R  S  E  V :   W  K  I  G  E  *  *  D  C  L  E  R  R  F  G  Y  G  R  W  K  *  S  *  F  G  F  K  *  R  N  V  *  C  W  R  P  C  E  V  W  I  S  N  G  I  H  C  Y  S  F  I  M  G  Y  F  G  V  W  K  P  H  E  H  G  E  R  A  G  *  R  P  *  I  P  Q  V  D  H  *  F  S  Y  K  C  S  S  F  *  E  C  P  V  Y  S   : G  G  R  P  K  A  R  S  H  V  L  G  E  T  R  G  H  D  R  K  K  A  S  Y  T  S  *  H  I  V  S  R  D  R  C  C  G  *  K  C  S  S  N  G  G  C  </second_frame>
            <third_frame>   *  M  E  K  E  P  H  K  D  K  R  W  V  W  R  G  L  I  L  V  I  T  A  L  V  L  A  A  V  L  I  S  F  R  K  Y  F  H  P  S  N  S  S  E  A  D  S  H  Q  V  V  E  K  Y  A  N  A  L  S  I  A  M  Q  F  F  D  V  Q  K   : S  G  K  L  V  N  N  K  I  A  W  R  G  D  S  A  M  G  D  G  S  E  V  N  L  D  L  S  R  G  M  Y  D  A  G  D  H  V  K  F  G  F  P  M  A  F  T  A  T  V  L  S  W  A  I  L  E  Y  G  N  H  M  N  M  V  N  E  L  D  N  A  H  E  S  L  K  W  I  T  D  F  L  T  N  A  H  P  S  E  N  V  L  Y  I  Q  :  V  G  D  P  K  L  D  H  T  C  W  E  R  P  E  A  M  T  G  K  R  P  L  T  Q  V  N  T  S  Y  P  G  T  D  V  A  A  E  S  A  A  A  M  A  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34783" stop="34579"/>
                    <exon start="34493" stop="34210"/>
                    <exon start="33853" stop="33716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEKEPHKDKRWVWRGLILVITALVLAAVLISFRKYFHPSNSSEADSHQVVEKYANALSIAMQFFDVQKSGKLVNNKIAWRGDSAMGDGSEVNLDLSRGMYDAGDHVKFGFPMAFTATVLSWAILEYGNHMNMVNELDNAHESLKWITDFLTNAHPSENVLYIQVGDPKLDHTCWERPEAMTGKRPLTQVNTSYPGTDVAAESAAAMAAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36050" PGL_stop="35262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36050" e_stop="35262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="36050" e_stop="35262" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36050" stop="35317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36026" stop="35262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36004" stop="35430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35975" stop="35600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35743" stop="35317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287480" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGAAAGCAAATGAAAAATGAACACAACGATGCTCTCTACCTACCCGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAACTTGAAATTGTCAACCTCTTTGAATACCCAATGACATAAGAAAATTTAAGATGGT</gDNA_template>
            <first_frame> P  E  S  K  *  K  M  N  T  T  M  L  S  T  Y  P  K  H  F  T  P  L  P  V  Q  L  F  S  K  S  Q  H  R  H  V  I  R  F  P  I  K  C  N  S  S  S  S  S  D  N  G  N  E  S  Q  P  N  T  V  E  I  R  I  R  R  R  P  S  K  R  Q  R  Q  K  E  E  E  M  I  N  A  G  K  Q  A  V  K  P  K  P  P  P  K  D  W  E  S  M  N  L  T  E  K  A  I  E  L  Y  V  G  E  K  G  L  L  F  W  L  N  K  F  A  Y  A  S  I  F  I  I  I  G  G  W  I  L  F  R  F  V  G  P  A  F  D  L  Y  Q  L  D  T  P  T  P  L  A  P  E  S  M  F  K  G  T  G  D  K  P  *  P  T  G  K  L  K  F  Q  K  K  F  S  L  *  L  L  Q  I  F  V  T  *  K  L  L  V  L  L  D  L  S  K  *  T  C  Q  L  D  T  I  Y  I  C  E  V  Q  R  *  Y  L  Y  K  L  C  E  N  I  C  I  Y  L  Y  K  *  N  M  K  Q  I  S  P  *  Y  Y  L  L  N  L  K  L  S  T  S  L  N  T  Q  *  H  K  K  I  *  D  G </first_frame>
            <second_frame>  L  K  A  N  E  K  *  T  Q  R  C  S  L  P  T  R  N  T  S  L  L  F  Q  Y  N  F  S  P  N  L  N  I  A  M  *  F  V  F  P  S  N  A  T  A  A  A  A  V  I  M  A  T  N  R  N  Q  T  R  W  R  F  E  S  E  D  V  R  Q  N  D  K  G  R  R  K  K  K  *  *  M  Q  G  N  K  L  L  N  L  N  L  H  Q  R  I  G  N  Q  *  I  *  L  R  R  Q  S  N  C  T  S  E  K  K  D  F  C  S  G  *  T  N  L  L  M  L  L  F  L  L  *  L  G  V  G  Y  F  F  D  L  L  V  L  H  L  T  F  T  S  W  I  L  L  L  L  L  L  L  N  L  C  L  K  V  Q  E  T  N  L  D  P  L  E  N  S  S  F  R  R  N  F  R  F  N  Y  S  K  F  L  *  L  E  S  Y  *  Y  Y  *  I  *  A  N  K  H  V  N  W  I  L  Y  I  F  V  K  F  N  D  D  T  C  I  S  Y  A  R  T  Y  V  Y  I  C  I  S  K  T  *  S  K  Y  P  L  N  T  I  C  *  T  *  N  C  Q  P  L  *  I  P  N  D  I  R  K  F  K  M   </second_frame>
            <third_frame>   *  K  Q  M  K  N  E  H  N  D  A  L  Y  L  P  E  T  L  H  S  S  S  S  T  T  F  L  Q  I  S  T  S  P  C  N  S  F  S  H  Q  M  Q  Q  Q  Q  Q  Q  *  *  W  Q  R  I  A  T  K  H  G  G  D  S  N  Q  K  T  S  V  K  T  T  K  A  E  G  R  R  N  D  K  C  R  E  T  S  C  *  T  *  T  S  T  K  G  L  G  I  N  E  S  N  *  E  G  N  R  I  V  R  R  R  K  R  T  F  V  L  A  K  Q  I  C  L  C  F  Y  F  Y  Y  N  W  G  L  D  T  F  S  I  C  W  S  C  I  *  P  L  P  V  G  Y  S  Y  S  S  C  S  *  I  Y  V  *  R  Y  R  R  Q  T  L  T  H  W  K  T  Q  V  S  E  E  I  F  A  L  I  T  P  N  F  C  N  L  K  V  I  S  T  T  R  F  K  Q  I  N  M  S  I  G  Y  Y  I  Y  L  *  S  S  T  M  I  L  V  *  V  M  R  E  H  M  Y  I  F  V  *  V  K  H  E  A  N  I  P  L  I  L  F  V  E  L  E  I  V  N  L  F  E  Y  P  M  T  *  E  N  L  R  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36035" stop="35547"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMNTTMLSTYPKHFTPLPVQLFSKSQHRHVIRFPIKCNSSSSSDNGNESQPNTVEIRIRRRPSKRQRQKEEEMINAGKQAVKPKPPPKDWESMNLTEKAIELYVGEKGLLFWLNKFAYASIFIIIGGWILFRFVGPAFDLYQLDTPTPLAPESMFKGTGDKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37849" PGL_stop="41053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37849" e_stop="38228"/>
            <exon e_start="40990" e_stop="41053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37849" e_stop="38228" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="38229" i_stop="40989" i_length="2761"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40990" e_stop="41053" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37849" stop="38108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37850" stop="38228"/>
              <exon start="40990" stop="41053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37850" stop="38219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204951" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGGAACTGAAAG : AGAGGACTTATACTACACCAACAAAGTGGATGAGGGGCAAAGGACGTGTGACAATCCAATTTGG</gDNA_template>
            <first_frame> Q  I  I  L  T  C  D  Y  P  E  S  E  D  V  M  G  *  Y  G  S  G  G  *  T  S  S  *  G  S  E  *  V  N  C  L  E  K  S  G  E  W  C  G  *  R  G  N  Y  *  S  G  E  *  A  K  N  R  I  V  K  G  E  T  R  V  H  *  I  L  *  C  E  E  E  K  G  F  H  M  F  G  E  G  E  G  E  N  C  E  Y  T  *  W  I  G  A  T  *  G  C  L  *  R  R  *  A  N  *  N  S  *  I  C  G  E  A  *  P  D  G  E  E  W  G  T  E  R :   E  D  L  Y  Y  T  N  K  V  D  E  G  Q  R  T  C  D  N  P  I  W </first_frame>
            <second_frame>  K  S  S  L  P  V  T  T  P  K  V  K  M  S  W  A  D  M  A  Q  E  D  E  L  Q  A  E  E  V  S  E  S  I  A  L  R  S  Q  V  N  G  V  A  E  E  E  I  T  N  P  E  S  K  Q  K  T  E  L  S  R  E  K  R  E  Y  I  R  F  C  N  V  K  R  K  K  D  F  I  C  L  E  R  V  R  G  K  I  V  N  I  L  D  G  L  E  L  H  K  G  V  F  S  A  A  E  Q  I  R  I  V  K  Y  A  E  K  L  D  Q  M  G  K  N  G  E  L  K   : E  R  T  Y  T  T  P  T  K  W  M  R  G  K  G  R  V  T  I  Q  F   </second_frame>
            <third_frame>   N  H  P  Y  L  *  L  P  R  K  *  R  C  H  G  L  I  W  L  R  R  M  N  F  K  L  R  K  *  V  S  Q  L  P  *  E  V  R  *  M  V  W  L  K  R  K  L  L  I  R  R  V  S  K  K  Q  N  C  Q  G  R  N  E  S  T  L  D  S  V  M  *  R  G  K  R  I  S  Y  V  W  R  G  *  G  G  K  L  *  I  Y  L  M  D  W  S  Y  I  R  V  S  L  A  P  L  S  K  L  E  *  L  N  M  R  R  S  L  T  R  W  G  R  M  G  N  *  K  :  R  G  L  I  L  H  Q  Q  S  G  *  G  A  K  D  V  *  Q  S  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37850" stop="38228"/>
                    <exon start="40990" stop="41051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSLPVTTPKVKMSWADMAQEDELQAEEVSESIALRSQVNGVAEEEITNPESKQKTELSREKREYIRFCNVKRKKDFICLERVRGKIVNILDGLELHKGVFSAAEQIRIVKYAEKLDQMGKNGELKERTYTTPTKWMRGKGRVTIQF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41468" PGL_stop="41962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41468" e_stop="41603"/>
            <exon e_start="41677" e_stop="41748"/>
            <exon e_start="41844" e_stop="41962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="0.919"/>
          <exon-intron don_prob="0.000" acc_prob="0.702" e_score="0.986"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="41468" e_stop="41603" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41604" i_stop="41676" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="41677" e_stop="41748" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.702">
            <gDNA_intron_boundary i_start="41749" i_stop="41843" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="41844" e_stop="41962" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41468" stop="41603"/>
              <exon start="41677" stop="41748"/>
              <exon start="41844" stop="41962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGACAATCATGATTTTGTGCGCCCATTTTGTACTGTTTCATTCCTTAGCGAGTGCAACATTGTGTTCGGATCCAACTTGAAAATAGTGGGTCCTGGTGAATTTGCTGGTGCGATTGCAATACCATTGCCAGTTGG : ATCTGTACTTGTCTTGAATGGAAATGGAGCTGATGTAGCTAAACACTGTGTGCCAGCTGTGCCTACTAAGAG : GATTTCAATCACATTTAGAAGAATGGATGAATCTAAAAGGCCAACTGGATATGTTCCCGAGCATGATTTACAAGGGTTGCAGCCCTTATCATATGAATCAGACTCGCAAAAGAAATCAA</gDNA_template>
            <first_frame> L  T  I  M  I  L  C  A  H  F  V  L  F  H  S  L  A  S  A  T  L  C  S  D  P  T  *  K  *  W  V  L  V  N  L  L  V  R  L  Q  Y  H  C  Q  L   : D  L  Y  L  S  *  M  E  M  E  L  M  *  L  N  T  V  C  Q  L  C  L  L  R   : G  F  Q  S  H  L  E  E  W  M  N  L  K  G  Q  L  D  M  F  P  S  M  I  Y  K  G  C  S  P  Y  H  M  N  Q  T  R  K  R  N  Q </first_frame>
            <second_frame>  *  Q  S  *  F  C  A  P  I  L  Y  C  F  I  P  *  R  V  Q  H  C  V  R  I  Q  L  E  N  S  G  S  W  *  I  C  W  C  D  C  N  T  I  A  S  W  :  I  C  T  C  L  E  W  K  W  S  *  C  S  *  T  L  C  A  S  C  A  Y  *  E  :  D  F  N  H  I  *  K  N  G  *  I  *  K  A  N  W  I  C  S  R  A  *  F  T  R  V  A  A  L  I  I  *  I  R  L  A  K  E  I   </second_frame>
            <third_frame>   D  N  H  D  F  V  R  P  F  C  T  V  S  F  L  S  E  C  N  I  V  F  G  S  N  L  K  I  V  G  P  G  E  F  A  G  A  I  A  I  P  L  P  V  G :   S  V  L  V  L  N  G  N  G  A  D  V  A  K  H  C  V  P  A  V  P  T  K  R :   I  S  I  T  F  R  R  M  D  E  S  K  R  P  T  G  Y  V  P  E  H  D  L  Q  G  L  Q  P  L  S  Y  E  S  D  S  Q  K  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41470" stop="41603"/>
                    <exon start="41677" stop="41748"/>
                    <exon start="41844" stop="41961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFAGAIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDESKRPTGYVPEHDLQGLQPLSYESDSQKKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47986" PGL_stop="49710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47986" e_stop="48408"/>
            <exon e_start="48514" e_stop="48611"/>
            <exon e_start="48927" e_stop="49413"/>
            <exon e_start="49702" e_stop="49710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.941" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.020" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="47986" e_stop="48408" e_length="423"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48409" i_stop="48513" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="48514" e_stop="48611" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.941">
            <gDNA_intron_boundary i_start="48612" i_stop="48926" i_length="315"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="48927" e_stop="49413" e_length="487"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.020">
            <gDNA_intron_boundary i_start="49414" i_stop="49701" i_length="288"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49702" e_stop="49710" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47986" stop="48408"/>
              <exon start="48514" stop="48611"/>
              <exon start="48927" stop="49413"/>
              <exon start="49702" stop="49710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATACATACATACATTTGTAGAGTTGTTGTTGTTTTATGATGGAACATCAACACAACATAGAAGATGGTGGTAAAAATAGTAACAACAGTTTCCTGTGCAGGCAAAGTAGTAGCCGTTGGACGCCAACGAGCGATCAGATAAGAATATTGAAGGATCTCTACTACAACAATGGAGTTAGGTCTCCAACTGCTGAACAGATTCAGAGGATATCTGCTAAGTTGAGACAGTACGGTAAGATTGAAGGCAAAAATGTGTTTTATTGGTTTCAGAACCATAAAGCTCGTGAAAGACAAAAGAAGAGGCTCATTGCTGCTGCCTCTGCCACTGATAATAATAATATCTCTTCCATGCAAATGATTCCACATCTTTGGAGATCTCCTGATGATCACCACAAGTACAACACTACTACTACTAATCCAG : GTGTTCAGTGTCCATCACCATCTTCACATGGGGTATTACCAGTGGTACAGACTGGAAACTATGGTTATGGAACTTTGGCTATGGAGAAGAGCTTTAGG : GAGTGTTCAATATCACCACCAGGTGGTAGTTATCATCAAAATTTGACATGGGTTGGTGTTGATCCTTACAACAATATGAGTACTACTTCTCCAGCAACTTACCCTTTTCTTGAAAAAAGCAACAACAAACACTATGAAGAAACCCTAGATGAAGAGCAAGAAGAAGAAAATTACCAAAGGGGTAACTCTGCTTTAGAAACTCTGTCACTTTTCCCCATGCATGAAGAGAACATCATCTCAAATTTCTGCATCAAACATCATGAATCTTCTGGAGGATGGTACCATTCTGATAATAACAATTTGGCTGCTCTTGAACTTACTCTCAACTCTTTCCCCTAAATTATGAACTAGTCTATCTTATGTTTGTAGTAAGTAAGTACTAATCTAATTTGGTATGTGCCAAGCTATTTGGACCTTATGGTAATGTTAATTAATCTTAATCTAAGTTGTACTAATATTATTAATTAAAGTATGGATAAGTTTATTA : AAAAAAAAA</gDNA_template>
            <first_frame> Y  I  H  T  Y  I  C  R  V  V  V  V  L  *  W  N  I  N  T  T  *  K  M  V  V  K  I  V  T  T  V  S  C  A  G  K  V  V  A  V  G  R  Q  R  A  I  R  *  E  Y  *  R  I  S  T  T  T  M  E  L  G  L  Q  L  L  N  R  F  R  G  Y  L  L  S  *  D  S  T  V  R  L  K  A  K  M  C  F  I  G  F  R  T  I  K  L  V  K  D  K  R  R  G  S  L  L  L  P  L  P  L  I  I  I  I  S  L  P  C  K  *  F  H  I  F  G  D  L  L  M  I  T  T  S  T  T  L  L  L  L  I  Q  :  V  F  S  V  H  H  H  L  H  M  G  Y  Y  Q  W  Y  R  L  E  T  M  V  M  E  L  W  L  W  R  R  A  L  G :   S  V  Q  Y  H  H  Q  V  V  V  I  I  K  I  *  H  G  L  V  L  I  L  T  T  I  *  V  L  L  L  Q  Q  L  T  L  F  L  K  K  A  T  T  N  T  M  K  K  P  *  M  K  S  K  K  K  K  I  T  K  G  V  T  L  L  *  K  L  C  H  F  S  P  C  M  K  R  T  S  S  Q  I  S  A  S  N  I  M  N  L  L  E  D  G  T  I  L  I  I  T  I  W  L  L  L  N  L  L  S  T  L  S  P  K  L  *  T  S  L  S  Y  V  C  S  K  *  V  L  I  *  F  G  M  C  Q  A  I  W  T  L  W  *  C  *  L  I  L  I  *  V  V  L  I  L  L  I  K  V  W  I  S  L  L  :  K  K  K </first_frame>
            <second_frame>  T  Y  I  H  T  F  V  E  L  L  L  F  Y  D  G  T  S  T  Q  H  R  R  W  W  *  K  *  *  Q  Q  F  P  V  Q  A  K  *  *  P  L  D  A  N  E  R  S  D  K  N  I  E  G  S  L  L  Q  Q  W  S  *  V  S  N  C  *  T  D  S  E  D  I  C  *  V  E  T  V  R  *  D  *  R  Q  K  C  V  L  L  V  S  E  P  *  S  S  *  K  T  K  E  E  A  H  C  C  C  L  C  H  *  *  *  *  Y  L  F  H  A  N  D  S  T  S  L  E  I  S  *  *  S  P  Q  V  Q  H  Y  Y  Y  *  S  R :   C  S  V  S  I  T  I  F  T  W  G  I  T  S  G  T  D  W  K  L  W  L  W  N  F  G  Y  G  E  E  L  *   : G  V  F  N  I  T  T  R  W  *  L  S  S  K  F  D  M  G  W  C  *  S  L  Q  Q  Y  E  Y  Y  F  S  S  N  L  P  F  S  *  K  K  Q  Q  Q  T  L  *  R  N  P  R  *  R  A  R  R  R  K  L  P  K  G  *  L  C  F  R  N  S  V  T  F  P  H  A  *  R  E  H  H  L  K  F  L  H  Q  T  S  *  I  F  W  R  M  V  P  F  *  *  *  Q  F  G  C  S  *  T  Y  S  Q  L  F  P  L  N  Y  E  L  V  Y  L  M  F  V  V  S  K  Y  *  S  N  L  V  C  A  K  L  F  G  P  Y  G  N  V  N  *  S  *  S  K  L  Y  *  Y  Y  *  L  K  Y  G  *  V  Y  * :   K  K   </second_frame>
            <third_frame>   H  T  Y  I  H  L  *  S  C  C  C  F  M  M  E  H  Q  H  N  I  E  D  G  G  K  N  S  N  N  S  F  L  C  R  Q  S  S  S  R  W  T  P  T  S  D  Q  I  R  I  L  K  D  L  Y  Y  N  N  G  V  R  S  P  T  A  E  Q  I  Q  R  I  S  A  K  L  R  Q  Y  G  K  I  E  G  K  N  V  F  Y  W  F  Q  N  H  K  A  R  E  R  Q  K  K  R  L  I  A  A  A  S  A  T  D  N  N  N  I  S  S  M  Q  M  I  P  H  L  W  R  S  P  D  D  H  H  K  Y  N  T  T  T  T  N  P   : G  V  Q  C  P  S  P  S  S  H  G  V  L  P  V  V  Q  T  G  N  Y  G  Y  G  T  L  A  M  E  K  S  F  R  :  E  C  S  I  S  P  P  G  G  S  Y  H  Q  N  L  T  W  V  G  V  D  P  Y  N  N  M  S  T  T  S  P  A  T  Y  P  F  L  E  K  S  N  N  K  H  Y  E  E  T  L  D  E  E  Q  E  E  E  N  Y  Q  R  G  N  S  A  L  E  T  L  S  L  F  P  M  H  E  E  N  I  I  S  N  F  C  I  K  H  H  E  S  S  G  G  W  Y  H  S  D  N  N  N  L  A  A  L  E  L  T  L  N  S  F  P  *  I  M  N  *  S  I  L  C  L  *  *  V  S  T  N  L  I  W  Y  V  P  S  Y  L  D  L  M  V  M  L  I  N  L  N  L  S  C  T  N  I  I  N  *  S  M  D  K  F  I   : K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48009" stop="48408"/>
                    <exon start="48514" stop="48611"/>
                    <exon start="48927" stop="49265"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCCCFMMEHQHNIEDGGKNSNNSFLCRQSSSRWTPTSDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKRLIAAASATDNNNISSMQMIPHLWRSPDDHHKYNTTTTNPGVQCPSPSSHGVLPVVQTGNYGYGTLAMEKSFRECSISPPGGSYHQNLTWVGVDPYNNMSTTSPATYPFLEKSNNKHYEETLDEEQEEENYQRGNSALETLSLFPMHEENIISNFCIKHHESSGGWYHSDNNNLAALELTLNSFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="60992" PGL_stop="57852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60992" e_stop="60924"/>
            <exon e_start="60835" e_stop="60744"/>
            <exon e_start="59805" e_stop="59705"/>
            <exon e_start="58708" e_stop="58608"/>
            <exon e_start="58514" e_stop="58448"/>
            <exon e_start="58364" e_stop="58265"/>
            <exon e_start="58182" e_stop="58069"/>
            <exon e_start="57963" e_stop="57852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.582" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.679" e_score="1.000"/>
          <exon-intron don_prob="0.425" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.440" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60992" e_stop="60924" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60923" i_stop="60836" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60835" e_stop="60744" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.582" acc_prob="0.836">
            <gDNA_intron_boundary i_start="60743" i_stop="59806" i_length="938"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59805" e_stop="59705" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59704" i_stop="58709" i_length="996"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58708" e_stop="58608" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.679">
            <gDNA_intron_boundary i_start="58607" i_stop="58515" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58514" e_stop="58448" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.425" acc_prob="0.993">
            <gDNA_intron_boundary i_start="58447" i_stop="58365" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58364" e_stop="58265" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58264" i_stop="58183" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58182" e_stop="58069" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.844" acc_prob="0.440">
            <gDNA_intron_boundary i_start="58068" i_stop="57964" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="0.946">
            <gDNA_exon_boundary e_start="57963" e_stop="57852" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60992" stop="60924"/>
              <exon start="60835" stop="60744"/>
              <exon start="59805" stop="59705"/>
              <exon start="58708" stop="58608"/>
              <exon start="58514" stop="58448"/>
              <exon start="58364" stop="58265"/>
              <exon start="58182" stop="58069"/>
              <exon start="57963" stop="57852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60981" stop="60924"/>
              <exon start="60835" stop="60744"/>
              <exon start="59805" stop="59705"/>
              <exon start="58708" stop="58608"/>
              <exon start="58514" stop="58448"/>
              <exon start="58364" stop="58324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCGCCGCCGGTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAG : GTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTAT : AGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAAC : GTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATG : AATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAG : GGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTATCTCTGGCTCACTTGATCGAACTGTTCTACTTTGGGATCAAAGGGCTGAGAAATGCCAG : GGCCTTCTTCGAGTGCAAGGAAGACCAGCTACTGCTTATGATGAGCAAGGCCTTGTATTTGCTATTGCTTTTGGAGGATATATAAGGATGTTTGATGCACGCTATTTCGACAAG : GGACCTTTTGAAATTTTCTCTGTTGGTGGAGATGTGTCTGATGCTAACAGCGTTAAGTTCAGTAACGATGGGAGACTTGTGCTTTTGACAACTAAGGATGGGCATATTCATG</gDNA_template>
            <first_frame> R  R  R  R  *  N  T  I  Q  K  N  L  Q  L  A  C  Y  R  R  T  P  W  Q  :  V  D  Q  L  T  E  K  T  R  S  H  L  R  P  L  K  K  F  Y  R  A  W  K  S  A  *  H  F  A  T  I :   V  V  E  S  V  Q  W  I  S  I  R  H  Q  I  L  W  *  Q  P  V  M  M  S  P  Y  V  Y  M  M  L  Q  M  Q   : R  V  *  K  L  L  I  A  K  S  T  G  S  I  W  L  A  S  L  L  I  Q  R  L  *  Y  T  P  P  R  M  V  G  M  :  N  L  Y  D  F  F  H  C  M  T  T  S  T  C  G  I  S  R  V  I  V  T   : G  S  S  L  L  A  Y  A  I  E  R  S  I  L  S  L  A  H  L  I  E  L  F  Y  F  G  I  K  G  L  R  N  A  R :   A  F  F  E  C  K  E  D  Q  L  L  L  M  M  S  K  A  L  Y  L  L  L  L  L  E  D  I  *  G  C  L  M  H  A  I  S  T  R :   D  L  L  K  F  S  L  L  V  E  M  C  L  M  L  T  A  L  S  S  V  T  M  G  D  L  C  F  *  Q  L  R  M  G  I  F  M </first_frame>
            <second_frame>  V  A  A  G  E  I  Q  Y  K  R  I  C  N  L  L  V  I  E  E  H  H  G  R :   W  T  N  *  Q  R  R  Q  G  L  T  *  D  H  *  R  N  S  T  E  H  G  S  R  H  D  I  S  R  L   : *  W  *  N  Q  F  N  G  F  P  *  D  I  K  F  Y  G  D  S  Q  *  *  *  V  H  T  S  I  *  C  C  K  C  N  :  V  F  E  N  Y  *  *  Q  K  V  R  G  R  S  G  *  L  H  F  S  S  N  D  C  N  I  L  L  Q  E  W  L  G  * :   I  S  T  T  S  F  I  A  *  Q  Q  V  L  A  V  F  Q  G  S  S  *  Q  :  G  R  L  S  *  L  M  L  *  K  G  V  F  Y  L  W  L  T  *  S  N  C  S  T  L  G  S  K  G  *  E  M  P   : G  P  S  S  S  A  R  K  T  S  Y  C  L  *  *  A  R  P  C  I  C  Y  C  F  W  R  I  Y  K  D  V  *  C  T  L  F  R  Q   : G  T  F  *  N  F  L  C  W  W  R  C  V  *  C  *  Q  R  *  V  Q  *  R  W  E  T  C  A  F  D  N  *  G  W  A  Y  S   </second_frame>
            <third_frame>   S  P  P  V  K  Y  N  T  K  E  S  A  T  C  L  L  S  K  N  T  M  A   : G  G  P  T  D  R  E  D  K  V  S  L  E  T  T  E  E  I  L  Q  S  M  E  V  G  M  T  F  R  D  Y  :  S  G  R  I  S  S  M  D  F  H  K  T  S  N  F  M  V  T  A  S  D  D  E  S  I  R  L  Y  D  V  A  N  A  T :   C  L  K  T  I  N  S  K  K  Y  G  V  D  L  V  S  F  T  S  H  P  T  T  V  I  Y  S  S  K  N  G  W  D   : E  S  L  R  L  L  S  L  H  D  N  K  Y  L  R  Y  F  K  G  H  R  D  R :   V  V  S  L  S  L  C  Y  R  K  E  Y  F  I  S  G  S  L  D  R  T  V  L  L  W  D  Q  R  A  E  K  C  Q  :  G  L  L  R  V  Q  G  R  P  A  T  A  Y  D  E  Q  G  L  V  F  A  I  A  F  G  G  Y  I  R  M  F  D  A  R  Y  F  D  K  :  G  P  F  E  I  F  S  V  G  G  D  V  S  D  A  N  S  V  K  F  S  N  D  G  R  L  V  L  L  T  T  K  D  G  H  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60990" stop="60924"/>
                    <exon start="60835" stop="60744"/>
                    <exon start="59805" stop="59705"/>
                    <exon start="58708" stop="58608"/>
                    <exon start="58514" stop="58448"/>
                    <exon start="58364" stop="58265"/>
                    <exon start="58182" stop="58069"/>
                    <exon start="57963" stop="57853"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPPVKYNTKESATCLLSKNTMAGGPTDREDKVSLETTEEILQSMEVGMTFRDYSGRISSMDFHKTSNFMVTASDDESIRLYDVANATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHRDRVVSLSLCYRKEYFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDEQGLVFAIAFGGYIRMFDARYFDKGPFEIFSVGGDVSDANSVKFSNDGRLVLLTTKDGHIH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="69608" PGL_stop="68989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69608" e_stop="69419"/>
            <exon e_start="69264" e_stop="68989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.552" e_score="0.984"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="69608" e_stop="69419" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.552">
            <gDNA_intron_boundary i_start="69418" i_stop="69265" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="69264" e_stop="68989" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69608" stop="69419"/>
              <exon start="69264" stop="68989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAGTCTCTTTTTTATCACAACACTCTGAATTAGTGATAATTGGAAAATGGAAGGGGAAGAAGGCGTAGTAGTGCGGGGGCGGGTAGAGATTGATATGCGTCAGCCTTTTCAGTCTGTGAAGGAAGCAGTTATGTTGTTTGGGGAAAAGGTTTTAGCCGGAGAAATTCATGCTAAGCAACTTCAACAG : ATAAATCATGAGATTTGTACTGATGAACATAACAAGTGAAGGTAACTTAATGGTGCACAAATGACGGTGCCTATAACTTAGACTGATAAGTTATATGTGTATCTCTATATACTATGAAACTTATTATGATGTTCAACGTCAATGGCGGACCTATGTAGTGACTTATGGGTGCTTAAGCACCCAGTGCCTTTTGTGACAACATCATTATTTCTGTACATAATTTAATAATTCACTGAAATATATATCAATTGAGCACCCCATTATATGTAGAAATTT</gDNA_template>
            <first_frame> F  *  S  L  F  Y  H  N  T  L  N  *  *  *  L  E  N  G  R  G  R  R  R  S  S  A  G  A  G  R  D  *  Y  A  S  A  F  S  V  C  E  G  S  S  Y  V  V  W  G  K  G  F  S  R  R  N  S  C  *  A  T  S  T   : D  K  S  *  D  L  Y  *  *  T  *  Q  V  K  V  T  *  W  C  T  N  D  G  A  Y  N  L  D  *  *  V  I  C  V  S  L  Y  T  M  K  L  I  M  M  F  N  V  N  G  G  P  M  *  *  L  M  G  A  *  A  P  S  A  F  C  D  N  I  I  I  S  V  H  N  L  I  I  H  *  N  I  Y  Q  L  S  T  P  L  Y  V  E  I  </first_frame>
            <second_frame>  F  S  L  F  F  I  T  T  L  *  I  S  D  N  W  K  M  E  G  E  E  G  V  V  V  R  G  R  V  E  I  D  M  R  Q  P  F  Q  S  V  K  E  A  V  M  L  F  G  E  K  V  L  A  G  E  I  H  A  K  Q  L  Q  Q  :  I  N  H  E  I  C  T  D  E  H  N  K  *  R  *  L  N  G  A  Q  M  T  V  P  I  T  *  T  D  K  L  Y  V  Y  L  Y  I  L  *  N  L  L  *  C  S  T  S  M  A  D  L  C  S  D  L  W  V  L  K  H  P  V  P  F  V  T  T  S  L  F  L  Y  I  I  *  *  F  T  E  I  Y  I  N  *  A  P  H  Y  M  *  K  F </second_frame>
            <third_frame>   L  V  S  F  L  S  Q  H  S  E  L  V  I  I  G  K  W  K  G  K  K  A  *  *  C  G  G  G  *  R  L  I  C  V  S  L  F  S  L  *  R  K  Q  L  C  C  L  G  K  R  F  *  P  E  K  F  M  L  S  N  F  N  R :   *  I  M  R  F  V  L  M  N  I  T  S  E  G  N  L  M  V  H  K  *  R  C  L  *  L  R  L  I  S  Y  M  C  I  S  I  Y  Y  E  T  Y  Y  D  V  Q  R  Q  W  R  T  Y  V  V  T  Y  G  C  L  S  T  Q  C  L  L  *  Q  H  H  Y  F  C  T  *  F  N  N  S  L  K  Y  I  S  I  E  H  P  I  I  C  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69577" stop="69419"/>
                    <exon start="69264" stop="69226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISDNWKMEGEEGVVVRGRVEIDMRQPFQSVKEAVMLFGEKVLAGEIHAKQLQQINHEICTDEHNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="70400" PGL_stop="70546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70400" e_stop="70546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="70400" e_stop="70546" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70400" stop="70546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATTTATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTC</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  G  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  L  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  E  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  R  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  F  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0057H03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 87 chains have been computed
$ 
$ memory statistics:
$ 115384 bytes spliced alignments in total
$ 45 spliced alignments have been stored
$ 2564 bytes was the average size of a spliced alignment
$ 18608 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1691 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 98 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:41:39
-->
