<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:21:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572489" ref_strand="+" ref_description="SGN-U572489 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|55824321|gb|AAV66308.1| (e_value=2e-175) acyltransferase [Capsicum frutescens]; (*ATH) AT3G26040.1 (e_value=3e-63)  Symbol: None | transferase family protein, similar to deacetylvindoline 4-O-acetyltransferase (Catharanthus roseus)(GI:4091808)(PMID:9681034), alcohol acyltransferase (Fragaria x ananassa)(GI:10121328)(PMID:10810141) | chr3:9520978-9522307 FORWARD |... ; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=1e-62) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT; ">
      <seq>ggcaaattatctaagaagtaagtagtgttatctgttaaattaatcatggcttttgcattattatcatcgccattacttgtttcggtttgtgacaaaacctttattaaaccttcttctctcaccccaccaactcttagataccacaaactctcttacattgatcaattccaaagtaatatgtatattcctttggcacttttttaccctaaagtacaacaaagagaggagtcagataattctcaccaactttctcatatagctagcttgctacaaacatctctatcaaaaactttagtctcttattatccttacgctggaaaattgagagacaatgctattgttgattgtaatgatatgggagctgagtttttgagtgttcgaataaactgtaccatgtctgaaatacttgatcatcctgatgcatctcaagcagagagtatagtttttcccaaggacttgccttgggcgaataactatgaaggtggtaatttacttgtggcgcaagtaagtaagtttgattgtgggggaatagctatcagtgtgtgcttatcgcacaagattggtgatggaacctctgtgcttaatttcgttaatgattggtctcgtatgacatatagtcctatgacaaaaactttggcacctaaatttgtaggagactctgttttctcggcaaataattacaatcctattattgcaccacaaatattgtctagtgtcagtgaatgtgtacaaaaaagaatcatttttcataaaaccaagttggacgcacttcgagctaaggtagcagcagaatcgggagtagaaaatccaaccagggctgaagtagtgagcgcgatacttttcagatgtgcaattaaggcagcatcaagcacaactacttcaatgcgtccatcaaagtttgttcaccttttgaacgtacgtagtatgctgaaatctcgtctacctcaaagtaccattgggaatatcttgtccagtttctccacgacagcaactaaggaagaagacattgagttgccaacgttggttcgtaatttaaggaagggagttgaggaggcgtacaagaaagatcatgtggaacaaaatgaatatatcttagaagtagtagaatcaatgagaaaagggaaaaaaacatatgatgatgatgaatataaggatgtgtatttttgtagtaatctttgtaaatttccattgtataaagtggattttggatggggaaaacctgaaagagttagtttaccaaatggtccgttcaagaattttttcttcttgaaagattacaaaattggtggaggtgtggatgcgctggtaatgttggacaaacaacatatgtctgaatttgaacaacttatttcctaattgaattcattttagttgtgatgattttaagagttagtaattggctttgtttccctttctctaattaatatttacttattctagtcttctagtactattggccagttcaacaatatgagtggctctatgtagatgtctatatttattgaaaaagattaatatttgtgttgcatgcgcgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="-" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="11143" stop="9113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10844" g_stop="10068" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10067" i_stop="9972" i_length="96">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9971" g_stop="9319" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="1421" r_length="641" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9318" i_stop="9141" i_length="178">
            <donor d_prob="0.000" d_score="0.68"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9140" g_stop="9113" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1422" r_stop="1444" r_length="23" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1535" polyA_stop="1556"/>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="-" ref_id="SGN-U572489" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>1458</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10844" e_stop="10068"/>
          <exon e_start="9971" e_stop="9319"/>
          <exon e_start="9140" e_stop="9113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATTGTCTAAGGATTAAGTAGTGTTATCTGTTAATATAATCATGGCTTTTGCATCATTATCATCACCATCGCTTGTTTCAGTTTGTGACAAAACCTTTATTAAACCTTCTTCTCTCACCCCTCCTACTCTTAAATACCACAAACTATCTTACATTGATCAATTCTATAGCAATATGTATATTCCTTTGGCATTTTTTTACCCTAAAGTACAACAAAGAGAGGAGTC--A-ACTGATAATGAACTATCCCAAATAGCACACTTGCTACAAACATCTCTATCAAAAACTCTAGTCTTTTACTATCCTTATGCTGGAAAATTGAGAGACAATGCTACTATTGATTGTAACGATATGGGAGCTGAGTTTTTAAGTGTTCGAATAAATTGTACCATGTTTGAAATACTCAATCATCCTGATGCATCTCAAGCAGAGAGTATAGTTTTTCCCAAGGACTTGCCTTGGGCGAATAACTATGAAGGTGGTAATTTACTTGTTGCGCAAGTAAGTAAGTTTGATTGTGGGGGAATAGCTATCAGTGTGTGCTTAGCGCACAAGATTGGTGATGGAACCTCTGCGCTTAATTTCGTTAATGATTGGTCTCGTATGACTCTTAGTCCTATGACAACTACCTTGTCTCCTAAATTTGTAGGAGATTCTATTTTCTCGTCAAATAAGTATAGTCCTATTATTACGCCACAAATGTTGTCTGATGTCAGTGAATGTGTACAAAAAAGAATCATTTTTCCTACAACCAAGTTAGACGCACTTCGAGCTAAGGTAATCATACCACAAGTCCATATTATTTGCTTTTATGGTTTTTTCTTCTTCTTCATGTTTCCTGATCTATTTCAATTTATGCGACATAATTTGAAGGTAGCAGCAGAATCGGGAGTAGAAAATCCAACTAGGGCTGAAGTGGTGAGCGCGCTACTTTTCAAATGTGCAATTAAGGCAACATCAAGTACAACTACTTCAATGCGTCCATCAAAGTTTGTTCACCTTTTGAACGTACGTAGTATGCTGAAATCTCGTCTACCTCAAAGTACCATTGGGAATATCTTGTCCAGTTTCACCACAACAGCAACTAAGGAAGAAGACATTGAGTTGCCAACGTTGGTTCGTAGTTTAAGGAAGGGAGTTGAGGAGGCGCACAAGAAAGATCATGTGGAACAAAATGAAATGATGTTAGAAGTAGTGGAATCGATGAGAAAAGGGAAAAAACCATATGATGATGAT---TATGAGAATGTGTATTCTTGTTGTAATCTTTGTAAATTTCCATTGTATAAAGTGGATTTTGGATGGGGAAAACCTGAAAGAGTTAGTTTACCAAATGGTCCGTTCAAGAATTTTTTCTTCTTGAATGATTACAAAATTGGTGAAGGTGTGGATGCGCGGGTAATGTTGGACAAACAACATATGTCTGAATTTGAACGCGATGAGGAGCTTCTTGACCTTATTTCCTAGTTGATTACATGATTTTAGGATTTCATTTGTGTTGTGATGGCTTTGTTTTCCGTTCATCTACTAGTTCATCTTGGGGTGGTTCAATGAAATTAGTGGCTTTATGTAAATGTTTATATTGAATAATATTAGTATTTTATGTGTTACATGTGCATCTCGTATGTTAGTTAGTAACCATCTTGCTATTACAATGGATGCTTTTGTTGTAACAAGAATGAAGAATTCAACAATTTATTTATGTACTAATAACTTTATCTTTAGTATTAATCTT</genome_strand>
        <mrna_strand>GGCAAATTATCTAAGAAGTAAGTAGTGTTATCTGTTAAATTAATCATGGCTTTTGCATTATTATCATCGCCATTACTTGTTTCGGTTTGTGACAAAACCTTTATTAAACCTTCTTCTCTCACCCCACCAACTCTTAGATACCACAAACTCTCTTACATTGATCAATTCCAAAGTAATATGTATATTCCTTTGGCACTTTTTTACCCTAAAGTACAACAAAGAGAGGAGTCAGATAATTCTCACCAACTTTCTCATATAGCTAGCTTGCTACAAACATCTCTATCAAAAACTTTAGTCTCTTATTATCCTTACGCTGGAAAATTGAGAGACAATGCTATTGTTGATTGTAATGATATGGGAGCTGAGTTTTTGAGTGTTCGAATAAACTGTACCATGTCTGAAATACTTGATCATCCTGATGCATCTCAAGCAGAGAGTATAGTTTTTCCCAAGGACTTGCCTTGGGCGAATAACTATGAAGGTGGTAATTTACTTGTGGCGCAAGTAAGTAAGTTTGATTGTGGGGGAATAGCTATCAGTGTGTGCTTATCGCACAAGATTGGTGATGGAACCTCTGTGCTTAATTTCGTTAATGATTGGTCTCGTATGACATATAGTCCTATGACAAAAACTTTGGCACCTAAATTTGTAGGAGACTCTGTTTTCTCGGCAAATAATTACAATCCTATTATTGCACCACAAATATTGTCTAGTGTCAGTGAATGTGTACAAAAAAGAATCATTTTTCATAAAACCAAGTTGGACGCACTTCGAGCTAAG................................................................................................GTAGCAGCAGAATCGGGAGTAGAAAATCCAACCAGGGCTGAAGTAGTGAGCGCGATACTTTTCAGATGTGCAATTAAGGCAGCATCAAGCACAACTACTTCAATGCGTCCATCAAAGTTTGTTCACCTTTTGAACGTACGTAGTATGCTGAAATCTCGTCTACCTCAAAGTACCATTGGGAATATCTTGTCCAGTTTCTCCACGACAGCAACTAAGGAAGAAGACATTGAGTTGCCAACGTTGGTTCGTAATTTAAGGAAGGGAGTTGAGGAGGCGTACAAGAAAGATCATGTGGAACAAAATGAATATATCTTAGAAGTAGTAGAATCAATGAGAAAAGGGAAAAAAACATATGATGATGATGAATATAAGGATGTGTATTTTTGTAGTAATCTTTGTAAATTTCCATTGTATAAAGTGGATTTTGGATGGGGAAAACCTGAAAGAGTTAGTTTACCAAATGGTCCGTTCAAGAATTTTTTCTTCTTGAAAGATTACAAAATTGGTGGAGGTGTGGATGCGCTGGTAATGTTGGACAAACAACATATGTCTGAATTTGAAC-AACTTATTTCCTAATTGAATTCATTT--TAGTTG--T-GATGATTTTAAGAGTT-A-----GTAAT--TGGCTTTGTTTCCCTTTC-TCTAAT..................................................................................................................................................................................TAAT-A-TTTA-C-TTA-TTCTAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568482" ref_strand="+" ref_description="SGN-U568482 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|197360039|gb|ACH69874.1| (e_value=3e-41) anthocyanin; (*ATH) AT3G26040.1 (e_value=6e-25)  Symbol: None | transferase family protein, similar to deacetylvindoline 4-O-acetyltransferase (Catharanthus roseus)(GI:4091808)(PMID:9681034), alcohol acyltransferase (Fragaria x ananassa)(GI:10121328)(PMID:10810141) | chr3:9520978-9522307 FORWARD |... ; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=7e-24) Vinorine synthase OS=Rauvolfia serpentina GN=ACT; ">
      <seq>ggnntnacggccgggggtagcaaaatggaaattgaaatcttatacaaaaagctcataaagccatttttacctactccttctcaccttcaacattacaagctctcattcttcgaccaaatagctttgaaagaacatgtccccattgttcttttctatgctaataataaattcatcaacaacttcacaatcgatgaacgaattaagcaatctctttcgaaggtattaactcatgtttatccagcagcaggaaggtacgataaagatgaatgttcgattctttgtcttgatcaaggtatttcttatactaaggccaaggtaaattgtaagttgaataatttcttagagaaagcacacagggaccttagtcttgcagctttattttggccacacgaaaataagtatataaataaaagtaatttaatggtttcaccaattgtaacggcacaagtaactgagtttgaatgtggtggtctcgcggtctcattgagcagttcacaccctgcgatggatggtttctcaaatattaaatttcttttagagtgggcaaaagtgtgtaaaatggaaactcctgttgagaatattaattttctaagattcaatttaggtaatgtttttccaacaagagatatatcaagacttttcaagtcaacttatgatccagtaatagagaaagatattgttacgaagagatttattatttgtgagactattatgtcaaggctaagaaaaaaatgcattgatgaagcgcgtggagctttgactttttcaaccgacaagagttgaaatttantac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="-" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="24988" stop="23611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24682" g_stop="23911" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="793" r_length="773" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="-" ref_id="SGN-U568482" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24682" e_stop="23911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGAAATTGAAATCTTATACAAAAAGCTCATAAAGCCATTTTTACCTACTCCTTCTCACCTTCAACATTACAAGCTCTCATTCTTCGACCAAATAGCTTTGAAAGAACATGTCCCCATTGTTCTTTTCTATGCTAATAATAAATTCATCAACAACTTCACAATCGATGAACGAATTAAGCAATCTCTTTCGAAGGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTACGATAAAGATGAATGTTCGATTCTTTGTCTTGATCAAGGTATTTCTTATACTAAGGCCAAGGTAAATTGTAAGTTGAATAATTTCTTAGAGAAAGCACACAGGGACCTTAGTCTTGCAGCTTTATTTTGGCCACACGAAAATAAGTATATAAATAAAAGTAATTTAATGGTTTCACCAATTGTAACGGCACAAGTAACTGAGTTTGAATGTGGTGGTCTCGCGGTCTCATTGAGCAGTTCACACCCTGCGATGGATGGTTTCTCAAATATTAAATTTCTTTTAGAGTGGGCAAAAGTGTGTAAAATGGAAACTCCTGTTGAGAATATTAATTTTCTAAGATTCAATTTAGGTAATGTTTTTCCAACAAGAGATATATCAAGACTTTTCAAGTCAACTTATGATCCAGTAATAGAGAAAGATATTGTTACGAAGAGATTTATTATTTGTGAGACTATTATGTCAAGGCTAAGAAAAAAATGCATTGATGAAGCGCGTGGAGCTTTGAC-TTTTCAACCGACAAGAGTTGAAA-TTATTAC</genome_strand>
        <mrna_strand>C-AAAATGGAAATTGAAATCTTATACAAAAAGCTCATAAAGCCATTTTTACCTACTCCTTCTCACCTTCAACATTACAAGCTCTCATTCTTCGACCAAATAGCTTTGAAAGAACATGTCCCCATTGTTCTTTTCTATGCTAATAATAAATTCATCAACAACTTCACAATCGATGAACGAATTAAGCAATCTCTTTCGAAGGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTACGATAAAGATGAATGTTCGATTCTTTGTCTTGATCAAGGTATTTCTTATACTAAGGCCAAGGTAAATTGTAAGTTGAATAATTTCTTAGAGAAAGCACACAGGGACCTTAGTCTTGCAGCTTTATTTTGGCCACACGAAAATAAGTATATAAATAAAAGTAATTTAATGGTTTCACCAATTGTAACGGCACAAGTAACTGAGTTTGAATGTGGTGGTCTCGCGGTCTCATTGAGCAGTTCACACCCTGCGATGGATGGTTTCTCAAATATTAAATTTCTTTTAGAGTGGGCAAAAGTGTGTAAAATGGAAACTCCTGTTGAGAATATTAATTTTCTAAGATTCAATTTAGGTAATGTTTTTCCAACAAGAGATATATCAAGACTTTTCAAGTCAACTTATGATCCAGTAATAGAGAAAGATATTGTTACGAAGAGATTTATTATTTGTGAGACTATTATGTCAAGGCTAAGAAAAAAATGCATTGATGAAGCGCGTGGAGCTTTGACTTTTTCAACCGACAAGAGTTGAAATTTANTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587729" ref_strand="+" ref_description="SGN-U587729 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|197360039|gb|ACH69874.1| (e_value=6e-15) anthocyanin; ">
      <seq>ggttcttttctatgctaataataatctcatcaacaacttcaccatcgatgaacgaattgaacaatctctttcgaaggtattaactcatgtttatccagcagcgggaaggtacgacaaagatgaacgttcgattctttgtcttgatcaaggtatttcttatactaaggctaaggtagattgtaagttgaatcatttcttggagaaagcaaaaaatgaccttagtcttgcagctttattttggccgaatgaaaacaaatacataaataaatgtaatttaatggtttcaccaattgtaacggcacaagtaactgagttccaatgtggcggtctcattgagcagctcacaccctgcgatggatggtttctcaaatattaaatttctttttgagtgggcaaaagtgtgtaaaatgacaactcctgttgagaatattgattctctaagattcaatctaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="-" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="24857" stop="23793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24558" g_stop="24094" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="-" ref_id="SGN-U587729" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24558" e_stop="24094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTTTCTATGCTAATAATAAATTCATCAACAACTTCACAATCGATGAACGAATTAAGCAATCTCTTTCGAAGGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTACGATAAAGATGAATGTTCGATTCTTTGTCTTGATCAAGGTATTTCTTATACTAAGGCCAAGGTAAATTGTAAGTTGAATAATTTCTTAGAGAAAGCACACAGGGACCTTAGTCTTGCAGCTTTATTTTGGCCACACGAAAATAAGTATATAAATAAAAGTAATTTAATGGTTTCACCAATTGTAACGGCACAAGTAACTGAGTTTGAATGTGGTGGTCTCGCGGTCTCATTGAGCAGTTCACACCCTGCGATGGATGGTTTCTCAAATATTAAATTTCTTTTAGAGTGGGCAAAAGTGTGTAAAATGGAAACTCCTGTTGAGAATATTAATTTTCTAAGATTCAATTTAGGTAA</genome_strand>
        <mrna_strand>GGTTCTTTTCTATGCTAATAATAATCTCATCAACAACTTCACCATCGATGAACGAATTGAACAATCTCTTTCGAAGGTATTAACTCATGTTTATCCAGCAGCGGGAAGGTACGACAAAGATGAACGTTCGATTCTTTGTCTTGATCAAGGTATTTCTTATACTAAGGCTAAGGTAGATTGTAAGTTGAATCATTTCTTGGAGAAAGCAAAAAATGACCTTAGTCTTGCAGCTTTATTTTGGCCGAATGAAAACAAATACATAAATAAATGTAATTTAATGGTTTCACCAATTGTAACGGCACAAGTAACTGAGTTCCAA--T-GT-G----GCGGTCTCATTGAGCAGCTCACACCCTGCGATGGATGGTTTCTCAAATATTAAATTTCTTTTTGAGTGGGCAAAAGTGTGTAAAATGACAACTCCTGTTGAGAATATTGATTCTCTAAGATTCAATCTAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599051" ref_strand="+" ref_description="SGN-U599051 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345939|emb|CAO15636.1| (e_value=2e-85) unnamed; (*ATH) AT3G57150.1 (e_value=1e-83)  Symbol: None | dyskerin, putative / nucleolar protein NAP57, putative, similar to SP:P40615 Dyskerin (Nucleolar protein NAP57) {Rattus norvegicus}; contains Pfam profiles PF01509: TruB family pseudouridylate synthase (N terminal domain), PF01472: PU... ; (*SWP) sp|Q9LD90|DKC1_ARATH (e_value=1e-82) H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana GN=NAP57; ">
      <seq>accctacctgaaacttaacccaccgaaagccgccatgactgacgttgagctctctcgctcagagaagaagaaaaagaaatcaaagtctggcaaaaatgatgacgaaacacaaacactatccaccccaattgatggtgattttctcatcaaacctcaaagctacacacccaccattgacacttcagaatggccgattctattgaaaaactacgatcgtctcaatgtcagaacgggtcactacactcctctcccatctgggttttctccattgaagcgtccgcttgctgagtatataaggtatggtattcttaatcttgataaacctgctaacccatcttcacatgaagttgtagcttggattaagaggattcttcgggtcgagaaaacgggtcatagtggtactttggatcctaaagttactgggaatttgattgtttgtattgatagagcgacccgtttggttaaatcccaacagggtgcgggtaaagagtatgtgtgtgttgctaggttgcattctgatgtacctgatgttgctaaggttgctagggcacttgaagctcttactggggctgtttttcaaagaccccctttgatttctgctgtgaaaaggcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="+" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="48704" stop="49919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49004" g_stop="49619" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="+" ref_id="SGN-U599051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49004" e_stop="49619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTACCTGAAACTTAACCCACCGAAAGCCGCCATGACTGACGTTGAGCTCTCTCGCTCAGAGAAGAAGAAAAAGAAATCAAAGTCTGGCAAAAATGATGACGAAACACAAACACTATCCACCCCAATTGATGGTGATTTTCTCATCAAACCTCAAAGCTACACACCCACCATTGACACTTCAGAATGGCCGATTCTATTGAAAAACTACGATCGTCTCAATGTCAGAACGGGTCACTACACTCCTCTCCCATCTGGGTTTTCTCCATTGAAGCGTCCGCTTGCTGAGTATATAAGGTATGGTATTCTTAATCTTGATAAACCTGCTAACCCATCTTCACATGAAGTTGTAGCTTGGATTAAGAGGATTCTTCGGGTCGAGAAAACGGGTCATAGTGGTACTTTGGATCCTAAAGTTACTGGGAATTTGATTGTTTGTATTGATAGAGCGACCCGTTTGGTTAAATCCCAACAGGGTGCGGGTAAAGAGTATGTGTGTGTTGCTAGGTTGCATTCTGATGTACCTGATGTTGCTAAGGTTGCTAGGGCACTTGAAGCTCTTACTGGGGCTGTTTTTCAAAGACCCCCTTTGATTTCTGCTGTGAAAAGGCAGCTT</genome_strand>
        <mrna_strand>ACCCTACCTGAAACTTAACCCACCGAAAGCCGCCATGACTGACGTTGAGCTCTCTCGCTCAGAGAAGAAGAAAAAGAAATCAAAGTCTGGCAAAAATGATGACGAAACACAAACACTATCCACCCCAATTGATGGTGATTTTCTCATCAAACCTCAAAGCTACACACCCACCATTGACACTTCAGAATGGCCGATTCTATTGAAAAACTACGATCGTCTCAATGTCAGAACGGGTCACTACACTCCTCTCCCATCTGGGTTTTCTCCATTGAAGCGTCCGCTTGCTGAGTATATAAGGTATGGTATTCTTAATCTTGATAAACCTGCTAACCCATCTTCACATGAAGTTGTAGCTTGGATTAAGAGGATTCTTCGGGTCGAGAAAACGGGTCATAGTGGTACTTTGGATCCTAAAGTTACTGGGAATTTGATTGTTTGTATTGATAGAGCGACCCGTTTGGTTAAATCCCAACAGGGTGCGGGTAAAGAGTATGTGTGTGTTGCTAGGTTGCATTCTGATGTACCTGATGTTGCTAAGGTTGCTAGGGCACTTGAAGCTCTTACTGGGGCTGTTTTTCAAAGACCCCCTTTGATTTCTGCTGTGAAAAGGCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580884" ref_strand="+" ref_description="SGN-U580884 Tomato 200607#2 [9 ESTs aligned] ">
      <seq>aagaaaaatagttcaacacttgagcagcccttctaagatagaaggtgctaaacagtggccaaaatctttctactgccttgcaaacttcctgccctagaactaactatacacaccatacagcttcaaacaaaggcagttgttatgcagctgattagttgtatttcagctacagacatctacaggcaatgaagtacaaaaacagaaaacatctcaaaatttagatagaaaacagccttatggattgaaatactcaagtcttgacaaataaaaaaggtaaaactaattaactaataagcacgtctatgaccaggaacttcagctgcaacaaactcctgcccaaaaacaagtgaataaacggcaaaattttgaactacatgacgtgcattttaacatacataggagcacactcaattggggtaaaaaccttcacctctactcctcttgagcatcatctttattcttctttttcttcttatccttcttcttgcttttacttccttcatcgtcacttccaacatcaccattctctgattctttatctttcttctttttctttttcttcttctcggacttctcctcatctgaggatgcaacatcgttattctctttgtccttctttttcttttcctttttcacagactccacatcaggggatgcagcttcatcagcttctttcttctttttcttcttcttttcttttttcagttcagacttatccaatgcttcctcgactacctctacctttggtttctttaaagcactgggtgcaggggatacatctaaatcatccaattctcctgttagcgtcctcatcatcttccttgtgtttcttctttttcttctcaacctcaactgcagcaccatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="-" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="51533" stop="50064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51233" g_stop="50364" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="868" r_length="868" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="-" ref_id="SGN-U580884" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51233" e_stop="50364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAACGGCAAAATTTTGAACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACATCTAAATCATCCAATTTTCTCTTGTTAGCGTCCTCATCATCTTCCTTGTGTTTCTTCTTTTTCTTCTCAACCTCAACTGCAGCACCATCAGC</genome_strand>
        <mrna_strand>AAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAACGGCAAAATTTTGAACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACATCTAAATCATCCAA--TTCTCCTGTTAGCGTCCTCATCATCTTCCTTGTGTTTCTTCTTTTTCTTCTCAACCTCAACTGCAGCACCATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569299" ref_strand="+" ref_description="SGN-U569299 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|115469408|ref|NP_001058303.1| (e_value=3e-78) Os06g0665100; (*ATH) AT5G44730.1 (e_value=1e-77)  Symbol: None | haloacid dehalogenase-like hydrolase family protein, low similarity to SP:Q94915 Rhythmically expressed gene 2 protein (DREG-2) {Drosophila melanogaster}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase | c... ; (*SWP) sp|Q7T012|HDHD3_DANRE (e_value=3e-11) Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Danio rerio GN=hdhd3; ">
      <seq>gacatttaattgtatctgagctaaaataggcttcaaaatgaattgaatatacacataaactgcttcaagaatctagctttatttgaaaagatagcaattttattgaagcccattctctttttcatccatttcagcttctgggactgtaacacacagggtagagttttctgtacagtcatttacaatgtcaattttaacgaagttacgctgcatcacacttgatgttaccggtacactgattgcttacaaaggagagttgggtgactattattgcatggctgccaaagctgctgggcagcaatgtcctgactataagcgggttcatgaaggttttaaactagcatatacagaaatggcaaagaagcattcatgttttggatttgctgaaaagattcctaacattgtttggtggaagacttgtgtcaggaattcctttgttcaggcaggttatgaatatgatgatgagacatttgagaagatatttagacgcatatatgcaacttttggttcttctgcaccttacaacatatttcctgatgctataccgttcctcagatggctccgcgagaggggcgttacagttgggttggtcagcaatgctgagtatcgatatcaggatgtgattcttcctgcattaggcttgaatcagggatctgagtgggatttcggcgtattttccggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="-" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="60246" stop="56229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59947" g_stop="59807" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59806" i_stop="57401" i_length="2406">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57400" g_stop="57100" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="442" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57099" i_stop="56910" i_length="190">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56909" g_stop="56703" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="649" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56702" i_stop="56565" i_length="138">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56564" g_stop="56529" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="685" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="-" ref_id="SGN-U569299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59947" e_stop="59807"/>
          <exon e_start="57400" e_stop="57100"/>
          <exon e_start="56909" e_stop="56703"/>
          <exon e_start="56564" e_stop="56529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTAATTGTATCTGAGCTAAAATAGGCTTCAAAATGAATTGAATATACACATAAACTGCTTCAAGAATCTAGCTTTATTTGAAAAGATAGCAATTTTATTGAAGCCCATTCTCTTTTTCATCCATTTCAGCTTCTGGGTAGGCTTCAAATCCATCTTCTATCCTATTTCTTGTGTAAAAATTTGATCTTTTTGTGTTAAAGATGAGCTTTTGGATTCACAAAAATGAAGTCATATTTGGATTCAGAAACCTGAATTTCTTTGTGATTTTTGTGCATGTATGTGTTCATGAACCTGGCCATGAAATGTTAAGCTTTTTCGCAAGTTAATTTGGTGAGGTAGATTGATTGATTGATTTTCATTTGCTGCTGATGGTTTTCTTGTTCTAAAGATTGTCTTTTTCTAATGCCCTAGCAGTTCGTTTACTTTTTTTTTTTTTTTGTATTAACACATTTTGGATAAACTCCACCTGCAGAAAAGGAAGATGCAATATTAAGATGATCTTATTATTTATTTATTCATTTTTGTCTAAATTGACTTGTGATAATTCTGAACTTTGAATTGTGTGGATTAGGATTTAGTCTGTTGCGTGTGATTTATTAAAGTCATTATTCAAATAGTTGACGAGTTTGTTTTGACAAGAAAGATTTAGTTGTCTCTTGTGCTGAGCTGATGGTGACATTCCCAGGGACTTCATTTATGTGATCGTTGGTGGTTGAGATTGAAGAATTGGTGAATGGGGTTAATGCAGTTCAGTAGTTATCTAAATTTCATGTGTAAATTGATCTATGGTATATGGAGATGTTTGGTCAGGTTCCTGAGGTTCAGGATTATAAGCCTGAAGCTTTGCAGGTTTATGACTAAGTGCAAACGTTTTGGATATATCTGTCTTTGAATAGGTTTTGATGATGAGTGGATGTTTAGTGGCTCATCAATAGAGATGTTTGGTGTTTTATATCTTCTAAAATCACTTTCGTAGCTGATATGTTTGTTATTTTAAACAAATATCTATGAAATAATTGTCCACATGATCAGTTGTGTAAGGCATCAGATTTTGCCCCTTGGTGTTTAGGAAAAACCAAGAAGTGGCAGAACATGGGTTAATCCATTATGGTACTTAATCCTTCCGTGATTTTGCAACTTCTATTAGATTGACTGTTGGATTTTCAGGTCAGAATATTATCTATTCATATTTCCTGAGGAATGCATAATTTTAGACGAGAACTAGGGTTATAGAGTAGTTTTCAGGTTCACTAATTCTGTGCATAAGGTTAAAATTTGGATCATGGATCGACCTACAGCTGGTCTATTGGTTCCTTCTGCTCATACCATGTCTGTGTGTACTCATGAACTTGAATCAAGGTTACAAACATCCTAGATTGTTTCGTTTTTCCTTCCCTTTTAGAAGATATTCTTGTGTGTGTATATATGAGAATTTTCAGTCCTATGTTACCTGGATTTAGGTTGGATATATTTGGTTCATGTGTCACTAAGTATCCATTTAGCCATTCCAATTAGCAAATTTTAAGTGTATCTTGAAGGATCTAAATGGACTGACACCAATTTTTCAATCTAGGTATGTCAAGGCAATTGAAAGTTTGCGTAACATAGATTTATTTGAAGTATGAAGTTTAGCATGGAGAAAATGTCTATTTTATGGTAGATTTCTCGGCCATCTTCTTTGATGTCTTAAAATATTGCCATTGGCCCCTTGGTTCTCTTAGAGGTGATTGTTATGATAAGGTTACAGGAAATGTCCATCATACATTCAGAATTAAGATGATAGCTTAGCCACCAAACAAAAAGGGCAGGATGGATGGATGTGGCTTCCAGTGTCATTCTAATTTCTAAACACCTATAAGAAATCTTCCTTCAAACATTTGTTAGGGTTACTTTGCTGGAGCTTTAGGCCCCAGTTCCTACAAGGTTTTTTCATATCAATTTGTGTGGACTAGAACCCACCTCCTTTGATTTACGCAAAGGTATTGTATCATTTCATTGGAAGTTGTGAAGTTTGTGTAGTACTTAATATAAGCAACTGATATCAGTTATCTTGTTCTCGGATCAAGTTACACGGCTCTTTTCTTTTGTGTGTTGAGGAGTTTCTGTTTCATAATTAGTACTGGACATGGTCTTATACTTTGATATTAGAGGAGCGATCTCAATTTCACGGTGAATTTTTCTCTCATAAGAGCTCTTCACTCTTGCTAGATGCCACAATTTGGAACTAGTATATGGTTAGAGAATATTAGAATTACATCCCTTCCAATTACAATTCTGAGCAAGTTAAACATAAGAACATCTTAATAGCAGAAGGGTCTACTTGCATGAAATTCATTCTGGAGAGAACTGGTGTCTATTGATTTTTATTTGGGATAATGAATCCCATTCTGTGGATTCCTTTGTCAACTTGTGTCCTAATAAGATTGCTTCCGAAAATGTACATGTTATATTATGGAATTAAACATTTATTTGGGAATACCATAGTTTATAAGTGTCAGAATTAAGGATGTGTATGACATGATTGGTGAAAATTGCAATGCAGGACTGTAACACACAGGGTAGAGTTTTCTGTACAGTCATTTACAATGTCAATTTTAACGAAGTTACGCTGCATCACACTTGATGTTACCGGTACACTGATTGCTTACAAAGGAGAGTTGGGTGACTATTATTGCATGGCTGCCAAAGCTGCTGGGCAGCAATGTCCTGACTATAAGCGGGTTCATGAAGGTTTTAAACTAGCATATACAGAAATGGCAAAGAAGCATTCATGTTTTGGATTTGCTGAAAAGATTCCTAACATTGTTTGGTGGAAGACTTGTGTCAGGAATTCCTTTGTTCAGGTATTGTGCATGGCATTATCTTGGGATATTTGGTTGTTAGTATTTTTATATATAATCTCAGAAGTCATTTGTTCAATTTATTACAGAACAGCGGCAAAACGTTTTAGTATGACTGTTGAATTATGATTTGAGATCTGAACTGCAATTATTTTATGTTTCTACTGATATCAAGTATCCTTTCTTTTGACAGGCAGGTTATGAATATGATGATGAGACATTTGAGAAGATATTTAGACGCATATATGCAACTTTTGGTTCTTCTGCACCTTACAACATATTTCCTGATGCTATACCGTTCCTCAGATGGCTCCGCGAGAGGGGCGTTACAGTTGGGTTGGTCAGCAATGCTGAGTATCGATATCAGGATGTGATTCTTCCTGCATTAGGCTTGAATCAGGTAGATACACAATGGTTGTCATTTCATTTTTTTGTGTTGTATCTTCTTATTACATCTTTTGGCTGATTTAATCTTTTTCCAAACACACTGAAAAACCATGAAGTAGTTGAACACCTTTTTGTGTGTGACCAAAATCAGGGATCTGAGTGGGATTTCGGCGTATTTTCCGGTCTT</genome_strand>
        <mrna_strand>GACATTTAATTGTATCTGAGCTAAAATAGGCTTCAAAATGAATTGAATATACACATAAACTGCTTCAAGAATCTAGCTTTATTTGAAAAGATAGCAATTTTATTGAAGCCCATTCTCTTTTTCATCCATTTCAGCTTCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTAACACACAGGGTAGAGTTTTCTGTACAGTCATTTACAATGTCAATTTTAACGAAGTTACGCTGCATCACACTTGATGTTACCGGTACACTGATTGCTTACAAAGGAGAGTTGGGTGACTATTATTGCATGGCTGCCAAAGCTGCTGGGCAGCAATGTCCTGACTATAAGCGGGTTCATGAAGGTTTTAAACTAGCATATACAGAAATGGCAAAGAAGCATTCATGTTTTGGATTTGCTGAAAAGATTCCTAACATTGTTTGGTGGAAGACTTGTGTCAGGAATTCCTTTGTTCAG..............................................................................................................................................................................................GCAGGTTATGAATATGATGATGAGACATTTGAGAAGATATTTAGACGCATATATGCAACTTTTGGTTCTTCTGCACCTTACAACATATTTCCTGATGCTATACCGTTCCTCAGATGGCTCCGCGAGAGGGGCGTTACAGTTGGGTTGGTCAGCAATGCTGAGTATCGATATCAGGATGTGATTCTTCCTGCATTAGGCTTGAATCAG..........................................................................................................................................GGATCTGAGTGGGATTTCGGCGTATTTTCCGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585027" ref_strand="+" ref_description="SGN-U585027 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157338577|emb|CAO41928.1| (e_value=4e-39) unnamed; (*ATH) AT3G47630.2 (e_value=2e-37) | Symbol: None | similar to Hypothetical protein CBG04116 [Caenorhabditis briggsae] (GB:CAE60498.1) | chr3:17574031-17576414 REVERSE | Aliases: None; ">
      <seq>ggatctgttgcttcttcttcttcaatggcagtctcaatcatcccaaccttaaacccttgaaaaccccaggaacttaattgaaaagatttgccaaattgatagctaaattttgttaattagggttcaaattgcacatgtgtactgatcagtaagtggtaaccaatgcattatcttaataatttcaagcgtgtcttccagatgtttgataaaattcctgtgagaatacttcaagattttgatccaattgaacatatgtttgtatgtaccatattacatgatttttgttttgttttcatatgttaatgtagaaatggtgggacaggataaagctgagctagggggtttgcttgaaattctacccccggtagagttttgctgtatatatggttctaaacttcatcccaacaacaaagatgagacatctatgacagattacattattggagtatctgatcctcgacaatggcattctgagaatctaaaattgaacaaggatcactatgcttcgtgtctcattcgccttggtggagcaaggatgataactgatattgcaaatgacattggtgttggcgtacacttcaacccatttgtgtcttgcaacaacaaggtaaatgaagatgcactttcttttaacacatcagtaatttaanantaacttttacagatgttcnagtatggagttgtacggatgcatgacttgattcna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="+" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="64709" stop="66312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65009" g_stop="65426" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65427" i_stop="65535" i_length="109">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65536" g_stop="65592" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="475" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65593" i_stop="65663" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.516" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65664" g_stop="65726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="538" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65727" i_stop="65844" i_length="118">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65845" g_stop="66012" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="706" r_length="168" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="+" ref_id="SGN-U585027" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65009" e_stop="65426"/>
          <exon e_start="65536" e_stop="65592"/>
          <exon e_start="65664" e_stop="65726"/>
          <exon e_start="65845" e_stop="66012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTGTTGCTTCTTCTTCTTCAATGGCAGTCTCAATCATCCCAACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAGGTAATTGCTGAATTTTAAGCAACTCTCTGTCCATCTTTGTTTTCAAAATCTAACGTCTTTCTACAATCCAGAATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATGGTGCTATTTCCTTTCTTGAATTAACTTTGATTTCCCTCATTTCTTTACTACTTTATATATGTTTTTAGTCTTACATTTCAACTCTAACTAAAGAACAATTTACTGTGCATTGTGTCAGATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAAGATTAACTTTTACAGATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAA</genome_strand>
        <mrna_strand>GGATCTGTTGCTTCTTCTTCTTCAATGGCAGTCTCAATCATCCCAACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAG.............................................................................................................ACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG.......................................................................AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG......................................................................................................................ATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAANANTAACTTTTACAGATGTTCNAGTATGGAGTTGTACGGATGCATGACTTGATTCNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585029" ref_strand="+" ref_description="SGN-U585029 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157338577|emb|CAO41928.1| (e_value=2e-69) unnamed; (*ATH) AT3G47630.2 (e_value=2e-69) | Symbol: None | similar to Hypothetical protein CBG04116 [Caenorhabditis briggsae] (GB:CAE60498.1) | chr3:17574031-17576414 REVERSE | Aliases: None; (*SWP) sp|Q96BW9|MMP37_HUMAN (e_value=3e-31) MMP37-like protein, mitochondrial OS=Homo sapiens GN=C3orf31; ">
      <seq>aaccttaaacccttgaaaaccccaggaacttaattgaaaagatttgccaaattgatagctaaattttgttaattagggttcaaattgcacatgtgtactgatcagtaagtggtaaccaatgcattatcttaataatttcaagcgtgtcttccagatgtttgataaaattcctgtgagaatacttcaagattttgatccaattgaacatatgtttgtatgtaccatattacatgatttttgttttgttttcatatgttaatgtagaaatggtgggacaggataaagctgagctagggggtttgcttgaaattctacccccggtagagttttgctgtatatatggttctaaacttcatcccaacaacaaagatgaggttttttctacttccttctttcggataatgaattccactcatggttttatttgatcaagaagttctataaaatactgcaatagtacattgctaacaaattcattgctagacatctatgacagattacattattggagtatctgatcctcgacaatggcattctgagaatctaaaattgaacaaggatcactatgcttcgtgtctcattcgccttggtggagcaaggatgataactgatattgcaaatgacattggtgttggcgcacacttcaacccatttgtgtcttgcaacaacaagatgttcaagtatggagttgtacggatgcatgacttgattcaagacatattgggatgggagaggttttatctcagcggtcgtttgcagaaaccagtgaacattcttacggataacttggatataaaaagcgtgaacagcgtgaatctgaaagctgcaacttctgctgctcttctccttttgccatctaaattcacggaggaagatttatatgccaaaatctgtagcctctcatatacaggtgacttgcgtatgctttttgcagaggacaaaaataaggtagatttgacatttgagtgggtttaaattttaaaattttgtggccctgactgtaccacatggaagtatcaatctacaagtaagtttatagtgtaattgggtagtttctcaattttatagttttatattacttccagcggatcaatgaatatcagttaatttgcatctcatatctacaaaatatcctttttggactagaatttgaatctcaacttttagcatagtatctcatagtgcattggcaactttcatgccacattaattgattgaattgattcttccattccgtgtacatgaatttcttcattgcatattgatccaggtgaacaaaattgtacaaggacagttccatttatttgaggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="+" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="64753" stop="69170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65053" g_stop="65592" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65593" i_stop="65663" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.516" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65664" g_stop="65726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="603" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65727" i_stop="65844" i_length="118">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65845" g_stop="65913" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="672" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65914" i_stop="65970" i_length="57">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65971" g_stop="66063" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="765" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66064" i_stop="67475" i_length="1412">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67476" g_stop="67580" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="870" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67581" i_stop="67667" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67668" g_stop="68196" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="1399" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68197" i_stop="68845" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68846" g_stop="68870" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1400" r_stop="1424" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="+" ref_id="SGN-U585029" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65053" e_stop="65592"/>
          <exon e_start="65664" e_stop="65726"/>
          <exon e_start="65845" e_stop="65913"/>
          <exon e_start="65971" e_stop="66063"/>
          <exon e_start="67476" e_stop="67580"/>
          <exon e_start="67668" e_stop="68196"/>
          <exon e_start="68846" e_stop="68870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAGGTAATTGCTGAATTTTAAGCAACTCTCTGTCCATCTTTGTTTTCAAAATCTAACGTCTTTCTACAATCCAGAATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATGGTGCTATTTCCTTTCTTGAATTAACTTTGATTTCCCTCATTTCTTTACTACTTTATATATGTTTTTAGTCTTACATTTCAACTCTAACTAAAGAACAATTTACTGTGCATTGTGTCAGATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAAGATTAACTTTTACAGATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCAGTATGGCTTGTTTTGAACTGCTATTTAAATAACATATTTTACAAAGGACTTCGGTTACAGTATTAGTTACATTGATGTAAGGACTTCCGAATGAATTTAAGTCAGTTAGTATATTTTGCAATCCTTTTGTGCCTCTTAGTCATTATTGTGGTACTTCTATGTCACATGAATTTAATTTCTGTTGTGATGAATTTAATAATATTGATGGTATCAGGAATAGTTCTTTATTGATGACTGACTTTCCTGAGTTGCTATAAATACCTATCAGTCAAAGAAGCATGAAATCATCATTTAAGAAGTAACTTGCTACATGATGTTAGCTTACTCTCATTTGTATAACAAAAGGGAGAAAACTTGGTAATGTTTTTATTCGCATTAAATGTGGTCAAATAAGCTTACATTGGTTAGGATAATATCCACGAGCTCTTGTATGTTCTCTTAGCCGTAGGATCTCACTTTGGTGGTACCTAGAGACATAAGAATAAAGAGTTATCATAATAACGCTGTATTATGATCCTATTATAATAACGTTGTATTATAATCCTATCATAATAACGTTGTATTATAATCCTATCTAATTTTCCTCTTCCCCAAAAGAAATCCTATCTAATATTTCCTCCCAAAAAAAATATAATCGATTCTGGCTTGAAACTATATGTATATCTCAGCCTGCATTTTCTTACAAAACAAATTAGCATGTGCTTTTGATATTTGATGGCACACCACTGCTAGCTTTTAAGCTCTCTCTTCTATTAACCTGAAAATGAACATGAAAAGTCAAGTGAGTGTGTATGGTAACTTGTTGTACTCTCAAAGATATTCCTAACAGAAGCAGTGCACTCAAACATTTCTTGCGAGTGTTAAAAAGAACTTCAGTTGGAAATATTCGAATGAGATGCTTTGTTTTCTTCTGTCTATGTCTGCGCAAAGGTTTTAAACTTTGATAAACTTGACATTTGACCACCAAAGCTCTATGTTGCATCAGATTTTACAGCTCATTGCAAAATGGAACCTGCATCCCTAACTCCCGTCTGATTTCTAGTTTCCTTCTTAGTCGTATTAGTTGGAGGCTTAATAGCTATTGCTTGATTTTTATTAGACATTTCTATGCTTTCTAATTGGGAAGTCATGGGCTCATGGCTGAAATTCTGCGCTTCCTGAATAGAGAGTTTAAGTCTACTGTGGACTGAAAATATAGAAATGCTCCTGATAAAATATATAAAAATACATAGAGAGGCCGTCTGTTTCTCTAAATTATATTACATGATGCATTCAACAGATATCGCTCAACTGATTTTTAGTTTCATACTCAGATATAATATTCTGAATTTCTTTATTGGCTCCTTTTTTGCTTGTTGTGGTGAGTCTGGTGACTGTCCGTCATCCATAACTTACATTTACTTCTAAATCAGGTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAGGTTAGTCTCTTTAATCATTTCTGATTTCTTGTCAAATAGTACAGGGACATAACACATGCCACTTGGATTTGGTGTTTACGCATGCAGGAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCA</genome_strand>
        <mrna_strand>AACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG.......................................................................AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG......................................................................................................................ATAACTGATATTGCAAATGACATTGGTGTTGGCGCACACTTCAACCCATTTGTGTCTTGCAACAACAAG.........................................................ATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG.......................................................................................GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585028" ref_strand="-" ref_description="SGN-U585028 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157338577|emb|CAO41928.1| (e_value=5e-41) unnamed; (*ATH) AT3G47630.2 (e_value=5e-37) | Symbol: None | similar to Hypothetical protein CBG04116 [Caenorhabditis briggsae] (GB:CAE60498.1) | chr3:17574031-17576414 REVERSE | Aliases: None; ">
      <seq>tacatgaatttcttcattgcatatgatcccaggtgacaaaaatgtacaaggacagtcccatttattgagggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttccaccttggtttcttctcttccttcatcaatcagaagtgagatggccatgaaacttggagaaaagagaattctggatgactctggtagagttagacaacaaatagtgattggttcaaaagaacaggctgctgagtgcatgcagaggctagttagacgaaaggttatgttttctagcacaaggcaggctgttgcaggtttattgactgctggtgctgttcatggagtcagatatgtagcaaacaagatgcgcaaggcttggaaatcttgggtgtaattgtttcctgtttttgggtgacatcacgtcttttaactggttcagacatggggatatagccacaaccacagttacacctaatgacatgcggttcaacgatggagttcttagcatggatagagtttgccgactctcctgctgctttttcaaaataagacaaatagaatttgaggggggaaataaccaacaacccatcaaaaaatttcttctgaaagttttctgttcacttgtattcttttcttttatttatttcaaaggtgggaagagttcttcagggaaggtcgagctgttgtatgtttagaacatcctggtgaaaagaagttaatcaatgtttctaaacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="+" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="67736" stop="70102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68036" g_stop="68196" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68197" i_stop="68845" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68846" g_stop="68951" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="266" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68952" i_stop="69267" i_length="316">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69268" g_stop="69802" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="801" r_length="535" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="+" ref_id="SGN-U585028" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585028" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68036" e_stop="68196"/>
          <exon e_start="68846" e_stop="68951"/>
          <exon e_start="69268" e_stop="69802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTGGTACGTAAATCAACTGCAAAAAGAGTGAATTTTCTGGAAAGAATCTTAAAATTTCCTGTTCTTTCAGATTTTTTCCCTTGTTAGTAGTTCCTGTTGAATTGTGTCTAACTTCCTCATTAGTGAACATACACTTATATTTTAGTTATTTCACGTCTGTAACTCTTACGCTTAGATCCTGATACCATGTTGGATTGTGTGCTTGTCTCATCTCTAGAGAAAAGTTCTATTTAGTTATATTACTTGTTATGATAAGCTCTTCTAATGTTCCCTCCTCAGCTTAATCAAATCATTTCACCTATGCCATATTTTCTTGTAGGTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGG</genome_strand>
        <mrna_strand>TACATGAATTTCTTCATTGCATATGATCCCAGGTG-ACAAAAATGTACAAGGACAGTCCCATTTATTGAGGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG............................................................................................................................................................................................................................................................................................................................GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACGATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580294" ref_strand="+" ref_description="SGN-U580294 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|15235288|ref|NP_193742.1| (e_value=6e-15) pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]; (*ATH) AT4G20090.1 (e_value=4e-17) | Symbol: EMB1025 | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr4:10868410-10870392 REVERSE | Aliases: F18F4.190, F18F4_190, EMB1025, EMBRYO DEFECTIVE 1025; ">
      <seq>ctctctctgaactatctaagtcgagaaaaagagagccccaccccttccgcttccgtttttctgccctactcccgctaccctcctcgctgttttcatcttcctcatcagcgtctctcagagacctccttcattttgttgagcctaaaagattcttatatttaaggtttaaaccctgcatagatgatcattatcagaagtttttgtttttcttcatgagaatctgagttgaaaaggcatgctcttttactccttccgtaccaaacagttcacttcaaagctaatcccatgtaagtctttctctaacttcaccattaaccgtgtattctcagctctatctaacccttctcatactgaccaagaacctgaaatagactattcaatttctactttgaaaactgaaatgggactacccaaattgagttctcgtggaactgaaatggaaatacccatatctgataactcaatgaagattgccccaatacctaagtttaattcttgtgtaactgaagtagaagaacccctttctgataaatcatttaaagttaccctaaaacccaacttgggttcttgtgaaactgaagtggaagtaccaatttcagacaagctatttaaagaggctccaaagttgggttctttcaaattgggtgattctacattctattctcttattgagaagtatgctaattccgaggactttacgtctttggagnanggnttttggtagaatgaagtgtgaaaaaagagtctttattgagaanagttttatcttantgtttagagctnatggaaaagcccgtttgnctgaaaagctgnngagttgntngaaana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0021D12-czOkm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0021D12.1" temp_strand="-" temp_description="C02SLm0021D12.1  AC215475.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0021D12 sequenced_by:kribb upload_account_name:korea">
        <position start="78339" stop="76918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78047" g_stop="77218" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0021D12.1" gen_strand="-" ref_id="SGN-U580294" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0021D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78047" e_stop="77218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGAAATTAACTATCTAAGTCGAGAAAAAGAGAGCCCCACCCCTTCCGCTTCCGTTTTTCTGCCCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGAAACTGAAGTGGAAGTACCAATTTCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTCTTTCAAATTGGGTGATTCTACATTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGACTTTACGTCTTTGGAG-AAGGTTTTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGAGAAGAGTTTTATCTTAGTGTTTAGAGCTTATGGAAAAGCCCGTTTGCCTGAAAAAGCTGTTGAGTTGTTTGAAAGA</genome_strand>
        <mrna_strand>CTCT-CTCTGAACTATCTAAGTCGAGAAAAAGAGAGCCCCACCCCTTCCGCTTCCGTTTTTCTGCCCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTCGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGAAACTGAAGTGGAAGTACCAATTTCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTCTTTCAAATTGGGTGATTCTACATTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGACTTTACGTCTTTGGAGNANGGNTTTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGAGAANAGTTTTATCTTANTGTTTAGAGCTNATGGAAAAGCCCGTTTGNCTG-AAAAGCTGNNGAGTTGNTNGAAANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10844" PGL_stop="9113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10844" e_stop="10068"/>
            <exon e_start="9971" e_stop="9319"/>
            <exon e_start="9140" e_stop="9113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="0.905"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.899"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="10844" e_stop="10068" e_length="777"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10067" i_stop="9972" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="9971" e_stop="9319" e_length="653"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9318" i_stop="9141" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="9140" e_stop="9113" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10844" stop="10068"/>
              <exon start="9971" stop="9319"/>
              <exon start="9140" stop="9113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAATTGTCTAAGGATTAAGTAGTGTTATCTGTTAATATAATCATGGCTTTTGCATCATTATCATCACCATCGCTTGTTTCAGTTTGTGACAAAACCTTTATTAAACCTTCTTCTCTCACCCCTCCTACTCTTAAATACCACAAACTATCTTACATTGATCAATTCTATAGCAATATGTATATTCCTTTGGCATTTTTTTACCCTAAAGTACAACAAAGAGAGGAGTCAACTGATAATGAACTATCCCAAATAGCACACTTGCTACAAACATCTCTATCAAAAACTCTAGTCTTTTACTATCCTTATGCTGGAAAATTGAGAGACAATGCTACTATTGATTGTAACGATATGGGAGCTGAGTTTTTAAGTGTTCGAATAAATTGTACCATGTTTGAAATACTCAATCATCCTGATGCATCTCAAGCAGAGAGTATAGTTTTTCCCAAGGACTTGCCTTGGGCGAATAACTATGAAGGTGGTAATTTACTTGTTGCGCAAGTAAGTAAGTTTGATTGTGGGGGAATAGCTATCAGTGTGTGCTTAGCGCACAAGATTGGTGATGGAACCTCTGCGCTTAATTTCGTTAATGATTGGTCTCGTATGACTCTTAGTCCTATGACAACTACCTTGTCTCCTAAATTTGTAGGAGATTCTATTTTCTCGTCAAATAAGTATAGTCCTATTATTACGCCACAAATGTTGTCTGATGTCAGTGAATGTGTACAAAAAAGAATCATTTTTCCTACAACCAAGTTAGACGCACTTCGAGCTAAG : GTAGCAGCAGAATCGGGAGTAGAAAATCCAACTAGGGCTGAAGTGGTGAGCGCGCTACTTTTCAAATGTGCAATTAAGGCAACATCAAGTACAACTACTTCAATGCGTCCATCAAAGTTTGTTCACCTTTTGAACGTACGTAGTATGCTGAAATCTCGTCTACCTCAAAGTACCATTGGGAATATCTTGTCCAGTTTCACCACAACAGCAACTAAGGAAGAAGACATTGAGTTGCCAACGTTGGTTCGTAGTTTAAGGAAGGGAGTTGAGGAGGCGCACAAGAAAGATCATGTGGAACAAAATGAAATGATGTTAGAAGTAGTGGAATCGATGAGAAAAGGGAAAAAACCATATGATGATGATTATGAGAATGTGTATTCTTGTTGTAATCTTTGTAAATTTCCATTGTATAAAGTGGATTTTGGATGGGGAAAACCTGAAAGAGTTAGTTTACCAAATGGTCCGTTCAAGAATTTTTTCTTCTTGAATGATTACAAAATTGGTGAAGGTGTGGATGCGCGGGTAATGTTGGACAAACAACATATGTCTGAATTTGAACGCGATGAGGAGCTTCTTGACCTTATTTCCTAGTTGATTACATGATTTTAGGATTTCATTTGTGTTGTGATGGCTTTGTTTTCCGTTCATCTACT : TAATAACTTTATCTTTAGTATTAATCTT</gDNA_template>
            <first_frame> S  K  L  S  K  D  *  V  V  L  S  V  N  I  I  M  A  F  A  S  L  S  S  P  S  L  V  S  V  C  D  K  T  F  I  K  P  S  S  L  T  P  P  T  L  K  Y  H  K  L  S  Y  I  D  Q  F  Y  S  N  M  Y  I  P  L  A  F  F  Y  P  K  V  Q  Q  R  E  E  S  T  D  N  E  L  S  Q  I  A  H  L  L  Q  T  S  L  S  K  T  L  V  F  Y  Y  P  Y  A  G  K  L  R  D  N  A  T  I  D  C  N  D  M  G  A  E  F  L  S  V  R  I  N  C  T  M  F  E  I  L  N  H  P  D  A  S  Q  A  E  S  I  V  F  P  K  D  L  P  W  A  N  N  Y  E  G  G  N  L  L  V  A  Q  V  S  K  F  D  C  G  G  I  A  I  S  V  C  L  A  H  K  I  G  D  G  T  S  A  L  N  F  V  N  D  W  S  R  M  T  L  S  P  M  T  T  T  L  S  P  K  F  V  G  D  S  I  F  S  S  N  K  Y  S  P  I  I  T  P  Q  M  L  S  D  V  S  E  C  V  Q  K  R  I  I  F  P  T  T  K  L  D  A  L  R  A  K  :  V  A  A  E  S  G  V  E  N  P  T  R  A  E  V  V  S  A  L  L  F  K  C  A  I  K  A  T  S  S  T  T  T  S  M  R  P  S  K  F  V  H  L  L  N  V  R  S  M  L  K  S  R  L  P  Q  S  T  I  G  N  I  L  S  S  F  T  T  T  A  T  K  E  E  D  I  E  L  P  T  L  V  R  S  L  R  K  G  V  E  E  A  H  K  K  D  H  V  E  Q  N  E  M  M  L  E  V  V  E  S  M  R  K  G  K  K  P  Y  D  D  D  Y  E  N  V  Y  S  C  C  N  L  C  K  F  P  L  Y  K  V  D  F  G  W  G  K  P  E  R  V  S  L  P  N  G  P  F  K  N  F  F  F  L  N  D  Y  K  I  G  E  G  V  D  A  R  V  M  L  D  K  Q  H  M  S  E  F  E  R  D  E  E  L  L  D  L  I  S  *  L  I  T  *  F  *  D  F  I  C  V  V  M  A  L  F  S  V  H  L  L :   N  N  F  I  F  S  I  N  L </first_frame>
            <second_frame>  A  N  C  L  R  I  K  *  C  Y  L  L  I  *  S  W  L  L  H  H  Y  H  H  H  R  L  F  Q  F  V  T  K  P  L  L  N  L  L  L  S  P  L  L  L  L  N  T  T  N  Y  L  T  L  I  N  S  I  A  I  C  I  F  L  W  H  F  F  T  L  K  Y  N  K  E  R  S  Q  L  I  M  N  Y  P  K  *  H  T  C  Y  K  H  L  Y  Q  K  L  *  S  F  T  I  L  M  L  E  N  *  E  T  M  L  L  L  I  V  T  I  W  E  L  S  F  *  V  F  E  *  I  V  P  C  L  K  Y  S  I  I  L  M  H  L  K  Q  R  V  *  F  F  P  R  T  C  L  G  R  I  T  M  K  V  V  I  Y  L  L  R  K  *  V  S  L  I  V  G  E  *  L  S  V  C  A  *  R  T  R  L  V  M  E  P  L  R  L  I  S  L  M  I  G  L  V  *  L  L  V  L  *  Q  L  P  C  L  L  N  L  *  E  I  L  F  S  R  Q  I  S  I  V  L  L  L  R  H  K  C  C  L  M  S  V  N  V  Y  K  K  E  S  F  F  L  Q  P  S  *  T  H  F  E  L  R :   *  Q  Q  N  R  E  *  K  I  Q  L  G  L  K  W  *  A  R  Y  F  S  N  V  Q  L  R  Q  H  Q  V  Q  L  L  Q  C  V  H  Q  S  L  F  T  F  *  T  Y  V  V  C  *  N  L  V  Y  L  K  V  P  L  G  I  S  C  P  V  S  P  Q  Q  Q  L  R  K  K  T  L  S  C  Q  R  W  F  V  V  *  G  R  E  L  R  R  R  T  R  K  I  M  W  N  K  M  K  *  C  *  K  *  W  N  R  *  E  K  G  K  N  H  M  M  M  I  M  R  M  C  I  L  V  V  I  F  V  N  F  H  C  I  K  W  I  L  D  G  E  N  L  K  E  L  V  Y  Q  M  V  R  S  R  I  F  S  S  *  M  I  T  K  L  V  K  V  W  M  R  G  *  C  W  T  N  N  I  C  L  N  L  N  A  M  R  S  F  L  T  L  F  P  S  *  L  H  D  F  R  I  S  F  V  L  *  W  L  C  F  P  F  I  Y   : L  I  T  L  S  L  V  L  I   </second_frame>
            <third_frame>   Q  I  V  *  G  L  S  S  V  I  C  *  Y  N  H  G  F  C  I  I  I  I  T  I  A  C  F  S  L  *  Q  N  L  Y  *  T  F  F  S  H  P  S  Y  S  *  I  P  Q  T  I  L  H  *  S  I  L  *  Q  Y  V  Y  S  F  G  I  F  L  P  *  S  T  T  K  R  G  V  N  *  *  *  T  I  P  N  S  T  L  A  T  N  I  S  I  K  N  S  S  L  L  L  S  L  C  W  K  I  E  R  Q  C  Y  Y  *  L  *  R  Y  G  S  *  V  F  K  C  S  N  K  L  Y  H  V  *  N  T  Q  S  S  *  C  I  S  S  R  E  Y  S  F  S  Q  G  L  A  L  G  E  *  L  *  R  W  *  F  T  C  C  A  S  K  *  V  *  L  W  G  N  S  Y  Q  C  V  L  S  A  Q  D  W  *  W  N  L  C  A  *  F  R  *  *  L  V  S  Y  D  S  *  S  Y  D  N  Y  L  V  S  *  I  C  R  R  F  Y  F  L  V  K  *  V  *  S  Y  Y  Y  A  T  N  V  V  *  C  Q  *  M  C  T  K  K  N  H  F  S  Y  N  Q  V  R  R  T  S  S  *   : G  S  S  R  I  G  S  R  K  S  N  *  G  *  S  G  E  R  A  T  F  Q  M  C  N  *  G  N  I  K  Y  N  Y  F  N  A  S  I  K  V  C  S  P  F  E  R  T  *  Y  A  E  I  S  S  T  S  K  Y  H  W  E  Y  L  V  Q  F  H  H  N  S  N  *  G  R  R  H  *  V  A  N  V  G  S  *  F  K  E  G  S  *  G  G  A  Q  E  R  S  C  G  T  K  *  N  D  V  R  S  S  G  I  D  E  K  R  E  K  T  I  *  *  *  L  *  E  C  V  F  L  L  *  S  L  *  I  S  I  V  *  S  G  F  W  M  G  K  T  *  K  S  *  F  T  K  W  S  V  Q  E  F  F  L  L  E  *  L  Q  N  W  *  R  C  G  C  A  G  N  V  G  Q  T  T  Y  V  *  I  *  T  R  *  G  A  S  *  P  Y  F  L  V  D  Y  M  I  L  G  F  H  L  C  C  D  G  F  V  F  R  S  S  T  :  *  *  L  Y  L  *  Y  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10823" stop="10068"/>
                    <exon start="9971" stop="9381"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVLSVNIIMAFASLSSPSLVSVCDKTFIKPSSLTPPTLKYHKLSYIDQFYSNMYIPLAFFYPKVQQREESTDNELSQIAHLLQTSLSKTLVFYYPYAGKLRDNATIDCNDMGAEFLSVRINCTMFEILNHPDASQAESIVFPKDLPWANNYEGGNLLVAQVSKFDCGGIAISVCLAHKIGDGTSALNFVNDWSRMTLSPMTTTLSPKFVGDSIFSSNKYSPIITPQMLSDVSECVQKRIIFPTTKLDALRAKVAAESGVENPTRAEVVSALLFKCAIKATSSTTTSMRPSKFVHLLNVRSMLKSRLPQSTIGNILSSFTTTATKEEDIELPTLVRSLRKGVEEAHKKDHVEQNEMMLEVVESMRKGKKPYDDDYENVYSCCNLCKFPLYKVDFGWGKPERVSLPNGPFKNFFFLNDYKIGEGVDARVMLDKQHMSEFERDEELLDLIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="24682" PGL_stop="23911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24682" e_stop="23911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="24682" e_stop="23911" e_length="772"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24682" stop="23911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24558" stop="24094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATGGAAATTGAAATCTTATACAAAAAGCTCATAAAGCCATTTTTACCTACTCCTTCTCACCTTCAACATTACAAGCTCTCATTCTTCGACCAAATAGCTTTGAAAGAACATGTCCCCATTGTTCTTTTCTATGCTAATAATAAATTCATCAACAACTTCACAATCGATGAACGAATTAAGCAATCTCTTTCGAAGGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTACGATAAAGATGAATGTTCGATTCTTTGTCTTGATCAAGGTATTTCTTATACTAAGGCCAAGGTAAATTGTAAGTTGAATAATTTCTTAGAGAAAGCACACAGGGACCTTAGTCTTGCAGCTTTATTTTGGCCACACGAAAATAAGTATATAAATAAAAGTAATTTAATGGTTTCACCAATTGTAACGGCACAAGTAACTGAGTTTGAATGTGGTGGTCTCGCGGTCTCATTGAGCAGTTCACACCCTGCGATGGATGGTTTCTCAAATATTAAATTTCTTTTAGAGTGGGCAAAAGTGTGTAAAATGGAAACTCCTGTTGAGAATATTAATTTTCTAAGATTCAATTTAGGTAATGTTTTTCCAACAAGAGATATATCAAGACTTTTCAAGTCAACTTATGATCCAGTAATAGAGAAAGATATTGTTACGAAGAGATTTATTATTTGTGAGACTATTATGTCAAGGCTAAGAAAAAAATGCATTGATGAAGCGCGTGGAGCTTTGACTTTTCAACCGACAAGAGTTGAAATTATTAC</gDNA_template>
            <first_frame> Q  K  W  K  L  K  S  Y  T  K  S  S  *  S  H  F  Y  L  L  L  L  T  F  N  I  T  S  S  H  S  S  T  K  *  L  *  K  N  M  S  P  L  F  F  S  M  L  I  I  N  S  S  T  T  S  Q  S  M  N  E  L  S  N  L  F  R  R  Y  *  L  M  F  I  Q  Q  Q  E  G  T  I  K  M  N  V  R  F  F  V  L  I  K  V  F  L  I  L  R  P  R  *  I  V  S  *  I  I  S  *  R  K  H  T  G  T  L  V  L  Q  L  Y  F  G  H  T  K  I  S  I  *  I  K  V  I  *  W  F  H  Q  L  *  R  H  K  *  L  S  L  N  V  V  V  S  R  S  H  *  A  V  H  T  L  R  W  M  V  S  Q  I  L  N  F  F  *  S  G  Q  K  C  V  K  W  K  L  L  L  R  I  L  I  F  *  D  S  I  *  V  M  F  F  Q  Q  E  I  Y  Q  D  F  S  S  Q  L  M  I  Q  *  *  R  K  I  L  L  R  R  D  L  L  F  V  R  L  L  C  Q  G  *  E  K  N  A  L  M  K  R  V  E  L  *  L  F  N  R  Q  E  L  K  L  L  </first_frame>
            <second_frame>  K  N  G  N  *  N  L  I  Q  K  A  H  K  A  I  F  T  Y  S  F  S  P  S  T  L  Q  A  L  I  L  R  P  N  S  F  E  R  T  C  P  H  C  S  F  L  C  *  *  *  I  H  Q  Q  L  H  N  R  *  T  N  *  A  I  S  F  E  G  I  N  S  C  L  S  S  S  R  K  V  R  *  R  *  M  F  D  S  L  S  *  S  R  Y  F  L  Y  *  G  Q  G  K  L  *  V  E  *  F  L  R  E  S  T  Q  G  P  *  S  C  S  F  I  L  A  T  R  K  *  V  Y  K  *  K  *  F  N  G  F  T  N  C  N  G  T  S  N  *  V  *  M  W  W  S  R  G  L  I  E  Q  F  T  P  C  D  G  W  F  L  K  Y  *  I  S  F  R  V  G  K  S  V  *  N  G  N  S  C  *  E  Y  *  F  S  K  I  Q  F  R  *  C  F  S  N  K  R  Y  I  K  T  F  Q  V  N  L  *  S  S  N  R  E  R  Y  C  Y  E  E  I  Y  Y  L  *  D  Y  Y  V  K  A  K  K  K  M  H  *  *  S  A  W  S  F  D  F  S  T  D  K  S  *  N  Y  Y </second_frame>
            <third_frame>   K  M  E  I  E  I  L  Y  K  K  L  I  K  P  F  L  P  T  P  S  H  L  Q  H  Y  K  L  S  F  F  D  Q  I  A  L  K  E  H  V  P  I  V  L  F  Y  A  N  N  K  F  I  N  N  F  T  I  D  E  R  I  K  Q  S  L  S  K  V  L  T  H  V  Y  P  A  A  G  R  Y  D  K  D  E  C  S  I  L  C  L  D  Q  G  I  S  Y  T  K  A  K  V  N  C  K  L  N  N  F  L  E  K  A  H  R  D  L  S  L  A  A  L  F  W  P  H  E  N  K  Y  I  N  K  S  N  L  M  V  S  P  I  V  T  A  Q  V  T  E  F  E  C  G  G  L  A  V  S  L  S  S  S  H  P  A  M  D  G  F  S  N  I  K  F  L  L  E  W  A  K  V  C  K  M  E  T  P  V  E  N  I  N  F  L  R  F  N  L  G  N  V  F  P  T  R  D  I  S  R  L  F  K  S  T  Y  D  P  V  I  E  K  D  I  V  T  K  R  F  I  I  C  E  T  I  M  S  R  L  R  K  K  C  I  D  E  A  R  G  A  L  T  F  Q  P  T  R  V  E  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24680" stop="23913"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEIEILYKKLIKPFLPTPSHLQHYKLSFFDQIALKEHVPIVLFYANNKFINNFTIDERIKQSLSKVLTHVYPAAGRYDKDECSILCLDQGISYTKAKVNCKLNNFLEKAHRDLSLAALFWPHENKYINKSNLMVSPIVTAQVTEFECGGLAVSLSSSHPAMDGFSNIKFLLEWAKVCKMETPVENINFLRFNLGNVFPTRDISRLFKSTYDPVIEKDIVTKRFIICETIMSRLRKKCIDEARGALTFQPTRVEII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="49004" PGL_stop="49619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49004" e_stop="49619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49004" e_stop="49619" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49004" stop="49619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCTACCTGAAACTTAACCCACCGAAAGCCGCCATGACTGACGTTGAGCTCTCTCGCTCAGAGAAGAAGAAAAAGAAATCAAAGTCTGGCAAAAATGATGACGAAACACAAACACTATCCACCCCAATTGATGGTGATTTTCTCATCAAACCTCAAAGCTACACACCCACCATTGACACTTCAGAATGGCCGATTCTATTGAAAAACTACGATCGTCTCAATGTCAGAACGGGTCACTACACTCCTCTCCCATCTGGGTTTTCTCCATTGAAGCGTCCGCTTGCTGAGTATATAAGGTATGGTATTCTTAATCTTGATAAACCTGCTAACCCATCTTCACATGAAGTTGTAGCTTGGATTAAGAGGATTCTTCGGGTCGAGAAAACGGGTCATAGTGGTACTTTGGATCCTAAAGTTACTGGGAATTTGATTGTTTGTATTGATAGAGCGACCCGTTTGGTTAAATCCCAACAGGGTGCGGGTAAAGAGTATGTGTGTGTTGCTAGGTTGCATTCTGATGTACCTGATGTTGCTAAGGTTGCTAGGGCACTTGAAGCTCTTACTGGGGCTGTTTTTCAAAGACCCCCTTTGATTTCTGCTGTGAAAAGGCAGCTT</gDNA_template>
            <first_frame> T  L  P  E  T  *  P  T  E  S  R  H  D  *  R  *  A  L  S  L  R  E  E  E  K  E  I  K  V  W  Q  K  *  *  R  N  T  N  T  I  H  P  N  *  W  *  F  S  H  Q  T  S  K  L  H  T  H  H  *  H  F  R  M  A  D  S  I  E  K  L  R  S  S  Q  C  Q  N  G  S  L  H  S  S  P  I  W  V  F  S  I  E  A  S  A  C  *  V  Y  K  V  W  Y  S  *  S  *  *  T  C  *  P  I  F  T  *  S  C  S  L  D  *  E  D  S  S  G  R  E  N  G  S  *  W  Y  F  G  S  *  S  Y  W  E  F  D  C  L  Y  *  *  S  D  P  F  G  *  I  P  T  G  C  G  *  R  V  C  V  C  C  *  V  A  F  *  C  T  *  C  C  *  G  C  *  G  T  *  S  S  Y  W  G  C  F  S  K  T  P  F  D  F  C  C  E  K  A  A  </first_frame>
            <second_frame>  P  Y  L  K  L  N  P  P  K  A  A  M  T  D  V  E  L  S  R  S  E  K  K  K  K  K  S  K  S  G  K  N  D  D  E  T  Q  T  L  S  T  P  I  D  G  D  F  L  I  K  P  Q  S  Y  T  P  T  I  D  T  S  E  W  P  I  L  L  K  N  Y  D  R  L  N  V  R  T  G  H  Y  T  P  L  P  S  G  F  S  P  L  K  R  P  L  A  E  Y  I  R  Y  G  I  L  N  L  D  K  P  A  N  P  S  S  H  E  V  V  A  W  I  K  R  I  L  R  V  E  K  T  G  H  S  G  T  L  D  P  K  V  T  G  N  L  I  V  C  I  D  R  A  T  R  L  V  K  S  Q  Q  G  A  G  K  E  Y  V  C  V  A  R  L  H  S  D  V  P  D  V  A  K  V  A  R  A  L  E  A  L  T  G  A  V  F  Q  R  P  P  L  I  S  A  V  K  R  Q  L </second_frame>
            <third_frame>   P  T  *  N  L  T  H  R  K  P  P  *  L  T  L  S  S  L  A  Q  R  R  R  K  R  N  Q  S  L  A  K  M  M  T  K  H  K  H  Y  P  P  Q  L  M  V  I  F  S  S  N  L  K  A  T  H  P  P  L  T  L  Q  N  G  R  F  Y  *  K  T  T  I  V  S  M  S  E  R  V  T  T  L  L  S  H  L  G  F  L  H  *  S  V  R  L  L  S  I  *  G  M  V  F  L  I  L  I  N  L  L  T  H  L  H  M  K  L  *  L  G  L  R  G  F  F  G  S  R  K  R  V  I  V  V  L  W  I  L  K  L  L  G  I  *  L  F  V  L  I  E  R  P  V  W  L  N  P  N  R  V  R  V  K  S  M  C  V  L  L  G  C  I  L  M  Y  L  M  L  L  R  L  L  G  H  L  K  L  L  L  G  L  F  F  K  D  P  L  *  F  L  L  *  K  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49005" stop="49619"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLKLNPPKAAMTDVELSRSEKKKKKSKSGKNDDETQTLSTPIDGDFLIKPQSYTPTIDTSEWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSDVPDVAKVARALEALTGAVFQRPPLISAVKRQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="51233" PGL_stop="50364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51233" e_stop="50364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="51233" e_stop="50364" e_length="870"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51233" stop="50364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAACGGCAAAATTTTGAACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACATCTAAATCATCCAATTTTCTCTTGTTAGCGTCCTCATCATCTTCCTTGTGTTTCTTCTTTTTCTTCTCAACCTCAACTGCAGCACCATCAGC</gDNA_template>
            <first_frame> K  K  N  S  S  T  L  E  Q  P  F  *  D  R  R  C  *  T  V  A  K  I  F  L  L  P  C  K  L  P  A  L  E  L  T  I  H  T  I  Q  L  Q  T  K  A  V  V  M  Q  L  I  S  C  I  S  A  T  D  I  Y  R  Q  *  S  T  K  T  E  N  I  S  K  F  R  *  K  T  A  L  W  I  E  I  L  K  S  *  Q  I  K  K  V  K  L  I  N  *  *  A  R  L  *  P  G  T  S  A  A  T  N  S  C  P  K  T  S  E  *  T  A  K  F  *  T  T  *  R  A  F  *  H  T  *  E  H  T  Q  L  G  *  K  P  S  P  L  L  L  L  S  I  I  F  I  L  L  F  L  L  I  L  L  L  A  F  T  S  F  I  V  T  S  N  I  T  I  L  *  F  F  I  F  L  L  F  L  F  L  L  L  G  L  L  L  I  *  G  C  N  I  V  I  L  F  V  L  L  F  L  F  L  F  H  R  L  H  I  R  G  C  S  F  I  S  F  F  L  L  F  L  L  L  F  F  F  Q  F  R  L  I  Q  C  F  L  D  Y  L  Y  L  W  F  L  *  S  T  G  C  R  G  Y  I  *  I  I  Q  F  S  L  V  S  V  L  I  I  F  L  V  F  L  L  F  L  L  N  L  N  C  S  T  I  S </first_frame>
            <second_frame>  R  K  I  V  Q  H  L  S  S  P  S  K  I  E  G  A  K  Q  W  P  K  S  F  Y  C  L  A  N  F  L  P  *  N  *  L  Y  T  P  Y  S  F  K  Q  R  Q  L  L  C  S  *  L  V  V  F  Q  L  Q  T  S  T  G  N  E  V  Q  K  Q  K  T  S  Q  N  L  D  R  K  Q  P  Y  G  L  K  Y  S  S  L  D  K  *  K  R  *  N  *  L  T  N  K  H  V  Y  D  Q  E  L  Q  L  Q  Q  T  P  A  Q  K  Q  V  N  K  R  Q  N  F  E  L  H  D  V  H  F  N  I  H  R  S  T  L  N  W  G  K  N  L  H  L  Y  S  S  *  A  S  S  L  F  F  F  F  F  L  S  F  F  L  L  L  L  P  S  S  S  L  P  T  S  P  F  S  D  S  L  S  F  F  F  F  F  F  F  F  S  D  F  S  S  S  E  D  A  T  S  L  F  S  L  S  F  F  F  F  S  F  F  T  D  S  T  S  G  D  A  A  S  S  A  S  F  F  F  F  F  F  F  S  F  F  S  S  D  L  S  N  A  S  S  T  T  S  T  F  G  F  F  K  A  L  G  A  G  D  T  S  K  S  S  N  F  L  L  L  A  S  S  S  S  S  L  C  F  F  F  F  F  S  T  S  T  A  A  P  S   </second_frame>
            <third_frame>   E  K  *  F  N  T  *  A  A  L  L  R  *  K  V  L  N  S  G  Q  N  L  S  T  A  L  Q  T  S  C  P  R  T  N  Y  T  H  H  T  A  S  N  K  G  S  C  Y  A  A  D  *  L  Y  F  S  Y  R  H  L  Q  A  M  K  Y  K  N  R  K  H  L  K  I  *  I  E  N  S  L  M  D  *  N  T  Q  V  L  T  N  K  K  G  K  T  N  *  L  I  S  T  S  M  T  R  N  F  S  C  N  K  L  L  P  K  N  K  *  I  N  G  K  I  L  N  Y  M  T  C  I  L  T  Y  I  G  A  H  S  I  G  V  K  T  F  T  S  T  P  L  E  H  H  L  Y  S  S  F  S  S  Y  P  S  S  C  F  Y  F  L  H  R  H  F  Q  H  H  H  S  L  I  L  Y  L  S  S  F  S  F  S  S  S  R  T  S  P  H  L  R  M  Q  H  R  Y  S  L  C  P  S  F  S  F  P  F  S  Q  T  P  H  Q  G  M  Q  L  H  Q  L  L  S  S  F  S  S  S  F  L  F  S  V  Q  T  Y  P  M  L  P  R  L  P  L  P  L  V  S  L  K  H  W  V  Q  G  I  H  L  N  H  P  I  F  S  C  *  R  P  H  H  L  P  C  V  S  S  F  S  S  Q  P  Q  L  Q  H  H  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50883" stop="50428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INGKILNYMTCILTYIGAHSIGVKTFTSTPLEHHLYSSFSSYPSSCFYFLHRHFQHHHSLILYLSSFSFSSSRTSPHLRMQHRYSLCPSFSFPFSQTPHQGMQLHQLLSSFSSSFLFSVQTYPMLPRLPLPLVSLKHWVQGIHLNHPIFSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50788" stop="50366"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSLFFFFFLSFFLLLLPSSSLPTSPFSDSLSFFFFFFFFSDFSSSEDATSLFSLSFFFFSFFTDSTSGDAASSASFFFFFFFSFFSSDLSNASSTTSTFGFFKALGAGDTSKSSNFLLLASSSSSLCFFFFFSTSTAAPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="59947" PGL_stop="56529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59947" e_stop="59807"/>
            <exon e_start="57400" e_stop="57100"/>
            <exon e_start="56909" e_stop="56703"/>
            <exon e_start="56564" e_stop="56529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="0.993"/>
          <exon-intron don_prob="0.628" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="59947" e_stop="59807" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="59806" i_stop="57401" i_length="2406"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57400" e_stop="57100" e_length="301"/>
          </exon>
          <intron i_serial="2" don_prob="0.628" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57099" i_stop="56910" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56909" e_stop="56703" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="56702" i_stop="56565" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56564" e_stop="56529" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59947" stop="59807"/>
              <exon start="57400" stop="57100"/>
              <exon start="56909" stop="56703"/>
              <exon start="56564" stop="56529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACATTTAATTGTATCTGAGCTAAAATAGGCTTCAAAATGAATTGAATATACACATAAACTGCTTCAAGAATCTAGCTTTATTTGAAAAGATAGCAATTTTATTGAAGCCCATTCTCTTTTTCATCCATTTCAGCTTCTGG : GACTGTAACACACAGGGTAGAGTTTTCTGTACAGTCATTTACAATGTCAATTTTAACGAAGTTACGCTGCATCACACTTGATGTTACCGGTACACTGATTGCTTACAAAGGAGAGTTGGGTGACTATTATTGCATGGCTGCCAAAGCTGCTGGGCAGCAATGTCCTGACTATAAGCGGGTTCATGAAGGTTTTAAACTAGCATATACAGAAATGGCAAAGAAGCATTCATGTTTTGGATTTGCTGAAAAGATTCCTAACATTGTTTGGTGGAAGACTTGTGTCAGGAATTCCTTTGTTCAG : GCAGGTTATGAATATGATGATGAGACATTTGAGAAGATATTTAGACGCATATATGCAACTTTTGGTTCTTCTGCACCTTACAACATATTTCCTGATGCTATACCGTTCCTCAGATGGCTCCGCGAGAGGGGCGTTACAGTTGGGTTGGTCAGCAATGCTGAGTATCGATATCAGGATGTGATTCTTCCTGCATTAGGCTTGAATCAG : GGATCTGAGTGGGATTTCGGCGTATTTTCCGGTCTT</gDNA_template>
            <first_frame> Y  I  *  L  Y  L  S  *  N  R  L  Q  N  E  L  N  I  H  I  N  C  F  K  N  L  A  L  F  E  K  I  A  I  L  L  K  P  I  L  F  F  I  H  F  S  F  W  :  D  C  N  T  Q  G  R  V  F  C  T  V  I  Y  N  V  N  F  N  E  V  T  L  H  H  T  *  C  Y  R  Y  T  D  C  L  Q  R  R  V  G  *  L  L  L  H  G  C  Q  S  C  W  A  A  M  S  *  L  *  A  G  S  *  R  F  *  T  S  I  Y  R  N  G  K  E  A  F  M  F  W  I  C  *  K  D  S  *  H  C  L  V  E  D  L  C  Q  E  F  L  C  S   : G  R  L  *  I  *  *  *  D  I  *  E  D  I  *  T  H  I  C  N  F  W  F  F  C  T  L  Q  H  I  S  *  C  Y  T  V  P  Q  M  A  P  R  E  G  R  Y  S  W  V  G  Q  Q  C  *  V  S  I  S  G  C  D  S  S  C  I  R  L  E  S   : G  I  *  V  G  F  R  R  I  F  R  S  </first_frame>
            <second_frame>  T  F  N  C  I  *  A  K  I  G  F  K  M  N  *  I  Y  T  *  T  A  S  R  I  *  L  Y  L  K  R  *  Q  F  Y  *  S  P  F  S  F  S  S  I  S  A  S  G :   T  V  T  H  R  V  E  F  S  V  Q  S  F  T  M  S  I  L  T  K  L  R  C  I  T  L  D  V  T  G  T  L  I  A  Y  K  G  E  L  G  D  Y  Y  C  M  A  A  K  A  A  G  Q  Q  C  P  D  Y  K  R  V  H  E  G  F  K  L  A  Y  T  E  M  A  K  K  H  S  C  F  G  F  A  E  K  I  P  N  I  V  W  W  K  T  C  V  R  N  S  F  V  Q  :  A  G  Y  E  Y  D  D  E  T  F  E  K  I  F  R  R  I  Y  A  T  F  G  S  S  A  P  Y  N  I  F  P  D  A  I  P  F  L  R  W  L  R  E  R  G  V  T  V  G  L  V  S  N  A  E  Y  R  Y  Q  D  V  I  L  P  A  L  G  L  N  Q  :  G  S  E  W  D  F  G  V  F  S  G  L </second_frame>
            <third_frame>   H  L  I  V  S  E  L  K  *  A  S  K  *  I  E  Y  T  H  K  L  L  Q  E  S  S  F  I  *  K  D  S  N  F  I  E  A  H  S  L  F  H  P  F  Q  L  L   : G  L  *  H  T  G  *  S  F  L  Y  S  H  L  Q  C  Q  F  *  R  S  Y  A  A  S  H  L  M  L  P  V  H  *  L  L  T  K  E  S  W  V  T  I  I  A  W  L  P  K  L  L  G  S  N  V  L  T  I  S  G  F  M  K  V  L  N  *  H  I  Q  K  W  Q  R  S  I  H  V  L  D  L  L  K  R  F  L  T  L  F  G  G  R  L  V  S  G  I  P  L  F  R :   Q  V  M  N  M  M  M  R  H  L  R  R  Y  L  D  A  Y  M  Q  L  L  V  L  L  H  L  T  T  Y  F  L  M  L  Y  R  S  S  D  G  S  A  R  G  A  L  Q  L  G  W  S  A  M  L  S  I  D  I  R  M  *  F  F  L  H  *  A  *  I  R :   D  L  S  G  I  S  A  Y  F  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59841" stop="59807"/>
                    <exon start="57400" stop="57100"/>
                    <exon start="56909" stop="56703"/>
                    <exon start="56564" stop="56529"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPFSFSSISASGTVTHRVEFSVQSFTMSILTKLRCITLDVTGTLIAYKGELGDYYCMAAKAAGQQCPDYKRVHEGFKLAYTEMAKKHSCFGFAEKIPNIVWWKTCVRNSFVQAGYEYDDETFEKIFRRIYATFGSSAPYNIFPDAIPFLRWLRERGVTVGLVSNAEYRYQDVILPALGLNQGSEWDFGVFSGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="65009" PGL_stop="69802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65053" e_stop="65592"/>
            <exon e_start="65664" e_stop="65726"/>
            <exon e_start="65845" e_stop="65913"/>
            <exon e_start="65971" e_stop="66063"/>
            <exon e_start="67476" e_stop="67580"/>
            <exon e_start="67668" e_stop="68196"/>
            <exon e_start="68846" e_stop="68951"/>
            <exon e_start="69268" e_stop="69802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.516" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.741" e_score="0.986"/>
          <exon-intron don_prob="0.827" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65053" e_stop="65592" e_length="540"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.516">
            <gDNA_intron_boundary i_start="65593" i_stop="65663" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65664" e_stop="65726" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65727" i_stop="65844" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="65845" e_stop="65913" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.741">
            <gDNA_intron_boundary i_start="65914" i_stop="65970" i_length="57"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65971" e_stop="66063" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.827" acc_prob="0.972">
            <gDNA_intron_boundary i_start="66064" i_stop="67475" i_length="1412"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67476" e_stop="67580" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="67581" i_stop="67667" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67668" e_stop="68196" e_length="529"/>
          </exon>
          <intron i_serial="6" don_prob="0.882" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68197" i_stop="68845" i_length="649"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68846" e_stop="68951" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.843">
            <gDNA_intron_boundary i_start="68952" i_stop="69267" i_length="316"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="69268" e_stop="69802" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65053" stop="65592"/>
              <exon start="65664" stop="65726"/>
              <exon start="65845" stop="65913"/>
              <exon start="65971" stop="66063"/>
              <exon start="67476" stop="67580"/>
              <exon start="67668" stop="68196"/>
              <exon start="68846" stop="68870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68036" stop="68196"/>
              <exon start="68846" stop="68951"/>
              <exon start="69268" stop="69802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585028" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG : AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG : ATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAG : ATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA : GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG : GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG : GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG : GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGG</gDNA_template>
            <first_frame> N  L  K  P  L  K  T  P  G  T  *  L  K  R  F  A  K  L  I  A  K  F  C  *  L  G  F  K  L  H  M  C  T  D  Q  *  V  V  T  N  A  L  S  *  *  F  Q  A  C  L  P  D  V  *  *  N  S  C  E  N  T  S  R  F  *  S  N  *  T  Y  V  C  M  Y  H  I  T  *  F  L  F  C  F  H  M  L  M  *  K  W  W  D  R  I  K  L  S  *  G  V  C  L  K  F  Y  P  R  *  S  F  A  V  Y  M  V  L  N  F  I  P  T  T  K  M  R  F  F  L  L  P  S  F  G  *  *  I  P  L  M  V  L  F  D  Q  E  V  L  *  N  T  A  I  V  H  C  *  Q  I  H  C  *  T  S  M  T  D  Y  I  I  G  V  S  D  P  R  Q  W  H  S  E  :  N  L  K  L  N  K  D  H  Y  A  S  C  L  I  R  L  G  G  A  R  M  :  I  T  D  I  A  N  D  I  G  V  G  V  H  F  N  P  F  V  S  C  N  N  K  :  M  F  K  Y  G  V  V  R  M  H  D  L  I  Q  D  I  L  G  W  E  R  F  Y  L  S  G  R  L  Q  K  P  :  V  N  I  L  T  D  N  L  D  I  K  S  V  N  S  V  N  L  K  A  A  T  S  A  A  L  L  L  L  P  S  K  F  T  E  :  E  D  L  Y  A  K  I  C  S  L  S  Y  T  G  D  L  R  M  L  F  A  E  D  K  N  K  V  D  L  T  F  E  W  V  *  I  L  K  F  C  G  P  D  C  T  T  W  K  Y  Q  S  T  S  K  F  I  V  *  L  G  S  F  S  I  L  *  F  Y  I  T  S  S  G  S  M  N  I  S  *  F  A  S  H  I  Y  K  I  S  F  L  D  *  N  L  N  L  N  F  *  H  S  I  S  *  C  I  G  N  F  H  A  T  L  I  D  *  I  D  S  S  I  P  C  T  *  I  S  S  L  H  I  D  P  G  E  Q  N  C  T  R  T  V  P  F  I  *  G  N  V  *  A  I  S  G  R  I  R  G  Q  K  L  V  E  I  F  S  S  W  *  *  A  S  K  H  I  S   : G  L  W  I  I  C  C  F  H  L  G  F  F  S  S  F  I  N  Q  K  *  D  G  H  E  T  W  R  K  E  N  S  G  *  L  W :   *  S  *  T  T  N  S  D  W  F  K  R  T  G  C  *  V  H  A  E  A  S  *  T  K  G  Y  V  F  *  H  K  A  G  C  C  R  F  I  D  C  W  C  C  S  W  S  Q  I  C  S  K  Q  D  A  Q  G  L  E  I  L  G  V  I  V  S  C  F  W  V  T  S  R  L  L  T  G  S  D  M  G  I  *  P  Q  P  Q  L  H  L  M  T  C  G  S  T  M  E  F  L  A  W  I  E  F  A  D  S  P  A  A  F  S  K  *  D  K  *  N  L  R  G  E  I  T  N  N  P  S  K  N  F  F  *  K  F  S  V  H  L  Y  S  F  L  L  F  I  S  K  V  G  R  V  L  Q  G  R  S  S  C  C  M  F  R  T  S  W  *  K  E  V  N  Q  C  F  *  T  R </first_frame>
            <second_frame>  T  L  N  P  *  K  P  Q  E  L  N  *  K  D  L  P  N  *  *  L  N  F  V  N  *  G  S  N  C  T  C  V  L  I  S  K  W  *  P  M  H  Y  L  N  N  F  K  R  V  F  Q  M  F  D  K  I  P  V  R  I  L  Q  D  F  D  P  I  E  H  M  F  V  C  T  I  L  H  D  F  C  F  V  F  I  C  *  C  R  N  G  G  T  G  *  S  *  A  R  G  F  A  *  N  S  T  P  G  R  V  L  L  Y  I  W  F  *  T  S  S  Q  Q  Q  R  *  G  F  F  Y  F  L  L  S  D  N  E  F  H  S  W  F  Y  L  I  K  K  F  Y  K  I  L  Q  *  Y  I  A  N  K  F  I  A  R  H  L  *  Q  I  T  L  L  E  Y  L  I  L  D  N  G  I  L  R :   I  *  N  *  T  R  I  T  M  L  R  V  S  F  A  L  V  E  Q  G  * :   *  L  I  L  Q  M  T  L  V  L  A  Y  T  S  T  H  L  C  L  A  T  T  R :   C  S  S  M  E  L  Y  G  C  M  T  *  F  K  T  Y  W  D  G  R  G  F  I  S  A  V  V  C  R  N  Q :   *  T  F  L  R  I  T  W  I  *  K  A  *  T  A  *  I  *  K  L  Q  L  L  L  L  F  S  F  C  H  L  N  S  R  R :   K  I  Y  M  P  K  S  V  A  S  H  I  Q  V  T  C  V  C  F  L  Q  R  T  K  I  R  *  I  *  H  L  S  G  F  K  F  *  N  F  V  A  L  T  V  P  H  G  S  I  N  L  Q  V  S  L  *  C  N  W  V  V  S  Q  F  Y  S  F  I  L  L  P  A  D  Q  *  I  S  V  N  L  H  L  I  S  T  K  Y  P  F  W  T  R  I  *  I  S  T  F  S  I  V  S  H  S  A  L  A  T  F  M  P  H  *  L  I  E  L  I  L  P  F  R  V  H  E  F  L  H  C  I  L  I  Q  V  N  K  I  V  Q  G  Q  F  H  L  F  E  E  M  Y  K  P  F  L  E  E  Y  E  A  K  N  L  L  R  F  S  V  A  G  D  K  Q  V  N  I  F  Q  :  D  C  G  L  S  A  A  S  T  L  V  S  S  L  P  S  S  I  R  S  E  M  A  M  K  L  G  E  K  R  I  L  D  D  S   : G  R  V  R  Q  Q  I  V  I  G  S  K  E  Q  A  A  E  C  M  Q  R  L  V  R  R  K  V  M  F  S  S  T  R  Q  A  V  A  G  L  L  T  A  G  A  V  H  G  V  R  Y  V  A  N  K  M  R  K  A  W  K  S  W  V  *  L  F  P  V  F  G  *  H  H  V  F  *  L  V  Q  T  W  G  Y  S  H  N  H  S  Y  T  *  *  H  A  V  Q  P  W  S  S  *  H  G  *  S  L  P  T  L  L  L  L  F  Q  N  K  T  N  R  I  *  G  G  K  *  P  T  T  H  Q  K  I  S  S  E  S  F  L  F  T  C  I  L  F  F  Y  L  F  Q  R  W  E  E  F  F  R  E  G  R  A  V  V  C  L  E  H  P  G  E  K  K  L  I  N  V  S  K  Q   </second_frame>
            <third_frame>   P  *  T  L  E  N  P  R  N  L  I  E  K  I  C  Q  I  D  S  *  I  L  L  I  R  V  Q  I  A  H  V  Y  *  S  V  S  G  N  Q  C  I  I  L  I  I  S  S  V  S  S  R  C  L  I  K  F  L  *  E  Y  F  K  I  L  I  Q  L  N  I  C  L  Y  V  P  Y  Y  M  I  F  V  L  F  S  Y  V  N  V  E  M  V  G  Q  D  K  A  E  L  G  G  L  L  E  I  L  P  P  V  E  F  C  C  I  Y  G  S  K  L  H  P  N  N  K  D  E  V  F  S  T  S  F  F  R  I  M  N  S  T  H  G  F  I  *  S  R  S  S  I  K  Y  C  N  S  T  L  L  T  N  S  L  L  D  I  Y  D  R  L  H  Y  W  S  I  *  S  S  T  M  A  F  *   : E  S  K  I  E  Q  G  S  L  C  F  V  S  H  S  P  W  W  S  K  D   : D  N  *  Y  C  K  *  H  W  C  W  R  T  L  Q  P  I  C  V  L  Q  Q  Q   : D  V  Q  V  W  S  C  T  D  A  *  L  D  S  R  H  I  G  M  G  E  V  L  S  Q  R  S  F  A  E  T   : S  E  H  S  Y  G  *  L  G  Y  K  K  R  E  Q  R  E  S  E  S  C  N  F  C  C  S  S  P  F  A  I  *  I  H  G   : G  R  F  I  C  Q  N  L  *  P  L  I  Y  R  *  L  A  Y  A  F  C  R  G  Q  K  *  G  R  F  D  I  *  V  G  L  N  F  K  I  L  W  P  *  L  Y  H  M  E  V  S  I  Y  K  *  V  Y  S  V  I  G  *  F  L  N  F  I  V  L  Y  Y  F  Q  R  I  N  E  Y  Q  L  I  C  I  S  Y  L  Q  N  I  L  F  G  L  E  F  E  S  Q  L  L  A  *  Y  L  I  V  H  W  Q  L  S  C  H  I  N  *  L  N  *  F  F  H  S  V  Y  M  N  F  F  I  A  Y  *  S  R  *  T  K  L  Y  K  D  S  S  I  Y  L  R  K  C  I  S  H  F  W  K  N  T  R  P  K  T  C  *  D  F  Q  *  L  V  I  S  K  *  T  Y  F  R :   I  V  D  Y  L  L  L  P  P  W  F  L  L  F  L  H  Q  S  E  V  R  W  P  *  N  L  E  K  R  E  F  W  M  T  L  :  V  E  L  D  N  K  *  *  L  V  Q  K  N  R  L  L  S  A  C  R  G  *  L  D  E  R  L  C  F  L  A  Q  G  R  L  L  Q  V  Y  *  L  L  V  L  F  M  E  S  D  M  *  Q  T  R  C  A  R  L  G  N  L  G  C  N  C  F  L  F  L  G  D  I  T  S  F  N  W  F  R  H  G  D  I  A  T  T  T  V  T  P  N  D  M  R  F  N  H  G  V  L  S  M  D  R  V  C  R  L  S  C  C  F  F  K  I  R  Q  I  E  F  E  G  G  N  N  Q  Q  P  I  K  K  F  L  L  K  V  F  C  S  L  V  F  F  S  F  I  Y  F  K  G  G  K  S  S  S  G  K  V  E  L  L  Y  V  *  N  I  L  V  K  R  S  *  S  M  F  L  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65536" stop="65592"/>
                    <exon start="65664" stop="65726"/>
                    <exon start="65845" stop="65913"/>
                    <exon start="65971" stop="66063"/>
                    <exon start="67476" stop="67580"/>
                    <exon start="67668" stop="67772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSMTDYIIGVSDPRQWHSENLKLNKDHYASCLIRLGGARMITDIANDIGVGVHFNPFVSCNNKMFKYGVVRMHDLIQDILGWERFYLSGRLQKPVNILTDNLDIKSVNSVNLKAATSAALLLLPSKFTEEDLYAKICSLSYTGDLRMLFAEDKNKVDLTFEWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68008" stop="68196"/>
                    <exon start="68846" stop="68951"/>
                    <exon start="69268" stop="69458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIELILPFRVHEFLHCILIQVNKIVQGQFHLFEEMYKPFLEEYEAKNLLRFSVAGDKQVNIFQDCGLSAASTLVSSLPSSIRSEMAMKLGEKRILDDSGRVRQQIVIGSKEQAAECMQRLVRRKVMFSSTRQAVAGLLTAGAVHGVRYVANKMRKAWKSWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65229" stop="65480"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFKILIQLNICLYVPYYMIFVLFSYVNVEMVGQDKAELGGLLEILPPVEFCCIYGSKLHPNNKDEVFSTSFFRIMNSTHGFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65009" e_stop="65426"/>
            <exon e_start="65536" e_stop="65592"/>
            <exon e_start="65664" e_stop="65726"/>
            <exon e_start="65845" e_stop="66012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.917" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.516" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65009" e_stop="65426" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.917" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65427" i_stop="65535" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65536" e_stop="65592" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.516">
            <gDNA_intron_boundary i_start="65593" i_stop="65663" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65664" e_stop="65726" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65727" i_stop="65844" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="65845" e_stop="66012" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65009" stop="65426"/>
              <exon start="65536" stop="65592"/>
              <exon start="65664" stop="65726"/>
              <exon start="65845" stop="66012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATCTGTTGCTTCTTCTTCTTCAATGGCAGTCTCAATCATCCCAACCTTAAACCCTTGAAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAG : ACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG : AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG : ATAACTGATATTGCAAATGACATTGGTGTTGGCGTACACTTCAACCCATTTGTGTCTTGCAACAACAAGGTAAATGAAGATGCACTTTCTTTTAACACATCAGTAATTTAAGATTAACTTTTACAGATGTTCAAGTATGGAGTTGTACGGATGCATGACTTGATTCAA</gDNA_template>
            <first_frame> G  S  V  A  S  S  S  S  M  A  V  S  I  I  P  T  L  N  P  *  K  P  Q  E  L  N  *  K  D  L  P  N  *  *  L  N  F  V  N  *  G  S  N  C  T  C  V  L  I  S  K  W  *  P  M  H  Y  L  N  N  F  K  R  V  F  Q  M  F  D  K  I  P  V  R  I  L  Q  D  F  D  P  I  E  H  M  F  V  C  T  I  L  H  D  F  C  F  V  F  I  C  *  C  R  N  G  G  T  G  *  S  *  A  R  G  F  A  *  N  S  T  P  G  R  V  L  L  Y  I  W  F  *  T  S  S  Q  Q  Q  R  *   : D  I  Y  D  R  L  H  Y  W  S  I  *  S  S  T  M  A  F  *   : E  S  K  I  E  Q  G  S  L  C  F  V  S  H  S  P  W  W  S  K  D   : D  N  *  Y  C  K  *  H  W  C  W  R  T  L  Q  P  I  C  V  L  Q  Q  Q  G  K  *  R  C  T  F  F  *  H  I  S  N  L  R  L  T  F  T  D  V  Q  V  W  S  C  T  D  A  *  L  D  S  </first_frame>
            <second_frame>  D  L  L  L  L  L  L  Q  W  Q  S  Q  S  S  Q  P  *  T  L  E  N  P  R  N  L  I  E  K  I  C  Q  I  D  S  *  I  L  L  I  R  V  Q  I  A  H  V  Y  *  S  V  S  G  N  Q  C  I  I  L  I  I  S  S  V  S  S  R  C  L  I  K  F  L  *  E  Y  F  K  I  L  I  Q  L  N  I  C  L  Y  V  P  Y  Y  M  I  F  V  L  F  S  Y  V  N  V  E  M  V  G  Q  D  K  A  E  L  G  G  L  L  E  I  L  P  P  V  E  F  C  C  I  Y  G  S  K  L  H  P  N  N  K  D  E  :  T  S  M  T  D  Y  I  I  G  V  S  D  P  R  Q  W  H  S  E  :  N  L  K  L  N  K  D  H  Y  A  S  C  L  I  R  L  G  G  A  R  M  :  I  T  D  I  A  N  D  I  G  V  G  V  H  F  N  P  F  V  S  C  N  N  K  V  N  E  D  A  L  S  F  N  T  S  V  I  *  D  *  L  L  Q  M  F  K  Y  G  V  V  R  M  H  D  L  I  Q </second_frame>
            <third_frame>   I  C  C  F  F  F  F  N  G  S  L  N  H  P  N  L  K  P  L  K  T  P  G  T  *  L  K  R  F  A  K  L  I  A  K  F  C  *  L  G  F  K  L  H  M  C  T  D  Q  *  V  V  T  N  A  L  S  *  *  F  Q  A  C  L  P  D  V  *  *  N  S  C  E  N  T  S  R  F  *  S  N  *  T  Y  V  C  M  Y  H  I  T  *  F  L  F  C  F  H  M  L  M  *  K  W  W  D  R  I  K  L  S  *  G  V  C  L  K  F  Y  P  R  *  S  F  A  V  Y  M  V  L  N  F  I  P  T  T  K  M  R :   H  L  *  Q  I  T  L  L  E  Y  L  I  L  D  N  G  I  L  R :   I  *  N  *  T  R  I  T  M  L  R  V  S  F  A  L  V  E  Q  G  * :   *  L  I  L  Q  M  T  L  V  L  A  Y  T  S  T  H  L  C  L  A  T  T  R  *  M  K  M  H  F  L  L  T  H  Q  *  F  K  I  N  F  Y  R  C  S  S  M  E  L  Y  G  C  M  T  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65229" stop="65426"/>
                    <exon start="65536" stop="65592"/>
                    <exon start="65664" stop="65726"/>
                    <exon start="65845" stop="65955"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFKILIQLNICLYVPYYMIFVLFSYVNVEMVGQDKAELGGLLEILPPVEFCCIYGSKLHPNNKDETSMTDYIIGVSDPRQWHSENLKLNKDHYASCLIRLGGARMITDIANDIGVGVHFNPFVSCNNKVNEDALSFNTSVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="78047" PGL_stop="77218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78047" e_stop="77218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="78047" e_stop="77218" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78047" stop="77218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATGAAATTAACTATCTAAGTCGAGAAAAAGAGAGCCCCACCCCTTCCGCTTCCGTTTTTCTGCCCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTTAAAGTTACCCTAAAACCCAACTTGGGTTCTTGTGAAACTGAAGTGGAAGTACCAATTTCAGACAAGCTATTTAAAGAGGCTCCAAAGTTGGGTTCTTTCAAATTGGGTGATTCTACATTCTATTCTCTTATTGAGAAGTATGCTAATTCCGAGGACTTTACGTCTTTGGAGAAGGTTTTTGGTAGAATGAAGTGTGAAAAAAGAGTCTTTATTGAGAAGAGTTTTATCTTAGTGTTTAGAGCTTATGGAAAAGCCCGTTTGCCTGAAAAAGCTGTTGAGTTGTTTGAAAGA</gDNA_template>
            <first_frame> I  *  N  *  L  S  K  S  R  K  R  E  P  H  P  F  R  F  R  F  S  A  L  L  P  L  P  S  S  L  F  S  S  S  S  S  A  S  L  R  D  L  L  H  F  V  E  P  K  R  F  L  Y  L  R  F  K  P  C  I  D  D  H  Y  Q  K  F  L  F  F  F  M  R  I  *  V  E  K  A  C  S  F  T  P  S  V  P  N  S  S  L  Q  S  *  S  H  V  S  L  S  L  T  S  P  L  T  V  Y  S  Q  L  Y  L  T  L  L  I  L  T  K  N  L  K  *  T  I  Q  F  L  L  *  K  L  K  W  D  Y  P  N  *  V  L  V  E  L  K  W  K  Y  P  Y  L  I  T  Q  *  R  L  P  Q  Y  L  S  L  I  L  V  *  L  K  *  K  N  P  F  L  I  N  H  L  K  L  P  *  N  P  T  W  V  L  V  K  L  K  W  K  Y  Q  F  Q  T  S  Y  L  K  R  L  Q  S  W  V  L  S  N  W  V  I  L  H  S  I  L  L  L  R  S  M  L  I  P  R  T  L  R  L  W  R  R  F  L  V  E  *  S  V  K  K  E  S  L  L  R  R  V  L  S  *  C  L  E  L  M  E  K  P  V  C  L  K  K  L  L  S  C  L  K   </first_frame>
            <second_frame>  Y  E  I  N  Y  L  S  R  E  K  E  S  P  T  P  S  A  S  V  F  L  P  Y  S  R  Y  P  P  R  C  F  H  L  P  H  Q  R  L  S  E  T  S  F  I  L  L  S  L  K  D  S  Y  I  *  G  L  N  P  A  *  M  I  I  I  R  S  F  C  F  S  S  *  E  S  E  L  K  R  H  A  L  L  L  L  P  Y  Q  T  V  H  F  K  A  N  P  M  *  V  F  L  *  L  H  H  *  P  C  I  L  S  S  I  *  P  F  S  Y  *  P  R  T  *  N  R  L  F  N  F  Y  F  E  N  *  N  G  T  T  Q  I  E  F  L  W  N  *  N  G  N  T  H  I  *  *  L  N  E  D  C  P  N  T  *  V  *  F  L  C  N  *  S  R  R  T  P  F  *  *  I  I  *  S  Y  P  K  T  Q  L  G  F  L  *  N  *  S  G  S  T  N  F  R  Q  A  I  *  R  G  S  K  V  G  F  F  Q  I  G  *  F  Y  I  L  F  S  Y  *  E  V  C  *  F  R  G  L  Y  V  F  G  E  G  F  W  *  N  E  V  *  K  K  S  L  Y  *  E  E  F  Y  L  S  V  *  S  L  W  K  S  P  F  A  *  K  S  C  *  V  V  *  K  </second_frame>
            <third_frame>   M  K  L  T  I  *  V  E  K  K  R  A  P  P  L  P  L  P  F  F  C  P  T  P  A  T  L  L  A  V  F  I  F  L  I  S  V  S  Q  R  P  P  S  F  C  *  A  *  K  I  L  I  F  K  V  *  T  L  H  R  *  S  L  S  E  V  F  V  F  L  H  E  N  L  S  *  K  G  M  L  F  Y  S  F  R  T  K  Q  F  T  S  K  L  I  P  C  K  S  F  S  N  F  T  I  N  R  V  F  S  A  L  S  N  P  S  H  T  D  Q  E  P  E  I  D  Y  S  I  S  T  L  K  T  E  M  G  L  P  K  L  S  S  C  G  T  E  M  E  I  P  I  S  D  N  S  M  K  I  A  P  I  P  K  F  N  S  C  V  T  E  V  E  E  P  L  S  D  K  S  F  K  V  T  L  K  P  N  L  G  S  C  E  T  E  V  E  V  P  I  S  D  K  L  F  K  E  A  P  K  L  G  S  F  K  L  G  D  S  T  F  Y  S  L  I  E  K  Y  A  N  S  E  D  F  T  S  L  E  K  V  F  G  R  M  K  C  E  K  R  V  F  I  E  K  S  F  I  L  V  F  R  A  Y  G  K  A  R  L  P  E  K  A  V  E  L  F  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77817" stop="77218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGMLFYSFRTKQFTSKLIPCKSFSNFTINRVFSALSNPSHTDQEPEIDYSISTLKTEMGLPKLSSCGTEMEIPISDNSMKIAPIPKFNSCVTEVEEPLSDKSFKVTLKPNLGSCETEVEVPISDKLFKEAPKLGSFKLGDSTFYSLIEKYANSEDFTSLEKVFGRMKCEKRVFIEKSFILVFRAYGKARLPEKAVELFER</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0021D12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78035" stop="77823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSKSRKREPHPFRFRFSALLPLPSSLFSSSSSASLRDLLHFVEPKRFLYLRFKPCIDDHYQKFLFFFMRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 21600 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2160 bytes was the average size of a spliced alignment
$ 13152 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1878 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 35 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:21:42
-->
