<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:20:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350311" ref_strand="-" ref_description="SGN-E350311 [cTOS-5-E11]">
      <seq>ttcatcagttacatcaagacatgacntgctttcctcaaagggttcacatcaatatgaagagtggcattcagatctgctgggctgctgttcagaacctctcttatgtattaaaacccttttctttccttgtggtacattttctagaattgccagtgttgctgcggacaggcatatatcttcagcggatgcttgtaatgaattaatggcttattccttgatactgtcctgctgttgttacacatgttgcatcagaaagaagcttcggaaaaagctaaacatcaagggaggttgtgttgatgattttctttctcatttgatgtgctgttgctgtgctcttgtccaagaattgcgcgaagtcaagatacgtgggacacatggtatagagaagacgaaaataagccctccaaccactcaattcatggaatcctaggaagctaaacctggcttttttagcacaaaatatcagaaagcactatatggaggttcggtgtgtataattgacccagagttgttcattcgtttacatggttactggtgactatacatgtatgtgatgtaagaatctgttctatgtggtgtacatgcaggaatattatggtgtaactatggatgaatatcatgacgtattttttgtgaaaataaaagataacaactactaggttgttgcagttccaacaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="11144" stop="8608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10844" g_stop="10741" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10740" i_stop="10552" i_length="189">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10551" g_stop="10480" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="176" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10479" i_stop="9792" i_length="688">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9791" g_stop="9685" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="283" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9684" i_stop="9584" i_length="101">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9583" g_stop="9490" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="377" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9489" i_stop="9294" i_length="196">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9293" g_stop="9189" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="482" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9188" i_stop="9101" i_length="88">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9100" g_stop="8909" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="674" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="694"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E350311" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10844" e_stop="10741"/>
          <exon e_start="10551" e_stop="10480"/>
          <exon e_start="9791" e_stop="9685"/>
          <exon e_start="9583" e_stop="9490"/>
          <exon e_start="9293" e_stop="9189"/>
          <exon e_start="9100" e_stop="8909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTATGTATGTTCCAGAATAATGTTCTATATTCTCCATACCATGTATCTTGTGATGTTTAATTGCCATTATGCTAAAGTACAATGTTTGGATGCTTGAAAGGGTTTGATAACTAACATCATCATTTTGGGCCGATATCATCATATTAGGTGCAATATCAAGATAATCCTAGTTAATGCCGGATTTACTATGCAGGTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATATGTAAGTGGCTTTATATTCCATTTGAAATTTTTTTGTTTATTATTGCTCTAGTTGTGAGTAACTTGGGGTGAAAACTGAGCCATCCTTTTTGTAATTATTAATCTTCTTTCTCTTTGTTAATCAATGATGGAACTTGTTCAATTAATAACTCTTGTCATTTTTGTTGGGTTTCTTTGTCTAGAAGTTTGCGGTTAAATCTTAGCATTACACTCTACTGTACAGTCAGATATATCAACTTTATGTTTCCTTGGTTGACTTTCTGATCATTGTTAATTTATCAGAACTATGTATAGCAGCCTTGTCAACTATTTCAACTTTAGGAACTATATGAACTGGTTCATTTAAGTTCAATTTAAAAAGTCACTGGACCCATCAAAAGTTGGTCAAAAGCTCTTTTTCAACTAGCATTACATTGATTATGCAAGAAAAAGAACTACACGGCCATCATTATGTCTTTTAAGTTGAATCACCATAAAATGTTGAACTTTAAATTGAATTTTCAGCGTTATAATTCAAATTCTGTGGGGCATAATCAGATATATTATAGCAATCTTCTTTAATTGAAAATTCAAGAGCTGTTTCCTTGGCTTTTGTATCAACTGCTGTAGTTCTGCTTGGTTTTTTCAGTTTATTCCTTTTTATACATTGAAGCTAACCAAAAAAACACTTTTGAATGTGTGAGATGCAGCTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAGGTAAGGAGAAAAAGTTTTTTAAAAAATAAGTACCTGATCATACATGCTGTGTCAACTCATGTGCACTGGTGGTTTTCTTTTTCTTTTCTTTTCTTTTTCAGGGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATGGTATATGCTTCACAGGAAAATTCCACTCCCTATTTCACATGTTTATGATACTTTTTTTTGTGTTAACAAGATTTGGCTGGGAATTGCATAGTAATTTCTTAACTTGGCTTTTAGCAGATGTGGATTCCTAGTCTGACTTCCTTGTGATTGTATTAAGTTCATTTTTAATATAGTGATTCACCCATCAATGATGCAGGTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAGGTACTGTTTGTCGCTATTGTTACTTGATAAGTGAGTTCCTTTGTGTGTTTAAATCTTGTATGCAATAATGTTATTCTTTGATGCGCAGGTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCA</genome_strand>
        <mrna_strand>TTCATCAGTTACATCAAGACATGACNTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT.............................................................................................................................................................................................GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG.....................................................................................................GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG....................................................................................................................................................................................................GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG........................................................................................GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350475" ref_strand="+" ref_description="SGN-E350475 [cTOS-5-C3]">
      <seq>ttaacgaagaatctttcctgttcttacccaagagtgcctatcaatgaggcaattcaaaaagaaaatgagaaactccaactagaactacagcgctcgcaagctaatttagatgtaggtcagtgtgaattcattcagcatcttctggatgtcacagaagtagttgccaataactctctatcattgaagagttcacctgccaaacctctcaaaaagttggatcagagttactcgaatgttgatactgagaaggtatattatgacgattatgctaaaagtgatgagaaacagacaacttcaagaaacacttcatcagttacatcaagacatgacctgctttcctcaaagggttcacatcaatatgaagagtggcattcagatctgctgggctgctgttcagaacctctcttatgtattaaaacccttttctttccttgtggtacattttctagaattgccagtgttgctgcggacaggcatatatcttcagcggatgcttgtaatgaattaatggcttattccttgatactgtcctgctgttgntacacatgttgcatcagaaagaagcttcggaaaaagctaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="11582" stop="9389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11282" g_stop="10984" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10983" i_stop="10851" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10850" g_stop="10741" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="409" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10740" i_stop="10552" i_length="189">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10551" g_stop="10480" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="481" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10479" i_stop="9792" i_length="688">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9791" g_stop="9689" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="584" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E350475" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11282" e_stop="10984"/>
          <exon e_start="10850" e_stop="10741"/>
          <exon e_start="10551" e_stop="10480"/>
          <exon e_start="9791" e_stop="9689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAGGTAAGTTGCTTAAGTATAGTAGCTTAACTGTAATTTTCTGTTGGAAGCTGTAGTATCTCTTAAATTAAGTGTGAGGCTAGGGTCCATAGCCTATTTTCAACAGATTCTTTTAAATGCTTAAAAATATTTACAGAAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTATGTATGTTCCAGAATAATGTTCTATATTCTCCATACCATGTATCTTGTGATGTTTAATTGCCATTATGCTAAAGTACAATGTTTGGATGCTTGAAAGGGTTTGATAACTAACATCATCATTTTGGGCCGATATCATCATATTAGGTGCAATATCAAGATAATCCTAGTTAATGCCGGATTTACTATGCAGGTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATATGTAAGTGGCTTTATATTCCATTTGAAATTTTTTTGTTTATTATTGCTCTAGTTGTGAGTAACTTGGGGTGAAAACTGAGCCATCCTTTTTGTAATTATTAATCTTCTTTCTCTTTGTTAATCAATGATGGAACTTGTTCAATTAATAACTCTTGTCATTTTTGTTGGGTTTCTTTGTCTAGAAGTTTGCGGTTAAATCTTAGCATTACACTCTACTGTACAGTCAGATATATCAACTTTATGTTTCCTTGGTTGACTTTCTGATCATTGTTAATTTATCAGAACTATGTATAGCAGCCTTGTCAACTATTTCAACTTTAGGAACTATATGAACTGGTTCATTTAAGTTCAATTTAAAAAGTCACTGGACCCATCAAAAGTTGGTCAAAAGCTCTTTTTCAACTAGCATTACATTGATTATGCAAGAAAAAGAACTACACGGCCATCATTATGTCTTTTAAGTTGAATCACCATAAAATGTTGAACTTTAAATTGAATTTTCAGCGTTATAATTCAAATTCTGTGGGGCATAATCAGATATATTATAGCAATCTTCTTTAATTGAAAATTCAAGAGCTGTTTCCTTGGCTTTTGTATCAACTGCTGTAGTTCTGCTTGGTTTTTTCAGTTTATTCCTTTTTATACATTGAAGCTAACCAAAAAAACACTTTTGAATGTGTGAGATGCAGCTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACAT</genome_strand>
        <mrna_strand>TTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG.....................................................................................................................................AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT.............................................................................................................................................................................................GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGNTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228224" ref_strand="+" ref_description="SGN-E228224 [cLED-2-D17]">
      <seq>tgtataccagtttcgtagggctcagaacgagattgaccaatacttgaagattattcctcttatcactctggttgataatgctcgagtcagggaaaggttggaatatattgaaatggaccagcgtgaatacacactggaggttgaagacatgaaggtgcaagaagtgattatgaaaccagagccttctaaagatgatacaataatattaacgaagaatctttcctgttcttacccaagagtgcctatcaatgaggcaattcaaaaagaaaatgagaaactccaactagaactacagcgctcgcaagctaatttagatgtaggtcagtgtgaattcattcagcatcttctggatgtcacagaagtagttgccaataactctctatcattgaagagttcacctgccaaacctctcaaaaagttggatcagagttactcgaatgttgatactgagaaggtatattatgacgattatgctaaaagtgatgagaaacagacaacttcaagaaacacttcatcagttacatcaagacatgacctgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="13669" stop="10512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13369" g_stop="13279" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13278" i_stop="11397" i_length="1882">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11396" g_stop="10984" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="504" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10983" i_stop="10851" i_length="133">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10850" g_stop="10812" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="543" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E228224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13369" e_stop="13279"/>
          <exon e_start="11396" e_stop="10984"/>
          <exon e_start="10850" e_stop="10812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGGGTATGGAGACTTTGCTCTTTTTGTCCATAGTGTTTTCCCTTCAGCTTTATATGTGTTCATTATCGGTTTGTTTCATTGCTCTTTCATCTAAAGATCTATCTTTGTTCTTTCTCATTTTCACTAATGACATGGTAAGGAACTAAGGATATATTCCGAGTTTGATAACTGCAAATCTTGGTTAAGTAGCCGTACTGGATGTCTGTTTGATACCTTTGTTATGAGCTATGATATGAGATTTTAATCCTGCAAACCTTTCACCCATTTTATATCATCAGAGAGTACTTGATTGGTTAATTGCTATTCAACATTTCTTTTATGGTACTGAGGAAAAATAGAGACAGATTTGGCATTTGATCCCCGTTTCTTTGCTTCGCCAAAGCCATCATAACATGAATATGTTTGTATCAGGGAACAAATAACAATAAACCAACAATAGTGGCACTAAATCCCATAGTTTATTCTTTATAGCTGTCAAGGGGAAACCACAAAGTGGGATCAACTAATATACAATAGCTTCTAATACAAATATTTGGTTTGAGCAAATTAGAGATCTATATATGATAAATAGTCCATTTTACTAAACTTATCAGGTATGTCACGTGTTTGAGATTTTAGGATGGTGTAAAGACAATTGAGGAAACAACTATGAGACAACTATATTCTGTACAGTTTTCTAATACATTTTGCTTCCTGCAAAATAGAGCTATTTGATGAGTAGTTCATTTTCCACAAGATTATCAGGTGGGTCATGTTAAAGAGTGTCAAAAGTCCCACATTGGTGGTTAATGATATGGGTGGACTCCTTATAAGGTTAGGTTTGGATTATCCTCCTTCATTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCCAAGACCTAATTTTACATGGTATTTGATGTCAAAAGTCTCACATTGGTGGTTAGTGGTTAATGAGATGAGTAGACTCAGGCTTGGACAATCCGTGTCAAACTGCAGCACCTCAGAACTCATGAGCGGTTCAATGTGTGTATGCGTGTGGGATCATTGCCTCAAAAACTGATTTGTCTCCAATACTTGTTGGATTAACTAATCATCCATCAATGGCTCCAAGACATTTATGTTTCTCTCTCCCTGCACTATAACTTTGATTCTCTTATCTCCACTTTTTCTCAAATGCACAACAAATAATGAGCATAGTTGAAGGCATTCTTTTAACAGCCATTAGCTCTTTTCATTACTATGGAAAGCTGGCTGTTTCGTAATTCTCTATATGGACAAGTTATCTTTTGTCAGAATATAGATGAGAGAAGGCCCATGCACTTCTGGAAAGTGAAGCTACTATGAGTCTATCTTATTTTATTTTTATAATGGTGGTGTCTAGACTAGCTTGAATTAGGTACATGCTACCTCCCACCAGCGCGCACTTCTATCTGGCTACTCTTCTCACCTAGGATTAGGCTGTTGGCAAGCAATCACCTAGAGTTTTTTTGTCTTCGACAGGATCTGAACCCTCGTATCCAAGGTTTACGCTTGCTTCATTAATAACTTGGCAACATCCTAAAACCTTGTCTATTTTGAGTCTATTACAATGAAGAAGGGGCAGCTGTGTTGTTTAAATATTTCAATCATCTAGGTAGAATCTTTTTCCTCTTAAAGTGAAAGCTTCTTATCATGTTTAAGTTAGAGAAAATTGCACTGGTAATAAGACAGTCCATCTGTCACAATAAGAACAACCTGTTACTTTACCTAATATTCTTATTCTTCTAATGCCAACTCTAGCATGTTTAAGCTTTTTTTGACTGCAGTTACTCACAATTGGAAAGTGTTTTTACATGCATACATTTGGTGTTCACAATAACCTATTATCTTCCAAGTTGACAGATCTTGCTTTCCATATGTTGACAGGAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAGGTAAGTTGCTTAAGTATAGTAGCTTAACTGTAATTTTCTGTTGGAAGCTGTAGTATCTCTTAAATTAAGTGTGAGGCTAGGGTCCATAGCCTATTTTCAACAGATTCTTTTAAATGCTTAAAAATATTTACAGAAACACTTCATCAGTTACATCAAGACATGACCTGCTTTC</genome_strand>
        <mrna_strand>TGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG.....................................................................................................................................AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224852" ref_strand="+" ref_description="SGN-E224852 [cLEL-27-P1](-)">
      <seq>tatccggaaacccgagagccattggaacatcttgaagatgcattgaggaggtcttatttattggtcaacagctgtcaggacaggagctacctttatctgttggctatggggtggaacattgtataccagtttcgtagggctcagaacgagattgaccaatacttgaagattattcctcttatcactctggttgataatgctcgagtcagggaaaggttggaatatattgaaatggaccagcgtgaatacacactggagggtgaagacattgaaggtgcaagaagtgattatgaaaccagagccttctaaagatgatacaataatattaacgaagaatctttcctgttcttacccaagagtgcctaacaatgaggcaattcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="13788" stop="10923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13488" g_stop="13279" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13278" i_stop="11397" i_length="1882">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11396" g_stop="11222" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="386" r_length="176" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E224852" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13488" e_stop="13279"/>
          <exon e_start="11396" e_stop="11222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGGGTATGGAGACTTTGCTCTTTTTGTCCATAGTGTTTTCCCTTCAGCTTTATATGTGTTCATTATCGGTTTGTTTCATTGCTCTTTCATCTAAAGATCTATCTTTGTTCTTTCTCATTTTCACTAATGACATGGTAAGGAACTAAGGATATATTCCGAGTTTGATAACTGCAAATCTTGGTTAAGTAGCCGTACTGGATGTCTGTTTGATACCTTTGTTATGAGCTATGATATGAGATTTTAATCCTGCAAACCTTTCACCCATTTTATATCATCAGAGAGTACTTGATTGGTTAATTGCTATTCAACATTTCTTTTATGGTACTGAGGAAAAATAGAGACAGATTTGGCATTTGATCCCCGTTTCTTTGCTTCGCCAAAGCCATCATAACATGAATATGTTTGTATCAGGGAACAAATAACAATAAACCAACAATAGTGGCACTAAATCCCATAGTTTATTCTTTATAGCTGTCAAGGGGAAACCACAAAGTGGGATCAACTAATATACAATAGCTTCTAATACAAATATTTGGTTTGAGCAAATTAGAGATCTATATATGATAAATAGTCCATTTTACTAAACTTATCAGGTATGTCACGTGTTTGAGATTTTAGGATGGTGTAAAGACAATTGAGGAAACAACTATGAGACAACTATATTCTGTACAGTTTTCTAATACATTTTGCTTCCTGCAAAATAGAGCTATTTGATGAGTAGTTCATTTTCCACAAGATTATCAGGTGGGTCATGTTAAAGAGTGTCAAAAGTCCCACATTGGTGGTTAATGATATGGGTGGACTCCTTATAAGGTTAGGTTTGGATTATCCTCCTTCATTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCCAAGACCTAATTTTACATGGTATTTGATGTCAAAAGTCTCACATTGGTGGTTAGTGGTTAATGAGATGAGTAGACTCAGGCTTGGACAATCCGTGTCAAACTGCAGCACCTCAGAACTCATGAGCGGTTCAATGTGTGTATGCGTGTGGGATCATTGCCTCAAAAACTGATTTGTCTCCAATACTTGTTGGATTAACTAATCATCCATCAATGGCTCCAAGACATTTATGTTTCTCTCTCCCTGCACTATAACTTTGATTCTCTTATCTCCACTTTTTCTCAAATGCACAACAAATAATGAGCATAGTTGAAGGCATTCTTTTAACAGCCATTAGCTCTTTTCATTACTATGGAAAGCTGGCTGTTTCGTAATTCTCTATATGGACAAGTTATCTTTTGTCAGAATATAGATGAGAGAAGGCCCATGCACTTCTGGAAAGTGAAGCTACTATGAGTCTATCTTATTTTATTTTTATAATGGTGGTGTCTAGACTAGCTTGAATTAGGTACATGCTACCTCCCACCAGCGCGCACTTCTATCTGGCTACTCTTCTCACCTAGGATTAGGCTGTTGGCAAGCAATCACCTAGAGTTTTTTTGTCTTCGACAGGATCTGAACCCTCGTATCCAAGGTTTACGCTTGCTTCATTAATAACTTGGCAACATCCTAAAACCTTGTCTATTTTGAGTCTATTACAATGAAGAAGGGGCAGCTGTGTTGTTTAAATATTTCAATCATCTAGGTAGAATCTTTTTCCTCTTAAAGTGAAAGCTTCTTATCATGTTTAAGTTAGAGAAAATTGCACTGGTAATAAGACAGTCCATCTGTCACAATAAGAACAACCTGTTACTTTACCTAATATTCTTATTCTTCTAATGCCAACTCTAGCATGTTTAAGCTTTTTTTGACTGCAGTTACTCACAATTGGAAAGTGTTTTTACATGCATACATTTGGTGTTCACAATAACCTATTATCTTCCAAGTTGACAGATCTTGCTTTCCATATGTTGACAGGAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACA-TGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAG</genome_strand>
        <mrna_strand>TATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGGTGAAGACATTGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTAACAATGAGGCAATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224496" ref_strand="+" ref_description="SGN-E224496 [cLEL-27-P1](-)">
      <seq>agattgaccaatacttgaagattattcctcttatcactctggttgataatgctcgagtcagggaaaggttggaatatattgaaatggaccagcgtgaatacacactggaggttgaagacatgaaggtgcaagaagtgattatgaaaccagagccttctaaagatgatacaataatattaacgaagaatctttcctgttcttacccaagagtgcctatcaatgaggcaattcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="13640" stop="10923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13340" g_stop="13279" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13278" i_stop="11397" i_length="1882">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11396" g_stop="11222" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="237" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E224496" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13340" e_stop="13279"/>
          <exon e_start="11396" e_stop="11222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGGGTATGGAGACTTTGCTCTTTTTGTCCATAGTGTTTTCCCTTCAGCTTTATATGTGTTCATTATCGGTTTGTTTCATTGCTCTTTCATCTAAAGATCTATCTTTGTTCTTTCTCATTTTCACTAATGACATGGTAAGGAACTAAGGATATATTCCGAGTTTGATAACTGCAAATCTTGGTTAAGTAGCCGTACTGGATGTCTGTTTGATACCTTTGTTATGAGCTATGATATGAGATTTTAATCCTGCAAACCTTTCACCCATTTTATATCATCAGAGAGTACTTGATTGGTTAATTGCTATTCAACATTTCTTTTATGGTACTGAGGAAAAATAGAGACAGATTTGGCATTTGATCCCCGTTTCTTTGCTTCGCCAAAGCCATCATAACATGAATATGTTTGTATCAGGGAACAAATAACAATAAACCAACAATAGTGGCACTAAATCCCATAGTTTATTCTTTATAGCTGTCAAGGGGAAACCACAAAGTGGGATCAACTAATATACAATAGCTTCTAATACAAATATTTGGTTTGAGCAAATTAGAGATCTATATATGATAAATAGTCCATTTTACTAAACTTATCAGGTATGTCACGTGTTTGAGATTTTAGGATGGTGTAAAGACAATTGAGGAAACAACTATGAGACAACTATATTCTGTACAGTTTTCTAATACATTTTGCTTCCTGCAAAATAGAGCTATTTGATGAGTAGTTCATTTTCCACAAGATTATCAGGTGGGTCATGTTAAAGAGTGTCAAAAGTCCCACATTGGTGGTTAATGATATGGGTGGACTCCTTATAAGGTTAGGTTTGGATTATCCTCCTTCATTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCCAAGACCTAATTTTACATGGTATTTGATGTCAAAAGTCTCACATTGGTGGTTAGTGGTTAATGAGATGAGTAGACTCAGGCTTGGACAATCCGTGTCAAACTGCAGCACCTCAGAACTCATGAGCGGTTCAATGTGTGTATGCGTGTGGGATCATTGCCTCAAAAACTGATTTGTCTCCAATACTTGTTGGATTAACTAATCATCCATCAATGGCTCCAAGACATTTATGTTTCTCTCTCCCTGCACTATAACTTTGATTCTCTTATCTCCACTTTTTCTCAAATGCACAACAAATAATGAGCATAGTTGAAGGCATTCTTTTAACAGCCATTAGCTCTTTTCATTACTATGGAAAGCTGGCTGTTTCGTAATTCTCTATATGGACAAGTTATCTTTTGTCAGAATATAGATGAGAGAAGGCCCATGCACTTCTGGAAAGTGAAGCTACTATGAGTCTATCTTATTTTATTTTTATAATGGTGGTGTCTAGACTAGCTTGAATTAGGTACATGCTACCTCCCACCAGCGCGCACTTCTATCTGGCTACTCTTCTCACCTAGGATTAGGCTGTTGGCAAGCAATCACCTAGAGTTTTTTTGTCTTCGACAGGATCTGAACCCTCGTATCCAAGGTTTACGCTTGCTTCATTAATAACTTGGCAACATCCTAAAACCTTGTCTATTTTGAGTCTATTACAATGAAGAAGGGGCAGCTGTGTTGTTTAAATATTTCAATCATCTAGGTAGAATCTTTTTCCTCTTAAAGTGAAAGCTTCTTATCATGTTTAAGTTAGAGAAAATTGCACTGGTAATAAGACAGTCCATCTGTCACAATAAGAACAACCTGTTACTTTACCTAATATTCTTATTCTTCTAATGCCAACTCTAGCATGTTTAAGCTTTTTTTGACTGCAGTTACTCACAATTGGAAAGTGTTTTTACATGCATACATTTGGTGTTCACAATAACCTATTATCTTCCAAGTTGACAGATCTTGCTTTCCATATGTTGACAGGAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAG</genome_strand>
        <mrna_strand>AGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="24199" stop="25094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24499" g_stop="24820" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24499" e_stop="24820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="24199" stop="25094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24499" g_stop="24804" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24499" e_stop="24804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="24200" stop="25245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24500" g_stop="24945" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24500" e_stop="24945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGACGAGCAAGAATGGAGAGTGGTGAGCGAGATTTT-GGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTGGATTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262548" ref_strand="+" ref_description="SGN-E262548 [cLEG-63-C6]">
      <seq>ttcgaactatgctgctttaagtgcagaagttttacctgagttcttccaggttgaagctttcgcaaaacttaatagtgccataggcaaggtgatagaggctcaagaagacatgcctattgccggagtggtgacattgtattcatcccttttgacattttctcttcatgtccaccctgatcgccttgattatgtagatcagattctgggtgcatgtgtacagaaactttctggaaaaggaaagctcaaagacaacaaagcaacaaaacagatagtggccctactaagtgctcctctggagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggagaatcttgacgattcaactagtaaagagatggctaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="35631" stop="37623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35931" g_stop="35958" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35959" i_stop="36034" i_length="76">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36035" g_stop="36094" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="88" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36095" i_stop="36748" i_length="654">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36749" g_stop="36865" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="205" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36866" i_stop="37133" i_length="268">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37134" g_stop="37323" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="395" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E262548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35931" e_stop="35958"/>
          <exon e_start="36035" e_stop="36094"/>
          <exon e_start="36749" e_stop="36865"/>
          <exon e_start="37134" e_stop="37323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAACTATGCTGCTTTAAGTGCAGAAGTTAGTTACAAATTCAAACTTCTCTGGAATAAGAAATTTTTATGCCTTCCGGTTTCTGAATAATTTTTTCCTGCAGGTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAGGTAATTGAGATTAATATTCTTAAATATATTAAAACTGCTATATGGGTTCTGGAATGCTTTGAGAAGAAACTTTTTTTGTATCGTGGATTTTCTACCTCCACCTTATAGAAATTAGTGGATATTGCTTGAAGTTTAAGAATTTTAATAAGAGATACTTACTGACCAGCAACCATTGCATTCTCCCTTGTAGGAGATTCAGATAAATCTATGAAACAAGTATTTTCATAGCTTCGTAGCAGAAAGTTTCATTCAGAAAGATTATTGTTTGTCACGGTAAAGATTGATCATACTTTATTCATGACCAGATGATTTCTGATCTGTTCTCCATTTGGGATATTTGACCAGAAAGTGTTCCAAGACATTCTTGATTGTTTCATCTTTGCTTGAATAAAGAACAATACTGTTGCTTTCTGAAGGAATTATCTGGTTCTCATAAAACAAAAACTTAACATAAAGGCTGTTTGAAGTGCACAGTAAACCGATTCTTAAATCATATTAAATTACAGAATTGTTTTCCAAAGAAAAAAAAACTGAACTACACGACTTTGAAGTCATTGTACCAAGGTTTTTCCTACTGATCGTAATGAACTTTAGCTATGTATTTCTTTGATTATGATGATGCGCTCCATTATGCCTGTCTCTCTGTTGGTGCAGGTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTGGTAGGTTTCTCTCTTTCTCAATAACTAGTTGCTATAGGCTCTATGGTTTTACTTTTTGTGTTTTCCAAGTAAGTGTATCACACTTATTAGTCTGATGCTTTTTTTTGGATCCAAAGTGAATATGTGAAATTTATAATACGGTACACTAAAACAAGATATGTTGAAGTTGAAACTTTTCATCCTTTGAAATCTATGTCTATTTAGACGATTTTCTGGCCTGCCTGGTTCATGTGGAACCTGTAAAGATCACACTCTTATTCACTTGCAGGGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTT</genome_strand>
        <mrna_strand>TTCGAACTATGCTGCTTTAAGTGCAGAA............................................................................GTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTG............................................................................................................................................................................................................................................................................GGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370145" ref_strand="+" ref_description="SGN-E370145 [TUS-28-A6]">
      <seq>aaactttctggaaaaggaaagctcaaagacaacaaagcaacaaaacagatagtggccctactaagtgctcctctggagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggagaatcttgacgattcaactagtaaagagatggctaatgttttagtacaaaatattttgaaaaataagacttgcatttcaactgctgaaaaggttgaggcactttttgagttaatgaaagcactaattcgagatttggatgagggtgttgatgatgagcttgatgaagatgatttccaggaagagcagaattctgttgcgcagcttattcaaatgcttcacaatgatgatcctgaagagatgctgaagattatttgtgctgtgaagaagcacattttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaaattcggactccaaagcacaggtgactgcaatacacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="36849" stop="40030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37149" g_stop="37373" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37374" i_stop="37456" i_length="83">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37457" g_stop="37522" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="291" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37523" i_stop="37642" i_length="120">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37643" g_stop="37732" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="381" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37733" i_stop="38638" i_length="906">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38639" g_stop="38728" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="471" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38729" i_stop="38999" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39000" g_stop="39089" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="561" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39090" i_stop="39360" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39361" g_stop="39429" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="630" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39430" i_stop="39508" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39509" g_stop="39589" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="711" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39590" i_stop="39697" i_length="108">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39698" g_stop="39730" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="744" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E370145" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37149" e_stop="37373"/>
          <exon e_start="37457" e_stop="37522"/>
          <exon e_start="37643" e_stop="37732"/>
          <exon e_start="38639" e_stop="38728"/>
          <exon e_start="39000" e_stop="39089"/>
          <exon e_start="39361" e_stop="39429"/>
          <exon e_start="39509" e_stop="39589"/>
          <exon e_start="39698" e_stop="39730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAGGTTTGATTCTAGATAATTTTGTGTACTTCAATTTATTGCTTACAAATGTTACCCATGTTTCTACGAATTACTGGTCTTATCAGGTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAGGTGGACTGGAAACTCTGTGCTTGCATAAAAGTTCCTTAGTTCTTTCTTATATTTTCCTTTCATCACATATTTAAAATTAGTTTGTGCTGTGCCTTAAATTCTTTATCCTCCAATTTTCAGCTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAGGTAATTATGATTTACTTTCTTTTGAATTACTTGTATACTCCTTTTATGGATTAATTACTAGCTCTTGCAAGAGAAGACAGTAATATTCCCTATTACCCTCTGAGTTTATCAGAGAGATAAATAGGAATGAGCTCTTGAGTTTTGACATTAGTTGCAACTTGTATGTGATGAATTGGATGTATGTATAATGATCTACTGTAGTGTTAAGTTTTCACTTTATTGTGAAGGAGGAAAAACAAAATAAGAAAATGATGAAAAGTCACTGCCAACACTAGGGAAGAACTTTAAGCTGATCATGATTTGCTAGTCTTATCTTTTCATTTGGGGGATAATTTTACAGAAATTAGAAAGAAAAAAGACGTCAAACACATAATAGTCTTGACTATGTGTCCCCGATTAGTCTGTATAGTAAACATATAAAAGTAAGTATAAAAAATAATTAAATAACAACATTGGCATTTCCATTTGATTAAAATTTCAAGGTAACATTATTAGAAGTGTGAATCTCCAGCATATCCTTAATGCTAAGGAATACAACAATTGCAGTTTCCAAAAAAAACAAAAAACAAATATATGAAGTGTGAATCAGTTGCTGTAACATGTGCTTTGTGTGTGAGCTATCTTCAGGACAGTATGCAAGGTCCATCTTTTGTGGACTCTGCAACTTCTCAGCCTTGTATCACAAACTGAGCTTGTAACCAAAGTGAACAGCTCCTGCCTCTTGGCTCTGGAGTTATCCCCATTTTCTTTTATATGATTGTTTTTGCTCAAGCAAAGCATGCATCTGGTGATAATGTTGTATGGTTTGTTTCTATGTGGCTACAGTGTTTGTTTTCGTAGTTGTATAAAAAAGGTGTTGTTTTCTTGCTTCAAGTTCATATAGTTTGCTATTTCATTGAATTGCAGATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTG</genome_strand>
        <mrna_strand>AAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG...................................................................................GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG........................................................................................................................CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAAATTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270784" ref_strand="+" ref_description="SGN-E270784 [cLEM-6-A15]">
      <seq>aaactttctggtaaaaggaaagctcaaagacaacaaagcaacaggaacagatagtggccctactaagtgctcctctggagaagtataaggatatagatactgcgctaaagctgtcaaattatcctcgtcttatggagaatcttgacgattcaactagtaaagagatggctaatgttttagtacaaaatattttgaaaaataagacttgcatttcaactgctgaaaaggttgaggcactttttgagttaatgaaagcactaattcgagatttggatgagggtgttgatgatgagcttgatgaagatgatttccaggaagagcagaattctgttgcgcagcttattcaaatgcttcacaatgatgatcctgaagagatgctgaagattatttgtgctgtgaagaagcacattttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="36849" stop="39332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37149" g_stop="37373" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37374" i_stop="37456" i_length="83">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37457" g_stop="37522" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="293" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37523" i_stop="37642" i_length="120">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37643" g_stop="37732" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="383" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37733" i_stop="38638" i_length="906">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38639" g_stop="38728" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="473" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38729" i_stop="38999" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39000" g_stop="39032" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="506" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E270784" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37149" e_stop="37373"/>
          <exon e_start="37457" e_stop="37522"/>
          <exon e_start="37643" e_stop="37732"/>
          <exon e_start="38639" e_stop="38728"/>
          <exon e_start="39000" e_stop="39032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCTGG-AAAAGGAAAGCTCAAAGACAACAAAGCAACA-AAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAGGTTTGATTCTAGATAATTTTGTGTACTTCAATTTATTGCTTACAAATGTTACCCATGTTTCTACGAATTACTGGTCTTATCAGGTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAGGTGGACTGGAAACTCTGTGCTTGCATAAAAGTTCCTTAGTTCTTTCTTATATTTTCCTTTCATCACATATTTAAAATTAGTTTGTGCTGTGCCTTAAATTCTTTATCCTCCAATTTTCAGCTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAGGTAATTATGATTTACTTTCTTTTGAATTACTTGTATACTCCTTTTATGGATTAATTACTAGCTCTTGCAAGAGAAGACAGTAATATTCCCTATTACCCTCTGAGTTTATCAGAGAGATAAATAGGAATGAGCTCTTGAGTTTTGACATTAGTTGCAACTTGTATGTGATGAATTGGATGTATGTATAATGATCTACTGTAGTGTTAAGTTTTCACTTTATTGTGAAGGAGGAAAAACAAAATAAGAAAATGATGAAAAGTCACTGCCAACACTAGGGAAGAACTTTAAGCTGATCATGATTTGCTAGTCTTATCTTTTCATTTGGGGGATAATTTTACAGAAATTAGAAAGAAAAAAGACGTCAAACACATAATAGTCTTGACTATGTGTCCCCGATTAGTCTGTATAGTAAACATATAAAAGTAAGTATAAAAAATAATTAAATAACAACATTGGCATTTCCATTTGATTAAAATTTCAAGGTAACATTATTAGAAGTGTGAATCTCCAGCATATCCTTAATGCTAAGGAATACAACAATTGCAGTTTCCAAAAAAAACAAAAAACAAATATATGAAGTGTGAATCAGTTGCTGTAACATGTGCTTTGTGTGTGAGCTATCTTCAGGACAGTATGCAAGGTCCATCTTTTGTGGACTCTGCAACTTCTCAGCCTTGTATCACAAACTGAGCTTGTAACCAAAGTGAACAGCTCCTGCCTCTTGGCTCTGGAGTTATCCCCATTTTCTTTTATATGATTGTTTTTGCTCAAGCAAAGCATGCATCTGGTGATAATGTTGTATGGTTTGTTTCTATGTGGCTACAGTGTTTGTTTTCGTAGTTGTATAAAAAAGGTGTTGTTTTCTTGCTTCAAGTTCATATAGTTTGCTATTTCATTGAATTGCAGATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAAT</genome_strand>
        <mrna_strand>AAACTTTCTGGTAAAAGGAAAGCTCAAAGACAACAAAGCAACAGGAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG...................................................................................GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG........................................................................................................................CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252267" ref_strand="+" ref_description="SGN-E252267 [cLEG-12-O2]">
      <seq>attttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgcaatacacttgataataggaactcttcagagaatgcacatctttggtgttgagaacagggacacgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgtagagctgtgtatgcttgttcgcatcttttctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagcgggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="38363" stop="40551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38663" g_stop="38728" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38729" i_stop="38999" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39000" g_stop="39089" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="156" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39090" i_stop="39360" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39361" g_stop="39429" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39430" i_stop="39508" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39509" g_stop="39589" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="306" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39590" i_stop="39697" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39698" g_stop="39805" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39806" i_stop="39894" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39895" g_stop="39998" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="518" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39999" i_stop="40134" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40135" g_stop="40248" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="632" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40249" i_stop="40339" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40340" g_stop="40345" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="638" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E252267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38663" e_stop="38728"/>
          <exon e_start="39000" e_stop="39089"/>
          <exon e_start="39361" e_stop="39429"/>
          <exon e_start="39509" e_stop="39589"/>
          <exon e_start="39698" e_stop="39805"/>
          <exon e_start="39895" e_stop="39998"/>
          <exon e_start="40135" e_stop="40248"/>
          <exon e_start="40340" e_stop="40345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGGGTAATTATCTTAGCATCTCCTATTTCCTTTTGCTGAAGTTAATCTATTACAAATTAATTATAATCACTGTTGCCCTTTTCACCCTCCAGTACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCT</genome_strand>
        <mrna_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG.........................................................................................TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375171" ref_strand="+" ref_description="SGN-E375171 [TUS-34-H15]">
      <seq>attttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaggctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgcaatacacttgataataggaactcttcagagaatgcacatctttggtgttgagaacagggacacgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgtagagctgtgtatgcttgttcgcatcttttctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagcgggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="38363" stop="40526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38663" g_stop="38728" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38729" i_stop="38999" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39000" g_stop="39089" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="156" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39090" i_stop="39360" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39361" g_stop="39429" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39430" i_stop="39508" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39509" g_stop="39589" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="306" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39590" i_stop="39697" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39698" g_stop="39805" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39806" i_stop="39894" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39895" g_stop="39998" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="518" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39999" i_stop="40134" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40135" g_stop="40226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="610" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E375171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38663" e_stop="38728"/>
          <exon e_start="39000" e_stop="39089"/>
          <exon e_start="39361" e_stop="39429"/>
          <exon e_start="39509" e_stop="39589"/>
          <exon e_start="39698" e_stop="39805"/>
          <exon e_start="39895" e_stop="39998"/>
          <exon e_start="40135" e_stop="40226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGGGTAATTATCTTAGCATCTCCTATTTCCTTTTGCTGAAGTTAATCTATTACAAATTAATTATAATCACTGTTGCCCTTTTCACCCTCCAGTACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGC</genome_strand>
        <mrna_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG.........................................................................................TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252598" ref_strand="+" ref_description="SGN-E252598 [cLEG-20-I4]">
      <seq>attttgacaggagggccaaagagacttccttttactgtccctccccttattttcaactcactaaagtttgttaggcgactacatagtcatgatgaaaatgttcctgaggaagagtcatctgctatgcctaagaaattctttcagattctgaatcagattattgaggcgctctcaattgttcctgtacctgaactagcactgaagctgtacctggagtgtgctgaagctgccaatgactctgacatagagcctgttgcctatgaatttttcactcaagcttatatactatatgaagaagaaatttcggactccaaagcacaggtgactgcaatacacttgataataggaactcttcagagaatgcacatctttggtgttgagaacagggacacgttaacgcacaaggctacagggtactctgcaaagctcttgaagaaacctgatcaatgtagagctgtgtatgcttgttcgcatcttttctgggttgacgatcaggacaatatcaaggatggagaaagggttttgctttgcttaaagccggcctttaagaattgcaaatgctgctcaacaaatgtccaatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="38363" stop="40499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38663" g_stop="38728" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38729" i_stop="38999" i_length="271">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39000" g_stop="39089" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="156" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39090" i_stop="39360" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39361" g_stop="39429" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39430" i_stop="39508" i_length="79">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39509" g_stop="39589" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="306" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39590" i_stop="39697" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39698" g_stop="39805" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="414" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39806" i_stop="39894" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39895" g_stop="39998" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="518" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39999" i_stop="40134" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40135" g_stop="40199" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="584" r_length="66" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E252598" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38663" e_stop="38728"/>
          <exon e_start="39000" e_stop="39089"/>
          <exon e_start="39361" e_stop="39429"/>
          <exon e_start="39509" e_stop="39589"/>
          <exon e_start="39698" e_stop="39805"/>
          <exon e_start="39895" e_stop="39998"/>
          <exon e_start="40135" e_stop="40199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAGGTTTGAATCTGCAACTTAAGGGCTAGAAGAGAAGGCTGGTGCTCAAATTCCTTTATTTTTCTTAGTGCAAAGCTGATGAAGGGGACTTGTTCAAATGTAGCATGTCGGGATGATCCTTCACCTATGGAACTACTCACTCTAAGAACAATAAATATTATATATAATCCCCCATTGGTCCCCATTAAAGAGAATAAAGAGAGGATTGAGTTTCTTCGCAAATAAAATTGTCCTACTTTTGTTGCACTGCTGATGTATTTTCTTTTGTTTCTAGTTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAGGTATGCTAACATAACGAGGATGCTACGTTATGAGTGTAAATCTTGTTATGTGAGTTGCGTTGTCAAGACTGGTAACTCATTGCAGTTGAACCTGTTAAGACACACCTCTATTATCTGCAGACGAAGAAGAGAAAAAGTTTCAGCTTTTCTTATTCTTCTATTCCTTCCATTATTTAGCTTCCCTTCCTTCATTTGCAGTAATTCGTACAATTCTATAATACTCATGAATGTTCTGAGGTATTTCCGTTACTTATAAGCTACCCTTCGTTAGATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAGGTACTGGATTTTCCTTCAAACTGTGGAAGATAGTTTGTGTTTTTTTTTTTACTGACAAGCAGTTGTCTGTGTTGCTCAGGCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCGGTATTATTTTATTGTGTCTCGATTTATATTATGGAATTCCTGGCCTGCTACATGTTTGCCTGAAAGCTTTAGTTGATTTTTCTGATGTTAATTCAACTTTTTTGGCAGGACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGGGTAATTATCTTAGCATCTCCTATTTCCTTTTGCTGAAGTTAATCTATTACAAATTAATTATAATCACTGTTGCCCTTTTCACCCTCCAGTACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAGGTTCATAGCTGTGCCTTGCGTGTTTAGGGGATAAAATATACATTCAAATATGCTATGTCTCTTTGGAGTTCCTTTTAGTTTCATGCTTTTCTGTAGCCATCTTCTTATGTGTTACTTATTTCCCCTATTGATTCAGGGTTTTGCTTTGCTTAAAGCGGGCC-TTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAA</genome_strand>
        <mrna_strand>ATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG...............................................................................................................................................................................................................................................................................TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG...............................................................................................................................................................................................................................................................................ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAA...............................................................................GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG............................................................................................................GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG.........................................................................................TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG........................................................................................................................................GGTTTTGCTTTGCTTAAAGCCGGCCTTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370144" ref_strand="+" ref_description="SGN-E370144 [TUS-28-A6](-)">
      <seq>aagcggggccttaagaattgcaaatgctgctcaacaaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctgtatttctttgagaagggggtctcacaaattaatgttgcctccgtccagagcctgattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagcatttctcaaaggaattacgttcttggtgtcacagaagcagcacatttttcttacaaagtacaaaattgattccttttcaacttgctctagagaaaaatgcatttgacaacggactagcagaagcagctgaaaagatgcatatatactgaccacacccctacgcagtaatatcctaataaagattgttattgttgtaacaatttgctctccagctatgacttccgagtgcctgccactgttacttttttttttttttttggtggagagtaggttttcttttgaggtggaagagacaaggagtggagaagtagttcattaatttgtagttcagaaatgtgattatgacgagtactagaataatttgtccctcagttttgtataacatgttctgtcccaaaaaacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="39851" stop="41255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40151" g_stop="40248" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40249" i_stop="40339" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40340" g_stop="40954" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="714" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="734"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E370144" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40151" e_stop="40248"/>
          <exon e_start="40340" e_stop="40954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGC-GGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCC</genome_strand>
        <mrna_strand>AAGCGGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375170" ref_strand="+" ref_description="SGN-E375170 [TUS-34-H15](-)">
      <seq>aaatgtccaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaacaagtatctgtatttctttgagaagggggtctcacaaattaatgttgcctccgtccagagcctgattgagctaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagcagatgccttctttgcaagcaccttgcgatacatccagttccagaaggataaaggtggtgcagttggggagaaattcgagtccatcaactcataatcaaatagcatttctcaaaggaattacgttcttggtgtcacagaagcagcacatttttcttacaaagtacaaaattgattccttttcaacttgctctagagaaaaatgcatttgacaacggactagcagaagcagctgaaaagatgcatatatactgaccacacccctacgcagtaatatcctaataaagattgttattgttgtaacaatttgctctccagctatgacttccgagtgcctgccactgttactttttttttttttttggtggagagtaggttttcttttgaggtggaagagacaaggagtggagaagtagttcattaatttgtagttcagaaatgtgattatgacgagtactagaataatttgtccctcagttttgtataacatgttctgtcccatttaacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="39885" stop="41264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40185" g_stop="40248" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40249" i_stop="40339" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40340" g_stop="40963" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="687" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="698"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E375170" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40185" e_stop="40248"/>
          <exon e_start="40340" e_stop="40963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAAGTAAAACCAACTCTTCATTCCTGTTCTTTTTACCTTCTCAACTACTGTTCTTTTGGAAGTCAATTTTACAAGAGATTCGTTTGTATAACAGGTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</genome_strand>
        <mrna_strand>AAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA...........................................................................................GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTAC-TTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712225" ref_strand="+" ref_description="SGN-E712225 [FB04BA09]">
      <seq>cttttctctccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="42674" stop="41037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42374" g_stop="42265" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42264" i_stop="42180" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42179" g_stop="42052" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="238" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42051" i_stop="41983" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41982" g_stop="41878" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="343" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41877" i_stop="41634" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41633" g_stop="41322" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="655" r_length="312" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E712225" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42374" e_stop="42265"/>
          <exon e_start="42179" e_stop="42052"/>
          <exon e_start="41982" e_stop="41878"/>
          <exon e_start="41633" e_stop="41322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATT</genome_strand>
        <mrna_strand>CTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733112" ref_strand="+" ref_description="SGN-E733112 [LB04AA07]">
      <seq>cattatcttttctctccttttaacttttaaagtcttctcattattaatggcatccaggagaattcaaaaggagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttattttttctgttattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="42680" stop="41024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42380" g_stop="42265" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42264" i_stop="42180" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42179" g_stop="42052" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="244" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42051" i_stop="41983" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41982" g_stop="41878" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="349" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41877" i_stop="41634" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41633" g_stop="41324" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="659" r_length="310" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E733112" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42380" e_stop="42265"/>
          <exon e_start="42179" e_stop="42052"/>
          <exon e_start="41982" e_stop="41878"/>
          <exon e_start="41633" e_stop="41324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAA</genome_strand>
        <mrna_strand>CATTATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736134" ref_strand="+" ref_description="SGN-E736134 [LC04CA02]">
      <seq>cgaatagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggtgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccagatgatccactggttccagaaattgctcatatgtgcaagactgataaaaccaagtacgagtcaatggctcgtagttggactcaaaagtatgccatgaactgagtctcaacaaacacaaaattattgctacaagcaatatataatatgttcaggagaacttttgctctatgaaaatgagaattcagtgacggttggatgtatttatattatcgggattcgttttaaataaaaagggtgattttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="42595" stop="40498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42295" g_stop="42265" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42264" i_stop="42180" i_length="85">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42179" g_stop="42052" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="159" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42051" i_stop="41983" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41982" g_stop="41878" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="264" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41877" i_stop="41634" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41633" g_stop="41346" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="552" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="582"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E736134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42295" e_stop="42265"/>
          <exon e_start="42179" e_stop="42052"/>
          <exon e_start="41982" e_stop="41878"/>
          <exon e_start="41633" e_stop="41346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTT</genome_strand>
        <mrna_strand>CGAATAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708959" ref_strand="+" ref_description="SGN-E708959 [FA42BA04]">
      <seq>ctcattattaatggcatccaggagaattcaccttgagctaaaagacttgcaaagagaccctcccacttcatgcagtgcaggtccagtagctcaggatatgtttcattggcaagcaactattattggtccaaatgatagcccttatgctggtggcgttttccaagtcaccatccattttcctcctgattaccctttcaaacctcccaaggtggctttcaggaccagagtttttcatccaaatataaacaataatggaaatatttgtttggacatactgaaggatcaatggagtcctgccctcaccatatccaaggttttgctgtccatatgttcactgctaacagatccaaatccacatgatccactggttccagaaattgctcatatgtgcaagactgataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="42644" stop="41242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42344" g_stop="42265" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42264" i_stop="42180" i_length="85">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42179" g_stop="42052" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="208" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42051" i_stop="41983" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41982" g_stop="41878" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="313" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41877" i_stop="41634" i_length="244">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41633" g_stop="41542" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="405" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E708959" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42344" e_stop="42265"/>
          <exon e_start="42179" e_stop="42052"/>
          <exon e_start="41982" e_stop="41878"/>
          <exon e_start="41633" e_stop="41542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAGGTACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTCTCCACAAAGGGACTGCTGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGATTTACTATTTCATAAATCAAAAGGGATACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATAAAATCCAAGTCGCATAAAGGATAACTGTAATTAAATGTTCATATATAAACGGAACTAGTTACCTGAAAATAAGACCAGTAACTTGCAAAAACAATATAGTATAAACTTCTACAATTTGCTGTTGGTTTTGTGGATGAAGGTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAAC</genome_strand>
        <mrna_strand>CTCATTATTAATGGCATCCAGGAGAATTCACCTTGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG.....................................................................................GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGCGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG.....................................................................GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG....................................................................................................................................................................................................................................................GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCACATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369317" ref_strand="+" ref_description="SGN-E369317 [TUS-25-C22](-)">
      <seq>aaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattcttcgtagaccatcctggtgctgtgccaattaccactgctcagggtgaagagctgaggaaaacaattggtgcacctgcttacattgaatgtagttcaaaaacacagcagaacgtgaaagcagtctttgatgccgctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtaggtccaatgttattactggtcacacttctccttgtaacctctctctcgtattcctttgtcatttgtctcggaggaagtaggaggtccatgttgtatgtctcatttaaaattactagtgatctcttgaattgtcaggtggctcggttttttgtgtaatggctgtgatctttaattgtttagtcacacagcacctttgtcgtaggccactctattgtgccctctctgttgtgatttgctttatatgtattttaatgacctgatgatccagttagaaaaaaaaaaaaaggaaattttcccggcaatgttgacaacatatttctctgaacatattaaacgtttctttttagatattgcattcaagatatattactattttctttcaagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="46104" stop="43729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45804" g_stop="45788" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45787" i_stop="45707" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45706" g_stop="45643" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="81" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45642" i_stop="44860" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44859" g_stop="44795" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="146" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44794" i_stop="44692" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44691" g_stop="44626" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="212" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44625" i_stop="44525" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44524" g_stop="44032" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="706" r_length="494" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E369317" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45804" e_stop="45788"/>
          <exon e_start="45706" e_stop="45643"/>
          <exon e_start="44859" e_stop="44795"/>
          <exon e_start="44691" e_stop="44626"/>
          <exon e_start="44524" e_stop="44032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAA-ATATATTACTATTTTCTTTCAA</genome_strand>
        <mrna_strand>AAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG.......................................................................................................GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG.....................................................................................................AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTTTGTGTAATGGCTGTGATCTTTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTGTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAGATATATTACTATTTTCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216696" ref_strand="+" ref_description="SGN-E216696 [cLEL-1-P8](-)">
      <seq>ctatcaaggtcgtgctccagccacccaagcagaagaaaaagaaggggaagtcccaaaaggcatgttctattttgtgatcaacagtaggtccaatgttattactggtcacacttctccttgtaacctctctctcgtattcctttgtcatttgtctcggaggaagtaggaggtccatgttgtatgtctcatttaaaattactagtgatctcttgaattgtcaggtggctcggttttctgtgtaatggctgtgatctctaattgtttagtcacacagcacctttgtcgtaggccactctattgtgccctctctgttctgatttgctttaaatgtattttaatgacctgaaaaaccacctagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="44799" stop="43824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44499" g_stop="44124" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E216696" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44499" e_stop="44124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAA</genome_strand>
        <mrna_strand>CTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTAAATGTATTTTAATGACCTGAAAAACCACCTAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271092" ref_strand="+" ref_description="SGN-E271092 [cLEM-22-K13]">
      <seq>acggattatgtgccaactgtgtttgacaatttcagtgcaaatgtggttgtcaatggggctactgtcaacctaaggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttatcgtggagctgatgttttcattttggcattctctctcatcagtaaagccagttatgaaaatgtttccaagaagtggattcctgagttgaagcattacgcccctggtgtccctattgtgcttgttggaacaaaacttgatcttcgagatgataagcaattcttcatagaccatccaggtgccgtgccaattactactgctcagggtgaagagctgaggaaaacaattggtgcaccttcctacattgaatgtagttcaaaaacacaggagaatgtaaaaggagtatttgatgctgccattaaagttgtgctccagccacccaaggcaaagaaaaagaaagggaagtcccaaagggcctgctcaattttgtgatcaacagttggtccggggttattcctggtcacagttttcacacgttgtaatctgtcccctcatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="46408" stop="44109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46104" g_stop="46017" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="91" r_length="88" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46016" i_stop="45898" i_length="119">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45897" g_stop="45788" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="201" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45787" i_stop="45707" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45706" g_stop="45643" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="265" r_length="64" r_score="0.891"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45642" i_stop="44860" i_length="783">
            <donor d_prob="0.959" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44859" g_stop="44795" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="330" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44794" i_stop="44692" i_length="103">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44691" g_stop="44626" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="396" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44625" i_stop="44525" i_length="101">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.920" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44524" g_stop="44396" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="525" r_length="129" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E271092" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46104" e_stop="46017"/>
          <exon e_start="45897" e_stop="45788"/>
          <exon e_start="45706" e_stop="45643"/>
          <exon e_start="44859" e_stop="44795"/>
          <exon e_start="44691" e_stop="44626"/>
          <exon e_start="44524" e_stop="44396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAGGTAAGGATCACCTACTCTTCCTCATTTTGATGCTTTGCTGGATTTTTTTTTACCTTGCTTTTTTTCCCCTATTATTTTGACTCAGCCCTGTTTCAATTTTTAGGGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGGTATGTTTTCTATGGCAGCATCTTATTTTTTGTGTTGAAGTAACTTTTTAGATGCATCTTGTTAAGTGTGTGCCTGTGTGGTTGGAATGTCCTTGCTGCAGAACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTG</genome_strand>
        <mrna_strand>GATTATGTGCCAACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCTACTGTCAACCTAAGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTATCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATCAGTAAAGCCAGTTATGAAAATGTTTCCAAGAAG.................................................................................TGGATTCCTGAGTTGAAGCATTACGCCCCTGGTGTCCCTATTGTGCTTGTTGGAACAAAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGATGATAAGCAATTCTTCATAGACCATCCAGGTGCCGTGCCAATTACTACTGCTCAG.......................................................................................................GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTTCCTACATTGAATGTAGTTCAAAAACACAGGAG.....................................................................................................AATGTAAAAGGAGTATTTGATGCTGCCATTAAAGTTGTGCTCCAGCCACCCAAGGCAAAGAAAAAGAAAGGGAAGTCCCAAAGGGCCTGCTCAATTTTGTGATCAACAGTTGGTCCGGGGTTATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710431" ref_strand="+" ref_description="SGN-E710431 [FA55BF07]">
      <seq>cttttctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattcttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47678" stop="44532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47378" g_stop="46868" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46017" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="598" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46016" i_stop="45898" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45897" g_stop="45788" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="708" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45787" i_stop="45707" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45706" g_stop="45643" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="772" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45642" i_stop="44860" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44859" g_stop="44832" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="800" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E710431" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47378" e_stop="46868"/>
          <exon e_start="46104" e_stop="46017"/>
          <exon e_start="45897" e_stop="45788"/>
          <exon e_start="45706" e_stop="45643"/>
          <exon e_start="44859" e_stop="44832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTTCGT</genome_strand>
        <mrna_strand>CTTT-TCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706687" ref_strand="+" ref_description="SGN-E706687 [FA30CF04]">
      <seq>cattatttcccggctaaaacaaagggttacttataatactgactcagaatggaaaaaaatacagagatgaacacccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctatgaaaacgttgccaagaagtggattcctgaattgaagcattatgcccccggtgttccaatagtgcttgttggaacaaaactagatcttcgggatgataagcaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47767" stop="44535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47467" g_stop="46868" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46017" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="688" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46016" i_stop="45898" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45897" g_stop="45788" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="798" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45787" i_stop="45707" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45706" g_stop="45643" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="862" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45642" i_stop="44860" i_length="783">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44859" g_stop="44835" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="887" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E706687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47467" e_stop="46868"/>
          <exon e_start="46104" e_stop="46017"/>
          <exon e_start="45897" e_stop="45788"/>
          <exon e_start="45706" e_stop="45643"/>
          <exon e_start="44859" e_stop="44835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAGGTGAGAATTCCGTTAAGCATGATCTGATCTTATTTTGTTTCATATATCTGCGTGTGATGATGATCAAATTGGTCTCTATAAGCTTTTCTCTTGGTTCTTCAATTCTGAGTGGTAAAAAGAACAAATTCCGATAGAAATATAAGGATGTTTCAGCACATATGACCTAACTTGCTTGGTTGAGTGAACTTTGAAACCTATAGTTGTGTGAGCGTAAATAGAATGGAAATTAAATGGCTCATATAGCCCGATCCCAACCGATTTGGGATTAAGGTGTAGTTCATTGATTGATTGATTGATCTAAGTGGTTTTAGTAATTCATACAAAATTTATGGTAACTGCTGAAGAGAGAATAAAGAGAATGGCGGGCTTTCTATCTGGTATAGCTGGTGAATGGTTTGTGGGTAGTAGATGTGGTAATCTTTTTGCTTTTGCTCAATGTACTCATTTATAATTGAGTTGAAGGAATTAACTCTTCCTATAGGTATCAATGCAATGCTTAATTGATATATAGGAATTAATCTCTCTTTTTAAAGATAAAGTTAAATCAAGGAGGAGATGGCAGTTGAATTTGAATCTGAATGCAACCACCGCCTTGTGTGGAGTAGTGCAATCTCTGCTCACTATACTGGGCAAGCGTGAACTGGAAAGATACGACTTGTGTTGTGTGACTTGTGTCTAACTTTTATTTCATTTTTTTGTTATTTTGTTTCTCTTTTTATCTGCTGATGATTTTCAAGCATCTCAAAGCCTAATTATCCTACTTTCTACCTGTTTTGGATGCAGATCTTCGGGATGATAAGCAATTCTT</genome_strand>
        <mrna_strand>CATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG.................................................................................TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGGGATGATAAGCAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369318" ref_strand="+" ref_description="SGN-E369318 [TUS-25-C22]">
      <seq>tgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctggacaggaggattacaataggttaagacctctgagttaccgtggagctgatgttttcattttggcattctctctcattagtaaagccagctattaaaacgttgcccagaagtggattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47641" stop="45479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47341" g_stop="46868" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46017" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="562" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46016" i_stop="45898" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45897" g_stop="45788" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="672" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45787" i_stop="45707" i_length="81">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45706" g_stop="45697" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="682" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E369318" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47341" e_stop="46868"/>
          <exon e_start="46104" e_stop="46017"/>
          <exon e_start="45897" e_stop="45788"/>
          <exon e_start="45706" e_stop="45697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTGGTAACTATTTTAGACACCATTTTGTTTGCTCCTGAGCTTCTGATTTGATACATATATCTAATGTTAAAAGTTCTGTTCCCACATTTTATTGAGCCTGATGAGTTTTATATGGATTGCAGGACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAGGTGAGCTTCTCATTCTGTTTCAATTGCGTTGATGAGTTTTTTATTTCCTATACTAAGCTTGTTTTGTTTATATATTTCCAGTGGATTCCTG</genome_strand>
        <mrna_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG.......................................................................................................................GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATTAAAACGTTGCCCAGAAG.................................................................................TGGATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316140" ref_strand="+" ref_description="SGN-E316140 [cTOA-23-L14]">
      <seq>acccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcactgtcaacctagggttgtgggatactgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47695" stop="45716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47395" g_stop="46868" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46017" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="616" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E316140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47395" e_stop="46868"/>
          <exon e_start="46104" e_stop="46017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG</genome_strand>
        <mrna_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343807" ref_strand="+" ref_description="SGN-E343807 [cTOF-12-M7]">
      <seq>tttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaaatgtggtcgtcaatgggaagcactgtcaacctaaggttgtggggatacctgctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47690" stop="45716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47390" g_stop="46868" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46017" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="615" r_length="92" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E343807" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47390" e_stop="46868"/>
          <exon e_start="46104" e_stop="46017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGC-AAATGTGGTCGTCAATGGG-AGCACTGTCAACCTAGGGTTGT-GGGATA-CTGCTG</genome_strand>
        <mrna_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAAATGTGGTCGTCAATGGGAAGCACTGTCAACCTAAGGTTGTGGGGATACCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316054" ref_strand="+" ref_description="SGN-E316054 [cTOA-23-M20]">
      <seq>tttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtccgcgatggtgccgttggaaagacgagtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggacgtcaatgggagcactgtcaacctatggttgtgggatactgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47690" stop="45716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47390" g_stop="46868" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46017" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="611" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E316054" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47390" e_stop="46868"/>
          <exon e_start="46104" e_stop="46017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG</genome_strand>
        <mrna_strand>TTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCCGCGATGGTGCCGTTGGAAAGACGAGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGACGTCAATGGGAGCACTGTCAACCTATGGTTGTGGGATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316139" ref_strand="+" ref_description="SGN-E316139 [cTOA-23-L12]">
      <seq>acccatttattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccnacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47695" stop="45745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47395" g_stop="46868" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46045" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="589" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E316139" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47395" e_stop="46868"/>
          <exon e_start="46104" e_stop="46045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCC-ACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</genome_strand>
        <mrna_strand>ACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCNACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247259" ref_strand="+" ref_description="SGN-E247259 [cLEF-46-L8]">
      <seq>tgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcaaatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacaccagcaataccttccccacggattatgtgcccaccgtgttcgacaatttcagtgcaaatgtggtcgtcaatgggagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47641" stop="45745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47341" g_stop="46868" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46104" g_stop="46045" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="534" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E247259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47341" e_stop="46868"/>
          <exon e_start="46104" e_stop="46045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACGGTTTGTGTTTTTTCTTTACCCAGTTTATTCCCTTGTGCATCTTTTTTAGTTAATGTGGTTCTTGATTAAATAATTGATTGATCGAAAACAGCATATATATTCTGACGGTATTCATTGTAAAGAAATTGGTGCCTCTTGTTTCTTTTTTTCAACTATTGAGTAATGGAATTGAAACGAGCCCAAGTGGAGCATTGGGAGTTAATTGTTGTTTGTTTATTTGCAAGGTTGTGGGGTTTTGTTCTTTTGTTATTCAAGTTCTATATGGGGTATAAAGAAGGTATCGTGGAGAAATTTATAGGTTCACAAGTTTGTTTGCTTCAGACAACTTTTTAACCTATGCATAATTTATGTCTTATTATAAATTTATTAGGTGATAAAAAATGCATCTTCTTTGTTCTCTTGGAGAAAGTTTCTTAGTTCTCAAAATTTTTCTGCTTTATGCCACCTTTTGTAATTATATGCTGAGTTATTCCATTATTGCGAAGTTATTACATGCCTTTTTTCAACCTATCTGTGATAATTTGTGCTATGTATGAGGAAACCAAGGATTATAATTCTCTCTTACGTTAAATTGATGATTTTTGGAACATTAAATTAATTTTCCTCTTTGGTTGGTGCCTATACTTCATTGTGGATTTGGAGAAAGTTGTGGTGTTATCATTCGAGTATTTCATATGTTTGTTTACTGTGAGAAGGTTTTCGGTCATGTTCTTTAAGACTCGACATCAATTGTTTTCCTCTTCTTAATTGAAATGTTTGACAGGATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</genome_strand>
        <mrna_strand>TGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268113" ref_strand="+" ref_description="SGN-E268113 [cLEI-15-M11]">
      <seq>tattttcatcctttctctctctacctcaaactttctctttctagatctgggatccctaaatttctcctcattttctctttaccatttctctattctcattttcattcaccttattccctttcccctcttctacaattctctctgaactttccctttcgtagaattagggttagggtttcaccaagagaaccaaagaaaacaccattggcatgtctcgattttcttctctgctgggttttcaagccattctgaagaaacgacattgaaaggaattggagaggttaaaagaaacggaaacaagaagctccaagataccacatttaatctctttttttctttttaaattttttctgggatcaggtcttctaaagaagatctgaaaagaggagggttattgttggttttctgaatagccgggaaaaatgagtgcttcaaggtttatcanatgtgttaccgtcggcgatggtgccgttggaaagacgtgtctcttgatttcttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="47688" stop="46586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47388" g_stop="46886" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E268113" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47388" e_stop="46886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACC</genome_strand>
        <mrna_strand>TATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCANATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376479" ref_strand="+" ref_description="SGN-E376479 [TUS-17-L17](-)">
      <seq>catgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaactaatatacttgctgatgcatcttatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="50276" stop="48729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49976" g_stop="49911" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49750" g_stop="49607" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="210" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49606" i_stop="49525" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49524" g_stop="49022" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="713" r_length="503" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E376479" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49976" e_stop="49911"/>
          <exon e_start="49750" e_stop="49607"/>
          <exon e_start="49524" e_stop="49022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTATAACTGTTTA</genome_strand>
        <mrna_strand>CATGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744510" ref_strand="+" ref_description="SGN-E744510 [GI|18654277]">
      <seq>atcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="54397" stop="48756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54097" g_stop="53730" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53729" i_stop="51739" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51738" g_stop="51588" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="519" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51587" i_stop="51499" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51498" g_stop="51331" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="687" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51191" g_stop="50965" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="914" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50510" g_stop="50387" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="915" r_stop="1038" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49973" g_stop="49911" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1101" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49750" g_stop="49607" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1102" r_stop="1245" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49606" i_stop="49525" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49524" g_stop="49056" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1714" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E744510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54097" e_stop="53730"/>
          <exon e_start="51738" e_stop="51588"/>
          <exon e_start="51498" e_stop="51331"/>
          <exon e_start="51191" e_stop="50965"/>
          <exon e_start="50510" e_stop="50387"/>
          <exon e_start="49973" e_stop="49911"/>
          <exon e_start="49750" e_stop="49607"/>
          <exon e_start="49524" e_stop="49056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</genome_strand>
        <mrna_strand>ATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294790" ref_strand="+" ref_description="SGN-E294790 [cLET-17-J23]">
      <seq>aaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgccctctgtgaaatacaagatgcctttttgctagttcttaccctttggttagtgtaatatttcttgagctttcaaatatttgtatacagcatttctgtgtgtatttttccgctgtcaaatcttctttatacttgtagcctaacagtggagccccatcatctgctaataatattcataatggatgagttgtctcttcaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="49656" stop="48751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49356" g_stop="49056" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E294790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49356" e_stop="49056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</genome_strand>
        <mrna_strand>AAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280464" ref_strand="+" ref_description="SGN-E280464 [cLER-1-A13]">
      <seq>tagtctcgagtttttttttttttttttttaggctacaagtataaagaagatttgacagcggaaaaatacacacagaaatgctgtatacaaatatttgaaagctcaagaaatattacactaaccaaagggtaagaactagcaaaaaggcatcttgtatttcacagagggcataagcatacctccaagcgctaacagagctgcctacaaccttgaccaaccttttcagaattggactaatggttttagcagatcataaaacttgtatttttgtcgaacaattgcttctatgtaacaactccaattgcttaagatttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="40502" stop="49706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49086" g_stop="49406" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E280464" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49086" e_stop="49406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTAGCAGATGATGGGGCTCCACTGTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGAAATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGGCATCTTGTATTTCACAGAGGGCATAAGCATACCTCCAAGCGCTAACAGAGCTGCCTACAACCTTGACCAACCTTTTCAGAATTGGACTAATGGTTTTAGCAGATCATAAAACTTGTATTTTTGTCGAACAATTGCTTCTATGTAACAACTCCAATTGCTTAAGATTTGGAAA</genome_strand>
        <mrna_strand>TAGTCTC-G-AGTTTTTTTTTTTTTTTTTTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGAAATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGGCATCTTGTATTTCACAGAGGGCATAAGCATACCTCCAAGCGCTAACAGAGCTGCCTACAACCTTGACCAACCTTTTCAGAATTGGACTAATGGTTTTAGCAGATCATAAAACTTGTATTTTTGTCGAACAATTGCTTCTATGTAACAACTCCAATTGCTTAAGATTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704831" ref_strand="+" ref_description="SGN-E704831 [FA25BE11]">
      <seq>ctggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggatcgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagtccaattctgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51466" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51166" g_stop="50965" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50510" g_stop="50387" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="326" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49973" g_stop="49911" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="389" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49750" g_stop="49607" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="533" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49525" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49524" g_stop="49254" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="804" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E704831" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51166" e_stop="50965"/>
          <exon e_start="50510" e_stop="50387"/>
          <exon e_start="49973" e_stop="49911"/>
          <exon e_start="49750" e_stop="49607"/>
          <exon e_start="49524" e_stop="49254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCC</genome_strand>
        <mrna_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATCGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704925" ref_strand="+" ref_description="SGN-E704925 [FA25CF07]">
      <seq>ctggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggatcgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgttttctaccggcgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaaatacaagttttatgatctgctaaaaccattagttcaattccgaaaaggttggtcaaggttgtaggcagctctgttagcgcttggaggtatgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51466" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51166" g_stop="50965" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50510" g_stop="50387" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="326" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49973" g_stop="49911" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="389" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49750" g_stop="49607" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="533" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49525" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49524" g_stop="49256" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="803" r_length="270" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E704925" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51166" e_stop="50965"/>
          <exon e_start="50510" e_stop="50387"/>
          <exon e_start="49973" e_stop="49911"/>
          <exon e_start="49750" e_stop="49607"/>
          <exon e_start="49524" e_stop="49256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTT-TACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATG</genome_strand>
        <mrna_strand>CTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATCGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTCTACCGGCGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTTCAATTCCGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577688" ref_strand="+" ref_description="SGN-E577688 [LE15BH02]">
      <seq>ttggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgggtgcagaagatcttacaacaggcaaagctgccgacttcacctcctgaaactatgactgtggagatgttcaagtctatcatggctgttgataaaaaagtggcagatgggaaactaagacttatccttctaaaaggttcacttggtaactgtgtttttaccggtgattatgaccagaaggccctcgatgaaacactccgtgcattttccaaatcttaagcaattggagttgttacatagaagcaattgttcgacaaaatacaagttttatgatctgctaaaaccattagtccaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51433" stop="49012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51133" g_stop="50965" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50510" g_stop="50387" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="293" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49973" g_stop="49911" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="356" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49750" g_stop="49607" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="500" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49525" i_length="82">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49524" g_stop="49312" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="712" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E577688" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51133" e_stop="50965"/>
          <exon e_start="50510" e_stop="50387"/>
          <exon e_start="49973" e_stop="49911"/>
          <exon e_start="49750" e_stop="49607"/>
          <exon e_start="49524" e_stop="49312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCTGTAAGAGTCAATAGTTTTTCTAAGCTCCTAATAGCTAGAAGTCATTGTTTCAATCATTGATTCTGTTGTTTTTGGGTGTCAGGTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCT</genome_strand>
        <mrna_strand>TTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT..................................................................................GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGAC-AAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725968" ref_strand="+" ref_description="SGN-E725968 [LA08DE11]">
      <seq>gagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcactggtacagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51671" stop="49391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51371" g_stop="51331" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51191" g_stop="50965" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="268" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50510" g_stop="50387" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="392" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49973" g_stop="49911" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="455" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49750" g_stop="49691" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="515" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E725968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51371" e_stop="51331"/>
          <exon e_start="51191" e_stop="50965"/>
          <exon e_start="50510" e_stop="50387"/>
          <exon e_start="49973" e_stop="49911"/>
          <exon e_start="49750" e_stop="49691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGG</genome_strand>
        <mrna_strand>GAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331256" ref_strand="+" ref_description="SGN-E331256 [cTOD-6-D17]">
      <seq>ggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgttcctgtgaaaacaaagcagatgttgtttctcaagatgagaaggaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggctatgggcagtggcttcatggagaagcagttgctgctggaacggtcatggctgttgacatgtcacgccgtcttggttggattgatgactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51726" stop="49401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51426" g_stop="51331" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51191" g_stop="50965" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="323" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50510" g_stop="50387" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="447" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49973" g_stop="49911" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="510" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49750" g_stop="49701" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="560" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E331256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51426" e_stop="51331"/>
          <exon e_start="51191" e_stop="50965"/>
          <exon e_start="50510" e_stop="50387"/>
          <exon e_start="49973" e_stop="49911"/>
          <exon e_start="49750" e_stop="49701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACGGTATAGCTTTCATACTTTCATCACCTCCTATCCAACTGTTCTCTCCCCCCCTACTGGATAGTTCTTCAGAGAAACGTGAAAGAAGAAAACATGAGAAAGTAAAGAGGATAAATTCATATTTGTATACGTGATGCATAAACTAGGTATAATTTTTTTTCAGGTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACT</genome_strand>
        <mrna_strand>GGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG................................................................................................................................................................GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331105" ref_strand="+" ref_description="SGN-E331105 [cTOD-6-D5]">
      <seq>ggtggtggagatatatgtgacatgtgtggttatgccgccgcttcctaccttcgtggagtggattttattcaaatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgctatcaagcgatcctgtgaaaacaaagcagatgttgtttctcaagatgagaaagaaagcggagtgagggcaactttgaacttgggtcatacctttggtcatgcagttgagactggcgttggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51726" stop="49651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51426" g_stop="51331" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51191" g_stop="50965" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="323" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50510" g_stop="50387" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="447" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49973" g_stop="49951" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="470" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E331105" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51426" e_stop="51331"/>
          <exon e_start="51191" e_stop="50965"/>
          <exon e_start="50510" e_stop="50387"/>
          <exon e_start="49973" e_stop="49951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCATGTAAGCGTTAAACAGTTGTTGTGCATTCCTGTTGCTGATACTTTACATGAGCTCGATGACCATCTCATGCTCTCATCATTTAATAGTTTGTTTGCCTGCGAAGACTATATTAGTTAAGAAGTTACCAGTTTCAAAAAAATAAAAACTGTCGTAGGTCAGGGAAACTAGATTTTGTCACTACAGCTTTATGCGAAGTTCATAAGTTTCTATTGTTGTTCTATTTCTCTTTATCTTAAAATTCTCAAGGGATTTGATGCTTGTCTGGAAGTCTCTACTTCCTTGTCTGAAAAAGAATGCTTTTTTTTATGGTGTGACAGTCAAATTGCATCTTAAGAAAATATTGACTGTTACATAGCCTTGTCAAGGTCATTTCTGAGATAATGTCCTCTCACTAGAATAGCTATTATTTGCAGGCAGTTGAGACTGGCGTTGGCTA</genome_strand>
        <mrna_strand>GGTGGTGGAGATATATGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTGGATTTTATTCAAATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCTATCAAGCGATCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAAGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGAGACTGGCGTTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284151" ref_strand="+" ref_description="SGN-E284151 [cLER-13-L4]">
      <seq>gaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaattagcatctggcctcgcagaagtaataaaatatggactcattagagatgctgagtttttcgagtggcaagaacagaatatgccattattattagcaagggaccccactgcatttacctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51949" stop="50186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51649" g_stop="51588" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51587" i_stop="51499" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51498" g_stop="51331" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="230" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51191" g_stop="50965" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="457" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50510" g_stop="50486" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="482" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E284151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51649" e_stop="51588"/>
          <exon e_start="51498" e_stop="51331"/>
          <exon e_start="51191" e_stop="50965"/>
          <exon e_start="50510" e_stop="50486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAGGTAAACAATCATTTGTATGTCATTGAGTAGTTGAATTGCCAACTTTTAGTTTGTCCAGCTTTCATCTCTAGAAAGAGACTTACATAGGCACAAAATTCAATTTTTCTACAATCTTATATGACCCATTAAGAATGTAAGAATATCTTGATGAGAAATAAGGTATCCAAGTGGAGGAGTTATGTGTCCTCCGCACCCCCACCCATTTTTAGGAGTTTGTCAAGTCTTTTGACCTTTATGTTGGGCTTCAATTTGAAGTATCATAACCTTTTATGGATAAGTTGTAACTGTCATTCTAAAGATCAAGCTGGTATCACAAGTATATACAGCAATGTTTGTATGACTCGAACTGAATCATTCGTATCATAACCTGAAGCTTTCAGACTTGCTAAGATTAATGTTTCCTGGCTATCTGATGTGATTTCACATGTTACTGAAAGTGGTTATCCTTTTCCAGGGACCCCACTGCATTTACCTATGCT</genome_strand>
        <mrna_strand>GAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCCACTGCATTTACCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331108" ref_strand="+" ref_description="SGN-E331108 [cTOD-6-F1]">
      <seq>ggtggagttattggtgacatgtgttgttatgccgccgcttcctaccttcgtggagtggattttattcagatccccaccactgttatggcacaggtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaatactttaccagatagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="51723" stop="50763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51423" g_stop="51331" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51191" g_stop="51063" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="222" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E331108" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51423" e_stop="51331"/>
          <exon e_start="51191" e_stop="51063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAA</genome_strand>
        <mrna_strand>GGTGGAGTTATTGGTGACATGTGTTGTTATGCCGCCGCTTCCTACCTTCGTGGAGTGGATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260878" ref_strand="+" ref_description="SGN-E260878 [cLEG-55-E20]">
      <seq>acaaatcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttaactaacacgacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacaggtagattcttctgttggatgcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttatagacacggataccctgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="54401" stop="50780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54101" g_stop="53730" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53729" i_stop="51739" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51738" g_stop="51588" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="524" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51587" i_stop="51499" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51498" g_stop="51331" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="692" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51191" g_stop="51080" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="804" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E260878" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54101" e_stop="53730"/>
          <exon e_start="51738" e_stop="51588"/>
          <exon e_start="51498" e_stop="51331"/>
          <exon e_start="51191" e_stop="51080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTT-ACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATA</genome_strand>
        <mrna_strand>ACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTAACTAACACGACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG...........................................................................................................................................GTAGATTCTTCTGTTGGATGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725737" ref_strand="+" ref_description="SGN-E725737 [LA05CB05]">
      <seq>agcgagttcacaggctcctacagctgtgtgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttgacagatggaaaccctaatgttaccgtagaaagtgtcattttgccagatggtgagcaatttaaaaacatggaaactcttatgaaagtctttgataaagccatcgaatcaaggctggatcgtcgttgtacatttgtcgctctcggtggtggagttataggtgacatgtgtggttatgccgccgcttcctaccttcgtggagttaattttattcagatccccaccactgttatggcacacgtagattcttctgttggaggcaaaactggaataaaccatccacttggtaaaaatatgattggagcattctaccagccacaatgtgtgcttataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="54134" stop="50797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53834" g_stop="53730" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53729" i_stop="51739" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51738" g_stop="51588" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="257" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51587" i_stop="51499" i_length="89">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51498" g_stop="51331" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="425" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51191" g_stop="51097" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="520" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E725737" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53834" e_stop="53730"/>
          <exon e_start="51738" e_stop="51588"/>
          <exon e_start="51498" e_stop="51331"/>
          <exon e_start="51191" e_stop="51097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGTTCACAGGCTCCTACAGTTGT-TGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATGGTAAGCAGCTTTGGGTTTTACGAATATGAGTTTCAAGAGAAATATTTCATCTTTAAGGTTTATGTGACGTTGTCAATATGCTATTTCAGGAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAGGTTCTATGAGTTTTCTCCTTTCTATAATAAATTACATGTGACTTGAAATGTACATTATCTTATCTAGTTTGATGAGTACAGATTTTTCTATTTAGTGATACTAACTTTTGTATCATGTTCTTTGGCCAACTGTTTTTAGGTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGA</genome_strand>
        <mrna_strand>AGCGAGTTCACAGGCTCCTACAGCTGTGTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG.........................................................................................GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAC...........................................................................................................................................GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300364" ref_strand="+" ref_description="SGN-E300364 [cLEW-17-B16]">
      <seq>aatttttctccttccctccgccacaccaactttcatggcgtggtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaggtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttctgccacgaaggtgatggatcactcgtccagtaaagcgagttcacaggctcctacagttgttgaagtggatctgggtactcggagctacccgatttatattggggctggacttcttgatcaacctgacctcctacaaagacatattcatgggaagagagtccttgtcgttactaacactacagttgcccctctatatcttgataaaactataagcgctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="54383" stop="51356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54083" g_stop="53730" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53729" i_stop="51739" i_length="1991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51738" g_stop="51656" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="437" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E300364" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54083" e_stop="53730"/>
          <exon e_start="51738" e_stop="51656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAGGTGACTTACTTGTGCTATCTACTGCTTGAATTTCATCAAATTGCTTAGAGTATATTCATATGTGTTTGTTTTTAATAATGAAAGGAAAACTTTTGCATTCTTTAGTATTAGTTTGACTGACAGAGAGAATAGAGCTACTTCTAATGGAATACTGGATGATGTTAAGTGAAATTAGGAACTTGGAAGTCTTTCCCTGAAAAGCCCGTGTGGGGAAAGAAGAACTCTTAGCATCTGCAGGAAAAAAAAATATACCCGGCGAACTGGAATAGAGTGCGGGATACGATTAGTTGATTGTTTCTAAAGGCAAAATGACATGTTTATATGACATTCTCAATTATCATTCTGGTGATATCCTAGGCAGTTTAGAGGGTAGACTTATATGTCTGCCTCAATTCAAATGTTTCGTTATATGCCCCATGTCTTATGCTTTTTGGTGTTAGCTCATCATTGTCAATATCTTTCAGTTTTCATAGGCTGTATAGAGGGAAGTTCTCGTTTGGTGGTAGTAGTTGAGTGTGTTGGACTTTCTATTTTTGATAAGTGAAATATCCTTTCATTTGTTGATCTATACAAAAATTCTTTCTTCACACTAAAGTATAAATTATAGAAACAGTGTTATTTAAGCTTCTCTTGTTGCTTCGAAACATCTTCCCATTCATTTCATTTCATATAAATAAAAGGCATAGTGAACTAGTGTTCCATTATGCTTTCCCCAAATCCCTAGTCCTCCTACTTGCCGTAGCCTCCTACACTGTCTACGAATGCACTTCATTGATGTCGAACAAAGAGAATTACCGCTCAAAACTGTGAGGCCACTTTACAGTGTGACAGCAACTGATCACTTTCCTTTTCGTACTTCCTGGCACATGCCACACCAGCTTACAGATAAAGCAGGGAGAGAAGGGCCTACTCGTTGGGCAATGAGTTCAGTATAGTTTCTTCATTTTCTGTTCCTATAGTTTGGTTCCAGTGGAATTTTGGCTACGTATTTATCGAGTGATCAAATTAGATGTATTTTCACAATATACTGATAGTGTGATCAAACTCATGAATATTTTTCCTGTAAACCTTTCATCACACTGTGCAAGTATGTTACAAAATGTGAGCAGAGATTGGTGAAGTTCACTTTGGATGCTAGTCATAAAGGATGGGTTACCTATAAAAAAGGAAGTTATAAATGATGGGTTTGGATTGACTTATTAATAGTCTTCTTTGTTTGTTAAAGCGGGTAACAGAGTGTGCTCAAAGAAGTGTTATTTTTATGATGCATATAAAGATTAGTTGGTGAAGGCGCGTATGAATAAACATTAACAATATCTCCAGAAACCACCTCTATTTGAATCAATGATCTTCATGAAAACATAGTCCATTTCAAGCTGGTACAGTTTGAAAGTGAGTCACAATTAGTTAATCTGCCTCTTTGCAAGATGAGATGTATTCAAATCAACTTAGTGACATCCAAACAGTATATCCTAGGATGTCTTTACATCAATAGGTTTTGTTTTCTGTAGCAAAAAATGACCAAGTATAAATGGACACAGAAAACAACAAAATAAAAAGACAATGAGGAACGAATGTTTACTGTTGCCAGTCATGGTGAGCCCCACTTTCCTGTGAAAGAGGGCCAAGCTAGTTGGGAGGACCAAGTAAGTTTTGATTGTGCTCGTCCGGGTTGGTCAGCACTAATACAAGATATTTCTCTTCATGGTTATCGTTGCATTTGCTGATTTATGTGGATATTGAACTATAAGGTTTCAGAAAGAAATATTAACATCTTAGGGTCTTGGTTTCATTTGCTTGTTGGTTGGTTGTTTTTACTTGTTAAGAGAAACAAATTGGATCTATCATGATAACATTTTTGGCATAACTTGGAGTTGTTTCCAGTTTTATGTTAAACTTATTTTATTTTGTGTGTGTGTCTGATTGTCTTTATATTCGTTTGCGACTTCTTGTGAATTTCCATGCTTAATTTCCTGCCGTCTTATATGCAGACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGA</genome_strand>
        <mrna_strand>AATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTGGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208261" ref_strand="+" ref_description="SGN-E208261 [cLEC-37-B2]">
      <seq>aatcgtcgacgccacaatttttctccttccctccgccacaccaactttcatggcgtcgtctttctgcccaaaacaggctttatctttcaccaattcgacccaccaactccaccaatccagagcaattccacgtgacatacacgttcgtttccctgctcccgtctcttcaccttcttccaagtgtgggctgaagtcgaaagccaccacacgattgaaggtgttggcaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="54398" stop="53568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54098" g_stop="53868" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E208261" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54098" e_stop="53868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTC</genome_strand>
        <mrna_strand>AATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAAGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334744" ref_strand="+" ref_description="SGN-E334744 [cTOE-3-O17]">
      <seq>tcgaattatattatcaatggcagcaccaaaagtagatgcagagtatctgaaggaaatagaaaaggcacgaagagatctccgagctctcatctccagcaaaaactgtgctcctattatgcttcgtttagcgtggcatgatgcaggaacctatgatgctacaactaagactggaggacctgatggatcaatcaggaatgaggtagagtacaagcatggcgctaacagcggcctcaaaatcgcaattgatctttgcgaagaaattaaggccagacatcctaaaattacgtatgctgacctctatcagcttgctggagttgttgctgttgaggtaactggaggtccaaccattgattttgtccctggtagaaaggattcattaagttcaccagaagagggacgccttcctgatgctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="73956" stop="75997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74256" g_stop="74384" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74385" i_stop="74461" i_length="77">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74462" g_stop="74586" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="254" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74587" i_stop="75285" i_length="699">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75286" g_stop="75335" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="304" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75336" i_stop="75487" i_length="152">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75488" g_stop="75553" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="370" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75554" i_stop="75651" i_length="98">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75652" g_stop="75697" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="416" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E334744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74256" e_stop="74384"/>
          <exon e_start="74462" e_stop="74586"/>
          <exon e_start="75286" e_stop="75335"/>
          <exon e_start="75488" e_stop="75553"/>
          <exon e_start="75652" e_stop="75697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTATATTATCAATGGCAGCACCAAAAGTAGATGCAGAGTATCTGAAGGAAATAGAAAAGGCACGAAGAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGCGTATGTATGCATAATCATCAAGTTTTGTGTTGAAATTGATTTTTGATCTGATATGATAAAGATGTTTTAATTTGCAGGTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCGGTAAGCTTATTAGCCTTTTGTTTTTCTGGAGTTTCGCGTATATAAGAGATCTAGTGATAATCTGACGGAAATGAATTTGTGTTCATTGATAATGTAATGATTTTAGTTCAAATATATGAGTGCTTTTGATTGATTTTTTTGGATGTTAACAGCGCTAATCACGTCATGTTTTATTATATCGCTTTGCATACTGTTTTTGAGTTCTTATTGGAAGATGAAAAGCTTATCATATCATATTTATGAAATTCTGTTAGTTTGTTCTGCATATAATTGGAGTCTTTCTTTGTGGTGAACAGTTTCTTATGCCTCTTTCTTTGTTCCTAGTATGGGAAGTGAAATTTACTTCGTACTGTTATCATTTTTCAGTTGAAAGCATTTAGGAGAGGTTAGAATTTGTTTAATTTTTACACAGCCACACATAAACTCCCTTACTAGAACTGTAGATCATGAAGCGACTTGAAAACTTTGTATGTATCTATCATCTCCTCCCTGTTTAGCGAAATTTTTACTATTTTCAAGAAAAACAGACAATTTCTAAGTTTTCTCTAAATGAAGATAGACTGGTCCTTGTCTGCTGAGTACACATCCTCCTCATATGCCATATTTTGTTTACAACAAGTGCTTGTTTTGTCAGTTTCATTAACTTTGAAGATACTAAATCCTATCTTCTAATAATCTTTTGTGTTATATGGAGTACAGAAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAGGTGAGAGTACTTGTGTCGAAGATCTGTTCAAAATTTTGGGGAAGTTTTGTTTAATATTAGTTGTATTAGTAGTAGTAATGCAGAGGAGCAAAAATATTATGGTTTTTACGGATTTGAGTTGTGCGTAATTACCTTTTTATTCTGGACTGCAGCTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAGGTACAGAAAAGATGAAGACATGCCTCCTTTTACTATTTTGAACTTCAAATTCATTTGATGGGCTTGTCTTTAATTAGTAAATTCCACCTTTACATCAGGATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAAC</genome_strand>
        <mrna_strand>TCGAATTATATTATCAATGGCAGCACCAAAAGTAGATGCAGAGTATCTGAAGGAAATAGAAAAGGCACGAAGAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGC.............................................................................GTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAG........................................................................................................................................................CTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAG..................................................................................................GATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267582" ref_strand="+" ref_description="SGN-E267582 [cLEI-8-B1]">
      <seq>gagatctccgagctctcatctccagcaaaaactgtgctcctattatgcttcgtttagcgtggcatgatgcaggaacctatgatgctacaactaagactggaggacctgatggatcaatcaggaatgaggtagagtacaagcatggcgctaacagcggcctcaaaatcgcaattgatctttgcgaagaaattaaggccagacatcctaaaattacgtatgctgacctctatcagcttgctggagttgttgctgttgaggtaactggaggtccaaccattgattttgtccctggtagaaaggattcattaagttcaccagaagagggacgccttcctgatgctaaacaaggtccaccgcacctgagggatgttttttacagaatgggactctctgataaagatatagtagcattgtctggaggacacacactgggaagagcacacccagagagatctggctttgagggcccttggactaaagagcctttgaaatttgacaactcatactttgtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="74027" stop="77054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74327" g_stop="74384" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74385" i_stop="74461" i_length="77">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74462" g_stop="74586" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="183" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74587" i_stop="75285" i_length="699">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75286" g_stop="75335" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="233" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75336" i_stop="75487" i_length="152">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75488" g_stop="75553" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="299" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75554" i_stop="75651" i_length="98">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75652" g_stop="75700" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="348" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75701" i_stop="76489" i_length="789">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76490" g_stop="76572" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="431" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76573" i_stop="76671" i_length="99">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76672" g_stop="76751" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="511" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76752" i_stop="76847" i_length="96">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76848" g_stop="76852" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="516" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E267582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74327" e_stop="74384"/>
          <exon e_start="74462" e_stop="74586"/>
          <exon e_start="75286" e_stop="75335"/>
          <exon e_start="75488" e_stop="75553"/>
          <exon e_start="75652" e_stop="75700"/>
          <exon e_start="76490" e_stop="76572"/>
          <exon e_start="76672" e_stop="76751"/>
          <exon e_start="76848" e_stop="76852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGCGTATGTATGCATAATCATCAAGTTTTGTGTTGAAATTGATTTTTGATCTGATATGATAAAGATGTTTTAATTTGCAGGTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCGGTAAGCTTATTAGCCTTTTGTTTTTCTGGAGTTTCGCGTATATAAGAGATCTAGTGATAATCTGACGGAAATGAATTTGTGTTCATTGATAATGTAATGATTTTAGTTCAAATATATGAGTGCTTTTGATTGATTTTTTTGGATGTTAACAGCGCTAATCACGTCATGTTTTATTATATCGCTTTGCATACTGTTTTTGAGTTCTTATTGGAAGATGAAAAGCTTATCATATCATATTTATGAAATTCTGTTAGTTTGTTCTGCATATAATTGGAGTCTTTCTTTGTGGTGAACAGTTTCTTATGCCTCTTTCTTTGTTCCTAGTATGGGAAGTGAAATTTACTTCGTACTGTTATCATTTTTCAGTTGAAAGCATTTAGGAGAGGTTAGAATTTGTTTAATTTTTACACAGCCACACATAAACTCCCTTACTAGAACTGTAGATCATGAAGCGACTTGAAAACTTTGTATGTATCTATCATCTCCTCCCTGTTTAGCGAAATTTTTACTATTTTCAAGAAAAACAGACAATTTCTAAGTTTTCTCTAAATGAAGATAGACTGGTCCTTGTCTGCTGAGTACACATCCTCCTCATATGCCATATTTTGTTTACAACAAGTGCTTGTTTTGTCAGTTTCATTAACTTTGAAGATACTAAATCCTATCTTCTAATAATCTTTTGTGTTATATGGAGTACAGAAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAGGTGAGAGTACTTGTGTCGAAGATCTGTTCAAAATTTTGGGGAAGTTTTGTTTAATATTAGTTGTATTAGTAGTAGTAATGCAGAGGAGCAAAAATATTATGGTTTTTACGGATTTGAGTTGTGCGTAATTACCTTTTTATTCTGGACTGCAGCTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAGGTACAGAAAAGATGAAGACATGCCTCCTTTTACTATTTTGAACTTCAAATTCATTTGATGGGCTTGTCTTTAATTAGTAAATTCCACCTTTACATCAGGATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAACAAGGTTAGTCTTCTAAAAAGTTGGCTTGGCTGATCTATTACTTGAAATTAAGATAAAAGGTAATAAACTCAATTTTTCCTCTAATTCAAAATGTGAAGTTTACCCTCTGGGATTCTTCTCATTTGATTGAACAGGTAACCTTATCAGTATCACAAATTGACAAGGATCCTCATCCTCTTGTAGGGAAGGAATCCATGAGAATAGAAGATAAAAATAATGAAAAATAGCTAGCTTGTTTAAGATTTAACCTTACTGGCACCTGAGGTGCGAATGGAATATTGAGTTGAACTTGATTTAGTGCATAAAATCAAGTGGAGCCTCATCTATCCTAGTTGCTTCAATTATCCTCATTATGCCATATTCTGTGCCTGATTATTGTTGTTGCATCATTTTGTTTTGAACAACTTGAATATTATTTTCTTTTACTTGGTTCTGCATCTATGTAGAAGTGATGTCAATAACCTTGGAGATGTCTCTTTGCTAATTTGCACTGGTTGCCTCCTAAACATGTTTTATGTGGGGTTCCCATTATTCTAAAGAAAATTTTGTGAAGGAAAATATATTCCAATCGGAGAGAGCTCTTGAATATTATGAACATTGAACTGGACTTGGTGATATCCTATTGCAAAAATTGTAAATATTGCTAAAACAACTGCCAGCTACCTTTGACTAATTAGAAGAATTGGCATGAATTTCTGAGAGGGCTCTACAACTCAGTGCTCTGATTTTGAAACATAATTCTCTGCATGTTGCTCATCACTTACTTTGTTCCATGTTATAATGCCTTTTTAGGTCCACCGCACCTGAGGGATGTTTTTTACAGAATGGGACTCTCTGATAAAGATATAGTAGCATTGTCTGGAGGACACACACTGGTATTTTGTCTCATGAATCTGCATTTAGATATTTAGATATTTCTCTCAAATGATAATGCTGTTTGTCTTAAAGTTCCTCTTTTGTGTTCACTGTTACAGGGAAGAGCACACCCAGAGAGATCTGGCTTTGAGGGCCCTTGGACTAAAGAGCCTTTGAAATTTGACAACTCATACTTTGTGTAAGATTAGTATATGGTGGAACCTCTTTTTTATTTCATCATTGTTAAAAGAATGATTTCATGACTACTTGCCTAAATGGTACAATGATCTCTTAGGGAGC</genome_strand>
        <mrna_strand>GAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGC.............................................................................GTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAG........................................................................................................................................................CTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAG..................................................................................................GATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACCGCACCTGAGGGATGTTTTTTACAGAATGGGACTCTCTGATAAAGATATAGTAGCATTGTCTGGAGGACACACACTG...................................................................................................GGAAGAGCACACCCAGAGAGATCTGGCTTTGAGGGCCCTTGGACTAAAGAGCCTTTGAAATTTGACAACTCATACTTTGT................................................................................................GGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725854" ref_strand="+" ref_description="SGN-E725854 [LA08CB01]">
      <seq>caaaaggcgaagatcatttggcataatatatagtttcagcgtaccattcatggcgccacaagtagatgagaaatatcgtgaagagataaacaaagcacgaatagaacttggaaatcttgtaaaatcgaaggagttcagtgctcctgatttccttcgtttagcgtacgcatcccaattcacaattgccaattctcatcataacgatgatgcagcaaatgctacttctactcatgatgccacaaaaaagaaaactcaatctgccaataataattctctcaacacaattgataaaatcaaggccaatcatcccataataacgtatcctgacctctatcagcttgctgggattgttgctgttaaagaacttggtggtatagacatcgagtttgtccctggtagaacggaatcattaattttaccagatgaaaactgccttcctgatgtcaaacaaagtccagaagaactaagaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtagcattatatggaggtctcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="79357" stop="81369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79657" g_stop="79943" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79944" i_stop="80074" i_length="131">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80075" g_stop="80124" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="337" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80125" i_stop="80238" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80239" g_stop="80304" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="403" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80305" i_stop="80835" i_length="531">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80836" g_stop="80884" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="452" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80885" i_stop="80984" i_length="100">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80985" g_stop="81069" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="537" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E725854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79657" e_stop="79943"/>
          <exon e_start="80075" e_stop="80124"/>
          <exon e_start="80239" e_stop="80304"/>
          <exon e_start="80836" e_stop="80884"/>
          <exon e_start="80985" e_stop="81069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTGGTAAGTTTATATTTCATATGAATCGATTGTTGGTGTATCTTTTTGAATTAGACTAAAAAAAGAAAGTAAGAGAAATAAATCGAAACAGAGGGAGTACTATGCACCTTCTTATTAATGCCTTTATATTGCAGATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAGGTGAGATATATATATACTTGTTGTATCAATAATAATTATCCGTTTTGTAATTTGCTAATTTAATTAACACCAGATGCATGCAAGCTAGTAATTGTTGAATATTTGGTACTGCAGCTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACGGTACGCAAAGGAAATATGAAAATTTATAATCCTATGTCATACAGTTTAAGAAAGACTTTTAAAAATTGTGATTTTAAACCTGTTTGACCGGGTGACTGTGAATCAAGGATAAGAAAGAGAATTTTAAAGTTAATATTTCTAATTATAGAAAGATAACATTATTTTAGGAACGGACTAAAATGAAAATTGTACCACATACATTGGGACAATGCTAATTAGTATACTACTCCTTCTGTCCCAATTTATATATGACACCTTTTATGTTTTGAGAGTCAAACAATATAAGTTTGACAGGAAATTTGCGCATGAAATCTTCAATTTTTTTGAAATGAAATTTATATATTTATAAACTACGTAAAATATACTACGAGTTATAATAATTGATAATTCAAAATGTTTAAAAGACCTGTGAAAAATTTAAGATCACAGATAGACTTGCTTGACTCTTGAAATCTGAAAAGTGACGTATAAACTTCTTTACCCTATTATTTATTTGAAACGCATCACTAAATTTTGCTACCTTTCTACCAGGAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAAGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACT</genome_strand>
        <mrna_strand>CAAAAGGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTG...................................................................................................................................ATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAG..................................................................................................................CTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAA....................................................................................................GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711085" ref_strand="+" ref_description="SGN-E711085 [FA57DH06]">
      <seq>acgcgaagatcatttggcataatatatagtttcagcgtaccattcatggcgccacaagtagatgagaaatatcgtgaagagataaacaaagcacgaatagaacttggaaatcttgtaaaatcgaaggagttcagtgctcctgatttccttcgtttagcgtacgcatcccaattcacaattgccgattctcatcataacgatgatgcagcaaatgctacttctactcatgatgccacaaaaaagaaaactcaatctgccaataataattctctcaacacaattgataaaatcaaggccaatcatcccataataacgtatcctgacctctatcagcttgctgggattgttgctgttaaagaacttggtggtatagacatcgagtttgtccctggtagaacggaatcattaattttaccagatgaaaactgccttcctgatgtcaaacaaccctcccccccccccccccaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtatcattatatggaggtctcagactggccacatctggagctcacgctacaaatttgaaattggaccactcatactttgtggacctccctcgacaagaagaagaatttaagtcccgcgcaaaaagctctgcttgatgatccggaatttcaccactgcgtgcaatgttatgcaacgcataaagaggatttctttgaggactatgaagacgcacacaagaagctccctgatcttggcttaccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="79361" stop="81923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79661" g_stop="79943" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79944" i_stop="80074" i_length="131">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80075" g_stop="80124" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="333" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80125" i_stop="80238" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80239" g_stop="80304" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="399" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80305" i_stop="80835" i_length="531">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80836" g_stop="80884" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="449" r_length="50" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80885" i_stop="80984" i_length="100">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80985" g_stop="81070" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="536" r_length="87" r_score="0.814"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81071" i_stop="81170" i_length="100">
            <donor d_prob="0.913" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81171" g_stop="81223" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="589" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81224" i_stop="81315" i_length="92">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81316" g_stop="81409" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="684" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81410" i_stop="81554" i_length="145">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81555" g_stop="81623" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="753" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E711085" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79661" e_stop="79943"/>
          <exon e_start="80075" e_stop="80124"/>
          <exon e_start="80239" e_stop="80304"/>
          <exon e_start="80836" e_stop="80884"/>
          <exon e_start="80985" e_stop="81070"/>
          <exon e_start="81171" e_stop="81223"/>
          <exon e_start="81316" e_stop="81409"/>
          <exon e_start="81555" e_stop="81623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTGGTAAGTTTATATTTCATATGAATCGATTGTTGGTGTATCTTTTTGAATTAGACTAAAAAAAGAAAGTAAGAGAAATAAATCGAAACAGAGGGAGTACTATGCACCTTCTTATTAATGCCTTTATATTGCAGATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAGGTGAGATATATATATACTTGTTGTATCAATAATAATTATCCGTTTTGTAATTTGCTAATTTAATTAACACCAGATGCATGCAAGCTAGTAATTGTTGAATATTTGGTACTGCAGCTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACGGTACGCAAAGGAAATATGAAAATTTATAATCCTATGTCATACAGTTTAAGAAAGACTTTTAAAAATTGTGATTTTAAACCTGTTTGACCGGGTGACTGTGAATCAAGGATAAGAAAGAGAATTTTAAAGTTAATATTTCTAATTATAGAAAGATAACATTATTTTAGGAACGGACTAAAATGAAAATTGTACCACATACATTGGGACAATGCTAATTAGTATACTACTCCTTCTGTCCCAATTTATATATGACACCTTTTATGTTTTGAGAGTCAAACAATATAAGTTTGACAGGAAATTTGCGCATGAAATCTTCAATTTTTTTGAAATGAAATTTATATATTTATAAACTACGTAAAATATACTACGAGTTATAATAATTGATAATTCAAAATGTTTAAAAGACCTGTGAAAAATTTAAGATCACAGATAGACTTGCTTGACTCTTGAAATCTGAAAAGTGACGTATAAACTTCTTTACCCTATTATTTATTTGAAACGCATCACTAAATTTTGCTACCTTTCTACCAGGAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAA-AGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGT-CCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTGGTATATGCATATATAGATCTGCATCAATATACTCATATTTCTCACACGTATATAAATGCTGTTTCGTCTTATCGTTCCTCTTCTCGGTTTGCTGCTACAGGCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGTGTAAGATTACTATACACCCAGACTTCTTCTATATTTCAACATTCATTACAAGGAAAAAAATGTCATATTTGCTTTTCCAAATGATATCTTAGGGACCT-CCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACGGTATTATAATAGCTCATGTCTATTCTCAAAGTTCAATTGTTGCAACTCATCATAAAACTCTTCAACATTATAAACATATCTACTGTGGACTGTGGCCCCTAAACAACTGTATTATCTCCAACTCAAAATGATTTTTCATATTCAGCATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATAT</genome_strand>
        <mrna_strand>ACGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCGATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTG...................................................................................................................................ATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAG..................................................................................................................CTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAACC....................................................................................................CTCCCCCCCCCCCCCCCAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTATCATTATATGGAGGTCTCAGACTG....................................................................................................GCCACATCTGGAGCTCACGCTACAAATTTGAAATTGGACCACTCATACTTTGT............................................................................................GGACCTCCCTCGACAAGAAGAAGAATTTAAGTCCCGCGCAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG.................................................................................................................................................CATAAAGAGGATTTCTTTGAGGACTATGAAGACGCACACAAGAAGCTCCCTGATCTTGGCTTACCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556025" ref_strand="+" ref_description="SGN-E556025 [cTSD-2-C5]">
      <seq>catacaaagtccagaagaactaacaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtagcattatatggaggtctcaaactggccacagctggagctcaggctacaaatttgaaattggacaactcatactttgtggacctcctcgacaagaagaagaatttaagtcccgcggaaaaagctctgcttgatgatccggaatttcaccactgcgtgcaatgttatgcaacgcataaagaggattgctttgaggactatgaagaggcacacaagaagctcgctgatcttggcttaccatattcagcatttatcaaatcaacattagaaaaaagtgcatcacaagtgaagaaggtgctggcggcacaaaaggctgttggagttggagttgctgttgcagccacggttgtaatattgagtttcttctatgtaatcaacaggaggactgctaagcattcgtcatatcagtaccagtaacattggtggtgaactcaattgaaagaaaagatatgaacagttggactccatggttcagctataataaatcttggatatctcctattaacctcagttgtaaacattcatcaaaattcaataaaaaaacttgaattccttttgagcaaaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="80680" stop="82246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80877" g_stop="80884" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80885" i_stop="80984" i_length="100">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80985" g_stop="81070" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="94" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81071" i_stop="81170" i_length="100">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81171" g_stop="81223" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="147" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81224" i_stop="81315" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81316" g_stop="81409" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="241" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81410" i_stop="81554" i_length="145">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81555" g_stop="81945" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="632" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="648"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E556025" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80877" e_stop="80884"/>
          <exon e_start="80985" e_stop="81070"/>
          <exon e_start="81171" e_stop="81223"/>
          <exon e_start="81316" e_stop="81409"/>
          <exon e_start="81555" e_stop="81945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAAGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTGGTATATGCATATATAGATCTGCATCAATATACTCATATTTCTCACACGTATATAAATGCTGTTTCGTCTTATCGTTCCTCTTCTCGGTTTGCTGCTACAGGCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGTGTAAGATTACTATACACCCAGACTTCTTCTATATTTCAACATTCATTACAAGGAAAAAAATGTCATATTTGCTTTTCCAAATGATATCTTAGGGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACGGTATTATAATAGCTCATGTCTATTCTCAAAGTTCAATTGTTGCAACTCATCATAAAACTCTTCAACATTATAAACATATCTACTGTGGACTGTGGCCCCTAAACAACTGTATTATCTCCAACTCAAAATGATTTTTCATATTCAGCATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAGA</genome_strand>
        <mrna_strand>CATACAAA....................................................................................................GTCCAGAAGAACTAACAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG....................................................................................................GCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGT............................................................................................GGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG.................................................................................................................................................CATAAAGAGGATTGCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCACGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551736" ref_strand="+" ref_description="SGN-E551736 [cTSB-1-K5]">
      <seq>caaacaaagtccagaagaactaagaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtagcattatatggaggtctcaaactggccacagctggagctcaggctacaaatttgaaattggacaactcatactttgtggacctcctcgacaagaagaagaatttaagtcccgcggaaaaagctctgcttgatgatccggaatttcaccactgcgtgcaatgttatgcaacgcataaagaggatttctttgaggactatgaagaggcacacaagaagctcgctgatcttggcttaccatattcagcatttatcaaatcaacattagaaaaaagtgcatcacaagtgaagaaggtgctggcggcacaaaaggctgttggagttggagttgctgttgcagccgcggttgtaatattgagtttcttctatgtaatcaacaggaggactgctaagcattcgtcatatcagtaccagtaacattggtggtgaactcaattgaaagaaaagatatgaacagttggactccatggttcagctataataaatcttggatatctcctattaacctcagttgtaaacattcatcaaaattcaataaaaaaacttgaattccttttgagcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="80683" stop="82246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80877" g_stop="80884" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80885" i_stop="80984" i_length="100">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80985" g_stop="81070" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="94" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81071" i_stop="81170" i_length="100">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81171" g_stop="81223" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="147" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81224" i_stop="81315" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81316" g_stop="81409" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="241" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81410" i_stop="81554" i_length="145">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81555" g_stop="81945" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="632" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="648"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E551736" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80877" e_stop="80884"/>
          <exon e_start="80985" e_stop="81070"/>
          <exon e_start="81171" e_stop="81223"/>
          <exon e_start="81316" e_stop="81409"/>
          <exon e_start="81555" e_stop="81945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAAGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTGGTATATGCATATATAGATCTGCATCAATATACTCATATTTCTCACACGTATATAAATGCTGTTTCGTCTTATCGTTCCTCTTCTCGGTTTGCTGCTACAGGCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGTGTAAGATTACTATACACCCAGACTTCTTCTATATTTCAACATTCATTACAAGGAAAAAAATGTCATATTTGCTTTTCCAAATGATATCTTAGGGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACGGTATTATAATAGCTCATGTCTATTCTCAAAGTTCAATTGTTGCAACTCATCATAAAACTCTTCAACATTATAAACATATCTACTGTGGACTGTGGCCCCTAAACAACTGTATTATCTCCAACTCAAAATGATTTTTCATATTCAGCATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAGA</genome_strand>
        <mrna_strand>CAAACAAA....................................................................................................GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG....................................................................................................GCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGT............................................................................................GGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG.................................................................................................................................................CATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552258" ref_strand="+" ref_description="SGN-E552258 [cTSB-3-F21]">
      <seq>caaacaaagtccagaagaactaagaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtagcattatatggaggtctcaaactggccacagctggagctcaggctacaaatttgaaattggacaactcatactttgtggacctcctcgacaagaagaagaatttaagtcccgcggaaaaagctctgcttgatgatccggaatttcaccactgcgtgcaatgttatgcaacgcataaagaggatttctttgaggactatgaagaggcacacaagaagctcgctgatcttggcttaccatattcagcatttatcaaatcaacattagaaaaaagtgcatcacaagtgaagaaggtgctggcggcacaaaaggctgttggagttggagttgctgttgcagccgcggttgtaatattgagtttcttctatgtaatcaacaggaggactgctaagcattcgtcatatcagtaccagtaacattggtggtgaactcaattgaaagaaaagatatgaacagttggactccatggttcagctataataaatcttggatatctcctattaacctcagttgtaaacattcatcaaaattcaataaaaaaacttgaattccttttgagcaaaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="80683" stop="82246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80877" g_stop="80884" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80885" i_stop="80984" i_length="100">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80985" g_stop="81070" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="94" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81071" i_stop="81170" i_length="100">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81171" g_stop="81223" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="147" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81224" i_stop="81315" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81316" g_stop="81409" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="241" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81410" i_stop="81554" i_length="145">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81555" g_stop="81945" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="632" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="649"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E552258" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80877" e_stop="80884"/>
          <exon e_start="80985" e_stop="81070"/>
          <exon e_start="81171" e_stop="81223"/>
          <exon e_start="81316" e_stop="81409"/>
          <exon e_start="81555" e_stop="81945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAAGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTGGTATATGCATATATAGATCTGCATCAATATACTCATATTTCTCACACGTATATAAATGCTGTTTCGTCTTATCGTTCCTCTTCTCGGTTTGCTGCTACAGGCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGTGTAAGATTACTATACACCCAGACTTCTTCTATATTTCAACATTCATTACAAGGAAAAAAATGTCATATTTGCTTTTCCAAATGATATCTTAGGGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACGGTATTATAATAGCTCATGTCTATTCTCAAAGTTCAATTGTTGCAACTCATCATAAAACTCTTCAACATTATAAACATATCTACTGTGGACTGTGGCCCCTAAACAACTGTATTATCTCCAACTCAAAATGATTTTTCATATTCAGCATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAGA</genome_strand>
        <mrna_strand>CAAACAAA....................................................................................................GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG....................................................................................................GCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGT............................................................................................GGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG.................................................................................................................................................CATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552516" ref_strand="+" ref_description="SGN-E552516 [cTSB-4-C5]">
      <seq>caaacaaagtccagaagaactaagaaatgtcttccgaaaagtgaaaatctctgatcccaagcatatagtagcattatatggaggtctcaaactggccacagctggagctcaggctacaaatttgaaattggacaactcatactttgtggacctcctcgacaagaagaagaatttaagtcccgcggaaaaagctctgcttgatgatccggaatttcaccactgcgtgcaatgttatgcaacgcataaagaggatttctttgaggactatgaagaggcacacaagaagctcgctgatcttggcttaccatattcagcatttatcaaatcaacattagaaaaaagtgcatcacaagtgaagaaggtgctggcggcacaaaaggctgttggagttggagttgctgttgcagccgcggttgtaatattgagtttcttctatgtaatcaacaggaggactgctaagcattcgtcatatcagtaccagtaacattggtggtgaactcaattgaaagaaaagatatgaacagttggactccatggttcagctataataaatcttggatatctcctattaacctcagttgtaaacattcatcaaaattcaataaaaaaacttgaattccttttgagcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="80683" stop="82246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80877" g_stop="80884" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80885" i_stop="80984" i_length="100">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80985" g_stop="81070" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="94" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81071" i_stop="81170" i_length="100">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81171" g_stop="81223" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="147" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81224" i_stop="81315" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81316" g_stop="81409" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="241" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81410" i_stop="81554" i_length="145">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81555" g_stop="81945" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="632" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="649"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E552516" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80877" e_stop="80884"/>
          <exon e_start="80985" e_stop="81070"/>
          <exon e_start="81171" e_stop="81223"/>
          <exon e_start="81316" e_stop="81409"/>
          <exon e_start="81555" e_stop="81945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAAGTAAGTTATATGTAAATTAGCTGATCTATATATCATTTTGAAGTTGCTATATTCCTCCATACGTCTTGTTGTTTACTGTGTTTCGATGCTGTTTTTTCAGGTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTGGTATATGCATATATAGATCTGCATCAATATACTCATATTTCTCACACGTATATAAATGCTGTTTCGTCTTATCGTTCCTCTTCTCGGTTTGCTGCTACAGGCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGTGTAAGATTACTATACACCCAGACTTCTTCTATATTTCAACATTCATTACAAGGAAAAAAATGTCATATTTGCTTTTCCAAATGATATCTTAGGGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACGGTATTATAATAGCTCATGTCTATTCTCAAAGTTCAATTGTTGCAACTCATCATAAAACTCTTCAACATTATAAACATATCTACTGTGGACTGTGGCCCCTAAACAACTGTATTATCTCCAACTCAAAATGATTTTTCATATTCAGCATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAGA</genome_strand>
        <mrna_strand>CAAACAAA....................................................................................................GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG....................................................................................................GCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGT............................................................................................GGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG.................................................................................................................................................CATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230043" ref_strand="+" ref_description="SGN-E230043 [cLEL-33-J9](-)">
      <seq>agctcgctgatcttggcttaccatattcagcatttatcaaatcaacattagaaaaaagtgcatcacaagtgaagaaggtgctggcggcacaaaaggctgttggagttggagttgctgttgcagccgcggttgtaatattgagtttcttctatgtaatcaacaggaggactgctaagcattcgtcatatcagtaccagtaacattggtggtgaactcaattgaaagaaaagatatgaacagttggactccatggttcagctataataaatcttggatatctcctattaacctcagttgtaaacattcatcaaaattcaataaaaaaacttgaattccttttgagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="+" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="81298" stop="82246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81598" g_stop="81958" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="+" ref_id="SGN-E230043" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81598" e_stop="81958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAGAATTGTTCACAAAT</genome_strand>
        <mrna_strand>AGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719912" ref_strand="+" ref_description="SGN-E719912 [FC09AH10]">
      <seq>gggcgattggcggccaatcggccgaattgggaggagaaacccatttcagccatgaaggacgattacgagatcgaagaaaagaagcaagctgctgcagatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcaaacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="89340" stop="40498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89040" g_stop="89001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="69" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89000" i_stop="87301" i_length="1700">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87300" g_stop="87187" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="183" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86086" g_stop="85790" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="480" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85789" i_stop="84661" i_length="1129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84660" g_stop="84618" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="523" r_length="43" r_score="0.698"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E719912" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89040" e_stop="89001"/>
          <exon e_start="87300" e_stop="87187"/>
          <exon e_start="86086" e_stop="85790"/>
          <exon e_start="84660" e_stop="84618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGAAACCCATTTCAGCCATGAAGGACGATTACGAGGTATCGAACTTTCTGCTTTCTTCCATTATCCTGGGTCTGGTATCCTTTTGCTTTGTAGCCCTAATTTTTTAATTTTTGTTGAGTTTTTAGTTGCGACTTTAGGTCTTTTGCTTTTGATTTTAATAGACTTTCCACATTGTTTGTGGTTTTTTGAAGCTTAATCGGAGCTTCTTATTGGGTTTTTCTTTCAAGTCTTTAGCAAGTAATTTAGTCCTTGTATCGGATGCAGTTGAACAATTGTAACAATTTCTTGTTTTGGTGGAAAAAGTGACATACAAGATTACGATTAAGTCGGTATCTTTGATCAATTTGAACCAGTATTACCAAACATAAAGTAGTTATAAGAATGGAAGAAAGAATCTTGAACCTTGGATTTTGAAATCCCGTGCCCTTGTTGTTGGTAGTATTTAAGTCTAGAATGAATATCAAAACTGGGGAGAAATCAAATTTATCAAAATTTGATGATCATTCCAAATGCTGAAATTCTGAATATTATTTAGTGATATCTCAATTGGTTTATGTTTGTAATCAATCAATTCTTTGAGTAATTAAGGAGCTTCTTCTTGCATCTCTCTCTTTTTTTTTAAAGAAAGTAGTGTTATGTTGTCTTTGTTTAATTATGGTGTCATCATGTCTAGCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTACCAACACAGGGGTACTGGGTAATTCTGCATATCAAGGTTTAGACGACAAATGTGAAGAAATCACCTAGTTTGATTAAGCAAGTAGTGAATATTGATTTCTAGACTCTAGTTTTGCATTCTGTGGCAAAAGATTACCTCCTTAAAGGCAATTGCAATCAGTGAAGGCTTAAGAAGTGGCAAATCTACCCTTAATCTTTCTTTAAAGCAGGAACGTAAAGAAAAGGAGGTATATTCCTCAGATTGTAACTTTGACTAAGTTTGGTAAAGTGCTAGCTAAAGAAACAAAAAAAAGGAATCGGATCAAAGTGAAAAATGATAATCTAGAGTGAACCTTTTTTGTCCATGAAATAATTTTGTATGGGAAATTTTGATTGTTAATAATGTTGAAGTGGAAATCCCCACTAAATGAGAGTTTTCTTCATATCTCTGAGGATTGATGGAAGTGTTTGACTGTGAAATATAGAGATATAGGCATATATATTTTATTCTCAGAAATAGTCTCTTATTTTTACTTAGTTTTTGGTGTACCGTGAAGTTCTTATTAGTTCAGAAGGTTGTGTGACGTTCATACAGATGCTTATCATTGTGGGTTTCTCTATTTTTCTTGTATTAAGCTTGTTTACAGGAGTTTTTACATTAATTAAATTATTTACCTTATACAAAAAAATCTATTCAAGATTAGTTTGATTGTTAATGATTTTTTAAGCATTTGCTGTCATTTGTCTTTTCAATACATGTATTTGGAATGCCACTGGTGTGTAAATCAATGAGTTAACCCATCTAAGATGGAAAATAATGTAAGATATTATTGGCGACTTCAGTGAACTGTTAATGTTCTCCTTATTTTTGGAGTGACAACTGATTGCTGAAAAGTTAAAGTTTGATTACCATTTACCATGCAATGTGCAAGAGACTTTTTGCAGTTTTTATTTCTATATTGTGTTATTAGCTTTAACTCTCATTTACAATTCCAGATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATTGCAAGTCAGCAGGAACAATATCCTTTCGTCCTTTCAAACAAAAATGGAGAACTGTCATTGTTTCTTCCCCTTTTGCTCGTTAAGCTTATCTGCGCAGTTTTCACTTGTCATTGCAGTGAATTACATAAATTAAATGGGTCTTGGGCTTTAGCTCTATTAGATGGGAGCGCACAGTGTTTTAAAAGGAGTAAGCTTAGAGTGGAGTGTGGAGTGTGGAGTGTGGACTTTGGAGGAATATATCTACGGGTCACGATTTGAAATTGATGTGTTTTGAATTTTAACATTTTTGAATTAATAAATCGTAAAATATTTTTAAGATACGTAAAATTTTAACCAAGACTACCAGGTCAATCGGCATCCATCTTCCGCCCTCGTGTAATAGACGGGAGCATAAACTCCAAGCCTAAAATAAAATATCTTTTCTTTTGTTTTCCATATACAATTTTAAAAGAAATTAAAATCTAATAAATAGATAAGAGATGATATTTATAATGATATTTTAAGTCAATAATTCTTAGTGACCGATCCCTCCTATATATATATATATGATACAGCTTGTCTCTTTATAAATTTTAATTAAAAATTGTTTTTGTAAAAGAAATTAGGATCTGCAATGTATTATAATATTTGTGCGACCATAAATGGTCTTATTAAAGATACGATTCGCTGTTTAAAATTAATTTATTTCAAATATAAAAATATATCTTTTTAAAAACTGGTGTCATGTAAATTCTAATGGGAGGATACACCCGGTGTTTATGCTACCTAATAGCAGTGGTAGATCAAGAACTACAAATAATTCTAGAGGCCTTCATTTGACTTGAGCTAATTTCAGTGCCACATGCCTCTTAAGTATTTTTCTTCCAAACAAAAAAACTGTACTAGTATTTTTATTTGATGTCTATTTTTCTAAAATTTTGAGATAAGAAAAGGTGAAAAATTATCAATTCTAAGAACCAAGTCTTTTTATTTTAATAGTCTCTTAAGATTTGATTTTTCTTTTTTTATTTTAAAGTATATATCAGAATTTATATTTTTTTAATTAACATATTTTAATTCTTGTCGTAAATAATACAAAAATAATATATACCTATAAAAGAAAAAATCAAAAACAAA</genome_strand>
        <mrna_strand>GGAGGAGAAACCCATTTCAGCCATGAAGGACGATTACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAAACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225297" ref_strand="+" ref_description="SGN-E225297 [cLEL-17-M9](-)">
      <seq>gagatcgaaaaaaaaagcaagcttctgcaaatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtaccttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcatgacatgagcacacacattttagttcttcttgatcactactcctcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="87602" stop="40502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87303" g_stop="87187" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86086" g_stop="85734" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="469" r_length="353" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85733" i_stop="85618" i_length="116">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.839" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85617" g_stop="85613" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="474" r_length="5" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E225297" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87303" e_stop="87187"/>
          <exon e_start="86086" e_stop="85734"/>
          <exon e_start="85617" e_stop="85613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATTGCAAGTCAGCAGGAACAATATCCTTTCGTCCTTTCAAACAAAAATGGAGAACTGTCATTGTTTCTTCCCCTTTTGCTCGTTAAGCTTATCTGCGCAGTTTTCACTTGTCATTGCAGTGAAT</genome_strand>
        <mrna_strand>GAGATCGAA-AAAAAAAGCAAGCTTCTGCAAATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTACCTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTACTCCTCAAAAAAAAAAA....................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312168" ref_strand="+" ref_description="SGN-E312168 [cTOA-11-O4]">
      <seq>ccatttcagccatgaaggacgattacgagatcgaagaaaagaagcaagctgctgcagatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcatgacatgagcacacacattttagttcttcttgatcactattactcaacttccaattgcaagtcagcaggaacaatatcctttcgtcctttcaaacaaaaatggagaactgtcattgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="89329" stop="85371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89029" g_stop="89001" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89000" i_stop="87301" i_length="1700">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87300" g_stop="87187" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="143" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86086" g_stop="85675" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="555" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="569"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E312168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89029" e_stop="89001"/>
          <exon e_start="87300" e_stop="87187"/>
          <exon e_start="86086" e_stop="85675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCAGCCATGAAGGACGATTACGAGGTATCGAACTTTCTGCTTTCTTCCATTATCCTGGGTCTGGTATCCTTTTGCTTTGTAGCCCTAATTTTTTAATTTTTGTTGAGTTTTTAGTTGCGACTTTAGGTCTTTTGCTTTTGATTTTAATAGACTTTCCACATTGTTTGTGGTTTTTTGAAGCTTAATCGGAGCTTCTTATTGGGTTTTTCTTTCAAGTCTTTAGCAAGTAATTTAGTCCTTGTATCGGATGCAGTTGAACAATTGTAACAATTTCTTGTTTTGGTGGAAAAAGTGACATACAAGATTACGATTAAGTCGGTATCTTTGATCAATTTGAACCAGTATTACCAAACATAAAGTAGTTATAAGAATGGAAGAAAGAATCTTGAACCTTGGATTTTGAAATCCCGTGCCCTTGTTGTTGGTAGTATTTAAGTCTAGAATGAATATCAAAACTGGGGAGAAATCAAATTTATCAAAATTTGATGATCATTCCAAATGCTGAAATTCTGAATATTATTTAGTGATATCTCAATTGGTTTATGTTTGTAATCAATCAATTCTTTGAGTAATTAAGGAGCTTCTTCTTGCATCTCTCTCTTTTTTTTTAAAGAAAGTAGTGTTATGTTGTCTTTGTTTAATTATGGTGTCATCATGTCTAGCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTACCAACACAGGGGTACTGGGTAATTCTGCATATCAAGGTTTAGACGACAAATGTGAAGAAATCACCTAGTTTGATTAAGCAAGTAGTGAATATTGATTTCTAGACTCTAGTTTTGCATTCTGTGGCAAAAGATTACCTCCTTAAAGGCAATTGCAATCAGTGAAGGCTTAAGAAGTGGCAAATCTACCCTTAATCTTTCTTTAAAGCAGGAACGTAAAGAAAAGGAGGTATATTCCTCAGATTGTAACTTTGACTAAGTTTGGTAAAGTGCTAGCTAAAGAAACAAAAAAAAGGAATCGGATCAAAGTGAAAAATGATAATCTAGAGTGAACCTTTTTTGTCCATGAAATAATTTTGTATGGGAAATTTTGATTGTTAATAATGTTGAAGTGGAAATCCCCACTAAATGAGAGTTTTCTTCATATCTCTGAGGATTGATGGAAGTGTTTGACTGTGAAATATAGAGATATAGGCATATATATTTTATTCTCAGAAATAGTCTCTTATTTTTACTTAGTTTTTGGTGTACCGTGAAGTTCTTATTAGTTCAGAAGGTTGTGTGACGTTCATACAGATGCTTATCATTGTGGGTTTCTCTATTTTTCTTGTATTAAGCTTGTTTACAGGAGTTTTTACATTAATTAAATTATTTACCTTATACAAAAAAATCTATTCAAGATTAGTTTGATTGTTAATGATTTTTTAAGCATTTGCTGTCATTTGTCTTTTCAATACATGTATTTGGAATGCCACTGGTGTGTAAATCAATGAGTTAACCCATCTAAGATGGAAAATAATGTAAGATATTATTGGCGACTTCAGTGAACTGTTAATGTTCTCCTTATTTTTGGAGTGACAACTGATTGCTGAAAAGTTAAAGTTTGATTACCATTTACCATGCAATGTGCAAGAGACTTTTTGCAGTTTTTATTTCTATATTGTGTTATTAGCTTTAACTCTCATTTACAATTCCAGATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATTGCAAGTCAGCAGGAACAATATCCTTTCGTCCTTTCAAACAAAAATGGAGAACTGTCATT</genome_strand>
        <mrna_strand>CCATTTCAGCCATGAAGGACGATTACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATTGCAAGTCAGCAGGAACAATATCCTTTCGTCCTTTCAAACAAAAATGGAGAACTGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225467" ref_strand="+" ref_description="SGN-E225467 [cLEL-17-M9](-)">
      <seq>gagatcgaaaaaagaagcaagctgctgcagatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcatgacatgagcacacacattttagttcttcttgatcgctattactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="87602" stop="85443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87303" g_stop="87187" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86086" g_stop="85734" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="469" r_length="353" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E225467" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87303" e_stop="87187"/>
          <exon e_start="86086" e_stop="85734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATT</genome_strand>
        <mrna_strand>GAGATCGAA-AAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCGCTATTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348178" ref_strand="+" ref_description="SGN-E348178 [cTOF-27-D8]">
      <seq>tgcaagctgctggcagatggttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcatgacatgagcacacacattttagttcttcttgatcactattactcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="87586" stop="85443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87287" g_stop="87187" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86086" g_stop="85734" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="456" r_length="353" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E348178" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87287" e_stop="87187"/>
          <exon e_start="86086" e_stop="85734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGCTGCTG-CAGAT-GTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATT</genome_strand>
        <mrna_strand>TGCAAGCTGCTGGCAGATGGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311325" ref_strand="+" ref_description="SGN-E311325 [cLEZ-18-K9]">
      <seq>aaacccatttcagccatgaaggacgattacgagatcgaagaaaagaagcaagctgctgcagatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcatgacatgagcacacacattttagttcttcttgatcacttnnnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="89333" stop="85452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89033" g_stop="89001" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89000" i_stop="87301" i_length="1700">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87300" g_stop="87187" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="147" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86086" g_stop="85736" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="497" r_length="350" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E311325" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89033" e_stop="89001"/>
          <exon e_start="87300" e_stop="87187"/>
          <exon e_start="86086" e_stop="85736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCATTTCAGCCATGAAGGACGATTACGAGGTATCGAACTTTCTGCTTTCTTCCATTATCCTGGGTCTGGTATCCTTTTGCTTTGTAGCCCTAATTTTTTAATTTTTGTTGAGTTTTTAGTTGCGACTTTAGGTCTTTTGCTTTTGATTTTAATAGACTTTCCACATTGTTTGTGGTTTTTTGAAGCTTAATCGGAGCTTCTTATTGGGTTTTTCTTTCAAGTCTTTAGCAAGTAATTTAGTCCTTGTATCGGATGCAGTTGAACAATTGTAACAATTTCTTGTTTTGGTGGAAAAAGTGACATACAAGATTACGATTAAGTCGGTATCTTTGATCAATTTGAACCAGTATTACCAAACATAAAGTAGTTATAAGAATGGAAGAAAGAATCTTGAACCTTGGATTTTGAAATCCCGTGCCCTTGTTGTTGGTAGTATTTAAGTCTAGAATGAATATCAAAACTGGGGAGAAATCAAATTTATCAAAATTTGATGATCATTCCAAATGCTGAAATTCTGAATATTATTTAGTGATATCTCAATTGGTTTATGTTTGTAATCAATCAATTCTTTGAGTAATTAAGGAGCTTCTTCTTGCATCTCTCTCTTTTTTTTTAAAGAAAGTAGTGTTATGTTGTCTTTGTTTAATTATGGTGTCATCATGTCTAGCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTACCAACACAGGGGTACTGGGTAATTCTGCATATCAAGGTTTAGACGACAAATGTGAAGAAATCACCTAGTTTGATTAAGCAAGTAGTGAATATTGATTTCTAGACTCTAGTTTTGCATTCTGTGGCAAAAGATTACCTCCTTAAAGGCAATTGCAATCAGTGAAGGCTTAAGAAGTGGCAAATCTACCCTTAATCTTTCTTTAAAGCAGGAACGTAAAGAAAAGGAGGTATATTCCTCAGATTGTAACTTTGACTAAGTTTGGTAAAGTGCTAGCTAAAGAAACAAAAAAAAGGAATCGGATCAAAGTGAAAAATGATAATCTAGAGTGAACCTTTTTTGTCCATGAAATAATTTTGTATGGGAAATTTTGATTGTTAATAATGTTGAAGTGGAAATCCCCACTAAATGAGAGTTTTCTTCATATCTCTGAGGATTGATGGAAGTGTTTGACTGTGAAATATAGAGATATAGGCATATATATTTTATTCTCAGAAATAGTCTCTTATTTTTACTTAGTTTTTGGTGTACCGTGAAGTTCTTATTAGTTCAGAAGGTTGTGTGACGTTCATACAGATGCTTATCATTGTGGGTTTCTCTATTTTTCTTGTATTAAGCTTGTTTACAGGAGTTTTTACATTAATTAAATTATTTACCTTATACAAAAAAATCTATTCAAGATTAGTTTGATTGTTAATGATTTTTTAAGCATTTGCTGTCATTTGTCTTTTCAATACATGTATTTGGAATGCCACTGGTGTGTAAATCAATGAGTTAACCCATCTAAGATGGAAAATAATGTAAGATATTATTGGCGACTTCAGTGAACTGTTAATGTTCTCCTTATTTTTGGAGTGACAACTGATTGCTGAAAAGTTAAAGTTTGATTACCATTTACCATGCAATGTGCAAGAGACTTTTTGCAGTTTTTATTTCTATATTGTGTTATTAGCTTTAACTCTCATTTACAATTCCAGATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAA</genome_strand>
        <mrna_strand>AAACCCATTTCAGCCATGAAGGACGATTACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACT-TNNNAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342552" ref_strand="+" ref_description="SGN-E342552 [cTOF-7-C7]">
      <seq>agaaacccatttcagccatgaaggacgattacgagatcgaagaaaagaagcaagctgctgcagatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcatgacatgagcacacacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="89335" stop="85473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89035" g_stop="89001" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89000" i_stop="87301" i_length="1700">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87300" g_stop="87187" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="149" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86086" g_stop="85774" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="462" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="473"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E342552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89035" e_stop="89001"/>
          <exon e_start="87300" e_stop="87187"/>
          <exon e_start="86086" e_stop="85774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCCATTTCAGCCATGAAGGACGATTACGAGGTATCGAACTTTCTGCTTTCTTCCATTATCCTGGGTCTGGTATCCTTTTGCTTTGTAGCCCTAATTTTTTAATTTTTGTTGAGTTTTTAGTTGCGACTTTAGGTCTTTTGCTTTTGATTTTAATAGACTTTCCACATTGTTTGTGGTTTTTTGAAGCTTAATCGGAGCTTCTTATTGGGTTTTTCTTTCAAGTCTTTAGCAAGTAATTTAGTCCTTGTATCGGATGCAGTTGAACAATTGTAACAATTTCTTGTTTTGGTGGAAAAAGTGACATACAAGATTACGATTAAGTCGGTATCTTTGATCAATTTGAACCAGTATTACCAAACATAAAGTAGTTATAAGAATGGAAGAAAGAATCTTGAACCTTGGATTTTGAAATCCCGTGCCCTTGTTGTTGGTAGTATTTAAGTCTAGAATGAATATCAAAACTGGGGAGAAATCAAATTTATCAAAATTTGATGATCATTCCAAATGCTGAAATTCTGAATATTATTTAGTGATATCTCAATTGGTTTATGTTTGTAATCAATCAATTCTTTGAGTAATTAAGGAGCTTCTTCTTGCATCTCTCTCTTTTTTTTTAAAGAAAGTAGTGTTATGTTGTCTTTGTTTAATTATGGTGTCATCATGTCTAGCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTAGGCACACTTCTACTATTCCACTGGTTACCCTACTACCTCTTACCAACACAGGGGTACTGGGTAATTCTGCATATCAAGGTTTAGACGACAAATGTGAAGAAATCACCTAGTTTGATTAAGCAAGTAGTGAATATTGATTTCTAGACTCTAGTTTTGCATTCTGTGGCAAAAGATTACCTCCTTAAAGGCAATTGCAATCAGTGAAGGCTTAAGAAGTGGCAAATCTACCCTTAATCTTTCTTTAAAGCAGGAACGTAAAGAAAAGGAGGTATATTCCTCAGATTGTAACTTTGACTAAGTTTGGTAAAGTGCTAGCTAAAGAAACAAAAAAAAGGAATCGGATCAAAGTGAAAAATGATAATCTAGAGTGAACCTTTTTTGTCCATGAAATAATTTTGTATGGGAAATTTTGATTGTTAATAATGTTGAAGTGGAAATCCCCACTAAATGAGAGTTTTCTTCATATCTCTGAGGATTGATGGAAGTGTTTGACTGTGAAATATAGAGATATAGGCATATATATTTTATTCTCAGAAATAGTCTCTTATTTTTACTTAGTTTTTGGTGTACCGTGAAGTTCTTATTAGTTCAGAAGGTTGTGTGACGTTCATACAGATGCTTATCATTGTGGGTTTCTCTATTTTTCTTGTATTAAGCTTGTTTACAGGAGTTTTTACATTAATTAAATTATTTACCTTATACAAAAAAATCTATTCAAGATTAGTTTGATTGTTAATGATTTTTTAAGCATTTGCTGTCATTTGTCTTTTCAATACATGTATTTGGAATGCCACTGGTGTGTAAATCAATGAGTTAACCCATCTAAGATGGAAAATAATGTAAGATATTATTGGCGACTTCAGTGAACTGTTAATGTTCTCCTTATTTTTGGAGTGACAACTGATTGCTGAAAAGTTAAAGTTTGATTACCATTTACCATGCAATGTGCAAGAGACTTTTTGCAGTTTTTATTTCTATATTGTGTTATTAGCTTTAACTCTCATTTACAATTCCAGATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACAC</genome_strand>
        <mrna_strand>AGAAACCCATTTCAGCCATGAAGGACGATTACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732677" ref_strand="+" ref_description="SGN-E732677 [LB02DD01]">
      <seq>cgatgattacgagatcgaagaaaagaagcaagctgctgcagatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagtttgctgtctggaaaaatatactatcagttgctgtactgcttgaggcatgtaggatcttgttcattttgtcagggtcttcggttatgcaatctctgtcgcatttatgttttttaagacaattatttctttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="87607" stop="85485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87300" g_stop="87187" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="127" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86086" g_stop="85780" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="434" r_length="307" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E732677" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87300" e_stop="87187"/>
          <exon e_start="86086" e_stop="85780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGC</genome_strand>
        <mrna_strand>ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313563" ref_strand="+" ref_description="SGN-E313563 [cTOA-12-H7]">
      <seq>catttcagccattaaggacgattacgagatctaagaaaagaagcaagctgctgcagatgttttgtttcaatattcaaattttgttatggcctgtattggtaatcaagttcggccttgtgacttgagactgcatttgatgaaggaagtttcaggactgcctacttctttgaagcgcgaacaccatccaacatcttctcctgatgtaatgggagagtcctcaagctcaggtatctcaagactggacaaagcagacagtttccgaggtccttagatttgtgaagtgcattgttcgctatgtttctagttagctgtctggaaaaatatactatcagttgctgtactgcttgaggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="87610" stop="85575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87300" g_stop="87187" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="142" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86086" g_stop="85875" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="354" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E313563" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87300" e_stop="87187"/>
          <exon e_start="86086" e_stop="85875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAGGTAAGATGCATTAATGACTTTTTCTTGCTATATCAGTGTCACATGGGAACAATCTCATGAGTATAGTTGTGTGATAAGCTCTCAAGTTTGAGGACCCCAGCCATGTTATTCTTTCTTACTTGTATTCTTCTGTAAGTTGCCATCTTTTGCTTAATGTAAACCGTTGCATGAAAACCTAACAATGAAAGGACGCTGCATGAAACCCTATGCTACAGTTTTTGTTGGGCAATTTGGTTAATTAATGTGTGTATTCGCGATAATCTCATTTCTTTCGACGGAGTGATTATTTCGCTTTGGAAGGAAAAAAGCATGTCAAATAAGGTTCATTCCAACTTAGAATGAAACTGAATAAAACAATAAAAGATACAGGTAATTGTTCTTTCCAACAAAAATTTCATTTATTATGTCATCCAAATTTGATAAGAATTGTTTAATAGGTCTATTAAATGGTGCATCCTAATACGTTCATTTATCTAGGGTTTTGTAGTTCATGATTCATCTTCATCCTCCATGTTGATACTTTATGTTGCAGTGAAATTTTAAACTGTCCTTTGCTAAATGTAAGACTGGGGGCTGACTAACAGTAAACAGCAATTGCTACTGTGGCCATCTCTGAAAGTGAAGCACTGTATTGTGTCTGTAACGATTGAATTGAAGCATTTACCTTTTTCTTCTTATAACCCCTAAGATGAGATAACTTCAGAGGAAATAGTTCTTAGGGTTTTATTTGCTGTGGTGCTTCACCTGAGCACACATGCCTGCATTTAAGATTAAAATAGTGAAGTCACTGCATTATAAAGAGGAAATATTACATCTGCACCTGATATTTCTGTCTGAAGGAATCATAGCAATAATCTATATCTAAGGCCTGTATTTCCGGTGGCAACTGGTTTTGATTTGGCCAGGGTTGTTGATTTTCTCAAATTTTGATTCCTTCAGATAATGGTATAAATAATTGCTTGCTATTGAATGTTGAGTGGAAAATCAGTCATCTGAATTCTTATCGAGTGCAAACATTGCAACATGACATTCTCTATCCTAATCATGAAATTGTGTAAATTTAGCCTAAAGAAATGTTACTCCTTCTAATTTTCTTTCAGGAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATG</genome_strand>
        <mrna_strand>ATCTAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTAGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301133" ref_strand="-" ref_description="SGN-E301133 [cLEW-22-O19]">
      <seq>cttgatcctcatggattgtcaaatgccgaagatggatggttatgaagcaacaaaggcaattagaaaatcagaaatggggacaggaacacacattcccattgttgcactaacagctcatgcaatgtcatcagatgaagcaaaatgcttacaggttggtatggatgcttatttaaccaagcccatagacagcaagttgatggtttccaccattctttccttgactaaaagaaaagcctaaccatcatacctctctatcaaaaacggaagaaacaaacaaaaatggaagagctcagaaaactcatgagcttaaagcagagctttgataagcaatagtattgcaatctgtacaggaaactaactttgtaactgttctatagcttatgcaaaagtctcaataagtttatcagaaaaaaaaaaaaaaaaaaaaaaactcgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="93898" stop="40484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93598" g_stop="93577" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93576" i_stop="93509" i_length="68">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93508" g_stop="93124" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="407" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93123" i_stop="91648" i_length="1476">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91647" g_stop="91612" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="443" r_length="36" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E301133" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301133" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93598" e_stop="93577"/>
          <exon e_start="93508" e_stop="93124"/>
          <exon e_start="91647" e_stop="91612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCCTCATGGATTGTCAAGTAAGTAGAGCATGAATTTACGGTTATAAGAAACTGCTGTGTTTGCTGATATAATTGCTTCTTAACAGATGCCGAAGATGGATGGTTATGAAGCAACAAAGGCAATTAGAAAATCAGAAATGGGGACAGGAACACACATTCCCATTGTTGCACTAACAGCTCATGCAATGTCATCAGATGAAGCAAAATGCTTACAGGTTGGTATGGATGCTTATTTAACCAAGCCCATAGACAGCAAGTTGATGGTTTCCACCATTCTTTCCTTGACTAAAAGAAAAGCCTAACCATCATACCTCTCTATCAAAAACGGAAGAAACAAACAAAAATGGAAGAGCTCAGAAAACTCATGAGCTTAAAGCAGAGCTTTGATAAGCAATAGTATTGCAATCTGTACAGGAAACTAACTTTGTAACTGTTCTATAGCTTATGCAAAAGTCTCAATAAGTTTATCAGATTTTTTATTAGAAAAAGTATGGAAATCTGTACAGGAAATGTCTGTAAACACTAATTTTGCATCTGTTATAGTTAAAGCAGAAGTTTGTAATAAGCATCGAAAACTAACTAATGGATGGATTTAGAGAATTAGATCGGAAAGAGGTCAACTTAGGGGGTAGCAACATAGATCTGCACAAGGGGCAAGTGACGTGTCCATCGTTCACCCAAGTATCAAGGCATCCCCTGTGGAAGACATGGCTGCAGGTGATGAGCTCTCTGACCTCCTCATCTAGCTCCATGGATTCAAGGCAGATTGAGCATCCCTTCACTGATTGACCGCATTTCCGCCGGCGGCAGAGGAGGTAATCGCTGTAGAGGAGTATGGGGACTTTGAGCTTGACGGCGGCGGTGGCAACCTCGATTGGAACGGTGACAAGGGAAGGGCAAGTGCCGTCTAATAGAAGGATGTAACTATTGGGGTTGTAGCTTGAATCGGCATCGTCTTCTTCAGGGGGAGGTTTGCAGAGTCCCAGCCGAGTAACGAAAACAATCACCGTTAATTTGAGATATCTCCATAAGAATGCCAATTTCGGTAATTCAATCACATGGAATAGGAACCCCATCACTCACAAAAAGAGTATAGTTTTTCTTAGTGGAAAAACACAACTGTCATCACTTTCCTAAATATATATAAATAATATGTTCTTCTGTTCCTATTTTATTGCCTTTTTTATATATATATTTATTTTTATTTATTTGTGTATTTTTTTAAAAAAAAAAATCTTAATATGTTTTTATTTAATTCTAAAAAAAATTTAGTACTACTAAATTGCAATGCATATTTTTTTAAATCAAAAAATACATTTATTAACTTAGGAAATTGGATAATCTTTTAAGATAAAAATAAAATTATCCTTAATATATATATCACATCTAAAGTAAACAACTAAATAGGGATTGAGAAAATAATGACTAATACTTTGTCATATCAATAATGTTTTAAAAGAAACATACATACATATATCAATTTTGAAAATAAAAGAAGCAAAAGTTTGCCGCTTCTTAGAATAAAATATAAGTTTGGATAAGAATTAATTTAGTGATTAGGTGTTCAATTAAATTAAAAATGGCTGGTAAAAATATATAATATACATGATTAATTAATATATGATCTAGGTATATTTGTGAAAAGTAAATTTCTCTGATTATTTATATGATGAAAGATTCCAATATTTTTATATAACTAAAATAATTTTTATTCAATTATTATATCAAAGTAAATACAAATCTCGGGACACTTCAACTTCTTTGCATAGAATAAATTAATGAATTCAAATATGGAGATCACCCACCTTAACAAAGGAACACCAACTCATACTTTTTAACATCAATTAATATCTTGAACATGCATTGCACGTACATTTCATATTAATTGGTATATTTAAGTTAAAAAAAAATTAAAATATGTGTATCCTGAGTTGCACGAAATTATAGAGAAAAAAAATAAAAAAAATTGCTTTGAGATGTATT</genome_strand>
        <mrna_strand>CTTGATCCTCATGGATTGTCAA....................................................................ATGCCGAAGATGGATGGTTATGAAGCAACAAAGGCAATTAGAAAATCAGAAATGGGGACAGGAACACACATTCCCATTGTTGCACTAACAGCTCATGCAATGTCATCAGATGAAGCAAAATGCTTACAGGTTGGTATGGATGCTTATTTAACCAAGCCCATAGACAGCAAGTTGATGGTTTCCACCATTCTTTCCTTGACTAAAAGAAAAGCCTAACCATCATACCTCTCTATCAAAAACGGAAGAAACAAACAAAAATGGAAGAGCTCAGAAAACTCATGAGCTTAAAGCAGAGCTTTGATAAGCAATAGTATTGCAATCTGTACAGGAAACTAACTTTGTAACTGTTCTATAGCTTATGCAAAAGTCTCAATAAGTTTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307387" ref_strand="+" ref_description="SGN-E307387 [cLEY-12-K7]">
      <seq>cccattgttgcacctaacagctcatgccaatgtcatcagatgaagcaaaatgcttacaggttggtatggatgccttatttaaccaagccccatagaccagcaagttgatggtttccacccattctttccttgactaaaagaaaagcctaaccatcataccctctctatcaaaaacggaagaaacaaacaaaaatggaagagctcagaaaactcatgagcttaaagccgagctttgataagccatagtattgcaatctgtacaggaaactaactttgtaactgttctatagcttatgcaaaagtctcaataagtttatcagattttttattagaaaaagtatggaaatctgtccaggaaatgtctgtaaaccctaattttgcatctgttatagttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="93736" stop="92746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93436" g_stop="93046" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E307387" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93436" e_stop="93046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTGTTGCA-CTAACAGCTCATG-CAATGTCATCAGATGAAGCAAAATGCTTACAGGTTGGTATGGATG-CTTATTTAACCAAGCCC-ATAGA-CAGCAAGTTGATGGTTTCCA-CCATTCTTTCCTTGACTAAAAGAAAAGCCTAACCATCATA-CCTCTCTATCAAAAACGGAAGAAACAAACAAAAATGGAAGAGCTCAGAAAACTCATGAGCTTAAAGCAGAGCTTTGATAAGCAATAGTATTGCAATCTGTACAGGAAACTAACTTTGTAACTGTTCTATAGCTTATGCAAAAGTCTCAATAAGTTTATCAGATTTTTTATTAGAAAAAGTATGGAAATCTGTACAGGAAATGTCTGTAAACACTAATTTTGCATCTGTTATAGTTAAAG</genome_strand>
        <mrna_strand>CCCATTGTTGCACCTAACAGCTCATGCCAATGTCATCAGATGAAGCAAAATGCTTACAGGTTGGTATGGATGCCTTATTTAACCAAGCCCCATAGACCAGCAAGTTGATGGTTTCCACCCATTCTTTCCTTGACTAAAAGAAAAGCCTAACCATCATACCCTCTCTATCAAAAACGGAAGAAACAAACAAAAATGGAAGAGCTCAGAAAACTCATGAGCTTAAAGCCGAGCTTTGATAAGCCATAGTATTGCAATCTGTACAGGAAACTAACTTTGTAACTGTTCTATAGCTTATGCAAAAGTCTCAATAAGTTTATCAGATTTTTTATTAGAAAAAGTATGGAAATCTGTCCAGGAAATGTCTGTAAACCCTAATTTTGCATCTGTTATAGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739856" ref_strand="+" ref_description="SGN-E739856 [LC19AE12]">
      <seq>gcactgtatagtgtaggtcaattgatgaaagaaattgttgagtttcatagtggtcacatttatttaacctctcaagaaggatggttgctcgctacatccacgaatagccctctcttgatgaatactacaaaaggaccaaagctaatgatggctattgattctgaagaccccgttatacgatctggggctgagtgcttacagaaggattatggaaagaggcttaccccaagtcaagaagtgcacatagagaatgctaaacttgggaatcagctctattatattgactcattttacctgcagttaaagagacttccaatggtaggagttatcatcattccaaggaaatatataatgggaaaggtagatgagagggctatcaagactcttgtaatattgatctcagcatcaatatgcatcctaatcattggatgtgtctgcatcttcgtactaacagatggagtgtcaaaggaaatgaaacttagagcagagctgataagccagttagatgcaagaaggaaagcagaggcatcgagcaattacaaaagccaatttctagcgaacatgagtcatgaattacgaacacctatggctgcagttattggcttgctggacattcttataagtgatggttttcttacaaatgaacagtatgcaactattactcaaattcgtaaatgctcaactgccttgcttcggcttctaaacaacattttggatctcagtaaggtagaatctggaaaactagtgttggaagaaacagaatttgacttggctcgagaacttgaaggacttgttgatatgttctctgtccagtgcattaatcacaatgttgagacagttctagatctctctgatgatatgcccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="97664" stop="95767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97364" g_stop="97047" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97046" i_stop="96956" i_length="91">
            <donor d_prob="0.608" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96955" g_stop="96708" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="566" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96707" i_stop="96570" i_length="138">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96569" g_stop="96410" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="726" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96409" i_stop="96200" i_length="210">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96199" g_stop="96073" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="853" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96072" i_stop="95984" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95983" g_stop="95970" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="867" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E739856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97364" e_stop="97047"/>
          <exon e_start="96955" e_stop="96708"/>
          <exon e_start="96569" e_stop="96410"/>
          <exon e_start="96199" e_stop="96073"/>
          <exon e_start="95983" e_stop="95970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTGTATAGTGTAGGTCAATTGATGAAAGAAATTGTTGAGTTTCATAGTGGTCACATTTATTTAACCTCTCAAGAAGGATGGTTGCTCGCTACATCCACGAATAGCCCTCTCTTGATGAATACTACAAAAGGACCAAAGCTAATGATGGCTATTGATTCTGAAGACCCCGTTATACGATCTGGGGCTGAGTGCTTACAGAAGGATTATGGAAAGAGGCTTACCCCAAGTCAAGAAGTGCACATAGAGAATGCTAAACTTGGGAATCAGCTCTATTATATTGACTCATTTTACCTGCAGTTAAAGAGACTTCCAATGGTAAATTGTTAGCTTAGTACACTTCAGTATCATGATTGGATAAGCTCGTTCTGCTGATTTATCGATGCTTAATGATCTGCAAACTTTGCAGGTAGGAGTTATCATCATTCCAAGGAAATATATAATGGGAAAGGTAGATGAGAGGGCTATCAAGACTCTTGTAATATTGATCTCAGCATCAATATGCATCCTAATCATTGGATGTGTCTGCATCTTCGTACTAACAGATGGAGTGTCAAAGGAAATGAAACTTAGAGCAGAGCTGATAAGCCAGTTAGATGCAAGAAGGAAAGCAGAGGCATCGAGCAATTACAAAAGCCAATTTCTAGCGAACATGAGGTGAATATTCATCACTCCTTTGTTACTTCCGCTCTTCTATTCTACATCTTACCTCTGCGAAAGATTCATTCTCAGTTTAAATTTTTAGTTTCTCATATGTACATTTCTACAGTTACTTCATGCTTTGTTTTTTCACAGTCATGAATTACGAACACCTATGGCTGCAGTTATTGGCTTGCTGGACATTCTTATAAGTGATGGTTTTCTTACAAATGAACAGTATGCAACTATTACTCAAATTCGTAAATGCTCAACTGCCTTGCTTCGGCTTCTAAACAACATTTTGGATCTCAGTAAGGTAAGATGCACACTAACAACTCTTTTGATGATACTTTTCGAAAGAGTTTACTCTTTGATTAACTAAGGTCACCCTACTGTTCCTCGGAGAGATTATAGCATAGATGAAATGGTAATAGACTATTTAGGGTAATGTTGCAGCTAGCTTAAGCTCATTACTCAAAAGAGTGTTTTAATTAGACCTGAGAAAAATCATATATTCATTGGGCAGGTAGAATCTGGAAAACTAGTGTTGGAAGAAACAGAATTTGACTTGGCTCGAGAACTTGAAGGACTTGTTGATATGTTCTCTGTCCAGTGCATTAATCACAATGTTGAGACAGTTCTAGATCTCTCTGGTACATCATTGTTCTCCTTACAAATTGATTTCGAGACTCTTCACATTGTTTTCTGAATGCATATTATTTTCTCATTTTTCTATCTGTAGATGATATGCCAAAA</genome_strand>
        <mrna_strand>GCACTGTATAGTGTAGGTCAATTGATGAAAGAAATTGTTGAGTTTCATAGTGGTCACATTTATTTAACCTCTCAAGAAGGATGGTTGCTCGCTACATCCACGAATAGCCCTCTCTTGATGAATACTACAAAAGGACCAAAGCTAATGATGGCTATTGATTCTGAAGACCCCGTTATACGATCTGGGGCTGAGTGCTTACAGAAGGATTATGGAAAGAGGCTTACCCCAAGTCAAGAAGTGCACATAGAGAATGCTAAACTTGGGAATCAGCTCTATTATATTGACTCATTTTACCTGCAGTTAAAGAGACTTCCAATG...........................................................................................GTAGGAGTTATCATCATTCCAAGGAAATATATAATGGGAAAGGTAGATGAGAGGGCTATCAAGACTCTTGTAATATTGATCTCAGCATCAATATGCATCCTAATCATTGGATGTGTCTGCATCTTCGTACTAACAGATGGAGTGTCAAAGGAAATGAAACTTAGAGCAGAGCTGATAAGCCAGTTAGATGCAAGAAGGAAAGCAGAGGCATCGAGCAATTACAAAAGCCAATTTCTAGCGAACATGAG..........................................................................................................................................TCATGAATTACGAACACCTATGGCTGCAGTTATTGGCTTGCTGGACATTCTTATAAGTGATGGTTTTCTTACAAATGAACAGTATGCAACTATTACTCAAATTCGTAAATGCTCAACTGCCTTGCTTCGGCTTCTAAACAACATTTTGGATCTCAGTAAG..................................................................................................................................................................................................................GTAGAATCTGGAAAACTAGTGTTGGAAGAAACAGAATTTGACTTGGCTCGAGAACTTGAAGGACTTGTTGATATGTTCTCTGTCCAGTGCATTAATCACAATGTTGAGACAGTTCTAGATCTCTCTG.........................................................................................ATGATATGCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698820" ref_strand="+" ref_description="SGN-E698820 [FA07CG08]">
      <seq>taattaggatttacaaagacaaagacctcgctgaactcgaattcactattggtcctataccgacagaagatagtgttggaaaagaggtcattaccaaatcacagcaaatatggccactgataaagtgttctacactgactctaatgggagggactttcttaaaagagttagaaattacagagctgattgggacctccaagttactcaacctgttgctgggaactattatccagtaaatcttggaatgtacataacagataacaaatcagaattgtctgttttggtagatcgtgcaacaggtggagccagcataaaggatggagaaatagaactcatgttgcacaggcgcttgatcaatgatgatggtagaggagtgggtgaagcccttgatgagcctgtctgtgtggggagtacatgtgagggactcacggttcgagggaactactatctgggaattcataaaaacagtgatggttcacgttggcgcagaacaactggccaagaaatttattcacctcttattttagcttttgcacatgagaatcaggaagaatggaaagcttcgcatatgaccaaagccaccatcatgaatcccaattatagtttacctcctaatgttgcactgattactctccaggagttggataacggaggtgtacttatccgtttggctcatctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="112936" stop="110491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112636" g_stop="112590" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112589" i_stop="112510" i_length="80">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112509" g_stop="112390" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="166" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112389" i_stop="111868" i_length="522">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111867" g_stop="111802" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="232" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111801" i_stop="111720" i_length="82">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111719" g_stop="111607" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="345" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111606" i_stop="111507" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111506" g_stop="111422" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="430" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111421" i_stop="111260" i_length="162">
            <donor d_prob="0.728" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111259" g_stop="111149" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="541" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111148" i_stop="111017" i_length="132">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111016" g_stop="110921" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="637" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="110920" i_stop="110835" i_length="86">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="110834" g_stop="110791" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="681" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E698820" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112636" e_stop="112590"/>
          <exon e_start="112509" e_stop="112390"/>
          <exon e_start="111867" e_stop="111802"/>
          <exon e_start="111719" e_stop="111607"/>
          <exon e_start="111506" e_stop="111422"/>
          <exon e_start="111259" e_stop="111149"/>
          <exon e_start="111016" e_stop="110921"/>
          <exon e_start="110834" e_stop="110791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACTGTAAGTCAACTCTGCCGAATGATATTTCACATTGAAGGGTAGTTATGAACTGTATATCTGACATACCTCTTCAATTGAAGATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGAGTAAGCTTAACTTTTCGTTCCTCTTTAAGTACATTTAAGCTGTATAAAACCTAAGGAGACAGTTTCTCATTAATATAGTCTCTTTGTTCTGTGTGCATATATCTTGTCAATATACTCTCTCCCTTTTTAGTTCATGTTTATTGTCTCAACATTTTGACTTTCATTACCTTATACTATGGCAACGTGCTGAGAGCTTTTGTCAATGTCCGTTTAAATTCCTTGAAGTGTTTATCTACAAATTGAAACAAATGTCATTGAGTTGTATCACCATCTATTCAATTTGAACTAGATAATTCTTGATGTTGGCTTACTAGCTGAACATGCTTTTATCTGTCTGCTATATTGGCTCAATGTGCTTGTTAATGGAACAGAAATATTATAAACATCCTTTACATTGGCAATTTATGAACAAGGAAAATAGTCATCAGGATTTCAATGTACTGGGCTTCATATTTTATTCACTTTATCTCAATTTTCTGTTTATTTTTGAGCTAATTTGGGTGATAATTTGTTGCTCATCAGGTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCAGTTACTTTCCCAACAGACTTTCTTGAATTGAAATTGCACTTTTATGATTGAGCTCACGTATTGATACTATGTTTATTCTCAGGTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAGGTTCAAATCTTTGAACTTTTTTCTTTAGTTTGTTTATAAATATATCATGCTTAATATAATTGTTGGACTTCCAAATGTAATGGATTTCAAATTATACCAGGCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACGGTACGTTTGATATGGCATTCCAAAGCAGGCCTAGGCTGCAATAAGATTTCAACCGTAACTTAGCTGCTCATCAAGGAAAATGTACTTCAGAAATACAAAATGTAGCAACCTCTGATTAGTATGCTTCTTTTGAACTTACCTGTTCTCATATCCCTTGGTCAGGTTCGAGGGAACTACTATCTGGGAATTCATAAAAACAGTGATGGTTCACGTTGGCGCAGAACAACTGGCCAAGAAATTTATTCACCTCTTATTTTAGCTTTTGCACATGAGGTAATCTCAACAATCTACATATTATGAAGAGGACCAAATTCGGCAGGCCCTACACACCTTATGATATTCCTTAATTTTAAATGATCAATATTTTTGCTTGATATCGGGAAATTGCACAACTTGATCTTGCAGAATCAGGAAGAATGGAAAGCTTCGCATATGACCAAAGCCACCATCATGAATCCCAATTATAGTTTACCTCCTAATGTTGCACTGATTACTCTCCAGGTTATTATTGTATAGAGCGTGCAGTGATTAAAATGATCCTTATCCTTTGATGAAATAATGAAGTCATTTCTGTTTTTATCTTCCAGGAGTTGGATAACGGAGGTGTACTTATCCGTTTGGCTCATCTATA</genome_strand>
        <mrna_strand>TAATTAGGATTTACAAAGACAAAGACCTCGCTGAACTCGAATTCACT................................................................................ATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACC-AAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCA..................................................................................GTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAG....................................................................................................GCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACG..................................................................................................................................................................GTTCGAGGGAACTACTATCTGGGAATTCATAAAAACAGTGATGGTTCACGTTGGCGCAGAACAACTGGCCAAGAAATTTATTCACCTCTTATTTTAGCTTTTGCACATGAG....................................................................................................................................AATCAGGAAGAATGGAAAGCTTCGCATATGACCAAAGCCACCATCATGAATCCCAATTATAGTTTACCTCCTAATGTTGCACTGATTACTCTCCAG......................................................................................GAGTTGGATAACGGAGGTGTACTTATCCGTTTGGCTCATCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702374" ref_strand="+" ref_description="SGN-E702374 [FA18CB09]">
      <seq>cacccaaacaaactcccaaatattggctcttctttcgagtgtctgtgtcacctcttggctggaatacttattttatttctaaagcttcacagaaggggagctctgcgggctatgtcacaaagatggacattccactgaacgagactgttgaaattggaccagggaacttaaaggcgtccttttcctcaagtactggtcaacttaaacgtctatataattctataacaggagttgatatacctgtacaacaaagctatctttggtatgcctcgagttcgaacttggatcaggattctggtgcctacattttcagacccgatggatcacccccagtcatagttgcgagatcagttccaataaaggtaatgcgtggacccctggtcgatgaaatccaccagcaattcaactcatggatatctcaggtaattaggatttacaaagacaaagaacacgctgaactcgaattcactattggtcctataccgacagaagatagtgttggaaaagaggtcattaccaaaatcacagcaaatatggccactgataaagtgttctacactgactctaatgggagggactttcttaaaagagttagaaattacagagctgattgggacctccaagttactcaacctgttgctgggaactattatccagtaaatcttggaatgtacataacagataacaaatcagaattgtctgttttggtagatcgtgcaacaggtggagccagcataaaggatggagaaatagaactcatgttgcacaggcgcttgatcaatgatgatggtagaggagtgggtgaagcccttgatgagcctgtctgtgtggggagtacatgtgagggactcacggttcgagggaactactatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="114463" stop="110939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114163" g_stop="114068" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114067" i_stop="113919" i_length="149">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113918" g_stop="113785" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="230" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113784" i_stop="113227" i_length="558">
            <donor d_prob="0.447" d_score="1.00"/>
            <acceptor a_prob="0.063" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113226" g_stop="113167" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="290" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113166" i_stop="113070" i_length="97">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113069" g_stop="113010" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="350" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113009" i_stop="112832" i_length="178">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112831" g_stop="112760" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="422" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112759" i_stop="112638" i_length="122">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112637" g_stop="112590" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="470" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112589" i_stop="112510" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112509" g_stop="112390" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="590" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112389" i_stop="111868" i_length="522">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111867" g_stop="111802" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="656" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111801" i_stop="111720" i_length="82">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111719" g_stop="111607" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="769" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="111606" i_stop="111507" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="111506" g_stop="111422" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="854" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="111421" i_stop="111260" i_length="162">
            <donor d_prob="0.728" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="111259" g_stop="111239" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="875" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E702374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114163" e_stop="114068"/>
          <exon e_start="113918" e_stop="113785"/>
          <exon e_start="113226" e_stop="113167"/>
          <exon e_start="113069" e_stop="113010"/>
          <exon e_start="112831" e_stop="112760"/>
          <exon e_start="112637" e_stop="112590"/>
          <exon e_start="112509" e_stop="112390"/>
          <exon e_start="111867" e_stop="111802"/>
          <exon e_start="111719" e_stop="111607"/>
          <exon e_start="111506" e_stop="111422"/>
          <exon e_start="111259" e_stop="111239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGGGTAATACAAAATGTTCTATCTCTCTATGTCTCTTTTTCATCACTAATATGCTCATAGATGACTAAAATATAAGAAGGCATTGCCTGTTTTCAAAAAGTAAAATGATAAATCCATCCTTCATATGTTTCAATGTCTGCTGAAATATACAGGGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGAGTAAGTTCTTAATTATGTCAGTATCTCAACCTGGAAGCATATTGAATGCATCCTTGCCATTTTTTTTCTTGCTGAGTTAAGACTTGTAAAGCATACTAGTTATTTACCTGGACGCGGTCTAACGGTCCTTGTCAACAGGTTATACTCTATTACATGCTATCAAATGCATTATATTCTCTTTTTTCTTCATACAAGTCTCATCTCTCCTCCCCGGTTTATTAGGGTCGGGATGATTACATCTGCTGAAATATATCTAAAACAAAGAGTAGAATGAGAACTTTGATCCAATTGCTTAGGAATGAAGATAAGGGTGGGTTTATAAGTAAAGGCTGTTGTTTTCTTTGATTGTCATCTACTAAATTACATTAAAAAAACTTTTAGTAACAAACAAAAGATCTTCCATTCTATTTCTGTGCATAGCTGTGACAGACATGCTTGATGATGATTATAGTACACAAAATAATTCATATTACCCCGTATTTATCTAGTTGATCTTTGTCTTTCTTTTCTATGTCGAGGGCCGTCTCATCCTTCTAACTAACAAATGACTATTATTAGGTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAGGTACTTGCTGATGTTCTTGTAGGTATAATTAAATGTTGGATGGCATTACTAAAGGAGACATAGTAAGTTAGGATGTTAATTGTATTATCCATTGCAGGATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCAGTGAGTAGTCTTCTCCCTTTTGTTCCTGTTATTTAACAAGTAAAACTGATTACAGCAATTGTGGTCCTACATCTTTTCCGAAATAAATCAATTAGTTATTTCACTGAAGTTTTGATTTGCATCTCTCACACAGTATCTAGTTTTCTTCATAGCAGAATAATTTCCTTTTTGCTAGCAGGTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAGGTGTGGTGCATGATTCCTTGATTAACTCAATTTTAGTCAGCATCATTTTGATCTTTTCCAATTTATTCTGTTATAAACTGTATTGATTGATTCTATTATGTCTTGATATGTCAATGTTTCAGGTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACTGTAAGTCAACTCTGCCGAATGATATTTCACATTGAAGGGTAGTTATGAACTGTATATCTGACATACCTCTTCAATTGAAGATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGAGTAAGCTTAACTTTTCGTTCCTCTTTAAGTACATTTAAGCTGTATAAAACCTAAGGAGACAGTTTCTCATTAATATAGTCTCTTTGTTCTGTGTGCATATATCTTGTCAATATACTCTCTCCCTTTTTAGTTCATGTTTATTGTCTCAACATTTTGACTTTCATTACCTTATACTATGGCAACGTGCTGAGAGCTTTTGTCAATGTCCGTTTAAATTCCTTGAAGTGTTTATCTACAAATTGAAACAAATGTCATTGAGTTGTATCACCATCTATTCAATTTGAACTAGATAATTCTTGATGTTGGCTTACTAGCTGAACATGCTTTTATCTGTCTGCTATATTGGCTCAATGTGCTTGTTAATGGAACAGAAATATTATAAACATCCTTTACATTGGCAATTTATGAACAAGGAAAATAGTCATCAGGATTTCAATGTACTGGGCTTCATATTTTATTCACTTTATCTCAATTTTCTGTTTATTTTTGAGCTAATTTGGGTGATAATTTGTTGCTCATCAGGTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCAGTTACTTTCCCAACAGACTTTCTTGAATTGAAATTGCACTTTTATGATTGAGCTCACGTATTGATACTATGTTTATTCTCAGGTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAGGTTCAAATCTTTGAACTTTTTTCTTTAGTTTGTTTATAAATATATCATGCTTAATATAATTGTTGGACTTCCAAATGTAATGGATTTCAAATTATACCAGGCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACGGTACGTTTGATATGGCATTCCAAAGCAGGCCTAGGCTGCAATAAGATTTCAACCGTAACTTAGCTGCTCATCAAGGAAAATGTACTTCAGAAATACAAAATGTAGCAACCTCTGATTAGTATGCTTCTTTTGAACTTACCTGTTCTCATATCCCTTGGTCAGGTTCGAGGGAACTACTATCTG</genome_strand>
        <mrna_strand>CACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGG.....................................................................................................................................................GGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAG.................................................................................................GATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCA..................................................................................................................................................................................GTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAG..........................................................................................................................GTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACT................................................................................ATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCA..................................................................................GTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAG....................................................................................................GCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACG..................................................................................................................................................................GTTCGAGGGAACTACTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705397" ref_strand="+" ref_description="SGN-E705397 [FA27AB06]">
      <seq>cttggatggaatcgaactgatatcatcaagatcccggtcaacgatgctgatcttattgtaaaagattccatgggaaatctaattgaggcacaatttatagagttggataatattaccagcaacttacgaaagttgtatgttaaggcatatcttggaatatcacccaaacaaactcccaaatattggctcttctttcgagtgtctgtgtcacctcttggctggaatacttattttatttctaaagcttcacagaaggggagctctgcgggctatgtcacaaagatggacattccactgaacgagactgttgaaattggaccagggaacttaaaggcgtccttttcctcaagtactggtcaacttaaacgtctatataattctataacaggagttgatatacctgtacaacaaagctatctttggtatgcctcgagttcgaacttggatcaggattctggtgcctacattttcagacccgatggatcacccccagtcatagttgcgagatcagttccaataaaggtaatgcgtggacccctggtcgatgaaatccaccagcaattcaactcatggatatctcaggtaattaggatttacaaagacaaagaacacgctgaactcgaattcactattggtcctataccgacagaagatagtgttggaaaagaggtcattaccaaaatcacagcaaatatggccactgataaagtgttctacactgactctaatgggagggactttcttaaaagagttagaaattacagagctgattgggacctccaagttactcaacctgttgctgggaactattatccagtaaatcttggaatgtacataacagataacaaatcagaattgtctgttttggtagatcgtgcaacaggtggagccagcataaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="114832" stop="111332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114532" g_stop="114497" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114496" i_stop="114288" i_length="209">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114287" g_stop="114068" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="256" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114067" i_stop="113919" i_length="149">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113918" g_stop="113785" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="390" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113784" i_stop="113227" i_length="558">
            <donor d_prob="0.447" d_score="1.00"/>
            <acceptor a_prob="0.063" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113226" g_stop="113167" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="450" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113166" i_stop="113070" i_length="97">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113069" g_stop="113010" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="510" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113009" i_stop="112832" i_length="178">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112831" g_stop="112760" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="582" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112759" i_stop="112638" i_length="122">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112637" g_stop="112590" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="630" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112589" i_stop="112510" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="112509" g_stop="112390" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="750" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="112389" i_stop="111868" i_length="522">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111867" g_stop="111802" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="816" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="111801" i_stop="111720" i_length="82">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="111719" g_stop="111632" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="904" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E705397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114532" e_stop="114497"/>
          <exon e_start="114287" e_stop="114068"/>
          <exon e_start="113918" e_stop="113785"/>
          <exon e_start="113226" e_stop="113167"/>
          <exon e_start="113069" e_stop="113010"/>
          <exon e_start="112831" e_stop="112760"/>
          <exon e_start="112637" e_stop="112590"/>
          <exon e_start="112509" e_stop="112390"/>
          <exon e_start="111867" e_stop="111802"/>
          <exon e_start="111719" e_stop="111632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATGGAATCGAACTGATATCATCAAGATCCCGGTGAATGAATAATCTTTTCTGTTTTTTCTTTCTGTTGCTCATTTTATCATTAGACCAGTCGCCAGCTGATTTTATTTAATATGTCAGTCCCATATAATTCAGACAATTATATAACTGATCTATTTTCCTAATTCTCTTTCTTTCTCTTATGCTTTTTTGGAATGGCTTATTCACTGTTGATGGTTATCTAATTGTATTTGCTTTAACAGGTCAACGATGCTGATCTTATTGTAAAAGATTCCATGGGAAATCTAATTGAGGCACAATTTATAGAGTTGGATAATATTACCAGCAACTTACGAAAGTTGTATGTTAAGGCATATCTTGGAATATCACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGGGTAATACAAAATGTTCTATCTCTCTATGTCTCTTTTTCATCACTAATATGCTCATAGATGACTAAAATATAAGAAGGCATTGCCTGTTTTCAAAAAGTAAAATGATAAATCCATCCTTCATATGTTTCAATGTCTGCTGAAATATACAGGGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGAGTAAGTTCTTAATTATGTCAGTATCTCAACCTGGAAGCATATTGAATGCATCCTTGCCATTTTTTTTCTTGCTGAGTTAAGACTTGTAAAGCATACTAGTTATTTACCTGGACGCGGTCTAACGGTCCTTGTCAACAGGTTATACTCTATTACATGCTATCAAATGCATTATATTCTCTTTTTTCTTCATACAAGTCTCATCTCTCCTCCCCGGTTTATTAGGGTCGGGATGATTACATCTGCTGAAATATATCTAAAACAAAGAGTAGAATGAGAACTTTGATCCAATTGCTTAGGAATGAAGATAAGGGTGGGTTTATAAGTAAAGGCTGTTGTTTTCTTTGATTGTCATCTACTAAATTACATTAAAAAAACTTTTAGTAACAAACAAAAGATCTTCCATTCTATTTCTGTGCATAGCTGTGACAGACATGCTTGATGATGATTATAGTACACAAAATAATTCATATTACCCCGTATTTATCTAGTTGATCTTTGTCTTTCTTTTCTATGTCGAGGGCCGTCTCATCCTTCTAACTAACAAATGACTATTATTAGGTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAGGTACTTGCTGATGTTCTTGTAGGTATAATTAAATGTTGGATGGCATTACTAAAGGAGACATAGTAAGTTAGGATGTTAATTGTATTATCCATTGCAGGATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCAGTGAGTAGTCTTCTCCCTTTTGTTCCTGTTATTTAACAAGTAAAACTGATTACAGCAATTGTGGTCCTACATCTTTTCCGAAATAAATCAATTAGTTATTTCACTGAAGTTTTGATTTGCATCTCTCACACAGTATCTAGTTTTCTTCATAGCAGAATAATTTCCTTTTTGCTAGCAGGTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAGGTGTGGTGCATGATTCCTTGATTAACTCAATTTTAGTCAGCATCATTTTGATCTTTTCCAATTTATTCTGTTATAAACTGTATTGATTGATTCTATTATGTCTTGATATGTCAATGTTTCAGGTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACTGTAAGTCAACTCTGCCGAATGATATTTCACATTGAAGGGTAGTTATGAACTGTATATCTGACATACCTCTTCAATTGAAGATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGAGTAAGCTTAACTTTTCGTTCCTCTTTAAGTACATTTAAGCTGTATAAAACCTAAGGAGACAGTTTCTCATTAATATAGTCTCTTTGTTCTGTGTGCATATATCTTGTCAATATACTCTCTCCCTTTTTAGTTCATGTTTATTGTCTCAACATTTTGACTTTCATTACCTTATACTATGGCAACGTGCTGAGAGCTTTTGTCAATGTCCGTTTAAATTCCTTGAAGTGTTTATCTACAAATTGAAACAAATGTCATTGAGTTGTATCACCATCTATTCAATTTGAACTAGATAATTCTTGATGTTGGCTTACTAGCTGAACATGCTTTTATCTGTCTGCTATATTGGCTCAATGTGCTTGTTAATGGAACAGAAATATTATAAACATCCTTTACATTGGCAATTTATGAACAAGGAAAATAGTCATCAGGATTTCAATGTACTGGGCTTCATATTTTATTCACTTTATCTCAATTTTCTGTTTATTTTTGAGCTAATTTGGGTGATAATTTGTTGCTCATCAGGTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCAGTTACTTTCCCAACAGACTTTCTTGAATTGAAATTGCACTTTTATGATTGAGCTCACGTATTGATACTATGTTTATTCTCAGGTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATG</genome_strand>
        <mrna_strand>CTTGGATGGAATCGAACTGATATCATCAAGATCCCG.................................................................................................................................................................................................................GTCAACGATGCTGATCTTATTGTAAAAGATTCCATGGGAAATCTAATTGAGGCACAATTTATAGAGTTGGATAATATTACCAGCAACTTACGAAAGTTGTATGTTAAGGCATATCTTGGAATATCACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGG.....................................................................................................................................................GGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAG.................................................................................................GATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCA..................................................................................................................................................................................GTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAG..........................................................................................................................GTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACT................................................................................ATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCA..................................................................................GTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319529" ref_strand="+" ref_description="SGN-E319529 [cTOB-15-E16]">
      <seq>agaaggggagctctgcgggctatgtcacaaagatggacattccactgaacgagactgttgaaattggaccagggaacttaaaggcgtccttttcctcaagtactggtcaacttaaacgtctatataattctataacaggagttgatatacctgtacaacaaagctatctttggtatgcctcgagttcgaacttggatcaggattctggtgcctacattttcagacccgatggatcacccccagtcatagttgcgagatcagttccaataaatgtaatgcgtggacccctggtcgatgaaatccaccagcaattcaactcatggatatctcacgtgattaggatttacaaagacaaagaacacgctgaactcgaattcactattggtcctataccgacagaagatagtgttggaaaagaggtcattaccaaaatcacagcgaatatggccactgataaagtgttctacactgactctaatgggagggactttcttaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="114224" stop="112091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114073" g_stop="114068" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114067" i_stop="113919" i_length="149">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113918" g_stop="113785" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="140" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113784" i_stop="113227" i_length="558">
            <donor d_prob="0.447" d_score="1.00"/>
            <acceptor a_prob="0.063" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113226" g_stop="113167" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="200" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113166" i_stop="113070" i_length="97">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113069" g_stop="113010" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="260" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113009" i_stop="112832" i_length="178">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112831" g_stop="112760" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="332" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112759" i_stop="112638" i_length="122">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112637" g_stop="112590" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="380" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112589" i_stop="112510" i_length="80">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112509" g_stop="112391" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="499" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E319529" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114073" e_stop="114068"/>
          <exon e_start="113918" e_stop="113785"/>
          <exon e_start="113226" e_stop="113167"/>
          <exon e_start="113069" e_stop="113010"/>
          <exon e_start="112831" e_stop="112760"/>
          <exon e_start="112637" e_stop="112590"/>
          <exon e_start="112509" e_stop="112391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGTAATACAAAATGTTCTATCTCTCTATGTCTCTTTTTCATCACTAATATGCTCATAGATGACTAAAATATAAGAAGGCATTGCCTGTTTTCAAAAAGTAAAATGATAAATCCATCCTTCATATGTTTCAATGTCTGCTGAAATATACAGGGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGAGTAAGTTCTTAATTATGTCAGTATCTCAACCTGGAAGCATATTGAATGCATCCTTGCCATTTTTTTTCTTGCTGAGTTAAGACTTGTAAAGCATACTAGTTATTTACCTGGACGCGGTCTAACGGTCCTTGTCAACAGGTTATACTCTATTACATGCTATCAAATGCATTATATTCTCTTTTTTCTTCATACAAGTCTCATCTCTCCTCCCCGGTTTATTAGGGTCGGGATGATTACATCTGCTGAAATATATCTAAAACAAAGAGTAGAATGAGAACTTTGATCCAATTGCTTAGGAATGAAGATAAGGGTGGGTTTATAAGTAAAGGCTGTTGTTTTCTTTGATTGTCATCTACTAAATTACATTAAAAAAACTTTTAGTAACAAACAAAAGATCTTCCATTCTATTTCTGTGCATAGCTGTGACAGACATGCTTGATGATGATTATAGTACACAAAATAATTCATATTACCCCGTATTTATCTAGTTGATCTTTGTCTTTCTTTTCTATGTCGAGGGCCGTCTCATCCTTCTAACTAACAAATGACTATTATTAGGTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAGGTACTTGCTGATGTTCTTGTAGGTATAATTAAATGTTGGATGGCATTACTAAAGGAGACATAGTAAGTTAGGATGTTAATTGTATTATCCATTGCAGGATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCAGTGAGTAGTCTTCTCCCTTTTGTTCCTGTTATTTAACAAGTAAAACTGATTACAGCAATTGTGGTCCTACATCTTTTCCGAAATAAATCAATTAGTTATTTCACTGAAGTTTTGATTTGCATCTCTCACACAGTATCTAGTTTTCTTCATAGCAGAATAATTTCCTTTTTGCTAGCAGGTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAGGTGTGGTGCATGATTCCTTGATTAACTCAATTTTAGTCAGCATCATTTTGATCTTTTCCAATTTATTCTGTTATAAACTGTATTGATTGATTCTATTATGTCTTGATATGTCAATGTTTCAGGTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACTGTAAGTCAACTCTGCCGAATGATATTTCACATTGAAGGGTAGTTATGAACTGTATATCTGACATACCTCTTCAATTGAAGATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAG</genome_strand>
        <mrna_strand>AGAAGG.....................................................................................................................................................GGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAG.................................................................................................GATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCA..................................................................................................................................................................................GTTCCAATAAATGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAC..........................................................................................................................GTGATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACT................................................................................ATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCGAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318357" ref_strand="+" ref_description="SGN-E318357 [cTOA-29-O18]">
      <seq>gatcagacaacactaggccatcaactgataaagaatgaattcaatatcactcctcgtgcaggatggcagatcgatccatttgggcactctgccgtgcaagcttatcttcttggcgcagaggtaggatttgattctgttcactttgcgcgcattgattatcaagacagagcaaaacgtaaggaggataaagctcttgaggttatatggcgtggttcgagaacatttggttcttcctcccagatatttaccaacgcatttcctgtacattatagtccaccacatggttttcatttcgaagtggatgatgctgatgattttgttccagtccaggatgatcctcttatctttgacataaatgtcgatatacgggttaatgacttcatcaatgctgcaattacacaagcaaacgtgacacgtacgaatcacgtcatgtggaccatgggagatgacttccaataccaatatgctgaatcttggttcaaggaaatggataaattaattcactatgtcaacaaggacggtcgagtgaatgcattgtactctactccatcaatttatgtagatacaaaacatgcaaccaatgaatcttggcctctaaaaactgatgattactttccatatgcagatggtgaaaattcttattggactggtttctttaccagtcgaccagctttaaagcgatatattcgtatgctaagtggatattatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="117847" stop="115715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117547" g_stop="117428" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117427" i_stop="117278" i_length="150">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117277" g_stop="117158" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="240" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117157" i_stop="117074" i_length="84">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117073" g_stop="116984" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="330" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116983" i_stop="116890" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116889" g_stop="116818" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="402" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116817" i_stop="116700" i_length="118">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116699" g_stop="116586" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="516" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116585" i_stop="116294" i_length="292">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116293" g_stop="116193" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="617" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116192" i_stop="116109" i_length="84">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116108" g_stop="116015" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="711" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E318357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117547" e_stop="117428"/>
          <exon e_start="117277" e_stop="117158"/>
          <exon e_start="117073" e_stop="116984"/>
          <exon e_start="116889" e_stop="116818"/>
          <exon e_start="116699" e_stop="116586"/>
          <exon e_start="116293" e_stop="116193"/>
          <exon e_start="116108" e_stop="116015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCAGAGGTATGTAAGCTGAGCGTTCATAAGATGTGGTTTAGAGTGTATTATATATAACTTAAATTTTTATTAGACGTAAATTATTTTGAAGTTTATAATCCTGATCTGACTCGAAATATTGATACTTCTTTCACTTCTCCCGGATAACTTTCACAGGTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGGTTATATGGCGTGGTTCGAGAACATTTGGTTCTTCCTCCCAGGTTGATGAAGCATTCTTAAGCTTTGTGCATTTATTTTATATCATTGCTCACTTGTGGTTAACACTGTTTGTGGTTCCTTTGCAGATATTTACCAACGCATTTCCTGTACATTATAGTCCACCACATGGTTTTCATTTCGAAGTGGATGATGCTGATGATTTTGTTCCAGTCCAGGTACTGGCAGAAATAAAAGATTAGTCTCTCTATGGTTTGTTTTAGTATATCAAAGGAGAACAAATTTCTGATATATTTGGTATATGAATTGCAGGATGATCCTCTTATCTTTGACATAAATGTCGATATACGGGTTAATGACTTCATCAATGCTGCAATTACACAAGTACCCTGATTACAATTCTTTTCAGTTATTCATAATCATCAATTTTCGTAGAACTGTAGCTAGAAATAGATCTACATGTAAATGCAATGAATGAAAAGCTGAATATTGTGATGTGTAGGCAAACGTGACACGTACGAATCACGTCATGTGGACCATGGGAGATGACTTCCAATACCAATATGCTGAATCTTGGTTCAAGGAAATGGATAAATTAATTCACTATGTCAACAAGGTAAATACTTCAGGCTCTGCAGAAATTTAGTTAAATCCTCGATAAAAATCTTGAACACGTTTCTTCAACTGTCTGAGTGATTGCTTCAATATGTCTTCTCGTAAGTTCTATTTCAAGAAAATGTAATAACAAGACTCTTAGCCTGTTTTGGTGTTGTCCAGTACATTTATCAGCTAGCTCAAAAACTTCATGAGCGAATCCTAATGGAGAACCAATAGCTCTATTTGTTCCAGTCCAGTTTAAACATTTGCAAAATCATAGAGACTAACTTGCTCTCATTTTCTTTTGACAGGACGGTCGAGTGAATGCATTGTACTCTACTCCATCAATTTATGTAGATACAAAACATGCAACCAATGAATCTTGGCCTCTAAAAACTGATGATTACTTTCCGTGAGCACTTGCTTGATATTCTATACCTCCTGGTTTATCTTGAATATTTTATGGAGTTTATCTAACATCCCTAACTAATTTCAGATATGCAGATGGTGAAAATTCTTATTGGACTGGTTTCTTTACCAGTCGACCAGCTTTAAAGCGATATATTCGTATGCTAAGTGGATATTATCTG</genome_strand>
        <mrna_strand>GATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCAGAG......................................................................................................................................................GTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGGTTATATGGCGTGGTTCGAGAACATTTGGTTCTTCCTCCCAG....................................................................................ATATTTACCAACGCATTTCCTGTACATTATAGTCCACCACATGGTTTTCATTTCGAAGTGGATGATGCTGATGATTTTGTTCCAGTCCAG..............................................................................................GATGATCCTCTTATCTTTGACATAAATGTCGATATACGGGTTAATGACTTCATCAATGCTGCAATTACACAA......................................................................................................................GCAAACGTGACACGTACGAATCACGTCATGTGGACCATGGGAGATGACTTCCAATACCAATATGCTGAATCTTGGTTCAAGGAAATGGATAAATTAATTCACTATGTCAACAAG....................................................................................................................................................................................................................................................................................................GACGGTCGAGTGAATGCATTGTACTCTACTCCATCAATTTATGTAGATACAAAACATGCAACCAATGAATCTTGGCCTCTAAAAACTGATGATTACTTTCC....................................................................................ATATGCAGATGGTGAAAATTCTTATTGGACTGGTTTCTTTACCAGTCGACCAGCTTTAAAGCGATATATTCGTATGCTAAGTGGATATTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368734" ref_strand="-" ref_description="SGN-E368734 [TUS-22-J4]">
      <seq>gtgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtggtggcttccagatgatttgtatttctctctcaaaaaatcacgttaaggacagatcctagcaagaaacaagatggtgtttaccttcagctacccagcgttttcttttgtgaaaaattatgcgtccccaaaaaaatctatgaagtgacaattaatgtttcagtgtcaaaaacatttaattttagcctcttattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="123323" stop="119784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123023" g_stop="122934" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122816" g_stop="122748" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="159" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121879" g_stop="121805" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="234" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121703" g_stop="121339" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="600" r_length="366" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121338" i_stop="120103" i_length="1236">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120102" g_stop="120081" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="622" r_length="22" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E368734" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368734" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="123023" e_stop="122934"/>
          <exon e_start="122816" e_stop="122748"/>
          <exon e_start="121879" e_stop="121805"/>
          <exon e_start="121703" e_stop="121339"/>
          <exon e_start="120102" e_stop="120081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCC-AAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTGAAAATGCAGATTCGGATTACTTCTGATTGCCTTTGTTTATTGATATACTCGTGATCTTTTATACCAAGAGTTCTTCTCTTTTTAAGGGATTAAGAATAGTGTTGGAGAGGTCCAATTAAATTTGATGTCCTAGCATTTCAGACGTCATTGTGTATTAAAAGGCATTCATTGTAGAACAACTACCAAATGACAACCAAGGAATTAGGTTTGTCCTTAAAAGACTTCAGAAATGTTAATATCAATGGGATGACAACCAAGAAATTAGGTTTGTCCTTAAAAGACTTCAGAAATGTTAATATCAATGGGCATTGAATATTTCCAATTACTAACTAACATCAAAAGAGAATGATGCATATTGCCTTGCTCAAAATAACGAATGATGGGACAAGTTCTTCGCTTGTAGATCGACTTTATTCATGGATAGAAGGATAAAGAACTTATATCAAATTTGGACGTGTCTGTGTCACGTCTTTATCTTGTCATCAATAATTGCAGTACAATGATTGGAACCATTAAAACTAAATCATGTGCTTAATAATATATAGTATTGATGTTGAAACTTTTGGTGTTATGTTAGCGGACTAGTCGATTAGGACTATATTTAACTCAATTCACAAGGTAATGGACGAAATAATCCAATCTTTTAAAAGACTTTTGAATACCTTTGTATGTATATACGATATACAATATGCTCAATTTCAACTTTAGAGGTCTGTGTCATTATGATTTGTCATACTAAAGCGCCATATTGCCTCTTCATTCATTGTGCATGTTGAATTGTTGGTGAATGGGTTCTTCGCTAGTAAGAAAATTAATGTTGTTTACTCTTTTTGTTGGTTATGAAATAGCAAGTGTATTATTTATTACGGACTGTAGTTATAACTCAAATTGAATATGTAGACAAGAAAATCGAAAAATAACAACTATTGTACCACACCAAATTAAGTCTCTTTACTGTTAGATAGAGATAATCTAAATATATGTTAGTACTTAAATTGTCAATACAATATATTATGAAGAAGGCTAACAAAGGGTACTATACCATTTTATGTTTAAAAAAAGATTCTTGTTTGACAAATTGCTTTTTACTTAATTTACTTTTCGTGTTGTTGTCCCCTAGTGATTCACTTCTTTCGTACCTATTTATTTACGCCAACAATAACCAATTAGACCCTACAACAATTTCCTCTTTTTATTTTTATTTTTTTGGGAATTAGACCAAAAAAAAAAAAAAACAGG</genome_strand>
        <mrna_strand>GTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237618" ref_strand="-" ref_description="SGN-E237618 [cLED-19-G7]">
      <seq>gaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtggtggcttccagatgatttgtatttctctctcaaaaaatcacgttaaggacagatcctagcaagaaacaagatggtgtttaccttcagctacccagcgttttcttttgtgaaaaattatgcgtccccaaaaaaatctatgaagtgacaattaatgtttcagtgtcaaaaacatttaattttagcctctaattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="122150" stop="119784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121850" g_stop="121805" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121703" g_stop="121339" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="412" r_length="366" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121338" i_stop="120103" i_length="1236">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120102" g_stop="120081" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="434" r_length="22" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E237618" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237618" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121850" e_stop="121805"/>
          <exon e_start="121703" e_stop="121339"/>
          <exon e_start="120102" e_stop="120081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCC-AAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTGAAAATGCAGATTCGGATTACTTCTGATTGCCTTTGTTTATTGATATACTCGTGATCTTTTATACCAAGAGTTCTTCTCTTTTTAAGGGATTAAGAATAGTGTTGGAGAGGTCCAATTAAATTTGATGTCCTAGCATTTCAGACGTCATTGTGTATTAAAAGGCATTCATTGTAGAACAACTACCAAATGACAACCAAGGAATTAGGTTTGTCCTTAAAAGACTTCAGAAATGTTAATATCAATGGGATGACAACCAAGAAATTAGGTTTGTCCTTAAAAGACTTCAGAAATGTTAATATCAATGGGCATTGAATATTTCCAATTACTAACTAACATCAAAAGAGAATGATGCATATTGCCTTGCTCAAAATAACGAATGATGGGACAAGTTCTTCGCTTGTAGATCGACTTTATTCATGGATAGAAGGATAAAGAACTTATATCAAATTTGGACGTGTCTGTGTCACGTCTTTATCTTGTCATCAATAATTGCAGTACAATGATTGGAACCATTAAAACTAAATCATGTGCTTAATAATATATAGTATTGATGTTGAAACTTTTGGTGTTATGTTAGCGGACTAGTCGATTAGGACTATATTTAACTCAATTCACAAGGTAATGGACGAAATAATCCAATCTTTTAAAAGACTTTTGAATACCTTTGTATGTATATACGATATACAATATGCTCAATTTCAACTTTAGAGGTCTGTGTCATTATGATTTGTCATACTAAAGCGCCATATTGCCTCTTCATTCATTGTGCATGTTGAATTGTTGGTGAATGGGTTCTTCGCTAGTAAGAAAATTAATGTTGTTTACTCTTTTTGTTGGTTATGAAATAGCAAGTGTATTATTTATTACGGACTGTAGTTATAACTCAAATTGAATATGTAGACAAGAAAATCGAAAAATAACAACTATTGTACCACACCAAATTAAGTCTCTTTACTGTTAGATAGAGATAATCTAAATATATGTTAGTACTTAAATTGTCAATACAATATATTATGAAGAAGGCTAACAAAGGGTACTATACCATTTTATGTTTAAAAAAAGATTCTTGTTTGACAAATTGCTTTTTACTTAATTTACTTTTCGTGTTGTTGTCCCCTAGTGATTCACTTCTTTCGTACCTATTTATTTACGCCAACAATAACCAATTAGACCCTACAACAATTTCCTCTTTTTATTTTTATTTTTTTGGGAATTAGACCAAAAAAAAAAAAAAACAGG</genome_strand>
        <mrna_strand>GAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTAATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270966" ref_strand="-" ref_description="SGN-E270966 [cLEM-22-E7]">
      <seq>tgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtggtggcttccagatgatttgtatttctctctcaaaaaatcacgttaaggacagatcctagcaagaaacaagatggtgtttaccttcagctacccagcgttttcttttgtgaaaaattatgcgtccccaaaaaatctatgaagtgacaattaatgtttcagtgtcaaaaacatttaattttagcctcttattaacatcctttgtgatcactgaaaaaaaaaaaaaaaaaactcgagcctagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="123322" stop="119784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123022" g_stop="122934" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122816" g_stop="122748" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="158" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121879" g_stop="121805" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="233" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121703" g_stop="121317" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="620" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="636"/>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E270966" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270966" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="123022" e_stop="122934"/>
          <exon e_start="122816" e_stop="122748"/>
          <exon e_start="121879" e_stop="121805"/>
          <exon e_start="121703" e_stop="121317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTGAAA</genome_strand>
        <mrna_strand>TGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350307" ref_strand="+" ref_description="SGN-E350307 [cTOS-5-C11]">
      <seq>tcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtggtggcttccagatgatttgtatttctctctcaaaaaatcacgttaaggacagatcctagcaagaaacaagatggtgtttaccttcagctacccagcgttttcttttgtgaaaattatgcgtccccaaaaaatctatgaagtgancattaatgtttcagtgtcaaaaacatttattttagcctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="124232" stop="121041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123932" g_stop="123896" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123037" g_stop="122934" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="141" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122816" g_stop="122748" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="210" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121879" g_stop="121805" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="285" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121703" g_stop="121341" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="646" r_length="361" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E350307" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123932" e_stop="123896"/>
          <exon e_start="123037" e_stop="122934"/>
          <exon e_start="122816" e_stop="122748"/>
          <exon e_start="121879" e_stop="121805"/>
          <exon e_start="121703" e_stop="121341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTAT</genome_strand>
        <mrna_strand>TCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTG-AAAATTATGCGTCCCCAAAAAATCTATGAAGTGANCATTAATGTTTCAGTGTCAAAAACATTT-ATTTTAGCCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255610" ref_strand="-" ref_description="SGN-E255610 [cLEG-36-M22]">
      <seq>tgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagaaaagttcagatggtaatcaagtatggtgatgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggatgtatctcattactcttgagggaataattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtggtggcttccagatgatttgtatttctctctcagaaaatcacgttaaggacagatcctagcaagaaaaaagagggtgtttaccttcagctacccagcgtttttttttgtgaaaaattatgggtccccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="123076" stop="121099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122776" g_stop="122748" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121879" g_stop="121805" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="104" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121703" g_stop="121399" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="409" r_length="305" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E255610" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255610" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122776" e_stop="122748"/>
          <exon e_start="121879" e_stop="121805"/>
          <exon e_start="121703" e_stop="121399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAA</genome_strand>
        <mrna_strand>TGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAAAAGTTCAGATGGTAATCAAGTATGGTGATGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGATGTATCTCATTACTCTTGAGGGAATAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAGAAAATCACGTTAAGGACAGATCCTAGCAAGAAAAAAGAGGGTGTTTACCTTCAGCTACCCAGCGTTTTTTTTTGTGAAAAATTATGGGTCCCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260710" ref_strand="+" ref_description="SGN-E260710 [cLEG-54-P11]">
      <seq>ctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctccaatgttgctacacgagacactgacatgtcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtactattataagattatggaactttcagttagattcatttgtgggggcttccagatgatttgtatttctctctcaaaaatcacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="124954" stop="121186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124654" g_stop="124472" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124019" g_stop="123896" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="307" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123037" g_stop="122934" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="411" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122816" g_stop="122748" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="480" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121879" g_stop="121805" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="555" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121703" g_stop="121486" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="772" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E260710" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124654" e_stop="124472"/>
          <exon e_start="124019" e_stop="123896"/>
          <exon e_start="123037" e_stop="122934"/>
          <exon e_start="122816" e_stop="122748"/>
          <exon e_start="121879" e_stop="121805"/>
          <exon e_start="121703" e_stop="121486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTT</genome_strand>
        <mrna_strand>CTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGGGGCTTCCAGATGATTTGTATTTCTCTCTC-AAAAATCACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693617" ref_strand="+" ref_description="SGN-E693617 [LH_Ea01M15](-)">
      <seq>tccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctccttctcaggatgttgctatggctgaaaatgtcaatgcaggaccttctgagcctgaaagcaaagcaaccgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggacgactcgtcttccaacgttgctactcgagaccctgacatgtcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtccaaatgatcagtcaaatccgcacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtctgagaagaaggatgaggacaatgataaggaacagaaagaggacacgaagtgaagatgcgtacaactatttgcagctcaggtaaagaagttcagatagtaatcaagtatgctgctgctgctgaaattgctcattggaatgggtcttattatgtctgtggggtagggctgtatctcattactcttgagggactaattgaatcgtctttaaagtatactgttataagattatggaactttcagttagattcatttgtggcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="124947" stop="121229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124647" g_stop="124472" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124019" g_stop="123896" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="300" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.863" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123037" g_stop="122934" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="405" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122816" g_stop="122748" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="474" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.498" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121879" g_stop="121805" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="549" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121703" g_stop="121520" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="732" r_length="183" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E693617" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124647" e_stop="124472"/>
          <exon e_start="124019" e_stop="123896"/>
          <exon e_start="123037" e_stop="122934"/>
          <exon e_start="122816" e_stop="122748"/>
          <exon e_start="121879" e_stop="121805"/>
          <exon e_start="121703" e_stop="121520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCG-ACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAG--TACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCA</genome_strand>
        <mrna_strand>TCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTCCTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGACCTTCTGAGCCTGAAAGCAAAGCAACCGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGACGACTCGTCTTCCAACGTTGCTACTCGAGACCCTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTCCAAATGATCAGTCAAATCCGCACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACACGAAGTGAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAAAGAAGTTCAGATAGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTATACTGTTATAAGATTATGGAACTTTCAGTTAGATTCA-TT-T-GTGGCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705973" ref_strand="+" ref_description="SGN-E705973 [FA28CF03]">
      <seq>cttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctccaatgttgctacacgagacactgacatgtcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcacttccaggtgttgatccaaacgatccttctgtcaaagatttgcttgcttccatgcaagggcagtccgagaagaaggatgaggacaatgataaggaacagaaagaggacaagaagtaaagatgcgtacaactatttgcagctcaggtagagaagttcagatggtaatcaagtatgctgctgctgctgaaattgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="125350" stop="121352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125050" g_stop="124908" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124781" g_stop="124472" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="453" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124019" g_stop="123896" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="577" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123037" g_stop="122934" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="681" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122816" g_stop="122748" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="750" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121879" g_stop="121805" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="825" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121703" g_stop="121652" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="877" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E705973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125050" e_stop="124908"/>
          <exon e_start="124781" e_stop="124472"/>
          <exon e_start="124019" e_stop="123896"/>
          <exon e_start="123037" e_stop="122934"/>
          <exon e_start="122816" e_stop="122748"/>
          <exon e_start="121879" e_stop="121805"/>
          <exon e_start="121703" e_stop="121652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCAGTAAGTCTCCTGTACACAAAACTCTGTTATTTCACCAGAGAAAGTATGTGTTTTTCCTTAAGGATTGCAGTGTATATCTTTTGCCACTTTTGACTTAACTTTGCATTTGATTGACAGCTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAGGTGAGTTAATTAGCTTATTAATTATAATTAGTTTATTAATTATTAATCAAAGAGCGTATTCGGGTTTAGTTTCCTGTTTAATTGTTGTTTCTGGTTTATGTGCCTGTATTTGTACTTTGAGCTCATATGGTGTTAGACTGTTAGTAATGCTGATATGAATGATGTTGGTATGCTGAGATTATTCCTTATGAAGTGTTTCGTTCGGTGTGAAATATAACATGCATGACATATTTTCCAAAAAAAAAAATTGTTTACAAAAATACCCTCGACAAAAATGGTGGAAAGGATGTGGAGAAAGTGTCTTTAACCATACTAATGCATTCATCAAAACTACTTGCATTGCTAATGCCAGGGTTTCCCCTGGATTAGTTATACACATCATAATACCAGATAGAGATAGGTTGAGAAAGTGTAGCAAATAAAGCATTAGGAGTACACAAAGCTAACATAGCTAACATGCATTATTTTTTCTAATGCATCCTCTTCCCAAACGACCCCTTAAGAATTGGTGCTCTTCAGACAAGAGATGCAAAGCTGACCATGCCTATTAAAATAGCCTTTTTGCATTCTAGAAGACCTCCGTCTTAACAGATCCTAGGGTATTATTTAATATTTCCAAGTAAACGAAAAAACAGTATGGGTGACAAATATATCAAAAAGACGAGTAGGTGCAATTATGTTACTCTTGATGCTTCAGCTTTCTTTCCTTACCATTAGTTTCCAGTTGTGTTTTCATTAAGGTTATATTATCTTTCATTGTGGAAGGAGGAAAGCCAGGGATTTCTAGGGGTCATCTTTTTACCAAAGTAGCATGTTTGCTGTTGTTTTTCCAAATAGAATTGAAAAATGAACTAACTTGTCCTAGCAGAAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAGGTATATAACTTCTTAATGCTTTGTTTTTGAAGAAAACTGCATCTTGTTATGTATACTCCTACCTTGCTCCGGTAGTATGAACATTACTGTTAATCTTGTAGGTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCA</genome_strand>
        <mrna_strand>CTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA.....................................................................................................................CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG.....................................................................................................GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333976" ref_strand="+" ref_description="SGN-E333976 [cTOD-24-C1]">
      <seq>gggagagggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctccaatgttgctacacgagacactgacatgtcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatcaatccttgcctcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="125059" stop="122632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124760" g_stop="124472" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124019" g_stop="123896" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="413" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123037" g_stop="122934" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="517" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E333976" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124760" e_stop="124472"/>
          <exon e_start="124019" e_stop="123896"/>
          <exon e_start="123037" e_stop="122934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA</genome_strand>
        <mrna_strand>GGGAGAGGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706753" ref_strand="+" ref_description="SGN-E706753 [FA30DC12]">
      <seq>gttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtaggcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctccaatgttgctacacgagacactgacatgtcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtacaaatgatcagtcaaatccgacagatatgagtaagctgttggcagatcaatcatttgtgtcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="125413" stop="122646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125113" g_stop="124908" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124781" g_stop="124472" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="516" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124019" g_stop="123896" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="640" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123037" g_stop="122946" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="732" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E706753" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125113" e_stop="124908"/>
          <exon e_start="124781" e_stop="124472"/>
          <exon e_start="124019" e_stop="123896"/>
          <exon e_start="123037" e_stop="122946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCA</genome_strand>
        <mrna_strand>GTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGGCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706160" ref_strand="+" ref_description="SGN-E706160 [FA29AG03]">
      <seq>cgtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctccaatgttgctacacgagacactgacatgtcagaagcggcttctgaagatcaagacttggcacttgctcttcaactgtctgtgcaagacagtacaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127356" stop="122702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127057" g_stop="127005" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="168" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="378" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124781" g_stop="124472" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="688" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124019" g_stop="123896" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="812" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123037" g_stop="123002" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="848" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E706160" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127057" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124472"/>
          <exon e_start="124019" e_stop="123896"/>
          <exon e_start="123037" e_stop="123002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTGGTACGTTATGATATCTGCAGTCTTAAATGGTGATATGCTGGTATCCTGTCACAACCTCATAGATACATAGTTTTAACTGTTAGCAACATACCTAACCCAGTTAAGTTCATTCACAATATTTATTCCTTGTTTTCTTGCATTTCTCACAACGTACCTAACCTAGGATGTGCATAACTAATCTTGACTTATTCTATGCACTTCTAATGATTTCCTGATCGAAAACAACTATTCCCTCTGCCTCAATTTATGTGGCGTGGGTGACGAGCACTTTATTTAAGAAAGAATGGAAGACTTAAAACTTGTGGCCTGAAACAAGTCATGGGCATTTATGTGGCTATAATTCATCTCATTAAGCATAAAATGAGAGGTTTAAAGTTAAGCTGTTTCTAAGTATAGAAAAGTGTTCTTTTTTTGGGCAAATTTAGAAGGGAAGTGTGCCACAACATGAGTATTGTATTTTGAAAAGTTGATGTTTGAAGGAAGAGAGGGAGCGGGGGCCCCACTCCTCTGGTTCAAAAGAAAAAACGAGCACCGATCTGATCTCCTCTCCGTGTTTCTCGATATGATAATATATGATAGAATGGGCTCACATAGTAGTTAAGGTTTATTTTTTGAAGAAATGCCTATTATTTTATGCTTTACTTAACCTTTTTTGTCCTGAAATTGGCCTTTAATTGCCAATGGAGGTTGTGTTAGACTCTATTACTTGGCTGTTCATGGCACTGGCTTACCCTTATCAAAATCCCCAATTCCTTGAAAAGGTCGAAGCTTGCACAGTATCCTTTGTAGTTGTTACCTTACAAGTTCCGCTCATTATTGCACACTTCTGATTTGTCTCGAACCTTCTGGTGCTTGCAGCTCTTCAACTGTCTGTGCAAGACAGTACAAATGATC</genome_strand>
        <mrna_strand>CGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739420" ref_strand="+" ref_description="SGN-E739420 [LC17BE11]">
      <seq>catatgttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctccaatgtgctacacgagacactgacatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127591" stop="123631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127292" g_stop="127236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="163" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="278" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="488" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124781" g_stop="124472" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="798" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124019" g_stop="123931" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="886" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E739420" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127292" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124472"/>
          <exon e_start="124019" e_stop="123931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTC</genome_strand>
        <mrna_strand>CATATGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATG-TGCTACACGAGACACTGACATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701400" ref_strand="+" ref_description="SGN-E701400 [FA15DE02]">
      <seq>atcgttaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcangatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgttgagaatgccttgntacagcaagcccttgcaatgtcgatggatgactcgtcctccatgttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127634" stop="123650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127334" g_stop="127236" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="205" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="320" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="530" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124781" g_stop="124472" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="840" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124019" g_stop="123950" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="909" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E701400" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127334" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124472"/>
          <exon e_start="124019" e_stop="123950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTA</genome_strand>
        <mrna_strand>ATCGTTAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCANGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGAGAATGCCTTGNTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCC-ATGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736065" ref_strand="+" ref_description="SGN-E736065 [LC04AH01]">
      <seq>catatggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaactgacctaatggatgatgagaatgccttgttacagcaagcccttgcaatgtcgatggatgactcgtcctcccatgttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127591" stop="123650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127293" g_stop="127236" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="164" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="279" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="489" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124781" g_stop="124472" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="799" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124019" g_stop="123950" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="869" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E736065" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127293" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124472"/>
          <exon e_start="124019" e_stop="123950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATGGTTCTTATCTTATCCATATTCTTCATATCTGATACTTCTGAATGTTAGTTGGAAAAAAGAACTTTTTTCGTTCTTTTGGATGTAACTAAATGTGATATTTCCTATCAACTGTTCAAGTTTGAGATTGTTTTGGTATATGGAATTTTTTCTCCTTTTCTGTGGGGAGGTGGGGTGCAAGACTCTACTGGTTAGCCGAACCATGTATTACACATTGAGTTTCTGGAATTGCATCAATCCTCTATTTTCTTGGACTTCCTTAAATACCTTAGTAAGAGTTGTTCTGGCATTGCACTTTACCTTGTTCACACTCATGCAAGAGGATATTGTTTCCTGTAGTTTTACACTGAAAATTTTCTTTAATAAAACTGGGTGTTAGCTTGAAGGGTATTTGATGCTGGCCTTTTGGAAGTCAAGATGAAATAACACTTCAATTATAATTGGATCTCTTGCAGGATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTA</genome_strand>
        <mrna_strand>CATATGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCCATGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368733" ref_strand="-" ref_description="SGN-E368733 [TUS-22-J4](-)">
      <seq>ccgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaccaagagaaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcaggaacttctgagcctgaaagcaaagcaacctgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="125426" stop="124176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125214" g_stop="125199" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="226" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124781" g_stop="124487" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="521" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E368733" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="125214" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAA</genome_strand>
        <mrna_strand>CCGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727793" ref_strand="+" ref_description="SGN-E727793 [LA15DA07]">
      <seq>atttatttttcagagagaacgaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcangaagcagctgcaaagaaggctgcagaagaagctggtacccagaagaaggagaaaatcagtctacttctcaggatgttgctatggctgaaaatgtcaatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127832" stop="124210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127532" g_stop="127445" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="202" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="308" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="423" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="633" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124510" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="904" r_length="271" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E727793" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127532" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAG</genome_strand>
        <mrna_strand>ATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCANGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGT-ACCCAGAAGAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730096" ref_strand="+" ref_description="SGN-E730096 [LA23AB12]">
      <seq>atttttcagagagaacgaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaaggctgcagaagaagctggtaaaccagagaaaagagaaaatcagtctacttctcaggatgttgctatggctgaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127828" stop="124218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127528" g_stop="127445" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="198" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="304" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="419" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="629" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124518" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="893" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E730096" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127528" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGT</genome_strand>
        <mrna_strand>ATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAAACCAGAGAAAAGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737529" ref_strand="+" ref_description="SGN-E737529 [LC10AH07]">
      <seq>ggctgcaggaattcggcacgaggataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggcaggaagcagctgcaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127591" stop="124296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127287" g_stop="127236" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="79" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="185" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="300" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="510" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124781" g_stop="124596" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="696" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E737529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127287" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAA</genome_strand>
        <mrna_strand>GTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718992" ref_strand="+" ref_description="SGN-E718992 [FC06BG07]">
      <seq>aatcggccgaattaaattccttccaatttatttttcagagagaacgaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127849" stop="124314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127546" g_stop="127445" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="227" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="333" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="448" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="658" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124614" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="826" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E718992" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127546" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCA</genome_strand>
        <mrna_strand>TTAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689777" ref_strand="+" ref_description="SGN-E689777 [LH_Ea01M15]">
      <seq>tgatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgactagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggataattgtttttgctggcagccctgttaaatatgacaagaaagtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggggaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaatggaggaagaaagggcgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127807" stop="124315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127508" g_stop="127445" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="178" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="284" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="399" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="609" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124615" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="776" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E689777" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127508" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGC</genome_strand>
        <mrna_strand>TGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACTAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATAATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAAGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGGGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721949" ref_strand="+" ref_description="SGN-E721949 [FC15DA11]">
      <seq>gggcgaattggcggccaatcggccgaattgaaattccttccaattcatttttcagagagaacgaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggatttgctgctgctgctgcagcggctgctgctggtggagtgtctggatatgattttggtgtagatcctaatttggatccagaacttgctctcgcactccgagtttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127849" stop="124335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127546" g_stop="127445" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="130" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="244" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="350" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="465" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="675" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124635" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="822" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E721949" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127546" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAAT</genome_strand>
        <mrna_strand>TGAAATTCCTTCCAATTCATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553980" ref_strand="+" ref_description="SGN-E553980 [cTSC-2-N17]">
      <seq>ccgctacgcgaactatcctgtatcttcttcggattgtgatttttcctccttaaagcaccaactccctccgcaagtaaactcaaattccttccaatttatttttcagagagaacgaaaagatttctcagtaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaggtggcagtggattttgctgctgctgctgcaacggctgctgctggtggagtgtctggatatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127925" stop="124388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127625" g_stop="127445" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="293" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="399" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="514" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="724" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124688" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="819" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E553980" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127625" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTACGCGAACTATCCTGTATCTTCTTCGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGA-TTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTT</genome_strand>
        <mrna_strand>CCGCTACGCGAACTATCCTGTATCTTCTTCGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAG--TAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTTGCTGCTGCTGCTGCAACGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344863" ref_strand="+" ref_description="SGN-E344863 [cTOF-21-B23]">
      <seq>tttctcagtttaatcttccattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatgggagaaggtngcagtggatttgctgctgctgctgcagcggctgctgctgggtggagtgtctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127805" stop="124396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127505" g_stop="127445" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="174" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="280" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="395" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="605" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124696" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="693" r_length="88" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E344863" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127505" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGAT-GGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCT-GGTGGAGTGTCTGGAT</genome_strand>
        <mrna_strand>TTTCTCAGTTTAATCTTCC-ATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGGAGAAGGTNGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGGTGGAGTGTCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212164" ref_strand="+" ref_description="SGN-E212164 [cLEC-75-H22]">
      <seq>gagagagagagaactaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgatggagaaagtggcagtggatttgctgctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127821" stop="124427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127526" g_stop="127445" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="196" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="302" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="417" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="627" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124727" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="682" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E212164" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127526" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCT</genome_strand>
        <mrna_strand>GAGAGAGAGAGAACTAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGATGGAGAAAGTGGCAGTGGATTTGCTGCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202972" ref_strand="+" ref_description="SGN-E202972 [cLEB-1-A16]">
      <seq>gcacgagaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127812" stop="124460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127518" g_stop="127445" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="188" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="294" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="409" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="619" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124781" g_stop="124760" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="641" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E202972" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127518" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGAT</genome_strand>
        <mrna_strand>GCACGAGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275943" ref_strand="+" ref_description="SGN-E275943 [cLEN-12-D11]">
      <seq>gaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgatgttctcataagtactcctattttcactggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127612" stop="124460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127312" g_stop="127236" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="183" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="298" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125117" g_stop="124908" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="508" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124781" g_stop="124760" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="530" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E275943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127312" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124908"/>
          <exon e_start="124781" e_stop="124760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAGGTGATCCCTGATATAACCATCTTCTTATCCTACCATTTTGTTATCATTACTAAATAAGATTTTTTCTGCCTGTACTTGTGAAAAGCAATTCCTTAATAAGTTGTATCCCTCATCTGTCATCGGCAGTACTCCTATTTTCACTGGTGAT</genome_strand>
        <mrna_strand>GAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG..............................................................................................................................TACTCCTATTTTCACTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698457" ref_strand="+" ref_description="SGN-E698457 [FA06BF01]">
      <seq>tggtgctcgaggcgacaatgatctgcctcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctactcccgagaatacagttggaattttgacgatggctggcaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggcgagatgaatttggctgctggaatccaggcagcccagttggctttgaagccccgaccaaacaacaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaacgttgaagaagaatagtgtagctcttgatgtggttaattttggtgaacatgatgaagggaaagctgagaagctacaggcccctacttgctgcgcttactaccaacgaaggtagctacatcattcctattcctcctggtcctaatgctctctctgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127653" stop="124615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127455" g_stop="127445" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="125" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="231" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="346" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124915" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="550" r_length="204" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E698457" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127455" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGG-CACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTC</genome_strand>
        <mrna_strand>TGGTGCTCGAG...............................................................................................GCGACAATGATCTGCCTCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTACTCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGCAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGCGAGATGAATTTGGCTGCTGGAATCCAGGCAGCCCAGTTGGCTTTGAAGCCCCGACCAAACAACAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAACGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAACATGATGAAGGGAAAGCTGAGAAGCTACAGGCCCCTACTTGCTGCGCTTACTACCAACGAAGGTAGCTACATCATTCCTATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331511" ref_strand="+" ref_description="SGN-E331511 [cTOD-9-G20]">
      <seq>tcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatgattgggagaaagttgaagaagaatagtgtagctcttgatgtggttaattttggtgaagatgatgaagggaaagctgagaagctagaggcactagttgctgcgcttaataccaacgacagtagtcacatcattcatattcctcctggtcctaatgctctctctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127801" stop="124619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127501" g_stop="127445" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="277" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="392" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="124919" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="591" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E331511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127501" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="124919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGAT</genome_strand>
        <mrna_strand>TCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319325" ref_strand="+" ref_description="SGN-E319325 [cTOB-16-P16]">
      <seq>cggattgtgatttttcctccttaaagcaccaactccctccgcaagtaaactcaaattccttccaatttatttttcagagagaacgaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggattattgtttttgctggcagccctgttaaatatgacaagaaggtcttggagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127896" stop="124783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127596" g_stop="127445" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="266" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="372" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125199" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="487" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125117" g_stop="125083" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="522" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E319325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127596" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125199"/>
          <exon e_start="125117" e_stop="125083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAGGTGATGTTCAGATGCTTTTCTCTGTTTTGTCTTTGCTGCTTTCAACTTTTGATCATTCTATTGACATTTCACTTCTTTCAGCCCTGTTAAATATGACAAGAAGGTCTTGGAGATGA</genome_strand>
        <mrna_strand>CGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG.................................................................................CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288657" ref_strand="+" ref_description="SGN-E288657 [cLES-8-D2]">
      <seq>taaactcaaattccttccaatttatttttcagagagaacgaaaagatttctcagtttaatcttccaattattggatttttcttcaatcgttaaccatggtgctcgaggcgacaatgatctgcatcgacaattcggagtggatgagaaacggtgattactcgcccaataggttccaagctctagcagacgctgttaatctaatctgtggtgccaaaacccagtctaatcccgagaatacagttggaattttgacgatggctggtaaaggggttcgagtgttagtcactccgaccagcgatcttggaaaaattttagcttgtatgcacggattggagataggcggtgagatgaatttggctgctggaatccaggtagcccagttggctttgaagcaccgacaaaacaagaagcaacaacaaaggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N19-UNxiF/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N19.2" temp_strand="-" temp_description="C02SLm0020N19.2  AC215474.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N19 sequenced_by:kribb upload_account_name:korea">
        <position start="127851" stop="124915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127551" g_stop="127445" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127349" g_stop="127236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="221" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127110" g_stop="127005" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="327" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125313" g_stop="125215" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="426" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N19.2" gen_strand="-" ref_id="SGN-E288657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N19.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127551" e_stop="127445"/>
          <exon e_start="127349" e_stop="127236"/>
          <exon e_start="127110" e_stop="127005"/>
          <exon e_start="125313" e_stop="125215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAGGTCTGCATAATGTTTATTGATTCCAATTTCAGTTCTATCTCTACAATGTTATAGCGAACTAGGGTTAATTTTTGTTAACTTTTTTTTTTAATCAGGCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAGGTTTCGATTATATTTCTCAAGTTATATTCTTTCTAGGGTTTATGATATATCTGGGTGTTCTCGTACTTTTAGTGAAAACTAATTGCGCTAAGTTTAACTGTTCCTTTTTTTTGTGTGTGATCCAGTCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACGGTAAGCTCTGTTCCTTGTTTTTTACGCTTTTTTAAAGGCATTTATTACAACTTATCTAGCCCAGAGCTTTCGTTACCTTGACATGGAATATATTGGGGCGCTAGGTTTATTAAGGTACCTGGAAAAGAGTAGACATGTGGAGATGAGTTTTGTATTTAGAAGTATCTTAAAGAGCTCAGTTTCCTCGGACTTTGTTTTGGGTGTAATGCATCATATATAGAAGAGGTGTGACTAGACAGATTATGATATCTATCATTAGAGGTGCTAGAGTACCTGTCATTGCATGTTTAACTACTTCTTGCCTTACTCCATGGGTTGTTACACTTGTCTTGTTAGTGACTTAATGTCATCTTCTTACTGTGCCTAATCACTTGTTCTATGCCTTTTCAGAAGGATAATATTGTATGTAAGGAGTATGATAGGCACACCAACAACAACATACACACTGGGGTTTTAAGAGGGTGTAGGTGGGGGTACACATACCTTATCCTTTCCTTCGGGGAGTTAGAGAGGCTGTTTCCAATTAGAACCTCTACCAAGAAAAATATTTTCAAAACAGGTCAAGAGCAAAAGGCTATGATGAAAATATGAAGAAGAGAAGTATTGACATCAAAATAGTATTGATAACAAAGTAAAAGGAACAACAATAACAATAAAATTTAGGTATATGATAAAAATAGCACACTAGTAGTGATTGATAAGGGGGATAAAGTGCTCTAAAGTAGAGTCAAGCCCTCCCATAGAATAGAGAGAAAATGTTCAACTACCTACTGGCCTTCTACCCTAATCCTTGACCTCCATGCTCTCTGGTCTAGAGCAATGTATCGAGGAAGTTCAATTAGTTGACTTCATAGGATTACTGTAATTGGCCTCTCTTAAGTTCAAATTTTTGGAGGTGACCAGCATGCCGAGGAATGCTAAGTTACCAGTTCAAATAACAAAAAGAATTTCAAAAAGGTGTCTTATGCTTAAGCTTAAATTCTGGAGTATTTACATGTAGAGTTGAAGCCACTTTGTAATTTCAAAGAAATTCCAGATGCATAGAGCCTGAGGAGAAAAGATGTCTGGAAAGAAAAAAAAGGGGGCGAGGGAGAATGATATGCCAATTATCTGTTAAGTGTATAGAGTAGCAAAATAGGAGTCAAGATTGGGGGCTAGGTAGGAAGTGAACTGCATAATTACATTATCTTGTGAATTGTTCTCCAGATGTTTGCACAAAAGGATACGTATGTATTATTGCTTTGATTTTCACTATAAAATCATCAAGAAAATCAGGAGAATGGTCCCAACTCCCATCAGTACTTTTGGTGTGTATTCATGGAACGATATTGTGCTATGTTTTGATGGTCTACTCCAAACCACTCGTTGAAAGCTAGGTGCCTATTGGGTCTATTTAGCTGGAGCAAACTGTCCCTTGTAAATAACACTGATCTTATATAGATTTTGGGAGCTTCCAGTCTTGGCTTAATCCCCATATTATGGAGCTATCTGAATCACTTTTGTACTCCTATATCTTCTCGATGCCATCAATGGATATATTTTTTTCATCAAAAAGGTGGTTCCGAAGTCCTTGTGGTGCTTGAGTTCTATATTACTGCATGACAGTAGTATCTCTTAGTGTCTTGGGCTGTTCAATGAACTCTTGTATTAACTCTTTAGTTGCTGATTTGGCCTTGTCTTCCCTCATTCAGGATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTA</genome_strand>
        <mrna_strand>TAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG...............................................................................................GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG.............................................................................................................................TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>104</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13488" PGL_stop="8909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13488" e_stop="13279"/>
            <exon e_start="11396" e_stop="10984"/>
            <exon e_start="10850" e_stop="10741"/>
            <exon e_start="10551" e_stop="10480"/>
            <exon e_start="9791" e_stop="9685"/>
            <exon e_start="9583" e_stop="9490"/>
            <exon e_start="9293" e_stop="9189"/>
            <exon e_start="9100" e_stop="8909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.590" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13488" e_stop="13279" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13278" i_stop="11397" i_length="1882"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11396" e_stop="10984" e_length="413"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.686">
            <gDNA_intron_boundary i_start="10983" i_stop="10851" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10850" e_stop="10741" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.590">
            <gDNA_intron_boundary i_start="10740" i_stop="10552" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10551" e_stop="10480" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.938" acc_prob="0.565">
            <gDNA_intron_boundary i_start="10479" i_stop="9792" i_length="688"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9791" e_stop="9685" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.974">
            <gDNA_intron_boundary i_start="9684" i_stop="9584" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9583" e_stop="9490" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9489" i_stop="9294" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9293" e_stop="9189" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9188" i_stop="9101" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9100" e_stop="8909" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13488" stop="13279"/>
              <exon start="11396" stop="11222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13369" stop="13279"/>
              <exon start="11396" stop="10984"/>
              <exon start="10850" stop="10812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13340" stop="13279"/>
              <exon start="11396" stop="11222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11282" stop="10984"/>
              <exon start="10850" stop="10741"/>
              <exon start="10551" stop="10480"/>
              <exon start="9791" stop="9689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10844" stop="10741"/>
              <exon start="10551" stop="10480"/>
              <exon start="9791" stop="9685"/>
              <exon start="9583" stop="9490"/>
              <exon start="9293" stop="9189"/>
              <exon start="9100" stop="8909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350311" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCCGGAAACCCGAGAGCCATTGGAACATCTTGAAGATGCATTGAGGAGGTCTTATTTATTGGTCAACAGCTGTCAGGACAGGAGCTACCTTTATCTGTTGGCTATGGGGTGGAACATTGTATACCAGTTTCGTAGGGCTCAGAACGAGATTGACCAATACTTGAAGATTATTCCTCTTATCACTCTGGTTGATAATGCTCGAGTCAGG : GAAAGGTTGGAATATATTGAAATGGACCAGCGTGAATACACACTGGAGGTTGAAGACATGAAGGTGCAAGAAGTGATTATGAAACCAGAGCCTTCTAAAGATGATACAATAATATTAACGAAGAATCTTTCCTGTTCTTACCCAAGAGTGCCTATCAATGAGGCAATTCAAAAAGAAAATGAGAAACTCCAACTAGAACTACAGCGCTCGCAAGCTAATTTAGATGTAGGTCAGTGTGAATTCATTCAGCATCTTCTGGATGTCACAGAAGTAGTTGCCAATAACTCTCTATCATTGAAGAGTTCACCTGCCAAACCTCTCAAAAAGTTGGATCAGAGTTACTCGAATGTTGATACTGAGAAGGTATATTATGACGATTATGCTAAAAGTGATGAGAAACAGACAACTTCAAG : AAACACTTCATCAGTTACATCAAGACATGACCTGCTTTCCTCAAAGGGTTCACATCAATATGAAGAGTGGCATTCAGATCTGCTGGGCTGCTGTTCAGAACCTCTCTTAT : GTATTAAAACCCTTTTCTTTCCTTGTGGTACATTTTCTAGAATTGCCAGTGTTGCTGCGGACAGGCATATAT : CTTCAGCGGATGCTTGTAATGAATTAATGGCTTATTCCTTGATACTGTCCTGCTGTTGTTACACATGTTGCATCAGAAAGAAGCTTCGGAAAAAGCTAAACATCAAG : GGAGGTTGTGTTGATGATTTTCTTTCTCATTTGATGTGCTGTTGCTGTGCTCTTGTCCAAGAATTGCGCGAAGTCAAGATACGTGGGACACATG : GTATAGAGAAGACGAAAATAAGCCCTCCAACCACTCAATTCATGGAATCCTAGGAAGCTAAACCTGGCTTTTTTAGCACAAAATATCAGAAAGCACTATATGGAG : GTTCGGTGTGTATAATTGACCCAGAGTTGTTCATTCGTTTACATGGTTACTGGTGACTATACATGTATGTGATGTAAGAATCTGTTCTATGTGGTGTACATGCAGGAATATTATGGTGTAACTATGGATGAATATCATGACGTATTTTTTGTGAAAATAAAAGATAACAACTACTAGGTTGTTGCAGTTCCA</gDNA_template>
            <first_frame> Y  P  E  T  R  E  P  L  E  H  L  E  D  A  L  R  R  S  Y  L  L  V  N  S  C  Q  D  R  S  Y  L  Y  L  L  A  M  G  W  N  I  V  Y  Q  F  R  R  A  Q  N  E  I  D  Q  Y  L  K  I  I  P  L  I  T  L  V  D  N  A  R  V  R  :  E  R  L  E  Y  I  E  M  D  Q  R  E  Y  T  L  E  V  E  D  M  K  V  Q  E  V  I  M  K  P  E  P  S  K  D  D  T  I  I  L  T  K  N  L  S  C  S  Y  P  R  V  P  I  N  E  A  I  Q  K  E  N  E  K  L  Q  L  E  L  Q  R  S  Q  A  N  L  D  V  G  Q  C  E  F  I  Q  H  L  L  D  V  T  E  V  V  A  N  N  S  L  S  L  K  S  S  P  A  K  P  L  K  K  L  D  Q  S  Y  S  N  V  D  T  E  K  V  Y  Y  D  D  Y  A  K  S  D  E  K  Q  T  T  S  R :   N  T  S  S  V  T  S  R  H  D  L  L  S  S  K  G  S  H  Q  Y  E  E  W  H  S  D  L  L  G  C  C  S  E  P  L  L   : C  I  K  T  L  F  F  P  C  G  T  F  S  R  I  A  S  V  A  A  D  R  H  I   : S  S  A  D  A  C  N  E  L  M  A  Y  S  L  I  L  S  C  C  C  Y  T  C  C  I  R  K  K  L  R  K  K  L  N  I  K  :  G  G  C  V  D  D  F  L  S  H  L  M  C  C  C  C  A  L  V  Q  E  L  R  E  V  K  I  R  G  T  H   : G  I  E  K  T  K  I  S  P  P  T  T  Q  F  M  E  S  *  E  A  K  P  G  F  F  S  T  K  Y  Q  K  A  L  Y  G   : G  S  V  C  I  I  D  P  E  L  F  I  R  L  H  G  Y  W  *  L  Y  M  Y  V  M  *  E  S  V  L  C  G  V  H  A  G  I  L  W  C  N  Y  G  *  I  S  *  R  I  F  C  E  N  K  R  *  Q  L  L  G  C  C  S  S  </first_frame>
            <second_frame>  I  R  K  P  E  S  H  W  N  I  L  K  M  H  *  G  G  L  I  Y  W  S  T  A  V  R  T  G  A  T  F  I  C  W  L  W  G  G  T  L  Y  T  S  F  V  G  L  R  T  R  L  T  N  T  *  R  L  F  L  L  S  L  W  L  I  M  L  E  S  G :   K  G  W  N  I  L  K  W  T  S  V  N  T  H  W  R  L  K  T  *  R  C  K  K  *  L  *  N  Q  S  L  L  K  M  I  Q  *  Y  *  R  R  I  F  P  V  L  T  Q  E  C  L  S  M  R  Q  F  K  K  K  M  R  N  S  N  *  N  Y  S  A  R  K  L  I  *  M  *  V  S  V  N  S  F  S  I  F  W  M  S  Q  K  *  L  P  I  T  L  Y  H  *  R  V  H  L  P  N  L  S  K  S  W  I  R  V  T  R  M  L  I  L  R  R  Y  I  M  T  I  M  L  K  V  M  R  N  R  Q  L  Q   : E  T  L  H  Q  L  H  Q  D  M  T  C  F  P  Q  R  V  H  I  N  M  K  S  G  I  Q  I  C  W  A  A  V  Q  N  L  S  Y  :  V  L  K  P  F  S  F  L  V  V  H  F  L  E  L  P  V  L  L  R  T  G  I  Y  :  L  Q  R  M  L  V  M  N  *  W  L  I  P  *  Y  C  P  A  V  V  T  H  V  A  S  E  R  S  F  G  K  S  *  T  S  R :   E  V  V  L  M  I  F  F  L  I  *  C  A  V  A  V  L  L  S  K  N  C  A  K  S  R  Y  V  G  H  M  :  V  *  R  R  R  K  *  A  L  Q  P  L  N  S  W  N  P  R  K  L  N  L  A  F  L  A  Q  N  I  R  K  H  Y  M  E  :  V  R  C  V  *  L  T  Q  S  C  S  F  V  Y  M  V  T  G  D  Y  T  C  M  *  C  K  N  L  F  Y  V  V  Y  M  Q  E  Y  Y  G  V  T  M  D  E  Y  H  D  V  F  F  V  K  I  K  D  N  N  Y  *  V  V  A  V  P </second_frame>
            <third_frame>   S  G  N  P  R  A  I  G  T  S  *  R  C  I  E  E  V  L  F  I  G  Q  Q  L  S  G  Q  E  L  P  L  S  V  G  Y  G  V  E  H  C  I  P  V  S  *  G  S  E  R  D  *  P  I  L  E  D  Y  S  S  Y  H  S  G  *  *  C  S  S  Q   : G  K  V  G  I  Y  *  N  G  P  A  *  I  H  T  G  G  *  R  H  E  G  A  R  S  D  Y  E  T  R  A  F  *  R  *  Y  N  N  I  N  E  E  S  F  L  F  L  P  K  S  A  Y  Q  *  G  N  S  K  R  K  *  E  T  P  T  R  T  T  A  L  A  S  *  F  R  C  R  S  V  *  I  H  S  A  S  S  G  C  H  R  S  S  C  Q  *  L  S  I  I  E  E  F  T  C  Q  T  S  Q  K  V  G  S  E  L  L  E  C  *  Y  *  E  G  I  L  *  R  L  C  *  K  *  *  E  T  D  N  F  K  :  K  H  F  I  S  Y  I  K  T  *  P  A  F  L  K  G  F  T  S  I  *  R  V  A  F  R  S  A  G  L  L  F  R  T  S  L  M :   Y  *  N  P  F  L  S  L  W  Y  I  F  *  N  C  Q  C  C  C  G  Q  A  Y  I :   F  S  G  C  L  *  *  I  N  G  L  F  L  D  T  V  L  L  L  L  H  M  L  H  Q  K  E  A  S  E  K  A  K  H  Q   : G  R  L  C  *  *  F  S  F  S  F  D  V  L  L  L  C  S  C  P  R  I  A  R  S  Q  D  T  W  D  T  W :   Y  R  E  D  E  N  K  P  S  N  H  S  I  H  G  I  L  G  S  *  T  W  L  F  *  H  K  I  S  E  S  T  I  W  R :   F  G  V  Y  N  *  P  R  V  V  H  S  F  T  W  L  L  V  T  I  H  V  C  D  V  R  I  C  S  M  W  C  T  C  R  N  I  M  V  *  L  W  M  N  I  M  T  Y  F  L  *  K  *  K  I  T  T  T  R  L  L  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13488" stop="13279"/>
                    <exon start="11396" stop="10984"/>
                    <exon start="10850" stop="10741"/>
                    <exon start="10551" stop="10480"/>
                    <exon start="9791" stop="9685"/>
                    <exon start="9583" stop="9490"/>
                    <exon start="9293" stop="9241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPETREPLEHLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRRAQNEIDQYLKIIPLITLVDNARVRERLEYIEMDQREYTLEVEDMKVQEVIMKPEPSKDDTIILTKNLSCSYPRVPINEAIQKENEKLQLELQRSQANLDVGQCEFIQHLLDVTEVVANNSLSLKSSPAKPLKKLDQSYSNVDTEKVYYDDYAKSDEKQTTSRNTSSVTSRHDLLSSKGSHQYEEWHSDLLGCCSEPLLCIKTLFFPCGTFSRIASVAADRHISSADACNELMAYSLILSCCCYTCCIRKKLRKKLNIKGGCVDDFLSHLMCCCCALVQELREVKIRGTHGIEKTKISPPTTQFMES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="24499" PGL_stop="24945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24499" e_stop="24945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="24499" e_stop="24945" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24499" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24499" stop="24804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24500" stop="24945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTGTATCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTACAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAATAGAATTATACACTTCTGTGTATAAAGCGAGAGAGACGAGCAAGAATGGAGAGTGGTGAGCGAGATTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTGGATTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  V  S  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  T  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  K  N  R  I  I  H  F  C  V  *  S  E  R  D  E  Q  E  W  R  V  V  S  E  I  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  D  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  Y  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  Q  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  K  I  E  L  Y  T  S  V  Y  K  A  R  E  T  S  K  N  G  E  W  *  A  R  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  W  I  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  C  I  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  *  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  G  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N19.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="35931" PGL_stop="40963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35931" e_stop="35958"/>
            <exon e_start="36035" e_stop="36094"/>
            <exon e_start="36749" e_stop="36865"/>
            <exon e_start="37134" e_stop="37373"/>
            <exon e_start="37457" e_stop="37522"/>
            <exon e_start="37643" e_stop="37732"/>
            <exon e_start="38639" e_stop="38728"/>
            <exon e_start="39000" e_stop="39089"/>
            <exon e_start="39361" e_stop="39429"/>
            <exon e_start="39509" e_stop="39589"/>
            <exon e_start="39698" e_stop="39805"/>
            <exon e_start="39895" e_stop="39998"/>
            <exon e_start="40135" e_stop="40248"/>
            <exon e_start="40340" e_stop="40963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35931" e_stop="35958" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35959" i_stop="36034" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36035" e_stop="36094" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="36095" i_stop="36748" i_length="654"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36749" e_stop="36865" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36866" i_stop="37133" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37134" e_stop="37373" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.914" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37374" i_stop="37456" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37457" e_stop="37522" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.651" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37523" i_stop="37642" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37643" e_stop="37732" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37733" i_stop="38638" i_length="906"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38639" e_stop="38728" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38729" i_stop="38999" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39000" e_stop="39089" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.738">
            <gDNA_intron_boundary i_start="39090" i_stop="39360" i_length="271"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39361" e_stop="39429" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39430" i_stop="39508" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="39509" e_stop="39589" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39590" i_stop="39697" i_length="108"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="39698" e_stop="39805" e_length="108"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="39806" i_stop="39894" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="39895" e_stop="39998" e_length="104"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39999" i_stop="40134" i_length="136"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="40135" e_stop="40248" e_length="114"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="40249" i_stop="40339" i_length="91"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="40340" e_stop="40963" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35931" stop="35958"/>
              <exon start="36035" stop="36094"/>
              <exon start="36749" stop="36865"/>
              <exon start="37134" stop="37323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37149" stop="37373"/>
              <exon start="37457" stop="37522"/>
              <exon start="37643" stop="37732"/>
              <exon start="38639" stop="38728"/>
              <exon start="39000" stop="39089"/>
              <exon start="39361" stop="39429"/>
              <exon start="39509" stop="39589"/>
              <exon start="39698" stop="39730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37149" stop="37373"/>
              <exon start="37457" stop="37522"/>
              <exon start="37643" stop="37732"/>
              <exon start="38639" stop="38728"/>
              <exon start="39000" stop="39032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38663" stop="38728"/>
              <exon start="39000" stop="39089"/>
              <exon start="39361" stop="39429"/>
              <exon start="39509" stop="39589"/>
              <exon start="39698" stop="39805"/>
              <exon start="39895" stop="39998"/>
              <exon start="40135" stop="40248"/>
              <exon start="40340" stop="40345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38663" stop="38728"/>
              <exon start="39000" stop="39089"/>
              <exon start="39361" stop="39429"/>
              <exon start="39509" stop="39589"/>
              <exon start="39698" stop="39805"/>
              <exon start="39895" stop="39998"/>
              <exon start="40135" stop="40226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38663" stop="38728"/>
              <exon start="39000" stop="39089"/>
              <exon start="39361" stop="39429"/>
              <exon start="39509" stop="39589"/>
              <exon start="39698" stop="39805"/>
              <exon start="39895" stop="39998"/>
              <exon start="40135" stop="40199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40151" stop="40248"/>
              <exon start="40340" stop="40954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40185" stop="40248"/>
              <exon start="40340" stop="40963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAACTATGCTGCTTTAAGTGCAGAA : GTTTTACCTGAGTTCTTCCAGGTTGAAGCTTTCGCAAAACTTAATAGTGCCATAGGCAAG : GTGATAGAGGCTCAAGAAGACATGCCTATTGCCGGAGTGGTGACATTGTATTCATCCCTTTTGACATTTTCTCTTCATGTCCACCCTGATCGCCTTGATTATGTAGATCAGATTCTG : GGTGCATGTGTACAGAAACTTTCTGGAAAAGGAAAGCTCAAAGACAACAAAGCAACAAAACAGATAGTGGCCCTACTAAGTGCTCCTCTGGAGAAGTATAAGGATATAGATACTGCGCTAAAGCTGTCAAATTATCCTCGTCTTATGGAGAATCTTGACGATTCAACTAGTAAAGAGATGGCTAATGTTTTAGTACAAAATATTTTGAAAAATAAGACTTGCATTTCAACTGCTGAAAAG : GTTGAGGCACTTTTTGAGTTAATGAAAGCACTAATTCGAGATTTGGATGAGGGTGTTGATGATGAG : CTTGATGAAGATGATTTCCAGGAAGAGCAGAATTCTGTTGCGCAGCTTATTCAAATGCTTCACAATGATGATCCTGAAGAGATGCTGAAG : ATTATTTGTGCTGTGAAGAAGCACATTTTGACAGGAGGGCCAAAGAGACTTCCTTTTACTGTCCCTCCCCTTATTTTCAACTCACTAAAG : TTTGTTAGGCGACTACATAGTCATGATGAAAATGTTCCTGAGGAAGAGTCATCTGCTATGCCTAAGAAATTCTTTCAGATTCTGAATCAG : ATTATTGAGGCGCTCTCAATTGTTCCTGTACCTGAACTAGCACTGAAGCTGTACCTGGAGTGTGCTGAG : GCTGCCAATGACTCTGACATAGAGCCTGTTGCCTATGAATTTTTCACTCAAGCTTATATACTATATGAAGAAGAAATTTCG : GACTCCAAAGCACAGGTGACTGCAATACACTTGATAATAGGAACTCTTCAGAGAATGCACATCTTTGGTGTTGAGAACAGGGACACGTTAACGCACAAGGCTACAGGG : TACTCTGCAAAGCTCTTGAAGAAACCTGATCAATGTAGAGCTGTGTATGCTTGTTCGCATCTTTTCTGGGTTGACGATCAGGACAATATCAAGGATGGAGAAAG : GGTTTTGCTTTGCTTAAAGCGGGCCTTAAGAATTGCAAATGCTGCTCAACAAATGTCCAATGCAACCCGAGGCAGCAGTGGATCTGTCTTGCTCTTTATAGAAATTCTAAACAA : GTATCTGTATTTCTTTGAGAAGGGGGTCTCACAAATTAATGTTGCCTCCGTCCAGAGCCTGATTGAGCTAATCACAACTGAAATGCAAAGTGAAAATACAACAGCAGATCCTGCAGCAGATGCCTTCTTTGCAAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGCACATTTTTCTTACAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGTAGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACAC</gDNA_template>
            <first_frame> F  E  L  C  C  F  K  C  R   : S  F  T  *  V  L  P  G  *  S  F  R  K  T  *  *  C  H  R  Q   : G  D  R  G  S  R  R  H  A  Y  C  R  S  G  D  I  V  F  I  P  F  D  I  F  S  S  C  P  P  *  S  P  *  L  C  R  S  D  S   : G  C  M  C  T  E  T  F  W  K  R  K  A  Q  R  Q  Q  S  N  K  T  D  S  G  P  T  K  C  S  S  G  E  V  *  G  Y  R  Y  C  A  K  A  V  K  L  S  S  S  Y  G  E  S  *  R  F  N  *  *  R  D  G  *  C  F  S  T  K  Y  F  E  K  *  D  L  H  F  N  C  *  K   : G  *  G  T  F  *  V  N  E  S  T  N  S  R  F  G  *  G  C  *  *  *   : A  *  *  R  *  F  P  G  R  A  E  F  C  C  A  A  Y  S  N  A  S  Q  *  *  S  *  R  D  A  E   : D  Y  L  C  C  E  E  A  H  F  D  R  R  A  K  E  T  S  F  Y  C  P  S  P  Y  F  Q  L  T  K   : V  C  *  A  T  T  *  S  *  *  K  C  S  *  G  R  V  I  C  Y  A  *  E  I  L  S  D  S  E  S   : D  Y  *  G  A  L  N  C  S  C  T  *  T  S  T  E  A  V  P  G  V  C  *   : G  C  Q  *  L  *  H  R  A  C  C  L  *  I  F  H  S  S  L  Y  T  I  *  R  R  N  F   : G  L  Q  S  T  G  D  C  N  T  L  D  N  R  N  S  S  E  N  A  H  L  W  C  *  E  Q  G  H  V  N  A  Q  G  Y  R   : V  L  C  K  A  L  E  E  T  *  S  M  *  S  C  V  C  L  F  A  S  F  L  G  *  R  S  G  Q  Y  Q  G  W  R  K  :  G  F  A  L  L  K  A  G  L  K  N  C  K  C  C  S  T  N  V  Q  C  N  P  R  Q  Q  W  I  C  L  A  L  Y  R  N  S  K  Q  :  V  S  V  F  L  *  E  G  G  L  T  N  *  C  C  L  R  P  E  P  D  *  A  N  H  N  *  N  A  K  *  K  Y  N  S  R  S  C  S  R  C  L  L  C  K  H  L  A  I  H  P  V  P  E  G  *  R  W  C  S  W  G  E  I  R  V  H  Q  L  I  I  K  *  H  F  S  K  E  L  R  S  W  C  H  R  S  S  T  F  F  L  Q  S  T  K  L  I  P  F  Q  L  A  L  E  K  N  A  F  D  N  G  L  A  E  A  A  E  K  M  H  I  Y  *  P  H  P  Y  A  V  I  S  *  *  R  L  L  L  L  *  Q  F  A  L  Q  L  *  L  P  S  A  C  H  C  Y  F  F  F  F  F  W  W  R  V  G  F  L  L  R  W  K  R  Q  G  V  E  K  *  F  I  N  L  *  F  R  N  V  I  M  T  S  T  R  I  I  C  P  S  V  L  Y  N  M  F  C  P  I  *  H </first_frame>
            <second_frame>  S  N  Y  A  A  L  S  A  E  :  V  L  P  E  F  F  Q  V  E  A  F  A  K  L  N  S  A  I  G  K  :  V  I  E  A  Q  E  D  M  P  I  A  G  V  V  T  L  Y  S  S  L  L  T  F  S  L  H  V  H  P  D  R  L  D  Y  V  D  Q  I  L  :  G  A  C  V  Q  K  L  S  G  K  G  K  L  K  D  N  K  A  T  K  Q  I  V  A  L  L  S  A  P  L  E  K  Y  K  D  I  D  T  A  L  K  L  S  N  Y  P  R  L  M  E  N  L  D  D  S  T  S  K  E  M  A  N  V  L  V  Q  N  I  L  K  N  K  T  C  I  S  T  A  E  K  :  V  E  A  L  F  E  L  M  K  A  L  I  R  D  L  D  E  G  V  D  D  E  :  L  D  E  D  D  F  Q  E  E  Q  N  S  V  A  Q  L  I  Q  M  L  H  N  D  D  P  E  E  M  L  K  :  I  I  C  A  V  K  K  H  I  L  T  G  G  P  K  R  L  P  F  T  V  P  P  L  I  F  N  S  L  K  :  F  V  R  R  L  H  S  H  D  E  N  V  P  E  E  E  S  S  A  M  P  K  K  F  F  Q  I  L  N  Q  :  I  I  E  A  L  S  I  V  P  V  P  E  L  A  L  K  L  Y  L  E  C  A  E  :  A  A  N  D  S  D  I  E  P  V  A  Y  E  F  F  T  Q  A  Y  I  L  Y  E  E  E  I  S  :  D  S  K  A  Q  V  T  A  I  H  L  I  I  G  T  L  Q  R  M  H  I  F  G  V  E  N  R  D  T  L  T  H  K  A  T  G  :  Y  S  A  K  L  L  K  K  P  D  Q  C  R  A  V  Y  A  C  S  H  L  F  W  V  D  D  Q  D  N  I  K  D  G  E  R :   V  L  L  C  L  K  R  A  L  R  I  A  N  A  A  Q  Q  M  S  N  A  T  R  G  S  S  G  S  V  L  L  F  I  E  I  L  N  K :   Y  L  Y  F  F  E  K  G  V  S  Q  I  N  V  A  S  V  Q  S  L  I  E  L  I  T  T  E  M  Q  S  E  N  T  T  A  D  P  A  A  D  A  F  F  A  S  T  L  R  Y  I  Q  F  Q  K  D  K  G  G  A  V  G  E  K  F  E  S  I  N  S  *  S  N  S  I  S  Q  R  N  Y  V  L  G  V  T  E  A  A  H  F  S  Y  K  V  Q  N  *  F  L  F  N  L  L  *  R  K  M  H  L  T  T  D  *  Q  K  Q  L  K  R  C  I  Y  T  D  H  T  P  T  Q  *  Y  P  N  K  D  C  Y  C  C  N  N  L  L  S  S  Y  D  F  R  V  P  A  T  V  T  F  F  F  F  F  G  G  E  *  V  F  F  *  G  G  R  D  K  E  W  R  S  S  S  L  I  C  S  S  E  M  *  L  *  R  V  L  E  *  F  V  P  Q  F  C  I  T  C  S  V  P  F  N   </second_frame>
            <third_frame>   R  T  M  L  L  *  V  Q  K :   F  Y  L  S  S  S  R  L  K  L  S  Q  N  L  I  V  P  *  A  R :   *  *  R  L  K  K  T  C  L  L  P  E  W  *  H  C  I  H  P  F  *  H  F  L  F  M  S  T  L  I  A  L  I  M  *  I  R  F  W :   V  H  V  Y  R  N  F  L  E  K  E  S  S  K  T  T  K  Q  Q  N  R  *  W  P  Y  *  V  L  L  W  R  S  I  R  I  *  I  L  R  *  S  C  Q  I  I  L  V  L  W  R  I  L  T  I  Q  L  V  K  R  W  L  M  F  *  Y  K  I  F  *  K  I  R  L  A  F  Q  L  L  K  R :   L  R  H  F  L  S  *  *  K  H  *  F  E  I  W  M  R  V  L  M  M  S :   L  M  K  M  I  S  R  K  S  R  I  L  L  R  S  L  F  K  C  F  T  M  M  I  L  K  R  C  *  R :   L  F  V  L  *  R  S  T  F  *  Q  E  G  Q  R  D  F  L  L  L  S  L  P  L  F  S  T  H  *  S :   L  L  G  D  Y  I  V  M  M  K  M  F  L  R  K  S  H  L  L  C  L  R  N  S  F  R  F  *  I  R :   L  L  R  R  S  Q  L  F  L  Y  L  N  *  H  *  S  C  T  W  S  V  L  R :   L  P  M  T  L  T  *  S  L  L  P  M  N  F  S  L  K  L  I  Y  Y  M  K  K  K  F  R :   T  P  K  H  R  *  L  Q  Y  T  *  *  *  E  L  F  R  E  C  T  S  L  V  L  R  T  G  T  R  *  R  T  R  L  Q  G :   T  L  Q  S  S  *  R  N  L  I  N  V  E  L  C  M  L  V  R  I  F  S  G  L  T  I  R  T  I  S  R  M  E  K   : G  F  C  F  A  *  S  G  P  *  E  L  Q  M  L  L  N  K  C  P  M  Q  P  E  A  A  V  D  L  S  C  S  L  *  K  F  *  T   : S  I  C  I  S  L  R  R  G  S  H  K  L  M  L  P  P  S  R  A  *  L  S  *  S  Q  L  K  C  K  V  K  I  Q  Q  Q  I  L  Q  Q  M  P  S  L  Q  A  P  C  D  T  S  S  S  R  R  I  K  V  V  Q  L  G  R  N  S  S  P  S  T  H  N  Q  I  A  F  L  K  G  I  T  F  L  V  S  Q  K  Q  H  I  F  L  T  K  Y  K  I  D  S  F  S  T  C  S  R  E  K  C  I  *  Q  R  T  S  R  S  S  *  K  D  A  Y  I  L  T  T  P  L  R  S  N  I  L  I  K  I  V  I  V  V  T  I  C  S  P  A  M  T  S  E  C  L  P  L  L  L  F  F  F  F  L  V  E  S  R  F  S  F  E  V  E  E  T  R  S  G  E  V  V  H  *  F  V  V  Q  K  C  D  Y  D  E  Y  *  N  N  L  S  L  S  F  V  *  H  V  L  S  H  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35932" stop="35958"/>
                    <exon start="36035" stop="36094"/>
                    <exon start="36749" stop="36865"/>
                    <exon start="37134" stop="37373"/>
                    <exon start="37457" stop="37522"/>
                    <exon start="37643" stop="37732"/>
                    <exon start="38639" stop="38728"/>
                    <exon start="39000" stop="39089"/>
                    <exon start="39361" stop="39429"/>
                    <exon start="39509" stop="39589"/>
                    <exon start="39698" stop="39805"/>
                    <exon start="39895" stop="39998"/>
                    <exon start="40135" stop="40248"/>
                    <exon start="40340" stop="40550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNYAALSAEVLPEFFQVEAFAKLNSAIGKVIEAQEDMPIAGVVTLYSSLLTFSLHVHPDRLDYVDQILGACVQKLSGKGKLKDNKATKQIVALLSAPLEKYKDIDTALKLSNYPRLMENLDDSTSKEMANVLVQNILKNKTCISTAEKVEALFELMKALIRDLDEGVDDELDEDDFQEEQNSVAQLIQMLHNDDPEEMLKIICAVKKHILTGGPKRLPFTVPPLIFNSLKFVRRLHSHDENVPEEESSAMPKKFFQILNQIIEALSIVPVPELALKLYLECAEAANDSDIEPVAYEFFTQAYILYEEEISDSKAQVTAIHLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNIKDGERVLLCLKRALRIANAAQQMSNATRGSSGSVLLFIEILNKYLYFFEKGVSQINVASVQSLIELITTEMQSENTTADPAADAFFASTLRYIQFQKDKGGAVGEKFESINS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="42380" PGL_stop="41322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42380" e_stop="42265"/>
            <exon e_start="42179" e_stop="42052"/>
            <exon e_start="41982" e_stop="41878"/>
            <exon e_start="41633" e_stop="41322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42380" e_stop="42265" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="42264" i_stop="42180" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42179" e_stop="42052" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42051" i_stop="41983" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41982" e_stop="41878" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41877" i_stop="41634" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41633" e_stop="41322" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42380" stop="42265"/>
              <exon start="42179" stop="42052"/>
              <exon start="41982" stop="41878"/>
              <exon start="41633" stop="41324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42374" stop="42265"/>
              <exon start="42179" stop="42052"/>
              <exon start="41982" stop="41878"/>
              <exon start="41633" stop="41322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42344" stop="42265"/>
              <exon start="42179" stop="42052"/>
              <exon start="41982" stop="41878"/>
              <exon start="41633" stop="41542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42295" stop="42265"/>
              <exon start="42179" stop="42052"/>
              <exon start="41982" stop="41878"/>
              <exon start="41633" stop="41346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACATCTTTTCTCTCCTTTTAACTTTTAAAGTCTTCTCATTATTAATGGCATCCAGGAGAATTCAAAAGGAGCTAAAAGACTTGCAAAGAGACCCTCCCACTTCATGCAGTGCAG : GTCCAGTAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTCAAACCTCCCAAG : GTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAATGGAGTCCTGCCCTCACCATATCCAAG : GTTTTGCTGTCCATATGTTCACTGCTAACAGATCCAAATCCAGATGATCCACTGGTTCCAGAAATTGCTCATATGTGCAAGACTGATAAAACCAAGTACGAGTCAATGGCTCGTAGTTGGACTCAAAAGTATGCCATGAACTGAGTCTCAACAAACACAAAATTATTGCTACAAGCAATATATAATATGTTCAGGAGAACTTTTGCTCTATGAAAATGAGAATTCAGTGACGGTTGGATGTATTTATATTATCGGGATTCGTTTTAAATAAAAAGGGTGATTTTATTTTTTCTGTTATTCAACAAGAGAATT</gDNA_template>
            <first_frame> Q  H  L  F  S  P  F  N  F  *  S  L  L  I  I  N  G  I  Q  E  N  S  K  G  A  K  R  L  A  K  R  P  S  H  F  M  Q  C  R :   S  S  S  S  G  Y  V  S  L  A  S  N  Y  Y  W  S  K  *  *  P  L  C  W  W  C  F  P  S  H  H  P  F  S  S  *  L  P  F  Q  T  S  Q   : G  G  F  Q  D  Q  S  F  S  S  K  Y  K  Q  *  W  K  Y  L  F  G  H  T  E  G  S  M  E  S  C  P  H  H  I  Q   : G  F  A  V  H  M  F  T  A  N  R  S  K  S  R  *  S  T  G  S  R  N  C  S  Y  V  Q  D  *  *  N  Q  V  R  V  N  G  S  *  L  D  S  K  V  C  H  E  L  S  L  N  K  H  K  I  I  A  T  S  N  I  *  Y  V  Q  E  N  F  C  S  M  K  M  R  I  Q  *  R  L  D  V  F  I  L  S  G  F  V  L  N  K  K  G  D  F  I  F  S  V  I  Q  Q  E  N  </first_frame>
            <second_frame>  N  I  F  S  L  L  L  T  F  K  V  F  S  L  L  M  A  S  R  R  I  Q  K  E  L  K  D  L  Q  R  D  P  P  T  S  C  S  A   : G  P  V  A  Q  D  M  F  H  W  Q  A  T  I  I  G  P  N  D  S  P  Y  A  G  G  V  F  Q  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  R  V  F  H  P  N  I  N  N  N  G  N  I  C  L  D  I  L  K  D  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  C  K  T  D  K  T  K  Y  E  S  M  A  R  S  W  T  Q  K  Y  A  M  N  *  V  S  T  N  T  K  L  L  L  Q  A  I  Y  N  M  F  R  R  T  F  A  L  *  K  *  E  F  S  D  G  W  M  Y  L  Y  Y  R  D  S  F  *  I  K  R  V  I  L  F  F  L  L  F  N  K  R  I </second_frame>
            <third_frame>   T  S  F  L  S  F  *  L  L  K  S  S  H  Y  *  W  H  P  G  E  F  K  R  S  *  K  T  C  K  E  T  L  P  L  H  A  V  Q  :  V  Q  *  L  R  I  C  F  I  G  K  Q  L  L  L  V  Q  M  I  A  L  M  L  V  V  F  S  K  S  P  S  I  F  L  L  I  T  L  S  N  L  P  R :   W  L  S  G  P  E  F  F  I  Q  I  *  T  I  M  E  I  F  V  W  T  Y  *  R  I  N  G  V  L  P  S  P  Y  P  R :   F  C  C  P  Y  V  H  C  *  Q  I  Q  I  Q  M  I  H  W  F  Q  K  L  L  I  C  A  R  L  I  K  P  S  T  S  Q  W  L  V  V  G  L  K  S  M  P  *  T  E  S  Q  Q  T  Q  N  Y  C  Y  K  Q  Y  I  I  C  S  G  E  L  L  L  Y  E  N  E  N  S  V  T  V  G  C  I  Y  I  I  G  I  R  F  K  *  K  G  *  F  Y  F  F  C  Y  S  T  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42379" stop="42265"/>
                    <exon start="42179" stop="42052"/>
                    <exon start="41982" stop="41878"/>
                    <exon start="41633" stop="41490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIFSLLLTFKVFSLLMASRRIQKELKDLQRDPPTSCSAGPVAQDMFHWQATIIGPNDSPYAGGVFQVTIHFPPDYPFKPPKVAFRTRVFHPNINNNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKTKYESMARSWTQKYAMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47467" PGL_stop="44032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47467" e_stop="46868"/>
            <exon e_start="46104" e_stop="46017"/>
            <exon e_start="45897" e_stop="45788"/>
            <exon e_start="45706" e_stop="45643"/>
            <exon e_start="44859" e_stop="44795"/>
            <exon e_start="44691" e_stop="44626"/>
            <exon e_start="44524" e_stop="44032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47467" e_stop="46868" e_length="600"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46867" i_stop="46105" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46104" e_stop="46017" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="46016" i_stop="45898" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45897" e_stop="45788" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="45787" i_stop="45707" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45706" e_stop="45643" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45642" i_stop="44860" i_length="783"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44859" e_stop="44795" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44794" i_stop="44692" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44691" e_stop="44626" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="44625" i_stop="44525" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="44524" e_stop="44032" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47467" stop="46868"/>
              <exon start="46104" stop="46017"/>
              <exon start="45897" stop="45788"/>
              <exon start="45706" stop="45643"/>
              <exon start="44859" stop="44835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47395" stop="46868"/>
              <exon start="46104" stop="46017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47395" stop="46868"/>
              <exon start="46104" stop="46045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47390" stop="46868"/>
              <exon start="46104" stop="46017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47390" stop="46868"/>
              <exon start="46104" stop="46017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47388" stop="46886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47378" stop="46868"/>
              <exon start="46104" stop="46017"/>
              <exon start="45897" stop="45788"/>
              <exon start="45706" stop="45643"/>
              <exon start="44859" stop="44832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47341" stop="46868"/>
              <exon start="46104" stop="46017"/>
              <exon start="45897" stop="45788"/>
              <exon start="45706" stop="45697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47341" stop="46868"/>
              <exon start="46104" stop="46045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46104" stop="46017"/>
              <exon start="45897" stop="45788"/>
              <exon start="45706" stop="45643"/>
              <exon start="44859" stop="44795"/>
              <exon start="44691" stop="44626"/>
              <exon start="44524" stop="44396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45804" stop="45788"/>
              <exon start="45706" stop="45643"/>
              <exon start="44859" stop="44795"/>
              <exon start="44691" stop="44626"/>
              <exon start="44524" stop="44032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44499" stop="44124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTATTTCCCGGCTAAAACAAAGGGTTACTTATAATACTGACTCAGAATGGAAAAAAATACAGAGATGAACACCCATTTATTTTCATCCTTTCTCTCTCTACCTCAAACTTTCTCTTTCTAGATCTGGGATCCCTAAATTTCTCCTCATTTTCTCTTTACCATTTCTCTATTCTCATTTTCATTCACCTTATTCCCTTTCCCCTCTTCTACAATTCTCTCTGAACTTTCCCTTTCGTAGAATTAGGGTTAGGGTTTCACCAAGAGAACCAAAGAAAACACCATTGGCATGTCTCGATTTTCTTCTCTGCTGGGTTTTCAAGCCATTCTGAAGAAACGACATTGAAAGGAATTGGAGAGGTTAAAAGAAACGGAAACAAGAAGCTCCAAGATACCACATTTAATCTCTTTTTTTCTTTTTAAATTTTTTCTGGGATCAGGTCTTCTAAAGAAGATCTGAAAAGAGGAGGGTTATTGTTGGTTTTCTGAATAGCCGGGAAAAATGAGTGCTTCAAGGTTTATCAAATGTGTTACCGTCGGCGATGGTGCCGTTGGAAAGACGTGTCTCTTGATTTCTTACACCAGCAATACCTTCCCCACG : GATTATGTGCCCACCGTGTTCGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACTGTCAACCTAGGGTTGTGGGATACTGCTG : GACAGGAGGATTACAATAGGTTAAGACCTCTGAGTTACCGTGGAGCTGATGTTTTCATTTTGGCATTCTCTCTCATTAGTAAAGCCAGCTATGAAAACGTTGCCAAGAAG : TGGATTCCTGAATTGAAGCATTATGCCCCCGGTGTTCCAATAGTGCTTGTTGGAACAAAACTAG : ATCTTCGGGATGATAAGCAATTCTTCGTAGACCATCCTGGTGCTGTGCCAATTACCACTGCTCAG : GGTGAAGAGCTGAGGAAAACAATTGGTGCACCTGCTTACATTGAATGTAGTTCAAAAACACAGCAG : AACGTGAAAGCAGTCTTTGATGCCGCTATCAAGGTCGTGCTCCAGCCACCCAAGCAGAAGAAAAAGAAGGGGAAGTCCCAAAAGGCATGTTCTATTTTGTGATCAACAGTAGGTCCAATGTTATTACTGGTCACACTTCTCCTTGTAACCTCTCTCTCGTATTCCTTTGTCATTTGTCTCGGAGGAAGTAGGAGGTCCATGTTGTATGTCTCATTTAAAATTACTAGTGATCTCTTGAATTGTCAGGTGGCTCGGTTTTCTGTGTAATGGCTGTGATCTCTAATTGTTTAGTCACACAGCACCTTTGTCGTAGGCCACTCTATTGTGCCCTCTCTGTTCTGATTTGCTTTATATGTATTTTAATGACCTGATGATCCAGTTAGAAAAAAAAAAAAAGGAAATTTTCCCGGCAATGTTGACAACATATTTCTCTGAACATATTAAACGTTTCTTTTTAGATATTGCATTCAAATATATTACTATTTTCTTTCAA</gDNA_template>
            <first_frame> H  Y  F  P  A  K  T  K  G  Y  L  *  Y  *  L  R  M  E  K  N  T  E  M  N  T  H  L  F  S  S  F  L  S  L  P  Q  T  F  S  F  *  I  W  D  P  *  I  S  P  H  F  L  F  T  I  S  L  F  S  F  S  F  T  L  F  P  F  P  S  S  T  I  L  S  E  L  S  L  S  *  N  *  G  *  G  F  T  K  R  T  K  E  N  T  I  G  M  S  R  F  S  S  L  L  G  F  Q  A  I  L  K  K  R  H  *  K  E  L  E  R  L  K  E  T  E  T  R  S  S  K  I  P  H  L  I  S  F  F  L  F  K  F  F  L  G  S  G  L  L  K  K  I  *  K  E  E  G  Y  C  W  F  S  E  *  P  G  K  M  S  A  S  R  F  I  K  C  V  T  V  G  D  G  A  V  G  K  T  C  L  L  I  S  Y  T  S  N  T  F  P  T  :  D  Y  V  P  T  V  F  D  N  F  S  A  N  V  V  V  N  G  S  T  V  N  L  G  L  W  D  T  A   : G  Q  E  D  Y  N  R  L  R  P  L  S  Y  R  G  A  D  V  F  I  L  A  F  S  L  I  S  K  A  S  Y  E  N  V  A  K  K  :  W  I  P  E  L  K  H  Y  A  P  G  V  P  I  V  L  V  G  T  K  L   : D  L  R  D  D  K  Q  F  F  V  D  H  P  G  A  V  P  I  T  T  A  Q  :  G  E  E  L  R  K  T  I  G  A  P  A  Y  I  E  C  S  S  K  T  Q  Q  :  N  V  K  A  V  F  D  A  A  I  K  V  V  L  Q  P  P  K  Q  K  K  K  K  G  K  S  Q  K  A  C  S  I  L  *  S  T  V  G  P  M  L  L  L  V  T  L  L  L  V  T  S  L  S  Y  S  F  V  I  C  L  G  G  S  R  R  S  M  L  Y  V  S  F  K  I  T  S  D  L  L  N  C  Q  V  A  R  F  S  V  *  W  L  *  S  L  I  V  *  S  H  S  T  F  V  V  G  H  S  I  V  P  S  L  F  *  F  A  L  Y  V  F  *  *  P  D  D  P  V  R  K  K  K  K  G  N  F  P  G  N  V  D  N  I  F  L  *  T  Y  *  T  F  L  F  R  Y  C  I  Q  I  Y  Y  Y  F  L  S  </first_frame>
            <second_frame>  I  I  S  R  L  K  Q  R  V  T  Y  N  T  D  S  E  W  K  K  I  Q  R  *  T  P  I  Y  F  H  P  F  S  L  Y  L  K  L  S  L  S  R  S  G  I  P  K  F  L  L  I  F  S  L  P  F  L  Y  S  H  F  H  S  P  Y  S  L  S  P  L  L  Q  F  S  L  N  F  P  F  R  R  I  R  V  R  V  S  P  R  E  P  K  K  T  P  L  A  C  L  D  F  L  L  C  W  V  F  K  P  F  *  R  N  D  I  E  R  N  W  R  G  *  K  K  R  K  Q  E  A  P  R  Y  H  I  *  S  L  F  F  F  L  N  F  F  W  D  Q  V  F  *  R  R  S  E  K  R  R  V  I  V  G  F  L  N  S  R  E  K  *  V  L  Q  G  L  S  N  V  L  P  S  A  M  V  P  L  E  R  R  V  S  *  F  L  T  P  A  I  P  S  P  R :   I  M  C  P  P  C  S  T  I  S  V  Q  M  W  S  S  M  G  A  L  S  T  *  G  C  G  I  L  L  :  D  R  R  I  T  I  G  *  D  L  *  V  T  V  E  L  M  F  S  F  W  H  S  L  S  L  V  K  P  A  M  K  T  L  P  R  S :   G  F  L  N  *  S  I  M  P  P  V  F  Q  *  C  L  L  E  Q  N  *  :  I  F  G  M  I  S  N  S  S  *  T  I  L  V  L  C  Q  L  P  L  L  R :   V  K  S  *  G  K  Q  L  V  H  L  L  T  L  N  V  V  Q  K  H  S  R :   T  *  K  Q  S  L  M  P  L  S  R  S  C  S  S  H  P  S  R  R  K  R  R  G  S  P  K  R  H  V  L  F  C  D  Q  Q  *  V  Q  C  Y  Y  W  S  H  F  S  L  *  P  L  S  R  I  P  L  S  F  V  S  E  E  V  G  G  P  C  C  M  S  H  L  K  L  L  V  I  S  *  I  V  R  W  L  G  F  L  C  N  G  C  D  L  *  L  F  S  H  T  A  P  L  S  *  A  T  L  L  C  P  L  C  S  D  L  L  Y  M  Y  F  N  D  L  M  I  Q  L  E  K  K  K  K  E  I  F  P  A  M  L  T  T  Y  F  S  E  H  I  K  R  F  F  L  D  I  A  F  K  Y  I  T  I  F  F  Q </second_frame>
            <third_frame>   L  F  P  G  *  N  K  G  L  L  I  I  L  T  Q  N  G  K  K  Y  R  D  E  H  P  F  I  F  I  L  S  L  S  T  S  N  F  L  F  L  D  L  G  S  L  N  F  S  S  F  S  L  Y  H  F  S  I  L  I  F  I  H  L  I  P  F  P  L  F  Y  N  S  L  *  T  F  P  F  V  E  L  G  L  G  F  H  Q  E  N  Q  R  K  H  H  W  H  V  S  I  F  F  S  A  G  F  S  S  H  S  E  E  T  T  L  K  G  I  G  E  V  K  R  N  G  N  K  K  L  Q  D  T  T  F  N  L  F  F  S  F  *  I  F  S  G  I  R  S  S  K  E  D  L  K  R  G  G  L  L  L  V  F  *  I  A  G  K  N  E  C  F  K  V  Y  Q  M  C  Y  R  R  R  W  C  R  W  K  D  V  S  L  D  F  L  H  Q  Q  Y  L  P  H   : G  L  C  A  H  R  V  R  Q  F  Q  C  K  C  G  R  Q  W  E  H  C  Q  P  R  V  V  G  Y  C  W :   T  G  G  L  Q  *  V  K  T  S  E  L  P  W  S  *  C  F  H  F  G  I  L  S  H  *  *  S  Q  L  *  K  R  C  Q  E   : V  D  S  *  I  E  A  L  C  P  R  C  S  N  S  A  C  W  N  K  T  R :   S  S  G  *  *  A  I  L  R  R  P  S  W  C  C  A  N  Y  H  C  S   : G  *  R  A  E  E  N  N  W  C  T  C  L  H  *  M  *  F  K  N  T  A   : E  R  E  S  S  L  *  C  R  Y  Q  G  R  A  P  A  T  Q  A  E  E  K  E  G  E  V  P  K  G  M  F  Y  F  V  I  N  S  R  S  N  V  I  T  G  H  T  S  P  C  N  L  S  L  V  F  L  C  H  L  S  R  R  K  *  E  V  H  V  V  C  L  I  *  N  Y  *  *  S  L  E  L  S  G  G  S  V  F  C  V  M  A  V  I  S  N  C  L  V  T  Q  H  L  C  R  R  P  L  Y  C  A  L  S  V  L  I  C  F  I  C  I  L  M  T  *  *  S  S  *  K  K  K  K  R  K  F  S  R  Q  C  *  Q  H  I  S  L  N  I  L  N  V  S  F  *  I  L  H  S  N  I  L  L  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46975" stop="46868"/>
                    <exon start="46104" stop="46017"/>
                    <exon start="45897" stop="45788"/>
                    <exon start="45706" stop="45643"/>
                    <exon start="44859" stop="44795"/>
                    <exon start="44691" stop="44626"/>
                    <exon start="44524" stop="44423"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKGKSQKACSIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47397" stop="47137"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPIYFHPFSLYLKLSLSRSGIPKFLLIFSLPFLYSHFHSPYSLSPLLQFSLNFPFRRIRVRVSPREPKKTPLACLDFLLCWVFKPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="54101" PGL_stop="49022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54101" e_stop="53730"/>
            <exon e_start="51738" e_stop="51588"/>
            <exon e_start="51498" e_stop="51331"/>
            <exon e_start="51191" e_stop="50965"/>
            <exon e_start="50510" e_stop="50387"/>
            <exon e_start="49973" e_stop="49911"/>
            <exon e_start="49750" e_stop="49607"/>
            <exon e_start="49524" e_stop="49056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54101" e_stop="53730" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53729" i_stop="51739" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51738" e_stop="51588" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51587" i_stop="51499" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51498" e_stop="51331" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51330" i_stop="51192" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51191" e_stop="50965" e_length="227"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="50964" i_stop="50511" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50510" e_stop="50387" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="50386" i_stop="49974" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49973" e_stop="49911" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49750" e_stop="49607" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.775" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49606" i_stop="49525" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49524" e_stop="49056" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54101" stop="53730"/>
              <exon start="51738" stop="51588"/>
              <exon start="51498" stop="51331"/>
              <exon start="51191" stop="51080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54098" stop="53868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54097" stop="53730"/>
              <exon start="51738" stop="51588"/>
              <exon start="51498" stop="51331"/>
              <exon start="51191" stop="50965"/>
              <exon start="50510" stop="50387"/>
              <exon start="49973" stop="49911"/>
              <exon start="49750" stop="49607"/>
              <exon start="49524" stop="49056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54083" stop="53730"/>
              <exon start="51738" stop="51656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53834" stop="53730"/>
              <exon start="51738" stop="51588"/>
              <exon start="51498" stop="51331"/>
              <exon start="51191" stop="51097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51649" stop="51588"/>
              <exon start="51498" stop="51331"/>
              <exon start="51191" stop="50965"/>
              <exon start="50510" stop="50486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51426" stop="51331"/>
              <exon start="51191" stop="50965"/>
              <exon start="50510" stop="50387"/>
              <exon start="49973" stop="49911"/>
              <exon start="49750" stop="49701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51426" stop="51331"/>
              <exon start="51191" stop="50965"/>
              <exon start="50510" stop="50387"/>
              <exon start="49973" stop="49951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51423" stop="51331"/>
              <exon start="51191" stop="51063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51371" stop="51331"/>
              <exon start="51191" stop="50965"/>
              <exon start="50510" stop="50387"/>
              <exon start="49973" stop="49911"/>
              <exon start="49750" stop="49691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51166" stop="50965"/>
              <exon start="50510" stop="50387"/>
              <exon start="49973" stop="49911"/>
              <exon start="49750" stop="49607"/>
              <exon start="49524" stop="49254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51166" stop="50965"/>
              <exon start="50510" stop="50387"/>
              <exon start="49973" stop="49911"/>
              <exon start="49750" stop="49607"/>
              <exon start="49524" stop="49256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51133" stop="50965"/>
              <exon start="50510" stop="50387"/>
              <exon start="49973" stop="49911"/>
              <exon start="49750" stop="49607"/>
              <exon start="49524" stop="49312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49356" stop="49056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAATCGTCGACGCCACAATTTTTCTCCTTCCCTCCGCCACACCAACTTTCATGGCGTCGTCTTTCTGCCCAAAACAGGCTTTATCTTTCACCAATTCGACCCACCAACTCCACCAATCCAGAGCAATTCCACGTGACATACACGTTCGTTTCCCTGCTCCCGTCTCTTCACCTTCTTCCAGGTGTGGGCTGAAGTCGAAAGCCACCACACGATTGAAGGTGTTGGCAACTTCTGCCACGAAGGTGATGGATCACTCGTCCAGTAAAGCGAGTTCACAGGCTCCTACAGTTGTTGAAGTGGATCTGGGTACTCGGAGCTACCCGATTTATATTGGGGCTGGACTTCTTGATCAACCTGACCTCCTACAAAG : ACATATTCATGGGAAGAGAGTCCTTGTCGTTACTAACACTACAGTTGCCCCTCTATATCTTGATAAAACTATAAGCGCTTTGACAGATGGAAACCCTAATGTTACCGTAGAAAGTGTCATTTTGCCAGATGGTGAGCAATTTAAAAACATG : GAAACTCTTATGAAAGTCTTTGATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGACATGTGTGGTTATGCCGCCGCTTCCTACCTTCGTGGAGTTAATTTTATTCAGATCCCCACCACTGTTATGGCACAG : GTAGATTCTTCTGTTGGAGGCAAAACTGGAATAAACCATCCACTTGGTAAAAATATGATTGGAGCATTCTACCAGCCACAATGTGTGCTTATAGACACGGATACCCTGAATACTTTACCAGATAGAGAATTAGCATCTGGCCTCGCAGAAGTAATAAAATATGGACTCATTAGAGATGCTGAGTTTTTCGAGTGGCAAGAACAGAATATGCCATTATTATTAGCAAG : GGACCCCACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCAGATGTTGTTTCTCAAGATGAGAAGGAAAGCGGAGTGAGGGCAACTTTGAACTTGGGTCATACCTTTGGTCAT : GCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG : GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT : GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTA</gDNA_template>
            <first_frame> T  N  R  R  R  H  N  F  S  P  S  L  R  H  T  N  F  H  G  V  V  F  L  P  K  T  G  F  I  F  H  Q  F  D  P  P  T  P  P  I  Q  S  N  S  T  *  H  T  R  S  F  P  C  S  R  L  F  T  F  F  Q  V  W  A  E  V  E  S  H  H  T  I  E  G  V  G  N  F  C  H  E  G  D  G  S  L  V  Q  *  S  E  F  T  G  S  Y  S  C  *  S  G  S  G  Y  S  E  L  P  D  L  Y  W  G  W  T  S  *  S  T  *  P  P  T  K  :  T  Y  S  W  E  E  S  P  C  R  Y  *  H  Y  S  C  P  S  I  S  *  *  N  Y  K  R  F  D  R  W  K  P  *  C  Y  R  R  K  C  H  F  A  R  W  *  A  I  *  K  H   : G  N  S  Y  E  S  L  *  *  S  H  R  I  K  A  G  S  S  L  Y  I  C  R  S  R  W  W  S  Y  R  *  H  V  W  L  C  R  R  F  L  P  S  W  S  *  F  Y  S  D  P  H  H  C  Y  G  T   : G  R  F  F  C  W  R  Q  N  W  N  K  P  S  T  W  *  K  Y  D  W  S  I  L  P  A  T  M  C  A  Y  R  H  G  Y  P  E  Y  F  T  R  *  R  I  S  I  W  P  R  R  S  N  K  I  W  T  H  *  R  C  *  V  F  R  V  A  R  T  E  Y  A  I  I  I  S  K  :  G  P  H  C  I  Y  L  C  Y  Q  A  F  L  *  K  Q  S  R  C  C  F  S  R  *  E  G  K  R  S  E  G  N  F  E  L  G  S  Y  L  W  S   : C  S  *  D  W  R  W  L  W  A  V  A  S  W  R  S  S  C  C  W  N   : G  H  G  C  *  H  V  T  P  S  W  L  D  *  *  L  T  G  T  A  G  A  E  D  L  T  T  G  K  A  A  D  F  T  S  *  N  Y  D  C  G  D  V  Q  V  Y  H  G   : C  *  *  K  S  G  R  W  E  T  K  T  Y  P  S  K  R  F  T  W  *  L  C  F  Y  R  *  L  *  P  E  G  P  R  *  N  T  P  C  I  F  Q  I  L  S  N  W  S  C  Y  I  E  A  I  V  R  Q  K  Y  K  F  Y  D  L  L  K  P  L  V  Q  F  *  K  G  W  S  R  L  *  A  A  L  L  A  L  G  G  M  L  M  P  S  V  K  Y  K  M  P  F  C  *  F  L  P  F  G  *  C  N  I  S  *  A  F  K  Y  L  Y  T  A  F  L  C  V  F  F  R  C  Q  I  F  F  I  L  V  A  *  Q  W  S  P  I  I  C  *  *  Y  S  *  W  M  S  C  L  F  N   </first_frame>
            <second_frame>  Q  I  V  D  A  T  I  F  L  L  P  S  A  T  P  T  F  M  A  S  S  F  C  P  K  Q  A  L  S  F  T  N  S  T  H  Q  L  H  Q  S  R  A  I  P  R  D  I  H  V  R  F  P  A  P  V  S  S  P  S  S  R  C  G  L  K  S  K  A  T  T  R  L  K  V  L  A  T  S  A  T  K  V  M  D  H  S  S  S  K  A  S  S  Q  A  P  T  V  V  E  V  D  L  G  T  R  S  Y  P  I  Y  I  G  A  G  L  L  D  Q  P  D  L  L  Q  R :   H  I  H  G  K  R  V  L  V  V  T  N  T  T  V  A  P  L  Y  L  D  K  T  I  S  A  L  T  D  G  N  P  N  V  T  V  E  S  V  I  L  P  D  G  E  Q  F  K  N  M  :  E  T  L  M  K  V  F  D  K  A  I  E  S  R  L  D  R  R  C  T  F  V  A  L  G  G  G  V  I  G  D  M  C  G  Y  A  A  A  S  Y  L  R  G  V  N  F  I  Q  I  P  T  T  V  M  A  Q  :  V  D  S  S  V  G  G  K  T  G  I  N  H  P  L  G  K  N  M  I  G  A  F  Y  Q  P  Q  C  V  L  I  D  T  D  T  L  N  T  L  P  D  R  E  L  A  S  G  L  A  E  V  I  K  Y  G  L  I  R  D  A  E  F  F  E  W  Q  E  Q  N  M  P  L  L  L  A  R :   D  P  T  A  F  T  Y  A  I  K  R  S  C  E  N  K  A  D  V  V  S  Q  D  E  K  E  S  G  V  R  A  T  L  N  L  G  H  T  F  G  H  :  A  V  E  T  G  V  G  Y  G  Q  W  L  H  G  E  A  V  A  A  G  T  :  V  M  A  V  D  M  S  R  R  L  G  W  I  D  D  S  L  V  Q  R  V  Q  K  I  L  Q  Q  A  K  L  P  T  S  P  P  E  T  M  T  V  E  M  F  K  S  I  M  A  :  V  D  K  K  V  A  D  G  K  L  R  L  I  L  L  K  G  S  L  G  N  C  V  F  T  G  D  Y  D  Q  K  A  L  D  E  T  L  R  A  F  S  K  S  *  A  I  G  V  V  T  *  K  Q  L  F  D  K  N  T  S  F  M  I  C  *  N  H  *  S  N  S  E  K  V  G  Q  G  C  R  Q  L  C  *  R  L  E  V  C  L  C  P  L  *  N  T  R  C  L  F  A  S  S  Y  P  L  V  S  V  I  F  L  E  L  S  N  I  C  I  Q  H  F  C  V  Y  F  S  A  V  K  S  S  L  Y  L  *  P  N  S  G  A  P  S  S  A  N  N  I  H  N  G  *  V  V  S  S  T  </second_frame>
            <third_frame>   K  S  S  T  P  Q  F  F  S  F  P  P  P  H  Q  L  S  W  R  R  L  S  A  Q  N  R  L  Y  L  S  P  I  R  P  T  N  S  T  N  P  E  Q  F  H  V  T  Y  T  F  V  S  L  L  P  S  L  H  L  L  P  G  V  G  *  S  R  K  P  P  H  D  *  R  C  W  Q  L  L  P  R  R  *  W  I  T  R  P  V  K  R  V  H  R  L  L  Q  L  L  K  W  I  W  V  L  G  A  T  R  F  I  L  G  L  D  F  L  I  N  L  T  S  Y  K   : D  I  F  M  G  R  E  S  L  S  L  L  T  L  Q  L  P  L  Y  I  L  I  K  L  *  A  L  *  Q  M  E  T  L  M  L  P  *  K  V  S  F  C  Q  M  V  S  N  L  K  T  W :   K  L  L  *  K  S  L  I  K  P  S  N  Q  G  W  I  V  V  V  H  L  S  L  S  V  V  E  L  *  V  T  C  V  V  M  P  P  L  P  T  F  V  E  L  I  L  F  R  S  P  P  L  L  W  H  R :   *  I  L  L  L  E  A  K  L  E  *  T  I  H  L  V  K  I  *  L  E  H  S  T  S  H  N  V  C  L  *  T  R  I  P  *  I  L  Y  Q  I  E  N  *  H  L  A  S  Q  K  *  *  N  M  D  S  L  E  M  L  S  F  S  S  G  K  N  R  I  C  H  Y  Y  *  Q   : G  T  P  L  H  L  P  M  L  S  S  V  P  V  K  T  K  Q  M  L  F  L  K  M  R  R  K  A  E  *  G  Q  L  *  T  W  V  I  P  L  V  M :   Q  L  R  L  A  L  A  M  G  S  G  F  M  E  K  Q  L  L  L  E  R :   S  W  L  L  T  C  H  A  V  L  V  G  L  M  T  H  W  Y  S  G  C  R  R  S  Y  N  R  Q  S  C  R  L  H  L  L  K  L  *  L  W  R  C  S  S  L  S  W  L :   L  I  K  K  W  Q  M  G  N  *  D  L  S  F  *  K  V  H  L  V  T  V  F  L  P  V  I  M  T  R  R  P  S  M  K  H  S  V  H  F  P  N  L  K  Q  L  E  L  L  H  R  S  N  C  S  T  K  I  Q  V  L  *  S  A  K  T  I  S  P  I  L  K  R  L  V  K  V  V  G  S  S  V  S  A  W  R  Y  A  Y  A  L  C  E  I  Q  D  A  F  L  L  V  L  T  L  W  L  V  *  Y  F  L  S  F  Q  I  F  V  Y  S  I  S  V  C  I  F  P  L  S  N  L  L  Y  T  C  S  L  T  V  E  P  H  H  L  L  I  I  F  I  M  D  E  L  S  L  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54100" stop="53730"/>
                    <exon start="51738" stop="51588"/>
                    <exon start="51498" stop="51331"/>
                    <exon start="51191" stop="50965"/>
                    <exon start="50510" stop="50387"/>
                    <exon start="49973" stop="49911"/>
                    <exon start="49750" stop="49607"/>
                    <exon start="49524" stop="49393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIVDATIFLLPSATPTFMASSFCPKQALSFTNSTHQLHQSRAIPRDIHVRFPAPVSSPSSRCGLKSKATTRLKVLATSATKVMDHSSSKASSQAPTVVEVDLGTRSYPIYIGAGLLDQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISALTDGNPNVTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVRATLNLGHTFGHAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49976" e_stop="49911"/>
            <exon e_start="49750" e_stop="49607"/>
            <exon e_start="49524" e_stop="49022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.775" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="49976" e_stop="49911" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49910" i_stop="49751" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49750" e_stop="49607" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.775" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49606" i_stop="49525" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="49524" e_stop="49022" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49976" stop="49911"/>
              <exon start="49750" stop="49607"/>
              <exon start="49524" stop="49022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49356" stop="49056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGCAGTTGAGACTGGCGTTGGCTATGGGCAGTGGCTTCATGGAGAAGCAGTTGCTGCTGGAACG : GTCATGGCTGTTGACATGTCACGCCGTCTTGGTTGGATTGATGACTCACTGGTACAGCGGGTGCAGAAGATCTTACAACAGGCAAAGCTGCCGACTTCACCTCCTGAAACTATGACTGTGGAGATGTTCAAGTCTATCATGGCT : GTTGATAAAAAAGTGGCAGATGGGAAACTAAGACTTATCCTTCTAAAAGGTTCACTTGGTAACTGTGTTTTTACCGGTGATTATGACCAGAAGGCCCTCGATGAAACACTCCGTGCATTTTCCAAATCTTAAGCAATTGGAGTTGTTACATAGAAGCAATTGTTCGACAAAAATACAAGTTTTATGATCTGCTAAAACCATTAGTCCAATTCTGAAAAGGTTGGTCAAGGTTGTAGGCAGCTCTGTTAGCGCTTGGAGGTATGCTTATGCCCTCTGTGAAATACAAGATGCCTTTTTGCTAGTTCTTACCCTTTGGTTAGTGTAATATTTCTTGAGCTTTCAAATATTTGTATACAGCATTTCTGTGTGTATTTTTCCGCTGTCAAATCTTCTTTATACTTGTAGCCTAACAGTGGAGCCCCATCATCTGCTAATAATATTCATAATGGATGAGTTGTCTCTTCAACTAATATACTTGCTGATGCATCTTCTATAACTGTTTA</gDNA_template>
            <first_frame> Q  A  V  E  T  G  V  G  Y  G  Q  W  L  H  G  E  A  V  A  A  G  T  :  V  M  A  V  D  M  S  R  R  L  G  W  I  D  D  S  L  V  Q  R  V  Q  K  I  L  Q  Q  A  K  L  P  T  S  P  P  E  T  M  T  V  E  M  F  K  S  I  M  A  :  V  D  K  K  V  A  D  G  K  L  R  L  I  L  L  K  G  S  L  G  N  C  V  F  T  G  D  Y  D  Q  K  A  L  D  E  T  L  R  A  F  S  K  S  *  A  I  G  V  V  T  *  K  Q  L  F  D  K  N  T  S  F  M  I  C  *  N  H  *  S  N  S  E  K  V  G  Q  G  C  R  Q  L  C  *  R  L  E  V  C  L  C  P  L  *  N  T  R  C  L  F  A  S  S  Y  P  L  V  S  V  I  F  L  E  L  S  N  I  C  I  Q  H  F  C  V  Y  F  S  A  V  K  S  S  L  Y  L  *  P  N  S  G  A  P  S  S  A  N  N  I  H  N  G  *  V  V  S  S  T  N  I  L  A  D  A  S  S  I  T  V   </first_frame>
            <second_frame>  R  Q  L  R  L  A  L  A  M  G  S  G  F  M  E  K  Q  L  L  L  E  R :   S  W  L  L  T  C  H  A  V  L  V  G  L  M  T  H  W  Y  S  G  C  R  R  S  Y  N  R  Q  S  C  R  L  H  L  L  K  L  *  L  W  R  C  S  S  L  S  W  L :   L  I  K  K  W  Q  M  G  N  *  D  L  S  F  *  K  V  H  L  V  T  V  F  L  P  V  I  M  T  R  R  P  S  M  K  H  S  V  H  F  P  N  L  K  Q  L  E  L  L  H  R  S  N  C  S  T  K  I  Q  V  L  *  S  A  K  T  I  S  P  I  L  K  R  L  V  K  V  V  G  S  S  V  S  A  W  R  Y  A  Y  A  L  C  E  I  Q  D  A  F  L  L  V  L  T  L  W  L  V  *  Y  F  L  S  F  Q  I  F  V  Y  S  I  S  V  C  I  F  P  L  S  N  L  L  Y  T  C  S  L  T  V  E  P  H  H  L  L  I  I  F  I  M  D  E  L  S  L  Q  L  I  Y  L  L  M  H  L  L  *  L  F  </second_frame>
            <third_frame>   G  S  *  D  W  R  W  L  W  A  V  A  S  W  R  S  S  C  C  W  N   : G  H  G  C  *  H  V  T  P  S  W  L  D  *  *  L  T  G  T  A  G  A  E  D  L  T  T  G  K  A  A  D  F  T  S  *  N  Y  D  C  G  D  V  Q  V  Y  H  G   : C  *  *  K  S  G  R  W  E  T  K  T  Y  P  S  K  R  F  T  W  *  L  C  F  Y  R  *  L  *  P  E  G  P  R  *  N  T  P  C  I  F  Q  I  L  S  N  W  S  C  Y  I  E  A  I  V  R  Q  K  Y  K  F  Y  D  L  L  K  P  L  V  Q  F  *  K  G  W  S  R  L  *  A  A  L  L  A  L  G  G  M  L  M  P  S  V  K  Y  K  M  P  F  C  *  F  L  P  F  G  *  C  N  I  S  *  A  F  K  Y  L  Y  T  A  F  L  C  V  F  F  R  C  Q  I  F  F  I  L  V  A  *  Q  W  S  P  I  I  C  *  *  Y  S  *  W  M  S  C  L  F  N  *  Y  T  C  *  C  I  F  Y  N  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49976" stop="49911"/>
                    <exon start="49750" stop="49607"/>
                    <exon start="49524" stop="49393"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49086" PGL_stop="49406"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49086" e_stop="49406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="49086" e_stop="49406" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49086" stop="49406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATTAGCAGATGATGGGGCTCCACTGTTAGGCTACAAGTATAAAGAAGATTTGACAGCGGAAAAATACACACAGAAATGCTGTATACAAATATTTGAAAGCTCAAGAAATATTACACTAACCAAAGGGTAAGAACTAGCAAAAAGGCATCTTGTATTTCACAGAGGGCATAAGCATACCTCCAAGCGCTAACAGAGCTGCCTACAACCTTGACCAACCTTTTCAGAATTGGACTAATGGTTTTAGCAGATCATAAAACTTGTATTTTTGTCGAACAATTGCTTCTATGTAACAACTCCAATTGCTTAAGATTTGGAAA</gDNA_template>
            <first_frame> Y  Y  *  Q  M  M  G  L  H  C  *  A  T  S  I  K  K  I  *  Q  R  K  N  T  H  R  N  A  V  Y  K  Y  L  K  A  Q  E  I  L  H  *  P  K  G  K  N  *  Q  K  G  I  L  Y  F  T  E  G  I  S  I  P  P  S  A  N  R  A  A  Y  N  L  D  Q  P  F  Q  N  W  T  N  G  F  S  R  S  *  N  L  Y  F  C  R  T  I  A  S  M  *  Q  L  Q  L  L  K  I  W  K </first_frame>
            <second_frame>  I  I  S  R  *  W  G  S  T  V  R  L  Q  V  *  R  R  F  D  S  G  K  I  H  T  E  M  L  Y  T  N  I  *  K  L  K  K  Y  Y  T  N  Q  R  V  R  T  S  K  K  A  S  C  I  S  Q  R  A  *  A  Y  L  Q  A  L  T  E  L  P  T  T  L  T  N  L  F  R  I  G  L  M  V  L  A  D  H  K  T  C  I  F  V  E  Q  L  L  L  C  N  N  S  N  C  L  R  F  G   </second_frame>
            <third_frame>   L  L  A  D  D  G  A  P  L  L  G  Y  K  Y  K  E  D  L  T  A  E  K  Y  T  Q  K  C  C  I  Q  I  F  E  S  S  R  N  I  T  L  T  K  G  *  E  L  A  K  R  H  L  V  F  H  R  G  H  K  H  T  S  K  R  *  Q  S  C  L  Q  P  *  P  T  F  S  E  L  D  *  W  F  *  Q  I  I  K  L  V  F  L  S  N  N  C  F  Y  V  T  T  P  I  A  *  D  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N19.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74256" PGL_stop="76852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74256" e_stop="74384"/>
            <exon e_start="74462" e_stop="74586"/>
            <exon e_start="75286" e_stop="75335"/>
            <exon e_start="75488" e_stop="75553"/>
            <exon e_start="75652" e_stop="75700"/>
            <exon e_start="76490" e_stop="76572"/>
            <exon e_start="76672" e_stop="76751"/>
            <exon e_start="76848" e_stop="76852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.861" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74256" e_stop="74384" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74385" i_stop="74461" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74462" e_stop="74586" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.861">
            <gDNA_intron_boundary i_start="74587" i_stop="75285" i_length="699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75286" e_stop="75335" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75336" i_stop="75487" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75488" e_stop="75553" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.915">
            <gDNA_intron_boundary i_start="75554" i_stop="75651" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75652" e_stop="75700" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="75701" i_stop="76489" i_length="789"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76490" e_stop="76572" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76573" i_stop="76671" i_length="99"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76672" e_stop="76751" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.899" acc_prob="0.926">
            <gDNA_intron_boundary i_start="76752" i_stop="76847" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76848" e_stop="76852" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74256" stop="74384"/>
              <exon start="74462" stop="74586"/>
              <exon start="75286" stop="75335"/>
              <exon start="75488" stop="75553"/>
              <exon start="75652" stop="75697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74327" stop="74384"/>
              <exon start="74462" stop="74586"/>
              <exon start="75286" stop="75335"/>
              <exon start="75488" stop="75553"/>
              <exon start="75652" stop="75700"/>
              <exon start="76490" stop="76572"/>
              <exon start="76672" stop="76751"/>
              <exon start="76848" stop="76852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAATTATATTATCAATGGCAGCACCAAAAGTAGATGCAGAGTATCTGAAGGAAATAGAAAAGGCACGAAGAGATCTCCGAGCTCTCATCTCCAGCAAAAACTGTGCTCCTATTATGCTTCGTTTAGC : GTGGCATGATGCAGGAACCTATGATGCTACAACTAAGACTGGAGGACCTGATGGATCAATCAGGAATGAGGTAGAGTACAAGCATGGCGCTAACAGCGGCCTCAAAATCGCAATTGATCTTTGCG : AAGAAATTAAGGCCAGACATCCTAAAATTACGTATGCTGACCTCTATCAG : CTTGCTGGAGTTGTTGCTGTTGAGGTAACTGGAGGTCCAACCATTGATTTTGTCCCTGGTAGAAAG : GATTCATTAAGTTCACCAGAAGAGGGACGCCTTCCTGATGCTAAACAAG : GTCCACCGCACCTGAGGGATGTTTTTTACAGAATGGGACTCTCTGATAAAGATATAGTAGCATTGTCTGGAGGACACACACTG : GGAAGAGCACACCCAGAGAGATCTGGCTTTGAGGGCCCTTGGACTAAAGAGCCTTTGAAATTTGACAACTCATACTTTGT : GGAGC</gDNA_template>
            <first_frame> S  N  Y  I  I  N  G  S  T  K  S  R  C  R  V  S  E  G  N  R  K  G  T  K  R  S  P  S  S  H  L  Q  Q  K  L  C  S  Y  Y  A  S  F  S  :  V  A  *  C  R  N  L  *  C  Y  N  *  D  W  R  T  *  W  I  N  Q  E  *  G  R  V  Q  A  W  R  *  Q  R  P  Q  N  R  N  *  S  L  R :   R  N  *  G  Q  T  S  *  N  Y  V  C  *  P  L  S   : A  C  W  S  C  C  C  *  G  N  W  R  S  N  H  *  F  C  P  W  *  K   : G  F  I  K  F  T  R  R  G  T  P  S  *  C  *  T  R :   S  T  A  P  E  G  C  F  L  Q  N  G  T  L  *  *  R  Y  S  S  I  V  W  R  T  H  T   : G  K  S  T  P  R  E  I  W  L  *  G  P  L  D  *  R  A  F  E  I  *  Q  L  I  L  C  :  G   </first_frame>
            <second_frame>  R  I  I  L  S  M  A  A  P  K  V  D  A  E  Y  L  K  E  I  E  K  A  R  R  D  L  R  A  L  I  S  S  K  N  C  A  P  I  M  L  R  L  A :   W  H  D  A  G  T  Y  D  A  T  T  K  T  G  G  P  D  G  S  I  R  N  E  V  E  Y  K  H  G  A  N  S  G  L  K  I  A  I  D  L  C   : E  E  I  K  A  R  H  P  K  I  T  Y  A  D  L  Y  Q  :  L  A  G  V  V  A  V  E  V  T  G  G  P  T  I  D  F  V  P  G  R  K  :  D  S  L  S  S  P  E  E  G  R  L  P  D  A  K  Q   : G  P  P  H  L  R  D  V  F  Y  R  M  G  L  S  D  K  D  I  V  A  L  S  G  G  H  T  L  :  G  R  A  H  P  E  R  S  G  F  E  G  P  W  T  K  E  P  L  K  F  D  N  S  Y  F  V :   E  </second_frame>
            <third_frame>   E  L  Y  Y  Q  W  Q  H  Q  K  *  M  Q  S  I  *  R  K  *  K  R  H  E  E  I  S  E  L  S  S  P  A  K  T  V  L  L  L  C  F  V  *   : R  G  M  M  Q  E  P  M  M  L  Q  L  R  L  E  D  L  M  D  Q  S  G  M  R  *  S  T  S  M  A  L  T  A  A  S  K  S  Q  L  I  F  A  :  K  K  L  R  P  D  I  L  K  L  R  M  L  T  S  I  S :   L  L  E  L  L  L  L  R  *  L  E  V  Q  P  L  I  L  S  L  V  E  R :   I  H  *  V  H  Q  K  R  D  A  F  L  M  L  N  K  :  V  H  R  T  *  G  M  F  F  T  E  W  D  S  L  I  K  I  *  *  H  C  L  E  D  T  H  W :   E  E  H  T  Q  R  D  L  A  L  R  A  L  G  L  K  S  L  *  N  L  T  T  H  T  L   : W  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74257" stop="74384"/>
                    <exon start="74462" stop="74586"/>
                    <exon start="75286" stop="75335"/>
                    <exon start="75488" stop="75553"/>
                    <exon start="75652" stop="75700"/>
                    <exon start="76490" stop="76572"/>
                    <exon start="76672" stop="76751"/>
                    <exon start="76848" stop="76851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIILSMAAPKVDAEYLKEIEKARRDLRALISSKNCAPIMLRLAWHDAGTYDATTKTGGPDGSIRNEVEYKHGANSGLKIAIDLCEEIKARHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSLSSPEEGRLPDAKQGPPHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFEGPWTKEPLKFDNSYFVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="79657" PGL_stop="81958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79657" e_stop="79943"/>
            <exon e_start="80075" e_stop="80124"/>
            <exon e_start="80239" e_stop="80304"/>
            <exon e_start="80836" e_stop="80884"/>
            <exon e_start="80985" e_stop="81070"/>
            <exon e_start="81171" e_stop="81223"/>
            <exon e_start="81316" e_stop="81409"/>
            <exon e_start="81555" e_stop="81958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79657" e_stop="79943" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.922">
            <gDNA_intron_boundary i_start="79944" i_stop="80074" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80075" e_stop="80124" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="80125" i_stop="80238" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80239" e_stop="80304" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.953">
            <gDNA_intron_boundary i_start="80305" i_stop="80835" i_length="531"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80836" e_stop="80884" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80885" i_stop="80984" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80985" e_stop="81070" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.913" acc_prob="0.979">
            <gDNA_intron_boundary i_start="81071" i_stop="81170" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81171" e_stop="81223" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="81224" i_stop="81315" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81316" e_stop="81409" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.931">
            <gDNA_intron_boundary i_start="81410" i_stop="81554" i_length="145"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="81555" e_stop="81958" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79657" stop="79943"/>
              <exon start="80075" stop="80124"/>
              <exon start="80239" stop="80304"/>
              <exon start="80836" stop="80884"/>
              <exon start="80985" stop="81069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79661" stop="79943"/>
              <exon start="80075" stop="80124"/>
              <exon start="80239" stop="80304"/>
              <exon start="80836" stop="80884"/>
              <exon start="80985" stop="81070"/>
              <exon start="81171" stop="81223"/>
              <exon start="81316" stop="81409"/>
              <exon start="81555" stop="81623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80877" stop="80884"/>
              <exon start="80985" stop="81070"/>
              <exon start="81171" stop="81223"/>
              <exon start="81316" stop="81409"/>
              <exon start="81555" stop="81945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80877" stop="80884"/>
              <exon start="80985" stop="81070"/>
              <exon start="81171" stop="81223"/>
              <exon start="81316" stop="81409"/>
              <exon start="81555" stop="81945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80877" stop="80884"/>
              <exon start="80985" stop="81070"/>
              <exon start="81171" stop="81223"/>
              <exon start="81316" stop="81409"/>
              <exon start="81555" stop="81945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80877" stop="80884"/>
              <exon start="80985" stop="81070"/>
              <exon start="81171" stop="81223"/>
              <exon start="81316" stop="81409"/>
              <exon start="81555" stop="81945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81598" stop="81958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAGGCGAAGATCATTTGGCATAATATATAGTTTCAGCGTACCATTCATGGCGCCACAAGTAGATGAGAAATATCGTGAAGAGATAAACAAAGCACGAATAGAACTTGGAAATCTTGTAAAATCGAAGGAGTTCAGTGCTCCTGATTTCCTTCGTTTAGCGTACGCATCCCAATTCACAATTGCCAATTCTCATCATAACGATGATGCAGCAAATGCTACTTCTACTCATGATGCCACAAAAAAGAAAACTCAATCTGCCAATAATAATTCTCTCAACACAATTG : ATAAAATCAAGGCCAATCATCCCATAATAACGTATCCTGACCTCTATCAG : CTTGCTGGGATTGTTGCTGTTAAAGAACTTGGTGGTATAGACATCGAGTTTGTCCCTGGTAGAACG : GAATCATTAATTTTACCAGATGAAAACTGCCTTCCTGATGTCAAACAAA : GTCCAGAAGAACTAAGAAATGTCTTCCGAAAAGTGAAAATCTCTGATCCCAAGCATATAGTAGCATTATATGGAGGTCTCAAACTG : GCCACAGCTGGAGCTCAGGCTACAAATTTGAAATTGGACAACTCATACTTTGT : GGACCTCCTCGACAAGAAGAAGAATTTAAGTCCCGCGGAAAAAGCTCTGCTTGATGATCCGGAATTTCACCACTGCGTGCAATGTTATGCAACG : CATAAAGAGGATTTCTTTGAGGACTATGAAGAGGCACACAAGAAGCTCGCTGATCTTGGCTTACCATATTCAGCATTTATCAAATCAACATTAGAAAAAAGTGCATCACAAGTGAAGAAGGTGCTGGCGGCACAAAAGGCTGTTGGAGTTGGAGTTGCTGTTGCAGCCGCGGTTGTAATATTGAGTTTCTTCTATGTAATCAACAGGAGGACTGCTAAGCATTCGTCATATCAGTACCAGTAACATTGGTGGTGAACTCAATTGAAAGAAAAGATATGAACAGTTGGACTCCATGGTTCAGCTATAATAAATCTTGGATATCTCCTATTAACCTCAGTTGTAAACATTCATCAAAATTCAATAAAAAAACTTGAATTCCTTTTGAGCAAGAATTGTTCACAAAT</gDNA_template>
            <first_frame> Q  K  A  K  I  I  W  H  N  I  *  F  Q  R  T  I  H  G  A  T  S  R  *  E  I  S  *  R  D  K  Q  S  T  N  R  T  W  K  S  C  K  I  E  G  V  Q  C  S  *  F  P  S  F  S  V  R  I  P  I  H  N  C  Q  F  S  S  *  R  *  C  S  K  C  Y  F  Y  S  *  C  H  K  K  E  N  S  I  C  Q  *  *  F  S  Q  H  N  * :   *  N  Q  G  Q  S  S  H  N  N  V  S  *  P  L  S   : A  C  W  D  C  C  C  *  R  T  W  W  Y  R  H  R  V  C  P  W  *  N   : G  I  I  N  F  T  R  *  K  L  P  S  *  C  Q  T  K :   S  R  R  T  K  K  C  L  P  K  S  E  N  L  *  S  Q  A  Y  S  S  I  I  W  R  S  Q  T   : G  H  S  W  S  S  G  Y  K  F  E  I  G  Q  L  I  L  C  :  G  P  P  R  Q  E  E  E  F  K  S  R  G  K  S  S  A  *  *  S  G  I  S  P  L  R  A  M  L  C  N   : A  *  R  G  F  L  *  G  L  *  R  G  T  Q  E  A  R  *  S  W  L  T  I  F  S  I  Y  Q  I  N  I  R  K  K  C  I  T  S  E  E  G  A  G  G  T  K  G  C  W  S  W  S  C  C  C  S  R  G  C  N  I  E  F  L  L  C  N  Q  Q  E  D  C  *  A  F  V  I  S  V  P  V  T  L  V  V  N  S  I  E  R  K  D  M  N  S  W  T  P  W  F  S  Y  N  K  S  W  I  S  P  I  N  L  S  C  K  H  S  S  K  F  N  K  K  T  *  I  P  F  E  Q  E  L  F  T  N </first_frame>
            <second_frame>  K  R  R  R  S  F  G  I  I  Y  S  F  S  V  P  F  M  A  P  Q  V  D  E  K  Y  R  E  E  I  N  K  A  R  I  E  L  G  N  L  V  K  S  K  E  F  S  A  P  D  F  L  R  L  A  Y  A  S  Q  F  T  I  A  N  S  H  H  N  D  D  A  A  N  A  T  S  T  H  D  A  T  K  K  K  T  Q  S  A  N  N  N  S  L  N  T  I   : D  K  I  K  A  N  H  P  I  I  T  Y  P  D  L  Y  Q  :  L  A  G  I  V  A  V  K  E  L  G  G  I  D  I  E  F  V  P  G  R  T  :  E  S  L  I  L  P  D  E  N  C  L  P  D  V  K  Q   : S  P  E  E  L  R  N  V  F  R  K  V  K  I  S  D  P  K  H  I  V  A  L  Y  G  G  L  K  L  :  A  T  A  G  A  Q  A  T  N  L  K  L  D  N  S  Y  F  V :   D  L  L  D  K  K  K  N  L  S  P  A  E  K  A  L  L  D  D  P  E  F  H  H  C  V  Q  C  Y  A  T  :  H  K  E  D  F  F  E  D  Y  E  E  A  H  K  K  L  A  D  L  G  L  P  Y  S  A  F  I  K  S  T  L  E  K  S  A  S  Q  V  K  K  V  L  A  A  Q  K  A  V  G  V  G  V  A  V  A  A  A  V  V  I  L  S  F  F  Y  V  I  N  R  R  T  A  K  H  S  S  Y  Q  Y  Q  *  H  W  W  *  T  Q  L  K  E  K  I  *  T  V  G  L  H  G  S  A  I  I  N  L  G  Y  L  L  L  T  S  V  V  N  I  H  Q  N  S  I  K  K  L  E  F  L  L  S  K  N  C  S  Q   </second_frame>
            <third_frame>   K  G  E  D  H  L  A  *  Y  I  V  S  A  Y  H  S  W  R  H  K  *  M  R  N  I  V  K  R  *  T  K  H  E  *  N  L  E  I  L  *  N  R  R  S  S  V  L  L  I  S  F  V  *  R  T  H  P  N  S  Q  L  P  I  L  I  I  T  M  M  Q  Q  M  L  L  L  L  M  M  P  Q  K  R  K  L  N  L  P  I  I  I  L  S  T  Q  L  :  I  K  S  R  P  I  I  P  *  *  R  I  L  T  S  I  S :   L  L  G  L  L  L  L  K  N  L  V  V  *  T  S  S  L  S  L  V  E  R :   N  H  *  F  Y  Q  M  K  T  A  F  L  M  S  N  K  :  V  Q  K  N  *  E  M  S  S  E  K  *  K  S  L  I  P  S  I  *  *  H  Y  M  E  V  S  N  W :   P  Q  L  E  L  R  L  Q  I  *  N  W  T  T  H  T  L   : W  T  S  S  T  R  R  R  I  *  V  P  R  K  K  L  C  L  M  I  R  N  F  T  T  A  C  N  V  M  Q  R :   I  K  R  I  S  L  R  T  M  K  R  H  T  R  S  S  L  I  L  A  Y  H  I  Q  H  L  S  N  Q  H  *  K  K  V  H  H  K  *  R  R  C  W  R  H  K  R  L  L  E  L  E  L  L  L  Q  P  R  L  *  Y  *  V  S  S  M  *  S  T  G  G  L  L  S  I  R  H  I  S  T  S  N  I  G  G  E  L  N  *  K  K  R  Y  E  Q  L  D  S  M  V  Q  L  *  *  I  L  D  I  S  Y  *  P  Q  L  *  T  F  I  K  I  Q  *  K  N  L  N  S  F  *  A  R  I  V  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79658" stop="79943"/>
                    <exon start="80075" stop="80124"/>
                    <exon start="80239" stop="80304"/>
                    <exon start="80836" stop="80884"/>
                    <exon start="80985" stop="81070"/>
                    <exon start="81171" stop="81223"/>
                    <exon start="81316" stop="81409"/>
                    <exon start="81555" stop="81797"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRRSFGIIYSFSVPFMAPQVDEKYREEINKARIELGNLVKSKEFSAPDFLRLAYASQFTIANSHHNDDAANATSTHDATKKKTQSANNNSLNTIDKIKANHPIITYPDLYQLAGIVAVKELGGIDIEFVPGRTESLILPDENCLPDVKQSPEELRNVFRKVKISDPKHIVALYGGLKLATAGAQATNLKLDNSYFVDLLDKKKNLSPAEKALLDDPEFHHCVQCYATHKEDFFEDYEEAHKKLADLGLPYSAFIKSTLEKSASQVKKVLAAQKAVGVGVAVAAAVVILSFFYVINRRTAKHSSYQYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="89040" PGL_stop="84618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89035" e_stop="89001"/>
            <exon e_start="87300" e_stop="87187"/>
            <exon e_start="86086" e_stop="85675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89035" e_stop="89001" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="89000" i_stop="87301" i_length="1700"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87300" e_stop="87187" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86086" e_stop="85675" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89035" stop="89001"/>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89033" stop="89001"/>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89029" stop="89001"/>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87287" stop="87187"/>
              <exon start="86086" stop="85734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACCCATTTCAGCCATGAAGGACGATTACGAG : ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG : GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATTGCAAGTCAGCAGGAACAATATCCTTTCGTCCTTTCAAACAAAAATGGAGAACTGTCATT</gDNA_template>
            <first_frame> R  N  P  F  Q  P  *  R  T  I  T  R :   S  K  K  R  S  K  L  L  Q  M  F  C  F  N  I  Q  I  L  L  W  P  V  L  V  I  K  F  G  L  V  T  *  D  C  I  *  *  R :   K  F  Q  D  C  L  L  L  *  S  A  N  T  I  Q  H  L  L  L  M  *  W  E  S  P  Q  A  Q  V  S  Q  D  W  T  K  Q  T  V  S  E  V  L  R  F  V  K  C  I  V  R  Y  V  S  S  L  L  S  G  K  I  Y  Y  Q  L  L  Y  C  L  R  H  V  G  S  C  S  F  C  Q  G  L  R  L  C  N  L  C  R  I  Y  V  F  *  D  N  Y  F  F  H  H  D  M  S  T  H  I  L  V  L  L  D  H  Y  Y  S  T  S  N  C  K  S  A  G  T  I  S  F  R  P  F  K  Q  K  W  R  T  V  I </first_frame>
            <second_frame>  E  T  H  F  S  H  E  G  R  L  R   : D  R  R  K  E  A  S  C  C  R  C  F  V  S  I  F  K  F  C  Y  G  L  Y  W  *  S  S  S  A  L  *  L  E  T  A  F  D  E   : G  S  F  R  T  A  Y  F  F  E  A  R  T  P  S  N  I  F  S  *  C  N  G  R  V  L  K  L  R  Y  L  K  T  G  Q  S  R  Q  F  P  R  S  L  D  L  *  S  A  L  F  A  M  F  L  V  C  C  L  E  K  Y  T  I  S  C  C  T  A  *  G  M  *  D  L  V  H  F  V  R  V  F  G  Y  A  I  S  V  A  F  M  F  F  K  T  I  I  S  F  I  M  T  *  A  H  T  F  *  F  F  L  I  T  I  T  Q  L  P  I  A  S  Q  Q  E  Q  Y  P  F  V  L  S  N  K  N  G  E  L  S   </second_frame>
            <third_frame>   K  P  I  S  A  M  K  D  D  Y  E  :  I  E  E  K  K  Q  A  A  A  D  V  L  F  Q  Y  S  N  F  V  M  A  C  I  G  N  Q  V  R  P  C  D  L  R  L  H  L  M  K  :  E  V  S  G  L  P  T  S  L  K  R  E  H  H  P  T  S  S  P  D  V  M  G  E  S  S  S  S  G  I  S  R  L  D  K  A  D  S  F  R  G  P  *  I  C  E  V  H  C  S  L  C  F  *  F  A  V  W  K  N  I  L  S  V  A  V  L  L  E  A  C  R  I  L  F  I  L  S  G  S  S  V  M  Q  S  L  S  H  L  C  F  L  R  Q  L  F  L  S  S  *  H  E  H  T  H  F  S  S  S  *  S  L  L  L  N  F  Q  L  Q  V  S  R  N  N  I  L  S  S  F  Q  T  K  M  E  N  C  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89033" stop="89001"/>
                    <exon start="87300" stop="87187"/>
                    <exon start="86086" stop="85958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPISAMKDDYEIEEKKQAAADVLFQYSNFVMACIGNQVRPCDLRLHLMKEVSGLPTSLKREHHPTSSPDVMGESSSSGISRLDKADSFRGP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86022" stop="85810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WESPQAQVSQDWTKQTVSEVLRFVKCIVRYVSSLLSGKIYYQLLYCLRHVGSCSFCQGLRLCNLCRIYVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87303" e_stop="87187"/>
            <exon e_start="86086" e_stop="85734"/>
            <exon e_start="85617" e_stop="85613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.839" e_score="0.980"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87303" e_stop="87187" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="86086" e_stop="85734" e_length="353"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.839">
            <gDNA_intron_boundary i_start="85733" i_stop="85618" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="0.400">
            <gDNA_exon_boundary e_start="85617" e_stop="85613" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87303" stop="87187"/>
              <exon start="86086" stop="85734"/>
              <exon start="85617" stop="85613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87303" stop="87187"/>
              <exon start="86086" stop="85734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87287" stop="87187"/>
              <exon start="86086" stop="85734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG : GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCATGACATGAGCACACACATTTTAGTTCTTCTTGATCACTATTACTCAACTTCCAATT : TGAAT</gDNA_template>
            <first_frame> Q  I  E  E  K  K  Q  A  A  A  D  V  L  F  Q  Y  S  N  F  V  M  A  C  I  G  N  Q  V  R  P  C  D  L  R  L  H  L  M  K  :  E  V  S  G  L  P  T  S  L  K  R  E  H  H  P  T  S  S  P  D  V  M  G  E  S  S  S  S  G  I  S  R  L  D  K  A  D  S  F  R  G  P  *  I  C  E  V  H  C  S  L  C  F  *  F  A  V  W  K  N  I  L  S  V  A  V  L  L  E  A  C  R  I  L  F  I  L  S  G  S  S  V  M  Q  S  L  S  H  L  C  F  L  R  Q  L  F  L  S  S  *  H  E  H  T  H  F  S  S  S  *  S  L  L  L  N  F  Q  F :   E  </first_frame>
            <second_frame>  R  S  K  K  R  S  K  L  L  Q  M  F  C  F  N  I  Q  I  L  L  W  P  V  L  V  I  K  F  G  L  V  T  *  D  C  I  *  *  R :   K  F  Q  D  C  L  L  L  *  S  A  N  T  I  Q  H  L  L  L  M  *  W  E  S  P  Q  A  Q  V  S  Q  D  W  T  K  Q  T  V  S  E  V  L  R  F  V  K  C  I  V  R  Y  V  S  S  L  L  S  G  K  I  Y  Y  Q  L  L  Y  C  L  R  H  V  G  S  C  S  F  C  Q  G  L  R  L  C  N  L  C  R  I  Y  V  F  *  D  N  Y  F  F  H  H  D  M  S  T  H  I  L  V  L  L  D  H  Y  Y  S  T  S  N   : L  N </second_frame>
            <third_frame>   D  R  R  K  E  A  S  C  C  R  C  F  V  S  I  F  K  F  C  Y  G  L  Y  W  *  S  S  S  A  L  *  L  E  T  A  F  D  E   : G  S  F  R  T  A  Y  F  F  E  A  R  T  P  S  N  I  F  S  *  C  N  G  R  V  L  K  L  R  Y  L  K  T  G  Q  S  R  Q  F  P  R  S  L  D  L  *  S  A  L  F  A  M  F  L  V  C  C  L  E  K  Y  T  I  S  C  C  T  A  *  G  M  *  D  L  V  H  F  V  R  V  F  G  Y  A  I  S  V  A  F  M  F  F  K  T  I  I  S  F  I  M  T  *  A  H  T  F  *  F  F  L  I  T  I  T  Q  L  P  I  :  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87303" stop="87187"/>
                    <exon start="86086" stop="85958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIEEKKQAAADVLFQYSNFVMACIGNQVRPCDLRLHLMKEVSGLPTSLKREHHPTSSPDVMGESSSSGISRLDKADSFRGP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86022" stop="85810"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WESPQAQVSQDWTKQTVSEVLRFVKCIVRYVSSLLSGKIYYQLLYCLRHVGSCSFCQGLRLCNLCRIYVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="89040" e_stop="89001"/>
            <exon e_start="87300" e_stop="87187"/>
            <exon e_start="86086" e_stop="85790"/>
            <exon e_start="84660" e_stop="84618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.698"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89040" e_stop="89001" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="89000" i_stop="87301" i_length="1700"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87300" e_stop="87187" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87186" i_stop="86087" i_length="1100"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="86086" e_stop="85790" e_length="297"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85789" i_stop="84661" i_length="1129"/>
          </intron>
          <exon e_serial="4" e_score="0.698">
            <gDNA_exon_boundary e_start="84660" e_stop="84618" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89040" stop="89001"/>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85790"/>
              <exon start="84660" stop="84618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87300" stop="87187"/>
              <exon start="86086" stop="85875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGAGAAACCCATTTCAGCCATGAAGGACGATTACGAG : ATCGAAGAAAAGAAGCAAGCTGCTGCAGATGTTTTGTTTCAATATTCAAATTTTGTTATGGCCTGTATTGGTAATCAAGTTCGGCCTTGTGACTTGAGACTGCATTTGATGAAG : GAAGTTTCAGGACTGCCTACTTCTTTGAAGCGCGAACACCATCCAACATCTTCTCCTGATGTAATGGGAGAGTCCTCAAGCTCAGGTATCTCAAGACTGGACAAAGCAGACAGTTTCCGAGGTCCTTAGATTTGTGAAGTGCATTGTTCGCTATGTTTCTAGTTTGCTGTCTGGAAAAATATACTATCAGTTGCTGTACTGCTTGAGGCATGTAGGATCTTGTTCATTTTGTCAGGGTCTTCGGTTATGCAATCTCTGTCGCATTTATGTTTTTTAAGACAATTATTTCTTTCATCA : ACAAAAATAATATATACCTATAAAAGAAAAAATCAAAAACAAA</gDNA_template>
            <first_frame> G  G  E  T  H  F  S  H  E  G  R  L  R   : D  R  R  K  E  A  S  C  C  R  C  F  V  S  I  F  K  F  C  Y  G  L  Y  W  *  S  S  S  A  L  *  L  E  T  A  F  D  E   : G  S  F  R  T  A  Y  F  F  E  A  R  T  P  S  N  I  F  S  *  C  N  G  R  V  L  K  L  R  Y  L  K  T  G  Q  S  R  Q  F  P  R  S  L  D  L  *  S  A  L  F  A  M  F  L  V  C  C  L  E  K  Y  T  I  S  C  C  T  A  *  G  M  *  D  L  V  H  F  V  R  V  F  G  Y  A  I  S  V  A  F  M  F  F  K  T  I  I  S  F  I   : N  K  N  N  I  Y  L  *  K  K  K  S  K  T   </first_frame>
            <second_frame>  E  E  K  P  I  S  A  M  K  D  D  Y  E  :  I  E  E  K  K  Q  A  A  A  D  V  L  F  Q  Y  S  N  F  V  M  A  C  I  G  N  Q  V  R  P  C  D  L  R  L  H  L  M  K  :  E  V  S  G  L  P  T  S  L  K  R  E  H  H  P  T  S  S  P  D  V  M  G  E  S  S  S  S  G  I  S  R  L  D  K  A  D  S  F  R  G  P  *  I  C  E  V  H  C  S  L  C  F  *  F  A  V  W  K  N  I  L  S  V  A  V  L  L  E  A  C  R  I  L  F  I  L  S  G  S  S  V  M  Q  S  L  S  H  L  C  F  L  R  Q  L  F  L  S  S  :  T  K  I  I  Y  T  Y  K  R  K  N  Q  K  Q  </second_frame>
            <third_frame>   R  R  N  P  F  Q  P  *  R  T  I  T  R :   S  K  K  R  S  K  L  L  Q  M  F  C  F  N  I  Q  I  L  L  W  P  V  L  V  I  K  F  G  L  V  T  *  D  C  I  *  *  R :   K  F  Q  D  C  L  L  L  *  S  A  N  T  I  Q  H  L  L  L  M  *  W  E  S  P  Q  A  Q  V  S  Q  D  W  T  K  Q  T  V  S  E  V  L  R  F  V  K  C  I  V  R  Y  V  S  S  L  L  S  G  K  I  Y  Y  Q  L  L  Y  C  L  R  H  V  G  S  C  S  F  C  Q  G  L  R  L  C  N  L  C  R  I  Y  V  F  *  D  N  Y  F  F  H  Q :   Q  K  *  Y  I  P  I  K  E  K  I  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89039" stop="89001"/>
                    <exon start="87300" stop="87187"/>
                    <exon start="86086" stop="85958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKPISAMKDDYEIEEKKQAAADVLFQYSNFVMACIGNQVRPCDLRLHLMKEVSGLPTSLKREHHPTSSPDVMGESSSSGISRLDKADSFRGP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86022" stop="85810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WESPQAQVSQDWTKQTVSEVLRFVKCIVRYVSSLLSGKIYYQLLYCLRHVGSCSFCQGLRLCNLCRIYVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="93598" PGL_stop="91612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93598" e_stop="93577"/>
            <exon e_start="93508" e_stop="93124"/>
            <exon e_start="91647" e_stop="91612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93598" e_stop="93577" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="93576" i_stop="93509" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93508" e_stop="93124" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93123" i_stop="91648" i_length="1476"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="91647" e_stop="91612" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93598" stop="93577"/>
              <exon start="93508" stop="93124"/>
              <exon start="91647" stop="91612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301133" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGATCCTCATGGATTGTCAA : ATGCCGAAGATGGATGGTTATGAAGCAACAAAGGCAATTAGAAAATCAGAAATGGGGACAGGAACACACATTCCCATTGTTGCACTAACAGCTCATGCAATGTCATCAGATGAAGCAAAATGCTTACAGGTTGGTATGGATGCTTATTTAACCAAGCCCATAGACAGCAAGTTGATGGTTTCCACCATTCTTTCCTTGACTAAAAGAAAAGCCTAACCATCATACCTCTCTATCAAAAACGGAAGAAACAAACAAAAATGGAAGAGCTCAGAAAACTCATGAGCTTAAAGCAGAGCTTTGATAAGCAATAGTATTGCAATCTGTACAGGAAACTAACTTTGTAACTGTTCTATAGCTTATGCAAAAGTCTCAATAAGTTTATCAG : AGAAAAAAAATAAAAAAAATTGCTTTGAGATGTATT</gDNA_template>
            <first_frame> L  D  P  H  G  L  S   : N  A  E  D  G  W  L  *  S  N  K  G  N  *  K  I  R  N  G  D  R  N  T  H  S  H  C  C  T  N  S  S  C  N  V  I  R  *  S  K  M  L  T  G  W  Y  G  C  L  F  N  Q  A  H  R  Q  Q  V  D  G  F  H  H  S  F  L  D  *  K  K  S  L  T  I  I  P  L  Y  Q  K  R  K  K  Q  T  K  M  E  E  L  R  K  L  M  S  L  K  Q  S  F  D  K  Q  *  Y  C  N  L  Y  R  K  L  T  L  *  L  F  Y  S  L  C  K  S  L  N  K  F  I  R :   E  K  K  *  K  K  L  L  *  D  V   </first_frame>
            <second_frame>  L  I  L  M  D  C  Q  :  M  P  K  M  D  G  Y  E  A  T  K  A  I  R  K  S  E  M  G  T  G  T  H  I  P  I  V  A  L  T  A  H  A  M  S  S  D  E  A  K  C  L  Q  V  G  M  D  A  Y  L  T  K  P  I  D  S  K  L  M  V  S  T  I  L  S  L  T  K  R  K  A  *  P  S  Y  L  S  I  K  N  G  R  N  K  Q  K  W  K  S  S  E  N  S  *  A  *  S  R  A  L  I  S  N  S  I  A  I  C  T  G  N  *  L  C  N  C  S  I  A  Y  A  K  V  S  I  S  L  S   : E  K  K  N  K  K  N  C  F  E  M  Y  </second_frame>
            <third_frame>   *  S  S  W  I  V  K :   C  R  R  W  M  V  M  K  Q  Q  R  Q  L  E  N  Q  K  W  G  Q  E  H  T  F  P  L  L  H  *  Q  L  M  Q  C  H  Q  M  K  Q  N  A  Y  R  L  V  W  M  L  I  *  P  S  P  *  T  A  S  *  W  F  P  P  F  F  P  *  L  K  E  K  P  N  H  H  T  S  L  S  K  T  E  E  T  N  K  N  G  R  A  Q  K  T  H  E  L  K  A  E  L  *  *  A  I  V  L  Q  S  V  Q  E  T  N  F  V  T  V  L  *  L  M  Q  K  S  Q  *  V  Y  Q  :  R  K  K  I  K  K  I  A  L  R  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93597" stop="93577"/>
                    <exon start="93508" stop="93293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILMDCQMPKMDGYEATKAIRKSEMGTGTHIPIVALTAHAMSSDEAKCLQVGMDAYLTKPIDSKLMVSTILSLTKRKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93436" e_stop="93046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="93436" e_stop="93046" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93436" stop="93046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCATTGTTGCACTAACAGCTCATGCAATGTCATCAGATGAAGCAAAATGCTTACAGGTTGGTATGGATGCTTATTTAACCAAGCCCATAGACAGCAAGTTGATGGTTTCCACCATTCTTTCCTTGACTAAAAGAAAAGCCTAACCATCATACCTCTCTATCAAAAACGGAAGAAACAAACAAAAATGGAAGAGCTCAGAAAACTCATGAGCTTAAAGCAGAGCTTTGATAAGCAATAGTATTGCAATCTGTACAGGAAACTAACTTTGTAACTGTTCTATAGCTTATGCAAAAGTCTCAATAAGTTTATCAGATTTTTTATTAGAAAAAGTATGGAAATCTGTACAGGAAATGTCTGTAAACACTAATTTTGCATCTGTTATAGTTAAAG</gDNA_template>
            <first_frame> P  I  V  A  L  T  A  H  A  M  S  S  D  E  A  K  C  L  Q  V  G  M  D  A  Y  L  T  K  P  I  D  S  K  L  M  V  S  T  I  L  S  L  T  K  R  K  A  *  P  S  Y  L  S  I  K  N  G  R  N  K  Q  K  W  K  S  S  E  N  S  *  A  *  S  R  A  L  I  S  N  S  I  A  I  C  T  G  N  *  L  C  N  C  S  I  A  Y  A  K  V  S  I  S  L  S  D  F  L  L  E  K  V  W  K  S  V  Q  E  M  S  V  N  T  N  F  A  S  V  I  V  K  </first_frame>
            <second_frame>  P  L  L  H  *  Q  L  M  Q  C  H  Q  M  K  Q  N  A  Y  R  L  V  W  M  L  I  *  P  S  P  *  T  A  S  *  W  F  P  P  F  F  P  *  L  K  E  K  P  N  H  H  T  S  L  S  K  T  E  E  T  N  K  N  G  R  A  Q  K  T  H  E  L  K  A  E  L  *  *  A  I  V  L  Q  S  V  Q  E  T  N  F  V  T  V  L  *  L  M  Q  K  S  Q  *  V  Y  Q  I  F  Y  *  K  K  Y  G  N  L  Y  R  K  C  L  *  T  L  I  L  H  L  L  *  L  K </second_frame>
            <third_frame>   H  C  C  T  N  S  S  C  N  V  I  R  *  S  K  M  L  T  G  W  Y  G  C  L  F  N  Q  A  H  R  Q  Q  V  D  G  F  H  H  S  F  L  D  *  K  K  S  L  T  I  I  P  L  Y  Q  K  R  K  K  Q  T  K  M  E  E  L  R  K  L  M  S  L  K  Q  S  F  D  K  Q  *  Y  C  N  L  Y  R  K  L  T  L  *  L  F  Y  S  L  C  K  S  L  N  K  F  I  R  F  F  I  R  K  S  M  E  I  C  T  G  N  V  C  K  H  *  F  C  I  C  Y  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N19.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97364" PGL_stop="95970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97364" e_stop="97047"/>
            <exon e_start="96955" e_stop="96708"/>
            <exon e_start="96569" e_stop="96410"/>
            <exon e_start="96199" e_stop="96073"/>
            <exon e_start="95983" e_stop="95970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.608" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97364" e_stop="97047" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.608" acc_prob="0.867">
            <gDNA_intron_boundary i_start="97046" i_stop="96956" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96955" e_stop="96708" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="96707" i_stop="96570" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96569" e_stop="96410" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.948">
            <gDNA_intron_boundary i_start="96409" i_stop="96200" i_length="210"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96199" e_stop="96073" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96072" i_stop="95984" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.929">
            <gDNA_exon_boundary e_start="95983" e_stop="95970" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97364" stop="97047"/>
              <exon start="96955" stop="96708"/>
              <exon start="96569" stop="96410"/>
              <exon start="96199" stop="96073"/>
              <exon start="95983" stop="95970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACTGTATAGTGTAGGTCAATTGATGAAAGAAATTGTTGAGTTTCATAGTGGTCACATTTATTTAACCTCTCAAGAAGGATGGTTGCTCGCTACATCCACGAATAGCCCTCTCTTGATGAATACTACAAAAGGACCAAAGCTAATGATGGCTATTGATTCTGAAGACCCCGTTATACGATCTGGGGCTGAGTGCTTACAGAAGGATTATGGAAAGAGGCTTACCCCAAGTCAAGAAGTGCACATAGAGAATGCTAAACTTGGGAATCAGCTCTATTATATTGACTCATTTTACCTGCAGTTAAAGAGACTTCCAATG : GTAGGAGTTATCATCATTCCAAGGAAATATATAATGGGAAAGGTAGATGAGAGGGCTATCAAGACTCTTGTAATATTGATCTCAGCATCAATATGCATCCTAATCATTGGATGTGTCTGCATCTTCGTACTAACAGATGGAGTGTCAAAGGAAATGAAACTTAGAGCAGAGCTGATAAGCCAGTTAGATGCAAGAAGGAAAGCAGAGGCATCGAGCAATTACAAAAGCCAATTTCTAGCGAACATGAG : TCATGAATTACGAACACCTATGGCTGCAGTTATTGGCTTGCTGGACATTCTTATAAGTGATGGTTTTCTTACAAATGAACAGTATGCAACTATTACTCAAATTCGTAAATGCTCAACTGCCTTGCTTCGGCTTCTAAACAACATTTTGGATCTCAGTAAG : GTAGAATCTGGAAAACTAGTGTTGGAAGAAACAGAATTTGACTTGGCTCGAGAACTTGAAGGACTTGTTGATATGTTCTCTGTCCAGTGCATTAATCACAATGTTGAGACAGTTCTAGATCTCTCTG : ATGATATGCCAAAA</gDNA_template>
            <first_frame> A  L  Y  S  V  G  Q  L  M  K  E  I  V  E  F  H  S  G  H  I  Y  L  T  S  Q  E  G  W  L  L  A  T  S  T  N  S  P  L  L  M  N  T  T  K  G  P  K  L  M  M  A  I  D  S  E  D  P  V  I  R  S  G  A  E  C  L  Q  K  D  Y  G  K  R  L  T  P  S  Q  E  V  H  I  E  N  A  K  L  G  N  Q  L  Y  Y  I  D  S  F  Y  L  Q  L  K  R  L  P  M  :  V  G  V  I  I  I  P  R  K  Y  I  M  G  K  V  D  E  R  A  I  K  T  L  V  I  L  I  S  A  S  I  C  I  L  I  I  G  C  V  C  I  F  V  L  T  D  G  V  S  K  E  M  K  L  R  A  E  L  I  S  Q  L  D  A  R  R  K  A  E  A  S  S  N  Y  K  S  Q  F  L  A  N  M  S :   H  E  L  R  T  P  M  A  A  V  I  G  L  L  D  I  L  I  S  D  G  F  L  T  N  E  Q  Y  A  T  I  T  Q  I  R  K  C  S  T  A  L  L  R  L  L  N  N  I  L  D  L  S  K  :  V  E  S  G  K  L  V  L  E  E  T  E  F  D  L  A  R  E  L  E  G  L  V  D  M  F  S  V  Q  C  I  N  H  N  V  E  T  V  L  D  L  S   : D  D  M  P  K </first_frame>
            <second_frame>  H  C  I  V  *  V  N  *  *  K  K  L  L  S  F  I  V  V  T  F  I  *  P  L  K  K  D  G  C  S  L  H  P  R  I  A  L  S  *  *  I  L  Q  K  D  Q  S  *  *  W  L  L  I  L  K  T  P  L  Y  D  L  G  L  S  A  Y  R  R  I  M  E  R  G  L  P  Q  V  K  K  C  T  *  R  M  L  N  L  G  I  S  S  I  I  L  T  H  F  T  C  S  *  R  D  F  Q  W :   *  E  L  S  S  F  Q  G  N  I  *  W  E  R  *  M  R  G  L  S  R  L  L  *  Y  *  S  Q  H  Q  Y  A  S  *  S  L  D  V  S  A  S  S  Y  *  Q  M  E  C  Q  R  K  *  N  L  E  Q  S  *  *  A  S  *  M  Q  E  G  K  Q  R  H  R  A  I  T  K  A  N  F  *  R  T  *   : V  M  N  Y  E  H  L  W  L  Q  L  L  A  C  W  T  F  L  *  V  M  V  F  L  Q  M  N  S  M  Q  L  L  L  K  F  V  N  A  Q  L  P  C  F  G  F  *  T  T  F  W  I  S  V  R :   *  N  L  E  N  *  C  W  K  K  Q  N  L  T  W  L  E  N  L  K  D  L  L  I  C  S  L  S  S  A  L  I  T  M  L  R  Q  F  *  I  S  L  :  M  I  C  Q   </second_frame>
            <third_frame>   T  V  *  C  R  S  I  D  E  R  N  C  *  V  S  *  W  S  H  L  F  N  L  S  R  R  M  V  A  R  Y  I  H  E  *  P  S  L  D  E  Y  Y  K  R  T  K  A  N  D  G  Y  *  F  *  R  P  R  Y  T  I  W  G  *  V  L  T  E  G  L  W  K  E  A  Y  P  K  S  R  S  A  H  R  E  C  *  T  W  E  S  A  L  L  Y  *  L  I  L  P  A  V  K  E  T  S  N   : G  R  S  Y  H  H  S  K  E  I  Y  N  G  K  G  R  *  E  G  Y  Q  D  S  C  N  I  D  L  S  I  N  M  H  P  N  H  W  M  C  L  H  L  R  T  N  R  W  S  V  K  G  N  E  T  *  S  R  A  D  K  P  V  R  C  K  K  E  S  R  G  I  E  Q  L  Q  K  P  I  S  S  E  H  E  :  S  *  I  T  N  T  Y  G  C  S  Y  W  L  A  G  H  S  Y  K  *  W  F  S  Y  K  *  T  V  C  N  Y  Y  S  N  S  *  M  L  N  C  L  A  S  A  S  K  Q  H  F  G  S  Q  *   : G  R  I  W  K  T  S  V  G  R  N  R  I  *  L  G  S  R  T  *  R  T  C  *  Y  V  L  C  P  V  H  *  S  Q  C  *  D  S  S  R  S  L  * :   *  Y  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97364" stop="97047"/>
                    <exon start="96955" stop="96708"/>
                    <exon start="96569" stop="96410"/>
                    <exon start="96199" stop="96073"/>
                    <exon start="95983" stop="95970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALYSVGQLMKEIVEFHSGHIYLTSQEGWLLATSTNSPLLMNTTKGPKLMMAIDSEDPVIRSGAECLQKDYGKRLTPSQEVHIENAKLGNQLYYIDSFYLQLKRLPMVGVIIIPRKYIMGKVDERAIKTLVILISASICILIIGCVCIFVLTDGVSKEMKLRAELISQLDARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDGFLTNEQYATITQIRKCSTALLRLLNNILDLSKVESGKLVLEETEFDLARELEGLVDMFSVQCINHNVETVLDLSDDMPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="114532" PGL_stop="110791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114532" e_stop="114497"/>
            <exon e_start="114287" e_stop="114068"/>
            <exon e_start="113918" e_stop="113785"/>
            <exon e_start="113226" e_stop="113167"/>
            <exon e_start="113069" e_stop="113010"/>
            <exon e_start="112831" e_stop="112760"/>
            <exon e_start="112637" e_stop="112590"/>
            <exon e_start="112509" e_stop="112390"/>
            <exon e_start="111867" e_stop="111802"/>
            <exon e_start="111719" e_stop="111607"/>
            <exon e_start="111506" e_stop="111422"/>
            <exon e_start="111259" e_stop="111149"/>
            <exon e_start="111016" e_stop="110921"/>
            <exon e_start="110834" e_stop="110791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.447" acc_prob="0.063" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.728" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.718" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114532" e_stop="114497" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="114496" i_stop="114288" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114287" e_stop="114068" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="114067" i_stop="113919" i_length="149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113918" e_stop="113785" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.447" acc_prob="0.063">
            <gDNA_intron_boundary i_start="113784" i_stop="113227" i_length="558"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113226" e_stop="113167" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113166" i_stop="113070" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113069" e_stop="113010" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.986">
            <gDNA_intron_boundary i_start="113009" i_stop="112832" i_length="178"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112831" e_stop="112760" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112759" i_stop="112638" i_length="122"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112637" e_stop="112590" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.829">
            <gDNA_intron_boundary i_start="112589" i_stop="112510" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="112509" e_stop="112390" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="112389" i_stop="111868" i_length="522"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111867" e_stop="111802" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.716" acc_prob="0.971">
            <gDNA_intron_boundary i_start="111801" i_stop="111720" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="111719" e_stop="111607" e_length="113"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111606" i_stop="111507" i_length="100"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="111506" e_stop="111422" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.728" acc_prob="0.983">
            <gDNA_intron_boundary i_start="111421" i_stop="111260" i_length="162"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="111259" e_stop="111149" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.907" acc_prob="0.823">
            <gDNA_intron_boundary i_start="111148" i_stop="111017" i_length="132"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="111016" e_stop="110921" e_length="96"/>
          </exon>
          <intron i_serial="13" don_prob="0.718" acc_prob="0.987">
            <gDNA_intron_boundary i_start="110920" i_stop="110835" i_length="86"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="110834" e_stop="110791" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114532" stop="114497"/>
              <exon start="114287" stop="114068"/>
              <exon start="113918" stop="113785"/>
              <exon start="113226" stop="113167"/>
              <exon start="113069" stop="113010"/>
              <exon start="112831" stop="112760"/>
              <exon start="112637" stop="112590"/>
              <exon start="112509" stop="112390"/>
              <exon start="111867" stop="111802"/>
              <exon start="111719" stop="111632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114163" stop="114068"/>
              <exon start="113918" stop="113785"/>
              <exon start="113226" stop="113167"/>
              <exon start="113069" stop="113010"/>
              <exon start="112831" stop="112760"/>
              <exon start="112637" stop="112590"/>
              <exon start="112509" stop="112390"/>
              <exon start="111867" stop="111802"/>
              <exon start="111719" stop="111607"/>
              <exon start="111506" stop="111422"/>
              <exon start="111259" stop="111239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114073" stop="114068"/>
              <exon start="113918" stop="113785"/>
              <exon start="113226" stop="113167"/>
              <exon start="113069" stop="113010"/>
              <exon start="112831" stop="112760"/>
              <exon start="112637" stop="112590"/>
              <exon start="112509" stop="112391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112636" stop="112590"/>
              <exon start="112509" stop="112390"/>
              <exon start="111867" stop="111802"/>
              <exon start="111719" stop="111607"/>
              <exon start="111506" stop="111422"/>
              <exon start="111259" stop="111149"/>
              <exon start="111016" stop="110921"/>
              <exon start="110834" stop="110791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGATGGAATCGAACTGATATCATCAAGATCCCG : GTCAACGATGCTGATCTTATTGTAAAAGATTCCATGGGAAATCTAATTGAGGCACAATTTATAGAGTTGGATAATATTACCAGCAACTTACGAAAGTTGTATGTTAAGGCATATCTTGGAATATCACCCAAACAAACTCCCAAATATTGGCTCTTCTTTCGAGTGTCTGTGTCACCTCTTGGCTGGAATACTTATTTTATTTCTAAAGCTTCACAGAAGG : GGAGCTCTGCGGGCTATGTCACAAAGATGGACATTCCACTGAACGAGACTGTTGAAATTGGACCAGGGAACTTAAAGGCGTCCTTTTCCTCAAGTACTGGTCAACTTAAACGTCTATATAATTCTATAACAGGA : GTTGATATACCTGTACAACAAAGCTATCTTTGGTATGCCTCGAGTTCGAACTTGGATCAG : GATTCTGGTGCCTACATTTTCAGACCCGATGGATCACCCCCAGTCATAGTTGCGAGATCA : GTTCCAATAAAGGTAATGCGTGGACCCCTGGTCGATGAAATCCACCAGCAATTCAACTCATGGATATCTCAG : GTAATTAGGATTTACAAAGACAAAGAACACGCTGAACTCGAATTCACT : ATTGGTCCTATACCGACAGAAGATAGTGTTGGAAAAGAGGTCATTACCAAAATCACAGCAAATATGGCCACTGATAAAGTGTTCTACACTGACTCTAATGGGAGGGACTTTCTTAAAAGA : GTTAGAAATTACAGAGCTGATTGGGACCTCCAAGTTACTCAACCTGTTGCTGGGAACTATTATCCA : GTAAATCTTGGAATGTACATAACAGATAACAAATCAGAATTGTCTGTTTTGGTAGATCGTGCAACAGGTGGAGCCAGCATAAAGGATGGAGAAATAGAACTCATGTTGCACAG : GCGCTTGATCAATGATGATGGTAGAGGAGTGGGTGAAGCCCTTGATGAGCCTGTCTGTGTGGGGAGTACATGTGAGGGACTCACG : GTTCGAGGGAACTACTATCTGGGAATTCATAAAAACAGTGATGGTTCACGTTGGCGCAGAACAACTGGCCAAGAAATTTATTCACCTCTTATTTTAGCTTTTGCACATGAG : AATCAGGAAGAATGGAAAGCTTCGCATATGACCAAAGCCACCATCATGAATCCCAATTATAGTTTACCTCCTAATGTTGCACTGATTACTCTCCAG : GAGTTGGATAACGGAGGTGTACTTATCCGTTTGGCTCATCTATA</gDNA_template>
            <first_frame> L  G  W  N  R  T  D  I  I  K  I  P  :  V  N  D  A  D  L  I  V  K  D  S  M  G  N  L  I  E  A  Q  F  I  E  L  D  N  I  T  S  N  L  R  K  L  Y  V  K  A  Y  L  G  I  S  P  K  Q  T  P  K  Y  W  L  F  F  R  V  S  V  S  P  L  G  W  N  T  Y  F  I  S  K  A  S  Q  K   : G  S  S  A  G  Y  V  T  K  M  D  I  P  L  N  E  T  V  E  I  G  P  G  N  L  K  A  S  F  S  S  S  T  G  Q  L  K  R  L  Y  N  S  I  T  G  :  V  D  I  P  V  Q  Q  S  Y  L  W  Y  A  S  S  S  N  L  D  Q  :  D  S  G  A  Y  I  F  R  P  D  G  S  P  P  V  I  V  A  R  S  :  V  P  I  K  V  M  R  G  P  L  V  D  E  I  H  Q  Q  F  N  S  W  I  S  Q  :  V  I  R  I  Y  K  D  K  E  H  A  E  L  E  F  T  :  I  G  P  I  P  T  E  D  S  V  G  K  E  V  I  T  K  I  T  A  N  M  A  T  D  K  V  F  Y  T  D  S  N  G  R  D  F  L  K  R  :  V  R  N  Y  R  A  D  W  D  L  Q  V  T  Q  P  V  A  G  N  Y  Y  P  :  V  N  L  G  M  Y  I  T  D  N  K  S  E  L  S  V  L  V  D  R  A  T  G  G  A  S  I  K  D  G  E  I  E  L  M  L  H  R :   R  L  I  N  D  D  G  R  G  V  G  E  A  L  D  E  P  V  C  V  G  S  T  C  E  G  L  T  :  V  R  G  N  Y  Y  L  G  I  H  K  N  S  D  G  S  R  W  R  R  T  T  G  Q  E  I  Y  S  P  L  I  L  A  F  A  H  E  :  N  Q  E  E  W  K  A  S  H  M  T  K  A  T  I  M  N  P  N  Y  S  L  P  P  N  V  A  L  I  T  L  Q  :  E  L  D  N  G  G  V  L  I  R  L  A  H  L   </first_frame>
            <second_frame>  L  D  G  I  E  L  I  S  S  R  S  R :   S  T  M  L  I  L  L  *  K  I  P  W  E  I  *  L  R  H  N  L  *  S  W  I  I  L  P  A  T  Y  E  S  C  M  L  R  H  I  L  E  Y  H  P  N  K  L  P  N  I  G  S  S  F  E  C  L  C  H  L  L  A  G  I  L  I  L  F  L  K  L  H  R  R  :  G  A  L  R  A  M  S  Q  R  W  T  F  H  *  T  R  L  L  K  L  D  Q  G  T  *  R  R  P  F  P  Q  V  L  V  N  L  N  V  Y  I  I  L  *  Q  E :   L  I  Y  L  Y  N  K  A  I  F  G  M  P  R  V  R  T  W  I  R :   I  L  V  P  T  F  S  D  P  M  D  H  P  Q  S  *  L  R  D  Q :   F  Q  *  R  *  C  V  D  P  W  S  M  K  S  T  S  N  S  T  H  G  Y  L  R :   *  L  G  F  T  K  T  K  N  T  L  N  S  N  S  L :   L  V  L  Y  R  Q  K  I  V  L  E  K  R  S  L  P  K  S  Q  Q  I  W  P  L  I  K  C  S  T  L  T  L  M  G  G  T  F  L  K  E :   L  E  I  T  E  L  I  G  T  S  K  L  L  N  L  L  L  G  T  I  I  Q :   *  I  L  E  C  T  *  Q  I  T  N  Q  N  C  L  F  W  *  I  V  Q  Q  V  E  P  A  *  R  M  E  K  *  N  S  C  C  T   : G  A  *  S  M  M  M  V  E  E  W  V  K  P  L  M  S  L  S  V  W  G  V  H  V  R  D  S  R :   F  E  G  T  T  I  W  E  F  I  K  T  V  M  V  H  V  G  A  E  Q  L  A  K  K  F  I  H  L  L  F  *  L  L  H  M  R :   I  R  K  N  G  K  L  R  I  *  P  K  P  P  S  *  I  P  I  I  V  Y  L  L  M  L  H  *  L  L  S  R :   S  W  I  T  E  V  Y  L  S  V  W  L  I  Y  </second_frame>
            <third_frame>   W  M  E  S  N  *  Y  H  Q  D  P   : G  Q  R  C  *  S  Y  C  K  R  F  H  G  K  S  N  *  G  T  I  Y  R  V  G  *  Y  Y  Q  Q  L  T  K  V  V  C  *  G  I  S  W  N  I  T  Q  T  N  S  Q  I  L  A  L  L  S  S  V  C  V  T  S  W  L  E  Y  L  F  Y  F  *  S  F  T  E  G :   E  L  C  G  L  C  H  K  D  G  H  S  T  E  R  D  C  *  N  W  T  R  E  L  K  G  V  L  F  L  K  Y  W  S  T  *  T  S  I  *  F  Y  N  R   : S  *  Y  T  C  T  T  K  L  S  L  V  C  L  E  F  E  L  G  S   : G  F  W  C  L  H  F  Q  T  R  W  I  T  P  S  H  S  C  E  I   : S  S  N  K  G  N  A  W  T  P  G  R  *  N  P  P  A  I  Q  L  M  D  I  S   : G  N  *  D  L  Q  R  Q  R  T  R  *  T  R  I  H   : Y  W  S  Y  T  D  R  R  *  C  W  K  R  G  H  Y  Q  N  H  S  K  Y  G  H  *  *  S  V  L  H  *  L  *  W  E  G  L  S  *  K   : S  *  K  L  Q  S  *  L  G  P  P  S  Y  S  T  C  C  W  E  L  L  S   : S  K  S  W  N  V  H  N  R  *  Q  I  R  I  V  C  F  G  R  S  C  N  R  W  S  Q  H  K  G  W  R  N  R  T  H  V  A  Q  :  A  L  D  Q  *  *  W  *  R  S  G  *  S  P  *  *  A  C  L  C  G  E  Y  M  *  G  T  H   : G  S  R  E  L  L  S  G  N  S  *  K  Q  *  W  F  T  L  A  Q  N  N  W  P  R  N  L  F  T  S  Y  F  S  F  C  T  *   : E  S  G  R  M  E  S  F  A  Y  D  Q  S  H  H  H  E  S  Q  L  *  F  T  S  *  C  C  T  D  Y  S  P   : G  V  G  *  R  R  C  T  Y  P  F  G  S  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114532" stop="114497"/>
                    <exon start="114287" stop="114068"/>
                    <exon start="113918" stop="113785"/>
                    <exon start="113226" stop="113167"/>
                    <exon start="113069" stop="113010"/>
                    <exon start="112831" stop="112760"/>
                    <exon start="112637" stop="112590"/>
                    <exon start="112509" stop="112390"/>
                    <exon start="111867" stop="111802"/>
                    <exon start="111719" stop="111607"/>
                    <exon start="111506" stop="111422"/>
                    <exon start="111259" stop="111149"/>
                    <exon start="111016" stop="110921"/>
                    <exon start="110834" stop="110793"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1263</number_coding_nucleotides>
                  <number_encoded_amino_acids>421</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGWNRTDIIKIPVNDADLIVKDSMGNLIEAQFIELDNITSNLRKLYVKAYLGISPKQTPKYWLFFRVSVSPLGWNTYFISKASQKGSSAGYVTKMDIPLNETVEIGPGNLKASFSSSTGQLKRLYNSITGVDIPVQQSYLWYASSSNLDQDSGAYIFRPDGSPPVIVARSVPIKVMRGPLVDEIHQQFNSWISQVIRIYKDKEHAELEFTIGPIPTEDSVGKEVITKITANMATDKVFYTDSNGRDFLKRVRNYRADWDLQVTQPVAGNYYPVNLGMYITDNKSELSVLVDRATGGASIKDGEIELMLHRRLINDDGRGVGEALDEPVCVGSTCEGLTVRGNYYLGIHKNSDGSRWRRTTGQEIYSPLILAFAHENQEEWKASHMTKATIMNPNYSLPPNVALITLQELDNGGVLIRLAHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="117547" PGL_stop="116015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117547" e_stop="117428"/>
            <exon e_start="117277" e_stop="117158"/>
            <exon e_start="117073" e_stop="116984"/>
            <exon e_start="116889" e_stop="116818"/>
            <exon e_start="116699" e_stop="116586"/>
            <exon e_start="116293" e_stop="116193"/>
            <exon e_start="116108" e_stop="116015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117547" e_stop="117428" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.882">
            <gDNA_intron_boundary i_start="117427" i_stop="117278" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117277" e_stop="117158" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.919" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117157" i_stop="117074" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117073" e_stop="116984" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116983" i_stop="116890" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116889" e_stop="116818" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="116817" i_stop="116700" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116699" e_stop="116586" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116585" i_stop="116294" i_length="292"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116293" e_stop="116193" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.907" acc_prob="0.969">
            <gDNA_intron_boundary i_start="116192" i_stop="116109" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="116108" e_stop="116015" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117547" stop="117428"/>
              <exon start="117277" stop="117158"/>
              <exon start="117073" stop="116984"/>
              <exon start="116889" stop="116818"/>
              <exon start="116699" stop="116586"/>
              <exon start="116293" stop="116193"/>
              <exon start="116108" stop="116015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCAGACAACACTAGGCCATCAACTGATAAAGAATGAATTCAATATCACTCCTCGTGCAGGATGGCAGATCGATCCATTTGGGCACTCTGCCGTGCAAGCTTATCTTCTTGGCGCAGAG : GTAGGATTTGATTCTGTTCACTTTGCGCGCATTGATTATCAAGACAGAGCAAAACGTAAGGAGGATAAAGCTCTTGAGGTTATATGGCGTGGTTCGAGAACATTTGGTTCTTCCTCCCAG : ATATTTACCAACGCATTTCCTGTACATTATAGTCCACCACATGGTTTTCATTTCGAAGTGGATGATGCTGATGATTTTGTTCCAGTCCAG : GATGATCCTCTTATCTTTGACATAAATGTCGATATACGGGTTAATGACTTCATCAATGCTGCAATTACACAA : GCAAACGTGACACGTACGAATCACGTCATGTGGACCATGGGAGATGACTTCCAATACCAATATGCTGAATCTTGGTTCAAGGAAATGGATAAATTAATTCACTATGTCAACAAG : GACGGTCGAGTGAATGCATTGTACTCTACTCCATCAATTTATGTAGATACAAAACATGCAACCAATGAATCTTGGCCTCTAAAAACTGATGATTACTTTCC : ATATGCAGATGGTGAAAATTCTTATTGGACTGGTTTCTTTACCAGTCGACCAGCTTTAAAGCGATATATTCGTATGCTAAGTGGATATTATCTG</gDNA_template>
            <first_frame> D  Q  T  T  L  G  H  Q  L  I  K  N  E  F  N  I  T  P  R  A  G  W  Q  I  D  P  F  G  H  S  A  V  Q  A  Y  L  L  G  A  E  :  V  G  F  D  S  V  H  F  A  R  I  D  Y  Q  D  R  A  K  R  K  E  D  K  A  L  E  V  I  W  R  G  S  R  T  F  G  S  S  S  Q  :  I  F  T  N  A  F  P  V  H  Y  S  P  P  H  G  F  H  F  E  V  D  D  A  D  D  F  V  P  V  Q  :  D  D  P  L  I  F  D  I  N  V  D  I  R  V  N  D  F  I  N  A  A  I  T  Q  :  A  N  V  T  R  T  N  H  V  M  W  T  M  G  D  D  F  Q  Y  Q  Y  A  E  S  W  F  K  E  M  D  K  L  I  H  Y  V  N  K  :  D  G  R  V  N  A  L  Y  S  T  P  S  I  Y  V  D  T  K  H  A  T  N  E  S  W  P  L  K  T  D  D  Y  F  P :   Y  A  D  G  E  N  S  Y  W  T  G  F  F  T  S  R  P  A  L  K  R  Y  I  R  M  L  S  G  Y  Y  L </first_frame>
            <second_frame>  I  R  Q  H  *  A  I  N  *  *  R  M  N  S  I  S  L  L  V  Q  D  G  R  S  I  H  L  G  T  L  P  C  K  L  I  F  L  A  Q  R :   *  D  L  I  L  F  T  L  R  A  L  I  I  K  T  E  Q  N  V  R  R  I  K  L  L  R  L  Y  G  V  V  R  E  H  L  V  L  P  P  R :   Y  L  P  T  H  F  L  Y  I  I  V  H  H  M  V  F  I  S  K  W  M  M  L  M  I  L  F  Q  S  R :   M  I  L  L  S  L  T  *  M  S  I  Y  G  L  M  T  S  S  M  L  Q  L  H  K :   Q  T  *  H  V  R  I  T  S  C  G  P  W  E  M  T  S  N  T  N  M  L  N  L  G  S  R  K  W  I  N  *  F  T  M  S  T  R :   T  V  E  *  M  H  C  T  L  L  H  Q  F  M  *  I  Q  N  M  Q  P  M  N  L  G  L  *  K  L  M  I  T  F   : H  M  Q  M  V  K  I  L  I  G  L  V  S  L  P  V  D  Q  L  *  S  D  I  F  V  C  *  V  D  I  I   </second_frame>
            <third_frame>   S  D  N  T  R  P  S  T  D  K  E  *  I  Q  Y  H  S  S  C  R  M  A  D  R  S  I  W  A  L  C  R  A  S  L  S  S  W  R  R   : G  R  I  *  F  C  S  L  C  A  H  *  L  S  R  Q  S  K  T  *  G  G  *  S  S  *  G  Y  M  A  W  F  E  N  I  W  F  F  L  P   : D  I  Y  Q  R  I  S  C  T  L  *  S  T  T  W  F  S  F  R  S  G  *  C  *  *  F  C  S  S  P   : G  *  S  S  Y  L  *  H  K  C  R  Y  T  G  *  *  L  H  Q  C  C  N  Y  T   : S  K  R  D  T  Y  E  S  R  H  V  D  H  G  R  *  L  P  I  P  I  C  *  I  L  V  Q  G  N  G  *  I  N  S  L  C  Q  Q   : G  R  S  S  E  C  I  V  L  Y  S  I  N  L  C  R  Y  K  T  C  N  Q  *  I  L  A  S  K  N  *  *  L  L  S  :  I  C  R  W  *  K  F  L  L  D  W  F  L  Y  Q  S  T  S  F  K  A  I  Y  S  Y  A  K  W  I  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117547" stop="117428"/>
                    <exon start="117277" stop="117158"/>
                    <exon start="117073" stop="116984"/>
                    <exon start="116889" stop="116818"/>
                    <exon start="116699" stop="116586"/>
                    <exon start="116293" stop="116193"/>
                    <exon start="116108" stop="116015"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTLGHQLIKNEFNITPRAGWQIDPFGHSAVQAYLLGAEVGFDSVHFARIDYQDRAKRKEDKALEVIWRGSRTFGSSSQIFTNAFPVHYSPPHGFHFEVDDADDFVPVQDDPLIFDINVDIRVNDFINAAITQANVTRTNHVMWTMGDDFQYQYAESWFKEMDKLIHYVNKDGRVNALYSTPSIYVDTKHATNESWPLKTDDYFPYADGENSYWTGFFTSRPALKRYIRMLSGYYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="127625" PGL_stop="120081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127625" e_stop="127445"/>
            <exon e_start="127349" e_stop="127236"/>
            <exon e_start="127110" e_stop="127005"/>
            <exon e_start="125313" e_stop="125199"/>
            <exon e_start="125117" e_stop="124908"/>
            <exon e_start="124781" e_stop="124472"/>
            <exon e_start="124019" e_stop="123896"/>
            <exon e_start="123037" e_stop="122934"/>
            <exon e_start="122816" e_stop="122748"/>
            <exon e_start="121879" e_stop="121805"/>
            <exon e_start="121703" e_stop="121339"/>
            <exon e_start="120102" e_stop="120081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.521" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.498" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.823" e_score="0.995"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127625" e_stop="127445" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127349" e_stop="127236" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127110" e_stop="127005" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125313" e_stop="125199" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125117" e_stop="124908" e_length="210"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124781" e_stop="124472" e_length="310"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124019" e_stop="123896" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.863">
            <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="123037" e_stop="122934" e_length="104"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="122816" e_stop="122748" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.498">
            <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="121879" e_stop="121805" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101"/>
          </intron>
          <exon e_serial="11" e_score="0.995">
            <gDNA_exon_boundary e_start="121703" e_stop="121339" e_length="365"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="121338" i_stop="120103" i_length="1236"/>
          </intron>
          <exon e_serial="12" e_score="0.818">
            <gDNA_exon_boundary e_start="120102" e_stop="120081" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127625" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127596" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="125083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127551" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127546" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127546" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127532" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127528" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127526" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127518" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127508" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127505" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127501" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127455" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127334" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127312" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127293" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127292" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127287" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127057" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="123002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125214" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125113" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125050" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124760" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124654" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124647" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123932" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123023" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121339"/>
              <exon start="120102" stop="120081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368734" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122776" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121850" stop="121805"/>
              <exon start="121703" stop="121339"/>
              <exon start="120102" stop="120081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237618" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCTACGCGAACTATCCTGTATCTTCTTCGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG : GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG : TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG : GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG : CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG : TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG : GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG : CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA : CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG : AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG : GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTA : ACCAAAAAAAAAAAAAAACAGG</gDNA_template>
            <first_frame> P  L  R  E  L  S  C  I  F  F  G  L  *  F  F  L  L  K  A  P  T  P  S  A  S  K  L  K  F  L  P  I  Y  F  S  E  R  T  K  R  F  L  S  L  I  F  Q  L  L  D  F  S  S  I  V  N  H  G  A  R   : G  D  N  D  L  H  R  Q  F  G  V  D  E  K  R  *  L  L  A  Q  *  V  P  S  S  S  R  R  C  *  S  N  L  W  C  Q  N  P   : V  *  S  R  E  Y  S  W  N  F  D  D  G  W  *  R  G  S  S  V  S  H  S  D  Q  R  S  W  K  N  F  S  L  Y  A  R :   I  G  D  R  R  *  D  E  F  G  C  W  N  P  G  S  P  V  G  F  E  A  P  T  K  Q  E  A  T  T  K  D  Y  C  F  C  W  Q  :  P  C  *  I  *  Q  E  G  L  G  D  D  W  E  K  V  E  E  E  *  C  S  S  *  C  G  *  F  W  *  R  *  *  R  E  S  *  E  A  R  G  T  S  C  C  A  *  Y  Q  R  Q  *  S  H  H  S  Y  S  S  W  S  *  C  S  L  *  C  S  H  K  :  Y  S  Y  F  H  W  *  W  R  R  W  Q  W  I  C  C  C  C  C  S  G  C  C  W  W  S  V  W  I  *  F  W  C  R  S  *  F  G  S  R  T  C  S  R  T  P  S  F  N  G  G  R  K  G  E  A  G  S  S  C  K  E  G  C  R  R  S  W  *  P  R  E  R  R  K  S  V  Y  F  S  G  C  C  Y  G  *  K  C  Q  C  R  N  F  *  A  *  K  Q  S  N  *  P  N   : G  *  *  E  C  L  V  T  A  S  P  C  N  V  D  G  *  L  V  L  Q  C  C  Y  T  R  H  *  H  V  R  S  G  F  *  R  S  R  L  G  T  C :   S  S  T  V  C  A  R  Q  Y  K  *  S  V  K  S  D  R  Y  E  *  A  V  G  R  S  I  I  C  V  I  N  P  C  L   : T  S  R  C  *  S  K  R  S  F  C  Q  R  F  A  C  F  H  A  R  A  V  R   : E  E  G  *  G  Q  *  *  G  T  E  R  G  Q  E  V  K  M  R  T  T  I  C  S  S   : G  R  E  V  Q  M  V  I  K  Y  A  A  A  A  E  I  A  H  W  N  G  S  Y  Y  V  C  G  V  G  L  Y  L  I  T  L  E  G  L  I  E  S  S  L  K  Y  Y  Y  K  I  M  E  L  S  V  R  F  I  C  G  G  F  Q  M  I  C  I  S  L  S  K  N  H  V  K  D  R  S  *  Q  E  T  R  W  C  L  P  S  A  T  Q  R  F  L  L  *  K  I  M  R  P  Q  K  I  Y  E  V  T  I  N  V  S  V  S  K  T  F  N  F  S  L  L  L  :  T  K  K  K  K  K  Q  </first_frame>
            <second_frame>  R  Y  A  N  Y  P  V  S  S  S  D  C  D  F  S  S  L  K  H  Q  L  P  P  Q  V  N  S  N  S  F  Q  F  I  F  Q  R  E  R  K  D  F  S  V  *  S  S  N  Y  W  I  F  L  Q  S  L  T  M  V  L  E  :  A  T  M  I  C  I  D  N  S  E  W  M  R  N  G  D  Y  S  P  N  R  F  Q  A  L  A  D  A  V  N  L  I  C  G  A  K  T  Q  :  S  N  P  E  N  T  V  G  I  L  T  M  A  G  K  G  V  R  V  L  V  T  P  T  S  D  L  G  K  I  L  A  C  M  H   : G  L  E  I  G  G  E  M  N  L  A  A  G  I  Q  V  A  Q  L  A  L  K  H  R  Q  N  K  K  Q  Q  Q  R  I  I  V  F  A  G  S :   P  V  K  Y  D  K  K  V  L  E  M  I  G  R  K  L  K  K  N  S  V  A  L  D  V  V  N  F  G  E  D  D  E  G  K  A  E  K  L  E  A  L  V  A  A  L  N  T  N  D  S  S  H  I  I  H  I  P  P  G  P  N  A  L  S  D  V  L  I  S :   T  P  I  F  T  G  D  G  E  G  G  S  G  F  A  A  A  A  A  A  A  A  A  G  G  V  S  G  Y  D  F  G  V  D  P  N  L  D  P  E  L  A  L  A  L  R  V  S  M  E  E  E  R  A  R  Q  E  A  A  A  K  K  A  A  E  E  A  G  N  Q  E  K  G  E  N  Q  S  T  S  Q  D  V  A  M  A  E  N  V  N  A  G  T  S  E  P  E  S  K  A  T  D  L  M  :  D  D  E  N  A  L  L  Q  Q  A  L  A  M  S  M  D  D  S  S  S  N  V  A  T  R  D  T  D  M  S  E  A  A  S  E  D  Q  D  L  A  L   : A  L  Q  L  S  V  Q  D  S  T  N  D  Q  S  N  P  T  D  M  S  K  L  L  A  D  Q  S  F  V  S  S  I  L  A  S  :  L  P  G  V  D  P  N  D  P  S  V  K  D  L  L  A  S  M  Q  G  Q  S  E  :  K  K  D  E  D  N  D  K  E  Q  K  E  D  K  K  *  R  C  V  Q  L  F  A  A  Q  :  V  E  K  F  R  W  *  S  S  M  L  L  L  L  K  L  L  I  G  M  G  L  I  M  S  V  G  *  G  C  I  S  L  L  L  R  D  *  L  N  R  L  *  S  T  I  I  R  L  W  N  F  Q  L  D  S  F  V  V  A  S  R  *  F  V  F  L  S  Q  K  I  T  L  R  T  D  P  S  K  K  Q  D  G  V  Y  L  Q  L  P  S  V  F  F  C  E  K  L  C  V  P  K  K  S  M  K  *  Q  L  M  F  Q  C  Q  K  H  L  I  L  A  S  Y  * :   P  K  K  K  K  N  R </second_frame>
            <third_frame>   A  T  R  T  I  L  Y  L  L  R  I  V  I  F  P  P  *  S  T  N  S  L  R  K  *  T  Q  I  P  S  N  L  F  F  R  E  N  E  K  I  S  Q  F  N  L  P  I  I  G  F  F  F  N  R  *  P  W  C  S  R :   R  Q  *  S  A  S  T  I  R  S  G  *  E  T  V  I  T  R  P  I  G  S  K  L  *  Q  T  L  L  I  *  S  V  V  P  K  P  S :   L  I  P  R  I  Q  L  E  F  *  R  W  L  V  K  G  F  E  C  *  S  L  R  P  A  I  L  E  K  F  *  L  V  C  T  :  D  W  R  *  A  V  R  *  I  W  L  L  E  S  R  *  P  S  W  L  *  S  T  D  K  T  R  S  N  N  K  G  L  L  F  L  L  A   : A  L  L  N  M  T  R  R  S  W  R  *  L  G  E  S  *  R  R  I  V  *  L  L  M  W  L  I  L  V  K  M  M  K  G  K  L  R  S  *  R  H  *  L  L  R  L  I  P  T  T  V  V  T  S  F  I  F  L  L  V  L  M  L  S  L  M  F  S  *   : V  L  L  F  S  L  V  M  E  K  V  A  V  D  L  L  L  L  L  Q  R  L  L  L  V  E  C  L  D  M  I  L  V  *  I  L  I  W  I  Q  N  L  L  S  H  S  E  F  Q  W  R  K  K  G  R  G  R  K  Q  L  Q  R  R  L  Q  K  K  L  V  T  K  R  K  E  K  I  S  L  L  L  R  M  L  L  W  L  K  M  S  M  Q  E  L  L  S  L  K  A  K  Q  L  T  *  W :   M  M  R  M  P  C  Y  S  K  P  L  Q  C  R  W  M  T  R  P  P  M  L  L  H  E  T  L  T  C  Q  K  R  L  L  K  I  K  T  W  H  L  :  L  F  N  C  L  C  K  T  V  Q  M  I  S  Q  I  R  Q  I  *  V  S  C  W  Q  I  N  H  L  C  H  Q  S  L  P  H :   F  Q  V  L  I  Q  T  I  L  L  S  K  I  C  L  L  P  C  K  G  S  P  R :   R  R  M  R  T  M  I  R  N  R  K  R  T  R  S  K  D  A  Y  N  Y  L  Q  L  R :   *  R  S  S  D  G  N  Q  V  C  C  C  C  *  N  C  S  L  E  W  V  L  L  C  L  W  G  R  A  V  S  H  Y  S  *  G  T  N  *  I  V  F  K  V  L  L  *  D  Y  G  T  F  S  *  I  H  L  W  W  L  P  D  D  L  Y  F  S  L  K  K  S  R  *  G  Q  I  L  A  R  N  K  M  V  F  T  F  S  Y  P  A  F  S  F  V  K  N  Y  A  S  P  K  N  L  *  S  D  N  *  C  F  S  V  K  N  I  *  F  *  P  L  I   : N  Q  K  K  K  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127492" stop="127445"/>
                    <exon start="127349" stop="127236"/>
                    <exon start="127110" stop="127005"/>
                    <exon start="125313" stop="125199"/>
                    <exon start="125117" stop="124908"/>
                    <exon start="124781" stop="124472"/>
                    <exon start="124019" stop="123896"/>
                    <exon start="123037" stop="122934"/>
                    <exon start="122816" stop="122748"/>
                    <exon start="121879" stop="121832"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNYWIFLQSLTMVLEATMICIDNSEWMRNGDYSPNRFQALADAVNLICGAKTQSNPENTVGILTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKYDKKVLEMIGRKLKKNSVALDVVNFGEDDEGKAEKLEALVAALNTNDSSHIIHIPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEAGNQEKGENQSTSQDVAMAENVNAGTSEPESKATDLMDDENALLQQALAMSMDDSSSNVATRDTDMSEAASEDQDLALALQLSVQDSTNDQSNPTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQGQSEKKDEDNDKEQKEDKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121856" stop="121805"/>
                    <exon start="121703" stop="121471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTERGQEVKMRTTICSSGREVQMVIKYAAAAEIAHWNGSYYVCGVGLYLITLEGLIESSLKYYYKIMELSVRFICGGFQMICISLSKNHVKDRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127625" e_stop="127445"/>
            <exon e_start="127349" e_stop="127236"/>
            <exon e_start="127110" e_stop="127005"/>
            <exon e_start="125313" e_stop="125199"/>
            <exon e_start="125117" e_stop="124908"/>
            <exon e_start="124781" e_stop="124472"/>
            <exon e_start="124019" e_stop="123896"/>
            <exon e_start="123037" e_stop="122934"/>
            <exon e_start="122816" e_stop="122748"/>
            <exon e_start="121879" e_stop="121805"/>
            <exon e_start="121703" e_stop="121317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.521" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.498" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127625" e_stop="127445" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127444" i_stop="127350" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127349" e_stop="127236" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="127235" i_stop="127111" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127110" e_stop="127005" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127004" i_stop="125314" i_length="1691"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125313" e_stop="125199" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="125198" i_stop="125118" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125117" e_stop="124908" e_length="210"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="124907" i_stop="124782" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124781" e_stop="124472" e_length="310"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124471" i_stop="124020" i_length="452"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124019" e_stop="123896" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.863">
            <gDNA_intron_boundary i_start="123895" i_stop="123038" i_length="858"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="123037" e_stop="122934" e_length="104"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122933" i_stop="122817" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="122816" e_stop="122748" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.498">
            <gDNA_intron_boundary i_start="122747" i_stop="121880" i_length="868"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="121879" e_stop="121805" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="121804" i_stop="121704" i_length="101"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="121703" e_stop="121317" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127625" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127596" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="125083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127551" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127546" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127546" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127532" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127528" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127526" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127518" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127508" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127505" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127501" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127455" stop="127445"/>
              <exon start="127349" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127334" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127312" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127293" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127292" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127287" stop="127236"/>
              <exon start="127110" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127057" stop="127005"/>
              <exon start="125313" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="123002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125214" stop="125199"/>
              <exon start="125117" stop="124908"/>
              <exon start="124781" stop="124487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125113" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125050" stop="124908"/>
              <exon start="124781" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124760" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124654" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124647" stop="124472"/>
              <exon start="124019" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123932" stop="123896"/>
              <exon start="123037" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123022" stop="122934"/>
              <exon start="122816" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122776" stop="122748"/>
              <exon start="121879" stop="121805"/>
              <exon start="121703" stop="121399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255610" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCTACGCGAACTATCCTGTATCTTCTTCGGATTGTGATTTTTCCTCCTTAAAGCACCAACTCCCTCCGCAAGTAAACTCAAATTCCTTCCAATTTATTTTTCAGAGAGAACGAAAAGATTTCTCAGTTTAATCTTCCAATTATTGGATTTTTCTTCAATCGTTAACCATGGTGCTCGAG : GCGACAATGATCTGCATCGACAATTCGGAGTGGATGAGAAACGGTGATTACTCGCCCAATAGGTTCCAAGCTCTAGCAGACGCTGTTAATCTAATCTGTGGTGCCAAAACCCAG : TCTAATCCCGAGAATACAGTTGGAATTTTGACGATGGCTGGTAAAGGGGTTCGAGTGTTAGTCACTCCGACCAGCGATCTTGGAAAAATTTTAGCTTGTATGCACG : GATTGGAGATAGGCGGTGAGATGAATTTGGCTGCTGGAATCCAGGTAGCCCAGTTGGCTTTGAAGCACCGACAAAACAAGAAGCAACAACAAAGGATTATTGTTTTTGCTGGCAG : CCCTGTTAAATATGACAAGAAGGTCTTGGAGATGATTGGGAGAAAGTTGAAGAAGAATAGTGTAGCTCTTGATGTGGTTAATTTTGGTGAAGATGATGAAGGGAAAGCTGAGAAGCTAGAGGCACTAGTTGCTGCGCTTAATACCAACGACAGTAGTCACATCATTCATATTCCTCCTGGTCCTAATGCTCTCTCTGATGTTCTCATAAG : TACTCCTATTTTCACTGGTGATGGAGAAGGTGGCAGTGGATTTGCTGCTGCTGCTGCAGCGGCTGCTGCTGGTGGAGTGTCTGGATATGATTTTGGTGTAGATCCTAATTTGGATCCAGAACTTGCTCTCGCACTCCGAGTTTCAATGGAGGAAGAAAGGGCGAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGAAGCTGGTAACCAAGAGAAAGGAGAAAATCAGTCTACTTCTCAGGATGTTGCTATGGCTGAAAATGTCAATGCAGGAACTTCTGAGCCTGAAAGCAAAGCAACTGACCTAATG : GATGATGAGAATGCCTTGTTACAGCAAGCCCTTGCAATGTCGATGGATGACTCGTCCTCCAATGTTGCTACACGAGACACTGACATGTCAGAAGCGGCTTCTGAAGATCAAGACTTGGCACTTG : CTCTTCAACTGTCTGTGCAAGACAGTACAAATGATCAGTCAAATCCGACAGATATGAGTAAGCTGTTGGCAGATCAATCATTTGTGTCATCAATCCTTGCCTCA : CTTCCAGGTGTTGATCCAAACGATCCTTCTGTCAAAGATTTGCTTGCTTCCATGCAAGGGCAGTCCGAG : AAGAAGGATGAGGACAATGATAAGGAACAGAAAGAGGACAAGAAGTAAAGATGCGTACAACTATTTGCAGCTCAG : GTAGAGAAGTTCAGATGGTAATCAAGTATGCTGCTGCTGCTGAAATTGCTCATTGGAATGGGTCTTATTATGTCTGTGGGGTAGGGCTGTATCTCATTACTCTTGAGGGACTAATTGAATCGTCTTTAAAGTACTATTATAAGATTATGGAACTTTCAGTTAGATTCATTTGTGGTGGCTTCCAGATGATTTGTATTTCTCTCTCAAAAAATCACGTTAAGGACAGATCCTAGCAAGAAACAAGATGGTGTTTACCTTCAGCTACCCAGCGTTTTCTTTTGTGAAAAATTATGCGTCCCCAAAAAATCTATGAAGTGACAATTAATGTTTCAGTGTCAAAAACATTTAATTTTAGCCTCTTATTAACATCCTTTGTGATCACTGAAA</gDNA_template>
            <first_frame> P  L  R  E  L  S  C  I  F  F  G  L  *  F  F  L  L  K  A  P  T  P  S  A  S  K  L  K  F  L  P  I  Y  F  S  E  R  T  K  R  F  L  S  L  I  F  Q  L  L  D  F  S  S  I  V  N  H  G  A  R   : G  D  N  D  L  H  R  Q  F  G  V  D  E  K  R  *  L  L  A  Q  *  V  P  S  S  S  R  R  C  *  S  N  L  W  C  Q  N  P   : V  *  S  R  E  Y  S  W  N  F  D  D  G  W  *  R  G  S  S  V  S  H  S  D  Q  R  S  W  K  N  F  S  L  Y  A  R :   I  G  D  R  R  *  D  E  F  G  C  W  N  P  G  S  P  V  G  F  E  A  P  T  K  Q  E  A  T  T  K  D  Y  C  F  C  W  Q  :  P  C  *  I  *  Q  E  G  L  G  D  D  W  E  K  V  E  E  E  *  C  S  S  *  C  G  *  F  W  *  R  *  *  R  E  S  *  E  A  R  G  T  S  C  C  A  *  Y  Q  R  Q  *  S  H  H  S  Y  S  S  W  S  *  C  S  L  *  C  S  H  K  :  Y  S  Y  F  H  W  *  W  R  R  W  Q  W  I  C  C  C  C  C  S  G  C  C  W  W  S  V  W  I  *  F  W  C  R  S  *  F  G  S  R  T  C  S  R  T  P  S  F  N  G  G  R  K  G  E  A  G  S  S  C  K  E  G  C  R  R  S  W  *  P  R  E  R  R  K  S  V  Y  F  S  G  C  C  Y  G  *  K  C  Q  C  R  N  F  *  A  *  K  Q  S  N  *  P  N   : G  *  *  E  C  L  V  T  A  S  P  C  N  V  D  G  *  L  V  L  Q  C  C  Y  T  R  H  *  H  V  R  S  G  F  *  R  S  R  L  G  T  C :   S  S  T  V  C  A  R  Q  Y  K  *  S  V  K  S  D  R  Y  E  *  A  V  G  R  S  I  I  C  V  I  N  P  C  L   : T  S  R  C  *  S  K  R  S  F  C  Q  R  F  A  C  F  H  A  R  A  V  R   : E  E  G  *  G  Q  *  *  G  T  E  R  G  Q  E  V  K  M  R  T  T  I  C  S  S   : G  R  E  V  Q  M  V  I  K  Y  A  A  A  A  E  I  A  H  W  N  G  S  Y  Y  V  C  G  V  G  L  Y  L  I  T  L  E  G  L  I  E  S  S  L  K  Y  Y  Y  K  I  M  E  L  S  V  R  F  I  C  G  G  F  Q  M  I  C  I  S  L  S  K  N  H  V  K  D  R  S  *  Q  E  T  R  W  C  L  P  S  A  T  Q  R  F  L  L  *  K  I  M  R  P  Q  K  I  Y  E  V  T  I  N  V  S  V  S  K  T  F  N  F  S  L  L  L  T  S  F  V  I  T  E  </first_frame>
            <second_frame>  R  Y  A  N  Y  P  V  S  S  S  D  C  D  F  S  S  L  K  H  Q  L  P  P  Q  V  N  S  N  S  F  Q  F  I  F  Q  R  E  R  K  D  F  S  V  *  S  S  N  Y  W  I  F  L  Q  S  L  T  M  V  L  E  :  A  T  M  I  C  I  D  N  S  E  W  M  R  N  G  D  Y  S  P  N  R  F  Q  A  L  A  D  A  V  N  L  I  C  G  A  K  T  Q  :  S  N  P  E  N  T  V  G  I  L  T  M  A  G  K  G  V  R  V  L  V  T  P  T  S  D  L  G  K  I  L  A  C  M  H   : G  L  E  I  G  G  E  M  N  L  A  A  G  I  Q  V  A  Q  L  A  L  K  H  R  Q  N  K  K  Q  Q  Q  R  I  I  V  F  A  G  S :   P  V  K  Y  D  K  K  V  L  E  M  I  G  R  K  L  K  K  N  S  V  A  L  D  V  V  N  F  G  E  D  D  E  G  K  A  E  K  L  E  A  L  V  A  A  L  N  T  N  D  S  S  H  I  I  H  I  P  P  G  P  N  A  L  S  D  V  L  I  S :   T  P  I  F  T  G  D  G  E  G  G  S  G  F  A  A  A  A  A  A  A  A  A  G  G  V  S  G  Y  D  F  G  V  D  P  N  L  D  P  E  L  A  L  A  L  R  V  S  M  E  E  E  R  A  R  Q  E  A  A  A  K  K  A  A  E  E  A  G  N  Q  E  K  G  E  N  Q  S  T  S  Q  D  V  A  M  A  E  N  V  N  A  G  T  S  E  P  E  S  K  A  T  D  L  M  :  D  D  E  N  A  L  L  Q  Q  A  L  A  M  S  M  D  D  S  S  S  N  V  A  T  R  D  T  D  M  S  E  A  A  S  E  D  Q  D  L  A  L   : A  L  Q  L  S  V  Q  D  S  T  N  D  Q  S  N  P  T  D  M  S  K  L  L  A  D  Q  S  F  V  S  S  I  L  A  S  :  L  P  G  V  D  P  N  D  P  S  V  K  D  L  L  A  S  M  Q  G  Q  S  E  :  K  K  D  E  D  N  D  K  E  Q  K  E  D  K  K  *  R  C  V  Q  L  F  A  A  Q  :  V  E  K  F  R  W  *  S  S  M  L  L  L  L  K  L  L  I  G  M  G  L  I  M  S  V  G  *  G  C  I  S  L  L  L  R  D  *  L  N  R  L  *  S  T  I  I  R  L  W  N  F  Q  L  D  S  F  V  V  A  S  R  *  F  V  F  L  S  Q  K  I  T  L  R  T  D  P  S  K  K  Q  D  G  V  Y  L  Q  L  P  S  V  F  F  C  E  K  L  C  V  P  K  K  S  M  K  *  Q  L  M  F  Q  C  Q  K  H  L  I  L  A  S  Y  *  H  P  L  *  S  L  K </second_frame>
            <third_frame>   A  T  R  T  I  L  Y  L  L  R  I  V  I  F  P  P  *  S  T  N  S  L  R  K  *  T  Q  I  P  S  N  L  F  F  R  E  N  E  K  I  S  Q  F  N  L  P  I  I  G  F  F  F  N  R  *  P  W  C  S  R :   R  Q  *  S  A  S  T  I  R  S  G  *  E  T  V  I  T  R  P  I  G  S  K  L  *  Q  T  L  L  I  *  S  V  V  P  K  P  S :   L  I  P  R  I  Q  L  E  F  *  R  W  L  V  K  G  F  E  C  *  S  L  R  P  A  I  L  E  K  F  *  L  V  C  T  :  D  W  R  *  A  V  R  *  I  W  L  L  E  S  R  *  P  S  W  L  *  S  T  D  K  T  R  S  N  N  K  G  L  L  F  L  L  A   : A  L  L  N  M  T  R  R  S  W  R  *  L  G  E  S  *  R  R  I  V  *  L  L  M  W  L  I  L  V  K  M  M  K  G  K  L  R  S  *  R  H  *  L  L  R  L  I  P  T  T  V  V  T  S  F  I  F  L  L  V  L  M  L  S  L  M  F  S  *   : V  L  L  F  S  L  V  M  E  K  V  A  V  D  L  L  L  L  L  Q  R  L  L  L  V  E  C  L  D  M  I  L  V  *  I  L  I  W  I  Q  N  L  L  S  H  S  E  F  Q  W  R  K  K  G  R  G  R  K  Q  L  Q  R  R  L  Q  K  K  L  V  T  K  R  K  E  K  I  S  L  L  L  R  M  L  L  W  L  K  M  S  M  Q  E  L  L  S  L  K  A  K  Q  L  T  *  W :   M  M  R  M  P  C  Y  S  K  P  L  Q  C  R  W  M  T  R  P  P  M  L  L  H  E  T  L  T  C  Q  K  R  L  L  K  I  K  T  W  H  L  :  L  F  N  C  L  C  K  T  V  Q  M  I  S  Q  I  R  Q  I  *  V  S  C  W  Q  I  N  H  L  C  H  Q  S  L  P  H :   F  Q  V  L  I  Q  T  I  L  L  S  K  I  C  L  L  P  C  K  G  S  P  R :   R  R  M  R  T  M  I  R  N  R  K  R  T  R  S  K  D  A  Y  N  Y  L  Q  L  R :   *  R  S  S  D  G  N  Q  V  C  C  C  C  *  N  C  S  L  E  W  V  L  L  C  L  W  G  R  A  V  S  H  Y  S  *  G  T  N  *  I  V  F  K  V  L  L  *  D  Y  G  T  F  S  *  I  H  L  W  W  L  P  D  D  L  Y  F  S  L  K  K  S  R  *  G  Q  I  L  A  R  N  K  M  V  F  T  F  S  Y  P  A  F  S  F  V  K  N  Y  A  S  P  K  N  L  *  S  D  N  *  C  F  S  V  K  N  I  *  F  *  P  L  I  N  I  L  C  D  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127492" stop="127445"/>
                    <exon start="127349" stop="127236"/>
                    <exon start="127110" stop="127005"/>
                    <exon start="125313" stop="125199"/>
                    <exon start="125117" stop="124908"/>
                    <exon start="124781" stop="124472"/>
                    <exon start="124019" stop="123896"/>
                    <exon start="123037" stop="122934"/>
                    <exon start="122816" stop="122748"/>
                    <exon start="121879" stop="121832"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNYWIFLQSLTMVLEATMICIDNSEWMRNGDYSPNRFQALADAVNLICGAKTQSNPENTVGILTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKYDKKVLEMIGRKLKKNSVALDVVNFGEDDEGKAEKLEALVAALNTNDSSHIIHIPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEAGNQEKGENQSTSQDVAMAENVNAGTSEPESKATDLMDDENALLQQALAMSMDDSSSNVATRDTDMSEAASEDQDLALALQLSVQDSTNDQSNPTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQGQSEKKDEDNDKEQKEDKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N19.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121856" stop="121805"/>
                    <exon start="121703" stop="121471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTERGQEVKMRTTICSSGREVQMVIKYAAAAEIAHWNGSYYVCGVGLYLITLEGLIESSLKYYYKIMELSVRFICGGFQMICISLSKNHVKDRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 165 chains have been computed
$ 
$ memory statistics:
$ 517232 bytes spliced alignments in total
$ 104 spliced alignments have been stored
$ 4973 bytes was the average size of a spliced alignment
$ 26304 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1753 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 190 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:23:11
-->
