<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:27:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455755" ref_strand="+" ref_description="SGN-E455755 [cSTS-27-A8]">
      <seq>agcaaatagccaaatatcaccagtttttccccttgttgtttcttcgattcgtctctgtcgagcgattggatccctcaaagctaaaaccttcaaaaaatcttgctctcttagatggctaaccgagctcctgtcagaactaacaactcggccctcattgccatgatcgctgatgaggacacaattacaggatttttactggctggagttggcaatgtcgatttgaggaggaaaacaaattaccttattgtggattcaagtaagtttcaattttggaattaccagctcttcagtagttttgaggatctttcatttactttatgctgtagcttctactctccaccaaaatagcatggttagttattttccaaatcagcaaattctcttccaaccggttagtctctcttacctatgtggagaaaagagctttggatttgggggagggaatttaaatgatagtttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="2705" stop="427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2405" g_stop="2311" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2310" i_stop="1969" i_length="342">
            <donor d_prob="0.867" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1968" g_stop="1889" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="174" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1888" i_stop="1014" i_length="875">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1013" g_stop="724" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="464" r_length="290" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E455755" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2405" e_stop="2311"/>
          <exon e_start="1968" e_stop="1889"/>
          <exon e_start="1013" e_stop="724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATAGCCAAATATCATCAGTTTTTTTTCTTTCTTGTTTCTTCGATTCGTCTCTGTCGACCGATTGGATCCCTCAGAGCTAAAAACTTCGAAGTAAGCTTGAAAAAATTGTTGCAACTACAACTTCCGAAGCTTTTTTTTTTCATTCAATTCTGTTATTTCAAAGGATTTCGATCTGATTTATTCGATTATTGTTTAAGAACTTAAAATTCAGGAAAATCCTTACTGGGTTTTCATCAAACTTTGGAACTAGATATGGGTTTTGAAAATTTTCAAGGTTTTGAATATTTAAGCTATGTTAAATCTGATTTCTTTTTCTGCTGGTGGTTTGTTAATAGTTTAAGATTTGATTTGATATCTGAATCTGTCAATGTGTTCAAGATTCTTAATTTCTGAATCATGGATATTTTTATTATAGTTTATCTGTTGTTGCAGAAGCCTTGCTTTCTTAGATGGCTAACCGAGCTCCTGTCAGAACTAACAACTCAGCCCTCATTGCCATGATCGCTGATGAGGTGAAATTTTCAGCATTTTTGTTCTTTGGGTGTTGCTATGTATGCTTAGAATTGATAGTCTATGCTCTATTTGTATTGTATCAGACGATTCGTAATGGGATCGAACCAGGTTTTTCTTTGTTTTCACTATTTAGAGAGGACATGTACTTCGGTGCTGGAATCATTCACGTGTATGGATTTTCCAAGGAAACAGGTTCTGGGGTATCTAAGTCACATATAGTCAAGTAAACTATTCTAGCCTGGGAGTTACTCACTGTGCTATATATAAGGTGAGAAGTGAAAAATTGATGGACACACAAAACAGGAGTGTGATGACTGTAAAATGATGAAAGCTAATTAAGACTAAATAAATCATGACATCTCTCTTCCTGAAATAGAAACATTGATAGCTTATCATTGCGGATGAGCTGTTGGTTGTTATTTCTCTAGTGTGTCTCTCTCTAGATGCTTTGGGGTCATCAGTCATCTTTGAGCATAGATATTATACTCTTATCTGTCACATATTTGATAACCTTATTTGTCTTGCACGAACTAATTAGAAGACGTTTGGACGAGTTATTATAATTGATGTGAGTTTACAGTTGATGTGACTGATGGAGCACTGGTTTTAGTTGGGACGTAATCATGTATATGTTTTGCATCATATGTACGATCAGAAATCTGTGGAAACGGGATAGCAATTATATATCTCATCTATTGTTTGATTACGTTTTGGTATGCAACTTTTTAAATTGGTATACTAATTATCCAGTGTTCTTTGAATCTACCCACTTACTTTCATGGGACTTTTATGATGAATATCTTGTTAGTCTACATACACGTGGTAGATGATATATAGACATACTGATGCTGATGAAAATAACTTGTTTGTATAGGACACAATTACTGGATTTTTACTGGCTGGAGTTGGCAATGTTGATTTGAGGAGGAAAACAAATTACCTTATTGTGGATTCAAGTAAGTTCCAATTTTGGAATTACCAGTTCTCCAGTA-TTTTGAGGATCTTTCATTTACTTTCTGCTGTAGTTTATACTCTCCACCAAAATAGAATGGTTAGTTATTTTCCAAATTAATAAATTCTCTTCCAAATGGCTAGTTTCTTTTACCAATGTGGGCAAAGGAGCTTGAAATTTGGGGGAGGGAGTTTAGATGTTAAGTTTTTTTT</genome_strand>
        <mrna_strand>AGCAAATAGCCAAATATCACCAG-TTTTTCCCCTTGTTGTTTCTTCGATTCGTCTCTGTCGAGCGATTGGATCCCTCAAAGCTAAAACCTTCAAA......................................................................................................................................................................................................................................................................................................................................................AAATCTTGCTCTCTTAGATGGCTAACCGAGCTCCTGTCAGAACTAACAACTCGGCCCTCATTGCCATGATCGCTGATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAATTACAGGATTTTTACTGGCTGGAGTTGGCAATGTCGATTTGAGGAGGAAAACAAATTACCTTATTGTGGATTCAAGTAAGTTTCAATTTTGGAATTACCAGCTCTTCAGTAGTTTTGAGGATCTTTCATTTACTTTATGCTGTAGCTTCTACTCTCCACCAAAATAGCATGGTTAGTTATTTTCCAAATCAGCAAATTCTCTTCCAACCGGTTAGTCTCTCTTACCTATGTGGAGAAAAGAGCTTTGGATTTGGGGGAGGGAATTTAAATGAT-AGTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720367" ref_strand="+" ref_description="SGN-E720367 [FC10CE04]">
      <seq>gggcgattggcggcaaatcggccgaattggaaaaccaccattcatttgttgattgatgatgttgatgtgcaaaggggtatggccaagcagctcatccgttgttctgttgcagacaccaaatggacacaaatccttcaaaacccaagctagcttttctagctaccctcttgccagcaaagttatggttagaaatctatcatactccactgatgaaagttgtctggagaaaatattttcaaattttggtcatgttgctgaagttaagattgtgaaggatgaagtgactaaaagatcaaagggatatgcttttattcagtacacttctcaagaaaatgccatgcttgctcttgatagcatggatcacaagtacatcaatggcagggttatatttgtggaacttgcaaagcctacaaagaaagactttggcagatacccgagaagttgtggaccacctgtggagagattaccatctgaaaatgaagttccagacctaaaagaaaactgctaaggtaatgtttacgctagtgttagagtggcaatcattgataggtgcatgacagttccacaagtcatcattcttgaaactactgtgatgcagctttggttcgacttgataaaacttctattgcgtaaaatttcactcttaggtcactcctacaggttacaggactagtttacttgttctgtcatcgcattctgtgttttgcatgtaaacttcacacacatatatattgtgtttgttctattaggcatggcgcgttgcatgtcagtccaggtcaattacttcatactagaagaggctaagtgtacttccggtcatctttcaaaatctgtacttagaatcatgtatattaaatcgcaagacttgtgctttctcaacttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="2774" stop="6955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3079" g_stop="3238" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="191" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3239" i_stop="5775" i_length="2537">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.017" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5776" g_stop="5844" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="260" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5845" i_stop="5946" i_length="102">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5947" g_stop="6053" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="367" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6054" i_stop="6135" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6136" g_stop="6655" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="887" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E720367" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3079" e_stop="3238"/>
          <exon e_start="5776" e_stop="5844"/>
          <exon e_start="5947" e_stop="6053"/>
          <exon e_start="6136" e_stop="6655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCACCATTCATTTGTTGATTGATGATGTTGATGTGCAAAGGGGTATGGCCAAGCAGCTCATCCGTTGTTCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAAGCTAGCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAAGTAAGCAATTTACTCCCTCTTCCTTATATTTAACATTTAATATCAACAACTGTACTTTATCCCAAATGATAGGAGATAATCTACATATTTGTTTTACTAGGTTAAGTTAACTGGATGAATTTTATTCAATATATGAGCTAACTTAACTTCAAAAACTAGTTAATGAAAAGACTTTAACAGGATGGACCTGACTCTCATATATGACACCTGTGTTTTTTTTTTTTTGGGTTTCCATGTTCGGTAGCCACATTGGAGCCCGACTAAATTCACACACATGTCTTTTTTTTTCTTTTTTTGGGTTTCCCATCCGGTGTCCGGCACCCACATTGGAGCCCGAGTAAATTCGGATTTGCGCCGGAAAGTCCCACGTTGGGGTAAAACGCTCCCTAACAAAGGCGACTCCGTACCCAAGGGGCTTGAACCCGAGACCTCTTGGTTAAGGATGAATGAGTACTTACCGCTCCACCACAACACTTGTTGGTGACACCTGTGTCTAACTCAACCCCAAAAGCTAGCTAACGAGAGGACTACTGCGATTGCTCAACTCTATATAACCATACCACCAGTTCATTCTCCGACAAATGTGAGACTCTAACCCACTCTAACATTTTACTCTCTGTTGGCCCAGATTTACTTCCCTGCACAATGTTGTTCCTACTGGAAAAAGAGAAGGTGCTTGTTAAACTAGAGAACACATCTGAAAGATGACATTAGCTTCGTACTGGTAGCTAGCATCAGATTGAAAGTTTACAGCTTGAATCAATAATACGGTGTCTACTATCTATGTGTAGTGTGGATGATAGTTTTTGAACTTGTCTTCGTTATATGTTTCATCCATGTCCTATAAAAGCTAAACTTTTAAGACTTTTTGAAGCTTGGATACAACATCTGTTGGTCATAGCTGAAAAACTCTATTGACTTTGTAGTATCTTTTCCAAGAAACGGTGGGCGGAACTTAAATCAAAGAGAGAATTAAGTTTGTTTAGGATCTCTATTGGTGGAATTTGTTGTCGTCTGGGTACTGCTTGACACTAGTAATGTACAACCCACATTGCTTGCTTGTTATTCTGATCAAATAGTGATGTAGTAACTAGTGATAAGCTATGTTGCTTGAACTCTTCAAAAATGTTGACAGCTGCGTGTCCGATTCTCCAAAAATAGTGTATTTTTGAAGAATCCGACACGGATGTTGCATCAAAAGCAAAGAGTTCCGGAAACTTAGGTGATAAGCCTCATAAAATTGTATGCTCCTTTATACATTATCTTGACTCTGCATTATTGTGATAATACTAACTAATAAACCTCTTAGGAGTTTATATTTATTTATTTTTTTGAAAATAGTAATGTTAGGAGTTTATATTTCTTTATGTCATATCTTGTCTCTGCATCCTGGTACTAGTAAAAACTAGACATTGCAACATTGTATATGTTGATTGGCCAGATGTATTTGGTAAGACCATCGATCTATCGTTGTAATGATTCAGGATTTTGAGGTTTTACTGCCTATGAAGTGGTGGCATTTTTCTGTTTCACATAGATGATAAAAGCTAGTGATGCTCTTCAATTATGGTGGTGGTAGAATGTTAATTTTTATCAGCTGCTTTAAACTTCATGATTTCAAGTCTACAATTATGCTGCTTCCTGTTGAAGAAGTTGCTCGAAGACGCTAGATCTAGACATTTACGTGGTTCAAACCGTGCTTCCGGCTGAATAGAATTCAGATGTTTGGTCCGAGTAGTTATGATATTTGATGAAAAGTAAACACTTCATGTTATTGGGTAATATCCCACTTCTTGAGCTTAAAGGGCATGAAATTAAAAAGGGGCTACAGGCTTGTAGTGATTCAGCTAGTCATTATTTCAAATATACAGCACCTGGCTATACTTCCCGCTATAGTTGGCAAAGAAGTAAAATAGTGATATTAGAAAGCAATTCCTATGTAAAATGCATTCTGACTAACCTTGACATTCCAAGGTAGTAAGAAGAGTACTGTTAACTGACTACTGAAAGCAGTCACTGGAGATTTTTGCTTGTAAAAAATCAGAAAAAAAACGAGGAAAAATAGAAGAACGAATGAGGTTATGTAGAAGGAGATAAGTATCTCCATGTAATGCTGTTACTTTCCCTTTAGGAACTATGTGTTCAGTATCATTTTAGCGAGAAAATGTTGACTTCTTGTATTGTAAACTTGAAGGTTTTCTATTTACTAATATACATATACTGGAAACTTACTTAGTGCTGCTCAATGAAGAGTCCAGAATTTTCCTCTTTGATGCCTCTAAATGATAGATTCCATATTTAACTAAGTTAAAATCCTTCCTTAAAGTATTAAGCTATCATTGCACTAATTATTGTTCTCCATTGACCAAATTGTAGATGTAATGAATGTCATGTTAAGATTTTTTTTCTCTTTAACCCTTATGCTACAAGTTCAGAATTCACTTTCTGTCTTAGATATATCGATCACATGCTTTTCATTCAACGGTTGTGGTTCTCTCCTAAAGTTCCAAAATTTGTGTCTTATTTTTGAACCATAGATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAGGTATGTACCGTTGCTTGAAGATAATTTTTCTTATCTATTCTACTCTTTCTTGTAGTTGAGATTGTGACCTGTATTTTTTAATGTATCTACATCCCTTACCAGTTAAGATTGTGAAGGATGAAGTGACTAAGAGATCAAAGGGATATGCTTTTATTCAGTACACTTCTCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAGGTTATACTCTATAAATTTGTTTTGGATTTTTAATTCCCTTCACAGTATGTCTTCTTCGTCACGTTCTCTCTTCCCTTGTCAGTACATCAATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTACAAAGAAAGACTTTGGCAGATACCCGAGAAGTTGTGGACCACCTGTGGAGAGATTACCATCTGAAAATGAAGTTCCAGACCTAAAAGAAAACTGCTAAGGTAATGTTTACGCTAGTGTTAGAGTGGCAATCATTGATAGGTGCATGACAGTTCCACAAGTCATCATTCTTGAAACTACTGTGATGCAGCTTTGGTTCGACTTGATAAAACTTCTATTGCGTAAAATTTCACTCTTAGGTCACTCCTACAGGTTACAGGACTAGTTTACTTGTTCTGTCATCGCATTCTGTGTTTTGCATGTAAACTTCACACACATATATATTGTGTTTGTTCTATTAGGCATGGCGCGTTGCATGTCAGTCCAGGTCAATTACTTCATACTAGAAGAGGCTAAGTGTACTTCCGGTCATCTTTCAAAATCTGTACTTAGAATCATGTATATTAAATCGCAAGACTTGTGCTTTCTCAACTTGATGT</genome_strand>
        <mrna_strand>AAACCACCATTCATTTGTTGATTGATGATGTTGATGTGCAAAGGGGTATGGCCAAGCAGCTCATCCGTTGTTCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAAGCTAGCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAG......................................................................................................TTAAGATTGTGAAGGATGAAGTGACTAAAAGATCAAAGGGATATGCTTTTATTCAGTACACTTCTCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAG..................................................................................TACATCAATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTACAAAGAAAGACTTTGGCAGATACCCGAGAAGTTGTGGACCACCTGTGGAGAGATTACCATCTGAAAATGAAGTTCCAGACCTAAAAGAAAACTGCTAAGGTAATGTTTACGCTAGTGTTAGAGTGGCAATCATTGATAGGTGCATGACAGTTCCACAAGTCATCATTCTTGAAACTACTGTGATGCAGCTTTGGTTCGACTTGATAAAACTTCTATTGCGTAAAATTTCACTCTTAGGTCACTCCTACAGGTTACAGGACTAGTTTACTTGTTCTGTCATCGCATTCTGTGTTTTGCATGTAAACTTCACACACATATATATTGTGTTTGTTCTATTAGGCATGGCGCGTTGCATGTCAGTCCAGGTCAATTACTTCATACTAGAAGAGGCTAAGTGTACTTCCGGTCATCTTTCAAAATCTGTACTTAGAATCATGTATATTAAATCGCAAGACTTGTGCTTTCTCAACTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710207" ref_strand="+" ref_description="SGN-E710207 [FA54CF03]">
      <seq>gattgatgatgttgatgtgcaaaggggtatggccaagcagctcatccgttgttctgttgcagacaccaaatggacacaaatccttcaaaacccaagctagcttttctagctaccctcttgccagcaaagttatggttagaaatctatcatactccactgatgaaagttgtctggagaaaatattttcaaattttggtcatgttgctgaagttaagattgtgaaggatgaagtgactaagagatcaaagggatatgcttttattcagtacacttctcaagaaaatgccatgcttgctcttgatagcatggatcacaagtacatcaatggcagggttatatttgtggaacttgcaaagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="2798" stop="6478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3098" g_stop="3238" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3239" i_stop="5775" i_length="2537">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.017" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5776" g_stop="5844" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="210" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5845" i_stop="5946" i_length="102">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5947" g_stop="6053" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="317" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6054" i_stop="6135" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6136" g_stop="6178" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="360" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E710207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3098" e_stop="3238"/>
          <exon e_start="5776" e_stop="5844"/>
          <exon e_start="5947" e_stop="6053"/>
          <exon e_start="6136" e_stop="6178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATGATGTTGATGTGCAAAGGGGTATGGCCAAGCAGCTCATCCGTTGTTCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAAGCTAGCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAAGTAAGCAATTTACTCCCTCTTCCTTATATTTAACATTTAATATCAACAACTGTACTTTATCCCAAATGATAGGAGATAATCTACATATTTGTTTTACTAGGTTAAGTTAACTGGATGAATTTTATTCAATATATGAGCTAACTTAACTTCAAAAACTAGTTAATGAAAAGACTTTAACAGGATGGACCTGACTCTCATATATGACACCTGTGTTTTTTTTTTTTTGGGTTTCCATGTTCGGTAGCCACATTGGAGCCCGACTAAATTCACACACATGTCTTTTTTTTTCTTTTTTTGGGTTTCCCATCCGGTGTCCGGCACCCACATTGGAGCCCGAGTAAATTCGGATTTGCGCCGGAAAGTCCCACGTTGGGGTAAAACGCTCCCTAACAAAGGCGACTCCGTACCCAAGGGGCTTGAACCCGAGACCTCTTGGTTAAGGATGAATGAGTACTTACCGCTCCACCACAACACTTGTTGGTGACACCTGTGTCTAACTCAACCCCAAAAGCTAGCTAACGAGAGGACTACTGCGATTGCTCAACTCTATATAACCATACCACCAGTTCATTCTCCGACAAATGTGAGACTCTAACCCACTCTAACATTTTACTCTCTGTTGGCCCAGATTTACTTCCCTGCACAATGTTGTTCCTACTGGAAAAAGAGAAGGTGCTTGTTAAACTAGAGAACACATCTGAAAGATGACATTAGCTTCGTACTGGTAGCTAGCATCAGATTGAAAGTTTACAGCTTGAATCAATAATACGGTGTCTACTATCTATGTGTAGTGTGGATGATAGTTTTTGAACTTGTCTTCGTTATATGTTTCATCCATGTCCTATAAAAGCTAAACTTTTAAGACTTTTTGAAGCTTGGATACAACATCTGTTGGTCATAGCTGAAAAACTCTATTGACTTTGTAGTATCTTTTCCAAGAAACGGTGGGCGGAACTTAAATCAAAGAGAGAATTAAGTTTGTTTAGGATCTCTATTGGTGGAATTTGTTGTCGTCTGGGTACTGCTTGACACTAGTAATGTACAACCCACATTGCTTGCTTGTTATTCTGATCAAATAGTGATGTAGTAACTAGTGATAAGCTATGTTGCTTGAACTCTTCAAAAATGTTGACAGCTGCGTGTCCGATTCTCCAAAAATAGTGTATTTTTGAAGAATCCGACACGGATGTTGCATCAAAAGCAAAGAGTTCCGGAAACTTAGGTGATAAGCCTCATAAAATTGTATGCTCCTTTATACATTATCTTGACTCTGCATTATTGTGATAATACTAACTAATAAACCTCTTAGGAGTTTATATTTATTTATTTTTTTGAAAATAGTAATGTTAGGAGTTTATATTTCTTTATGTCATATCTTGTCTCTGCATCCTGGTACTAGTAAAAACTAGACATTGCAACATTGTATATGTTGATTGGCCAGATGTATTTGGTAAGACCATCGATCTATCGTTGTAATGATTCAGGATTTTGAGGTTTTACTGCCTATGAAGTGGTGGCATTTTTCTGTTTCACATAGATGATAAAAGCTAGTGATGCTCTTCAATTATGGTGGTGGTAGAATGTTAATTTTTATCAGCTGCTTTAAACTTCATGATTTCAAGTCTACAATTATGCTGCTTCCTGTTGAAGAAGTTGCTCGAAGACGCTAGATCTAGACATTTACGTGGTTCAAACCGTGCTTCCGGCTGAATAGAATTCAGATGTTTGGTCCGAGTAGTTATGATATTTGATGAAAAGTAAACACTTCATGTTATTGGGTAATATCCCACTTCTTGAGCTTAAAGGGCATGAAATTAAAAAGGGGCTACAGGCTTGTAGTGATTCAGCTAGTCATTATTTCAAATATACAGCACCTGGCTATACTTCCCGCTATAGTTGGCAAAGAAGTAAAATAGTGATATTAGAAAGCAATTCCTATGTAAAATGCATTCTGACTAACCTTGACATTCCAAGGTAGTAAGAAGAGTACTGTTAACTGACTACTGAAAGCAGTCACTGGAGATTTTTGCTTGTAAAAAATCAGAAAAAAAACGAGGAAAAATAGAAGAACGAATGAGGTTATGTAGAAGGAGATAAGTATCTCCATGTAATGCTGTTACTTTCCCTTTAGGAACTATGTGTTCAGTATCATTTTAGCGAGAAAATGTTGACTTCTTGTATTGTAAACTTGAAGGTTTTCTATTTACTAATATACATATACTGGAAACTTACTTAGTGCTGCTCAATGAAGAGTCCAGAATTTTCCTCTTTGATGCCTCTAAATGATAGATTCCATATTTAACTAAGTTAAAATCCTTCCTTAAAGTATTAAGCTATCATTGCACTAATTATTGTTCTCCATTGACCAAATTGTAGATGTAATGAATGTCATGTTAAGATTTTTTTTCTCTTTAACCCTTATGCTACAAGTTCAGAATTCACTTTCTGTCTTAGATATATCGATCACATGCTTTTCATTCAACGGTTGTGGTTCTCTCCTAAAGTTCCAAAATTTGTGTCTTATTTTTGAACCATAGATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAGGTATGTACCGTTGCTTGAAGATAATTTTTCTTATCTATTCTACTCTTTCTTGTAGTTGAGATTGTGACCTGTATTTTTTAATGTATCTACATCCCTTACCAGTTAAGATTGTGAAGGATGAAGTGACTAAGAGATCAAAGGGATATGCTTTTATTCAGTACACTTCTCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAGGTTATACTCTATAAATTTGTTTTGGATTTTTAATTCCCTTCACAGTATGTCTTCTTCGTCACGTTCTCTCTTCCCTTGTCAGTACATCAATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTA</genome_strand>
        <mrna_strand>GATTGATGATGTTGATGTGCAAAGGGGTATGGCCAAGCAGCTCATCCGTTGTTCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAAGCTAGCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAG......................................................................................................TTAAGATTGTGAAGGATGAAGTGACTAAGAGATCAAAGGGATATGCTTTTATTCAGTACACTTCTCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAG..................................................................................TACATCAATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278455" ref_strand="-" ref_description="SGN-E278455 [cLEL-2-I3](-)">
      <seq>gcacgagggccaagcagctcatccgttgatctgttgcagacaccaaatggacacaaatccttcaaaacccaacctcccttttctagctaccctcttgccagcaaagttatggttagaaatctatcatactccactgatgaaagttgtctggagaaaatattttcaaattttggtcatgttgctgaagttaatattgtgaaggatgaagtgactaagagatcaaagggatatgcttgtattcagtacacttatcaagaaaatgccatgcttgctcttgatagcatggatcacaaggttatactctataaattagttatggatttttaattcccttcacagtatgtcttcttcgtcacgttctctcttaccttgtcagtacatcaatggacaggttatatttgtggaacttgcacagcctacaaagaaagactttggcagatacccgagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="2826" stop="6509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3121" g_stop="3238" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3239" i_stop="5775" i_length="2537">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.017" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5776" g_stop="5844" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="187" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5845" i_stop="5946" i_length="102">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5947" g_stop="6209" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="450" r_length="263" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E278455" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278455" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3121" e_stop="3238"/>
          <exon e_start="5776" e_stop="5844"/>
          <exon e_start="5947" e_stop="6209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTATGGCCAAGCAGCTCATCCGTTGTTCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAAGCTAGCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAAGTAAGCAATTTACTCCCTCTTCCTTATATTTAACATTTAATATCAACAACTGTACTTTATCCCAAATGATAGGAGATAATCTACATATTTGTTTTACTAGGTTAAGTTAACTGGATGAATTTTATTCAATATATGAGCTAACTTAACTTCAAAAACTAGTTAATGAAAAGACTTTAACAGGATGGACCTGACTCTCATATATGACACCTGTGTTTTTTTTTTTTTGGGTTTCCATGTTCGGTAGCCACATTGGAGCCCGACTAAATTCACACACATGTCTTTTTTTTTCTTTTTTTGGGTTTCCCATCCGGTGTCCGGCACCCACATTGGAGCCCGAGTAAATTCGGATTTGCGCCGGAAAGTCCCACGTTGGGGTAAAACGCTCCCTAACAAAGGCGACTCCGTACCCAAGGGGCTTGAACCCGAGACCTCTTGGTTAAGGATGAATGAGTACTTACCGCTCCACCACAACACTTGTTGGTGACACCTGTGTCTAACTCAACCCCAAAAGCTAGCTAACGAGAGGACTACTGCGATTGCTCAACTCTATATAACCATACCACCAGTTCATTCTCCGACAAATGTGAGACTCTAACCCACTCTAACATTTTACTCTCTGTTGGCCCAGATTTACTTCCCTGCACAATGTTGTTCCTACTGGAAAAAGAGAAGGTGCTTGTTAAACTAGAGAACACATCTGAAAGATGACATTAGCTTCGTACTGGTAGCTAGCATCAGATTGAAAGTTTACAGCTTGAATCAATAATACGGTGTCTACTATCTATGTGTAGTGTGGATGATAGTTTTTGAACTTGTCTTCGTTATATGTTTCATCCATGTCCTATAAAAGCTAAACTTTTAAGACTTTTTGAAGCTTGGATACAACATCTGTTGGTCATAGCTGAAAAACTCTATTGACTTTGTAGTATCTTTTCCAAGAAACGGTGGGCGGAACTTAAATCAAAGAGAGAATTAAGTTTGTTTAGGATCTCTATTGGTGGAATTTGTTGTCGTCTGGGTACTGCTTGACACTAGTAATGTACAACCCACATTGCTTGCTTGTTATTCTGATCAAATAGTGATGTAGTAACTAGTGATAAGCTATGTTGCTTGAACTCTTCAAAAATGTTGACAGCTGCGTGTCCGATTCTCCAAAAATAGTGTATTTTTGAAGAATCCGACACGGATGTTGCATCAAAAGCAAAGAGTTCCGGAAACTTAGGTGATAAGCCTCATAAAATTGTATGCTCCTTTATACATTATCTTGACTCTGCATTATTGTGATAATACTAACTAATAAACCTCTTAGGAGTTTATATTTATTTATTTTTTTGAAAATAGTAATGTTAGGAGTTTATATTTCTTTATGTCATATCTTGTCTCTGCATCCTGGTACTAGTAAAAACTAGACATTGCAACATTGTATATGTTGATTGGCCAGATGTATTTGGTAAGACCATCGATCTATCGTTGTAATGATTCAGGATTTTGAGGTTTTACTGCCTATGAAGTGGTGGCATTTTTCTGTTTCACATAGATGATAAAAGCTAGTGATGCTCTTCAATTATGGTGGTGGTAGAATGTTAATTTTTATCAGCTGCTTTAAACTTCATGATTTCAAGTCTACAATTATGCTGCTTCCTGTTGAAGAAGTTGCTCGAAGACGCTAGATCTAGACATTTACGTGGTTCAAACCGTGCTTCCGGCTGAATAGAATTCAGATGTTTGGTCCGAGTAGTTATGATATTTGATGAAAAGTAAACACTTCATGTTATTGGGTAATATCCCACTTCTTGAGCTTAAAGGGCATGAAATTAAAAAGGGGCTACAGGCTTGTAGTGATTCAGCTAGTCATTATTTCAAATATACAGCACCTGGCTATACTTCCCGCTATAGTTGGCAAAGAAGTAAAATAGTGATATTAGAAAGCAATTCCTATGTAAAATGCATTCTGACTAACCTTGACATTCCAAGGTAGTAAGAAGAGTACTGTTAACTGACTACTGAAAGCAGTCACTGGAGATTTTTGCTTGTAAAAAATCAGAAAAAAAACGAGGAAAAATAGAAGAACGAATGAGGTTATGTAGAAGGAGATAAGTATCTCCATGTAATGCTGTTACTTTCCCTTTAGGAACTATGTGTTCAGTATCATTTTAGCGAGAAAATGTTGACTTCTTGTATTGTAAACTTGAAGGTTTTCTATTTACTAATATACATATACTGGAAACTTACTTAGTGCTGCTCAATGAAGAGTCCAGAATTTTCCTCTTTGATGCCTCTAAATGATAGATTCCATATTTAACTAAGTTAAAATCCTTCCTTAAAGTATTAAGCTATCATTGCACTAATTATTGTTCTCCATTGACCAAATTGTAGATGTAATGAATGTCATGTTAAGATTTTTTTTCTCTTTAACCCTTATGCTACAAGTTCAGAATTCACTTTCTGTCTTAGATATATCGATCACATGCTTTTCATTCAACGGTTGTGGTTCTCTCCTAAAGTTCCAAAATTTGTGTCTTATTTTTGAACCATAGATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAGGTATGTACCGTTGCTTGAAGATAATTTTTCTTATCTATTCTACTCTTTCTTGTAGTTGAGATTGTGACCTGTATTTTTTAATGTATCTACATCCCTTACCAGTTAAGATTGTGAAGGATGAAGTGACTAAGAGATCAAAGGGATATGCTTTTATTCAGTACACTTCTCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAGGTTATACTCTATAAATTTGTTTTGGATTTTTAATTCCCTTCACAGTATGTCTTCTTCGTCACGTTCTCTCTTCCCTTGTCAGTACATCAATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTACAAAGAAAGACTTTGGCAGATACCCGAGAAG</genome_strand>
        <mrna_strand>GCACGAGGGCCAAGCAGCTCATCCGTTGATCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAACCTCCCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAG......................................................................................................TTAATATTGTGAAGGATGAAGTGACTAAGAGATCAAAGGGATATGCTTGTATTCAGTACACTTATCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAGGTTATACTCTATAAATTAGTTATGGATTTTTAATTCCCTTCACAGTATGTCTTCTTCGTCACGTTCTCTCTTACCTTGTCAGTACATCAATGGACAGGTTATATTTGTGGAACTTGCACAGCCTACAAAGAAAGACTTTGGCAGATACCCGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346991" ref_strand="+" ref_description="SGN-E346991 [cTOF-25-O7]">
      <seq>gcatcagattgaaagtttacagcttgaatcaataatacggtgtctactatctatgtgtagtgtggatgatagtttttgaacttgtcttcgttatatgtttcatccatgtcctataaaagctaaacttttaagactttttgaagcttggatacaacatctgttggtcatagctgaaaaactctattgactttgtagtatcttttccaagaaacggtgggcggaacttaaatcaaagagagaattaagtttgtttaggatctctattggtggaatttgttgtcgtctgggtactgcttgacactagtaatgtacaacccacattgcttgcttgttattctgatcaaatagtgatgtagtaactagtgataagctatgttgcttgaactcttcaaaaatgttgacagctgcgtgtccgattctccaaaaatagtgtatttttgaagaatccgaccggatgttgcatcaaaagcaaagaattccggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="3670" stop="4757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3970" g_stop="4457" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E346991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3970" e_stop="4457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCAGATTGAAAGTTTACAGCTTGAATCAATAATACGGTGTCTACTATCTATGTGTAGTGTGGATGATAGTTTTTGAACTTGTCTTCGTTATATGTTTCATCCATGTCCTATAAAAGCTAAACTTTTAAGACTTTTTGAAGCTTGGATACAACATCTGTTGGTCATAGCTGAAAAACTCTATTGACTTTGTAGTATCTTTTCCAAGAAACGGTGGGCGGAACTTAAATCAAAGAGAGAATTAAGTTTGTTTAGGATCTCTATTGGTGGAATTTGTTGTCGTCTGGGTACTGCTTGACACTAGTAATGTACAACCCACATTGCTTGCTTGTTATTCTGATCAAATAGTGATGTAGTAACTAGTGATAAGCTATGTTGCTTGAACTCTTCAAAAATGTTGACAGCTGCGTGTCCGATTCTCCAAAAATAGTGTATTTTTGAAGAATCCGACACGGATGTTGCATCAAAAGCAAAGAGTTCCGGAAACT</genome_strand>
        <mrna_strand>GCATCAGATTGAAAGTTTACAGCTTGAATCAATAATACGGTGTCTACTATCTATGTGTAGTGTGGATGATAGTTTTTGAACTTGTCTTCGTTATATGTTTCATCCATGTCCTATAAAAGCTAAACTTTTAAGACTTTTTGAAGCTTGGATACAACATCTGTTGGTCATAGCTGAAAAACTCTATTGACTTTGTAGTATCTTTTCCAAGAAACGGTGGGCGGAACTTAAATCAAAGAGAGAATTAAGTTTGTTTAGGATCTCTATTGGTGGAATTTGTTGTCGTCTGGGTACTGCTTGACACTAGTAATGTACAACCCACATTGCTTGCTTGTTATTCTGATCAAATAGTGATGTAGTAACTAGTGATAAGCTATGTTGCTTGAACTCTTCAAAAATGTTGACAGCTGCGTGTCCGATTCTCCAAAAATAGTGTATTTTTGAAGAATCCGAC-CGGATGTTGCATCAAAAGCAAAGAATTCCGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278296" ref_strand="-" ref_description="SGN-E278296 [cLEL-2-I3]">
      <seq>atggcagggttacatatgtggaacttccaaagcctacaaagaaagactttgtcagatacccgagaagttgtggaccacctgtgtagagattaccatctgaaaatgaagttccagacctaaaagaaaactgctaaggtaatgtttacgctagtgttagagtggcaatcattgataggtgcattacagttccacaagtcatcattcttgaaactactgtgatgcagctttggttcgacttgataaaacttctattgcgtaaaatttcactcttaggtcactcctacaggttacaggactagtttacttgttctgtcatcgcattctgtgatagggatgtaaacttcacacacatatacctcgtgtttgttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="5843" stop="6813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6143" g_stop="6517" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="388"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E278296" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278296" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6143" e_stop="6517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTACAAAGAAAGACTTTGGCAGATACCCGAGAAGTTGTGGACCACCTGTGGAGAGATTACCATCTGAAAATGAAGTTCCAGACCTAAAAGAAAACTGCTAAGGTAATGTTTACGCTAGTGTTAGAGTGGCAATCATTGATAGGTGCATGACAGTTCCACAAGTCATCATTCTTGAAACTACTGTGATGCAGCTTTGGTTCGACTTGATAAAACTTCTATTGCGTAAAATTTCACTCTTAGGTCACTCCTACAGGTTACAGGACTAGTTTACTTGTTCTGTCATCGCATTCTGTGTTTTGCATGTAAACTTCACACACATATATATTGTGTTTGTTCTATTAG</genome_strand>
        <mrna_strand>ATGGCAGGGTTACATATGTGGAACTTCCAAAGCCTACAAAGAAAGACTTTGTCAGATACCCGAGAAGTTGTGGACCACCTGTGTAGAGATTACCATCTGAAAATGAAGTTCCAGACCTAAAAGAAAACTGCTAAGGTAATGTTTACGCTAGTGTTAGAGTGGCAATCATTGATAGGTGCATTACAGTTCCACAAGTCATCATTCTTGAAACTACTGTGATGCAGCTTTGGTTCGACTTGATAAAACTTCTATTGCGTAAAATTTCACTCTTAGGTCACTCCTACAGGTTACAGGACTAGTTTACTTGTTCTGTCATCGCATTCTGTGATAGGGATGTAAACTTCACACACATATACCTCGTGTTTGTTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722147" ref_strand="+" ref_description="SGN-E722147 [FC16BE03]">
      <seq>aatttaagcgttacatttgtatttggagaagagagagagaagagagaagggcgataatactatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacaagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggacagaggatattcaagaacggatcttggtctgagctacgtgaaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10234" stop="14710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10534" g_stop="10785" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="366" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="462" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="505" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14053" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="661" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14337" g_stop="14410" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="735" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E722147" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10534" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14053"/>
          <exon e_start="14337" e_stop="14410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAGCGTTACAATTGTATTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGA</genome_strand>
        <mrna_strand>AATTTAAGCGTTACATTTGTATTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACAAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG...........................................................................................................................................................................................................................................................................................GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705671" ref_strand="+" ref_description="SGN-E705671 [FA27DC05]">
      <seq>atttggagaagagagagagaagagagaagggcgataatactatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggacagaggatattcaagaacggatcttggtctgagctacgtgaaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtggaagagaagatacaaacagtagcaaagcatcgaaatatttgggtggagaatgctgatagattggttgctggtttccttgagatgtttgaagaggggtgccacaaaatgggaactgtcataagagaccgaattcaagaacagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10254" stop="17492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10554" g_stop="10785" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="346" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="442" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="485" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14053" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="641" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14337" g_stop="14417" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="722" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.264" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16908" g_stop="17006" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="821" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17157" g_stop="17192" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="857" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E705671" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10554" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14053"/>
          <exon e_start="14337" e_stop="14417"/>
          <exon e_start="16908" e_stop="17006"/>
          <exon e_start="17157" e_stop="17192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTGGAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAACCTAAAGAGTACATAGAGAAACATAGTTACAGGAACCCCCAAAAAAACATAAACCAATCACTTAACTAGTTACAATGACCCAATAATGTCAACTACATAATCTCTATATCTTCTGCTAGGCCTTCCTTACACCGAAAATTTGAAACAAAAATATATAAGAATATATTTTTAGTCTTCCGTTGAGTCGGCTACATCTTCAAAACACCACAGTCCACACGTTCCTTTTCTTTCCTATTGTCCACCAGATGCACATAGGAATAATTCTCCACCATCTCTTCTGCCTTACAAAATTGTCTGGACCATTCCAGCATGCTAGCAACTCAGCAGTTATCTTAATTATCCATTTGAGCCTTTCTATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTACATGCTAGCAACTCAGCAGTTTTCTTAATTATCCATTTGAGCCTTTCCATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTTGCAATGGATAAGTAGGTGGCTACTTGTTTCATTCATTATCCATCTGAACCCTTTCATACTCGGTAAGAGCTGCTTCAGAGTAGTGGTAACTTTGCAATGGATAAATAATAGATGGCTCTTTATTTCATTTTCTCTCCACATAGAAGGCATTTAGAACACATAGAAATATTGTGCAAATGACACTTTGAGCAATGAAGGGTAGCACGGGAAGCAATATGATGGTATATAAGGTAAGGTTGAATTCGAGGATACAATTGAATTGCCTCTCTACCTCACAAAGGTAGGCAGTAGGGGTAAGGTTTGCATAGACCCTACCCTATCCAGACCCCACTGGTGGGACTATACTGGTATATTGTTGTTGTTGTGGTGGTGAATATTATAAAGTGGAGGTGACTTGGTTTAACACATCCTACAATGGAATATCAACATTATATGTCAATGTTAGGTGTTCTAATCTTTTATCATCGCTGTGCAACTGACATGTTCTTGTAGGTTCTCGTATTATTAGATCCTTTATATTTAAAGCTGACAACATTTACATAAGGTCAAGTTTGTCCCCAAGGAGATGAATCATTTGTATTATGTCATGCATGCATAGGAACTTTTGGATACAAAACAATAGCTAACCACATTTTCATATCAGCTATATTAGCCTGGATCGATACTTGTGCATTTAGTTGCTATTTCTTATGAGTAGGGTGATGTCCAACCACTTTTAGAAGCATAAGTAGATATCTTTGCCGACCGAATTGTTTGTTTTAGTAGATGGATGGTTCTTTTGTTTAATTCAAATCTGGTGTGGTTTCATTTGTTGAGAAGCCTGGAGCTTTTAATTAGTATAAGTAATTTTCTCAGCCTATAATGAAGTGTTCATGAAATTTTGTGGTTTGCTTCCCCATTATGATGTGGCTCAGTTGATAGTAAACAAATGTATTTTTTTTAATAGGGATAGTTTATATCTTTATTTCTATCATTGAGCTTGCATCCGATTATGGTTAATGTTGTGTTGCAATGTGTACTACCTTCCGGGTAAATTTTCCTCTTACTATTCTACTAATTACTACTCCCTCTATGTGACACTCTTTCCTTTTTAGTTTGTCCAAAAAGAATGACATCTTCCCAAATTTAGTAAAATTTAACTTCAAACTTTCCATTTTATCCCTAGCGAAATGATTTATTGCCACGTAAATTTCTATAGGTTAAAATCTTCCTTTTAAAAAAAAATGAACTTGAAGCTTCCTTTTAGTCAAATGCCTTCACATAAATTGGAAGGAACTGCCAACGCAACCAAACCCCGTTCTTTTATATTATTTGTTGGAATAGATAGTAGATATATGATCGGATGCATAAGTTGGTAAGGGCTGTTTAGAGTTGGACATAAAATTACTAATTCAAATTGAAATGTACAATGATTGGGGAAATTGGAACGGGTGGAGTATTATTTCCGATTCGTTATAGTTTATCACCTTGTAGAATTTGGGTGGTGGAGATGGTGGGAGTCGCAATTATCTGGACTTTTGAAGAGTGAGCTGAAGTGCTAAACTATGTAGACGAAGCTACTTCTCATCTTATATGCTAGGTTTCTGAGTAAAGGAAGCTGTTTCTTCTCCATTGATTATTCTCACTATGTCTTTTGTACTCAGTGTTACCAAAAATAGAGCAGTATGTAGCAGTTCTGATAGCTTTTTCGTAATTTAATGAATTAAACATAAGACGGATGCTTGTCGTCATTGAAGAACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATGGTAAGATCTCTGTGCTGCTTTTCCCATCCCTCTCTTTTCCTCTTCTCTTATCTGGTGTTCAATCCCCTAGGGTTTTCCAGTAGCACCTCCCACACACGAATGAGAGTGGTTTATATTTGCACTTCTGATGACACATTGAAATTTCAACAGGGAACTGTCATAAGAGACCGAATTCAAGAACAGATG</genome_strand>
        <mrna_strand>ATTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG...........................................................................................................................................................................................................................................................................................GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGGTGCCACAAAATG......................................................................................................................................................GGAACTGTCATAAGAGACCGAATTCAAGAACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307324" ref_strand="+" ref_description="SGN-E307324 [cLEY-12-N5]">
      <seq>tttggagaagagagagagaagagagaagggcgataatactatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10255" stop="14308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10555" g_stop="10785" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="345" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="441" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="484" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14008" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="595" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E307324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10555" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTG</genome_strand>
        <mrna_strand>TTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331761" ref_strand="+" ref_description="SGN-E331761 [cTOD-7-C15]">
      <seq>gagaagagagagagaagagagaagggcgataatactatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10259" stop="14251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10559" g_stop="10785" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="341" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="437" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="480" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="13951" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="534" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E331761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10559" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="13951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACT</genome_strand>
        <mrna_strand>GAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298126" ref_strand="+" ref_description="SGN-E298126 [cLEW-9-E17]">
      <seq>agaagagagagagaagagagaagggcgataatactatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacagttgaagccgatcccaccgaattcaccgccaacagatcggccggctcgtatatacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctctaacaagctaagaaactattgcctaacgctcagctacttgttggatgctgcaatgatgaaatcactcacaaaatcaagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10260" stop="11514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10560" g_stop="10785" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11214" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="294" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E298126" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10560" e_stop="10785"/>
          <exon e_start="11147" e_stop="11214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAA</genome_strand>
        <mrna_strand>AGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACAGTTGAAGCCGATCCCACCGAATTCACCGCCAACAGATCGGCCGGCTCGTATATACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCTAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTACTTGTTGGATGCTGCAATGATGAAATCACTCACAAAATCAAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309630" ref_strand="+" ref_description="SGN-E309630 [cLEY-26-P11]">
      <seq>gagggagaagagagaagggccgataatacctatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10266" stop="14299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10566" g_stop="10785" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="336" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="432" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="475" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="13999" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="577" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E309630" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10566" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="13999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAAGAGAGAAGGG-CGATAATA-CTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATG</genome_strand>
        <mrna_strand>GAGGGAGAAGAGAGAAGGGCCGATAATACCTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745395" ref_strand="+" ref_description="SGN-E745395 [GI|47105683]">
      <seq>ggagagaagagagaagggcgataatactatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagagactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggacagaggatattcaagaacggatcttggtctgagctacgtgaaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtggaagagaagatacaaacagtagcaaagcatcgaaatatttgggtggagaatgctgatagattggttgctggtttccttgagatgtttgaagagggttgccacaaaatgggaactgtcataagagaccgaattcaagaacagatgaggaccaagagtataaaagggcttctatatgacaaagaagaggatgatgatgaatatgactactattacgggagcagtgacgatgatgaagaatactacgatggtgaagatgaagaatagggttgttcactttctcatgttatgtggtgatgtaaaatgtagtttatggatcaagttggatgaagatgtattatgtcctaacgtttggatgcgcgtgtgatatgcgtgttttattttggtagaatgtagtggcaattagttgtgttgtaaaccgtgatcaagcatagtcttgtaccataacgctgtcaatcagagtgatttgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10268" stop="17822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10567" g_stop="10785" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="333" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="429" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="472" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14053" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="628" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14337" g_stop="14417" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="709" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.264" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16908" g_stop="17006" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="808" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17157" g_stop="17506" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="1158" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1168" polyA_stop="1182"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E745395" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1158</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10567" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14053"/>
          <exon e_start="14337" e_stop="14417"/>
          <exon e_start="16908" e_stop="17006"/>
          <exon e_start="17157" e_stop="17506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTGGAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAACCTAAAGAGTACATAGAGAAACATAGTTACAGGAACCCCCAAAAAAACATAAACCAATCACTTAACTAGTTACAATGACCCAATAATGTCAACTACATAATCTCTATATCTTCTGCTAGGCCTTCCTTACACCGAAAATTTGAAACAAAAATATATAAGAATATATTTTTAGTCTTCCGTTGAGTCGGCTACATCTTCAAAACACCACAGTCCACACGTTCCTTTTCTTTCCTATTGTCCACCAGATGCACATAGGAATAATTCTCCACCATCTCTTCTGCCTTACAAAATTGTCTGGACCATTCCAGCATGCTAGCAACTCAGCAGTTATCTTAATTATCCATTTGAGCCTTTCTATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTACATGCTAGCAACTCAGCAGTTTTCTTAATTATCCATTTGAGCCTTTCCATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTTGCAATGGATAAGTAGGTGGCTACTTGTTTCATTCATTATCCATCTGAACCCTTTCATACTCGGTAAGAGCTGCTTCAGAGTAGTGGTAACTTTGCAATGGATAAATAATAGATGGCTCTTTATTTCATTTTCTCTCCACATAGAAGGCATTTAGAACACATAGAAATATTGTGCAAATGACACTTTGAGCAATGAAGGGTAGCACGGGAAGCAATATGATGGTATATAAGGTAAGGTTGAATTCGAGGATACAATTGAATTGCCTCTCTACCTCACAAAGGTAGGCAGTAGGGGTAAGGTTTGCATAGACCCTACCCTATCCAGACCCCACTGGTGGGACTATACTGGTATATTGTTGTTGTTGTGGTGGTGAATATTATAAAGTGGAGGTGACTTGGTTTAACACATCCTACAATGGAATATCAACATTATATGTCAATGTTAGGTGTTCTAATCTTTTATCATCGCTGTGCAACTGACATGTTCTTGTAGGTTCTCGTATTATTAGATCCTTTATATTTAAAGCTGACAACATTTACATAAGGTCAAGTTTGTCCCCAAGGAGATGAATCATTTGTATTATGTCATGCATGCATAGGAACTTTTGGATACAAAACAATAGCTAACCACATTTTCATATCAGCTATATTAGCCTGGATCGATACTTGTGCATTTAGTTGCTATTTCTTATGAGTAGGGTGATGTCCAACCACTTTTAGAAGCATAAGTAGATATCTTTGCCGACCGAATTGTTTGTTTTAGTAGATGGATGGTTCTTTTGTTTAATTCAAATCTGGTGTGGTTTCATTTGTTGAGAAGCCTGGAGCTTTTAATTAGTATAAGTAATTTTCTCAGCCTATAATGAAGTGTTCATGAAATTTTGTGGTTTGCTTCCCCATTATGATGTGGCTCAGTTGATAGTAAACAAATGTATTTTTTTTAATAGGGATAGTTTATATCTTTATTTCTATCATTGAGCTTGCATCCGATTATGGTTAATGTTGTGTTGCAATGTGTACTACCTTCCGGGTAAATTTTCCTCTTACTATTCTACTAATTACTACTCCCTCTATGTGACACTCTTTCCTTTTTAGTTTGTCCAAAAAGAATGACATCTTCCCAAATTTAGTAAAATTTAACTTCAAACTTTCCATTTTATCCCTAGCGAAATGATTTATTGCCACGTAAATTTCTATAGGTTAAAATCTTCCTTTTAAAAAAAAATGAACTTGAAGCTTCCTTTTAGTCAAATGCCTTCACATAAATTGGAAGGAACTGCCAACGCAACCAAACCCCGTTCTTTTATATTATTTGTTGGAATAGATAGTAGATATATGATCGGATGCATAAGTTGGTAAGGGCTGTTTAGAGTTGGACATAAAATTACTAATTCAAATTGAAATGTACAATGATTGGGGAAATTGGAACGGGTGGAGTATTATTTCCGATTCGTTATAGTTTATCACCTTGTAGAATTTGGGTGGTGGAGATGGTGGGAGTCGCAATTATCTGGACTTTTGAAGAGTGAGCTGAAGTGCTAAACTATGTAGACGAAGCTACTTCTCATCTTATATGCTAGGTTTCTGAGTAAAGGAAGCTGTTTCTTCTCCATTGATTATTCTCACTATGTCTTTTGTACTCAGTGTTACCAAAAATAGAGCAGTATGTAGCAGTTCTGATAGCTTTTTCGTAATTTAATGAATTAAACATAAGACGGATGCTTGTCGTCATTGAAGAACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATGGTAAGATCTCTGTGCTGCTTTTCCCATCCCTCTCTTTTCCTCTTCTCTTATCTGGTGTTCAATCCCCTAGGGTTTTCCAGTAGCACCTCCCACACACGAATGAGAGTGGTTTATATTTGCACTTCTGATGACACATTGAAATTTCAACAGGGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGTGACGATGATGAAGAATACTACGATGGTGAAGATGAAGAATAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGA</genome_strand>
        <mrna_strand>GGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAGACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG...........................................................................................................................................................................................................................................................................................GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATG......................................................................................................................................................GGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGTGACGATGATGAAGAATACTACGATGGTGAAGATGAAGAATAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703168" ref_strand="+" ref_description="SGN-E703168 [FA20DA05]">
      <seq>gaagagagaagggcgataatactatagtaatggagaatggaggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggaatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggacagaggatattcaagaacggatcttggtctgagctacgtgaaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtggaagagaagatacaaacagtagcaaagcatcgaaatatttgggtggagaatgctgatagattggttgctggtttccttgagatgtttgaagagggttgccacaaaatgggaactgtcataagagaccgaattccagaacagatgaggacccagagtataaaagggcttctatatgacaaagaagaggatgatgatgaatatgactactattacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10272" stop="17562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10572" g_stop="10785" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="328" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="424" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="467" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14053" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="623" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14337" g_stop="14417" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="704" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.264" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16908" g_stop="17006" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="803" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17157" g_stop="17262" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="909" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E703168" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10572" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14053"/>
          <exon e_start="14337" e_stop="14417"/>
          <exon e_start="16908" e_stop="17006"/>
          <exon e_start="17157" e_stop="17262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTGGAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAACCTAAAGAGTACATAGAGAAACATAGTTACAGGAACCCCCAAAAAAACATAAACCAATCACTTAACTAGTTACAATGACCCAATAATGTCAACTACATAATCTCTATATCTTCTGCTAGGCCTTCCTTACACCGAAAATTTGAAACAAAAATATATAAGAATATATTTTTAGTCTTCCGTTGAGTCGGCTACATCTTCAAAACACCACAGTCCACACGTTCCTTTTCTTTCCTATTGTCCACCAGATGCACATAGGAATAATTCTCCACCATCTCTTCTGCCTTACAAAATTGTCTGGACCATTCCAGCATGCTAGCAACTCAGCAGTTATCTTAATTATCCATTTGAGCCTTTCTATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTACATGCTAGCAACTCAGCAGTTTTCTTAATTATCCATTTGAGCCTTTCCATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTTGCAATGGATAAGTAGGTGGCTACTTGTTTCATTCATTATCCATCTGAACCCTTTCATACTCGGTAAGAGCTGCTTCAGAGTAGTGGTAACTTTGCAATGGATAAATAATAGATGGCTCTTTATTTCATTTTCTCTCCACATAGAAGGCATTTAGAACACATAGAAATATTGTGCAAATGACACTTTGAGCAATGAAGGGTAGCACGGGAAGCAATATGATGGTATATAAGGTAAGGTTGAATTCGAGGATACAATTGAATTGCCTCTCTACCTCACAAAGGTAGGCAGTAGGGGTAAGGTTTGCATAGACCCTACCCTATCCAGACCCCACTGGTGGGACTATACTGGTATATTGTTGTTGTTGTGGTGGTGAATATTATAAAGTGGAGGTGACTTGGTTTAACACATCCTACAATGGAATATCAACATTATATGTCAATGTTAGGTGTTCTAATCTTTTATCATCGCTGTGCAACTGACATGTTCTTGTAGGTTCTCGTATTATTAGATCCTTTATATTTAAAGCTGACAACATTTACATAAGGTCAAGTTTGTCCCCAAGGAGATGAATCATTTGTATTATGTCATGCATGCATAGGAACTTTTGGATACAAAACAATAGCTAACCACATTTTCATATCAGCTATATTAGCCTGGATCGATACTTGTGCATTTAGTTGCTATTTCTTATGAGTAGGGTGATGTCCAACCACTTTTAGAAGCATAAGTAGATATCTTTGCCGACCGAATTGTTTGTTTTAGTAGATGGATGGTTCTTTTGTTTAATTCAAATCTGGTGTGGTTTCATTTGTTGAGAAGCCTGGAGCTTTTAATTAGTATAAGTAATTTTCTCAGCCTATAATGAAGTGTTCATGAAATTTTGTGGTTTGCTTCCCCATTATGATGTGGCTCAGTTGATAGTAAACAAATGTATTTTTTTTAATAGGGATAGTTTATATCTTTATTTCTATCATTGAGCTTGCATCCGATTATGGTTAATGTTGTGTTGCAATGTGTACTACCTTCCGGGTAAATTTTCCTCTTACTATTCTACTAATTACTACTCCCTCTATGTGACACTCTTTCCTTTTTAGTTTGTCCAAAAAGAATGACATCTTCCCAAATTTAGTAAAATTTAACTTCAAACTTTCCATTTTATCCCTAGCGAAATGATTTATTGCCACGTAAATTTCTATAGGTTAAAATCTTCCTTTTAAAAAAAAATGAACTTGAAGCTTCCTTTTAGTCAAATGCCTTCACATAAATTGGAAGGAACTGCCAACGCAACCAAACCCCGTTCTTTTATATTATTTGTTGGAATAGATAGTAGATATATGATCGGATGCATAAGTTGGTAAGGGCTGTTTAGAGTTGGACATAAAATTACTAATTCAAATTGAAATGTACAATGATTGGGGAAATTGGAACGGGTGGAGTATTATTTCCGATTCGTTATAGTTTATCACCTTGTAGAATTTGGGTGGTGGAGATGGTGGGAGTCGCAATTATCTGGACTTTTGAAGAGTGAGCTGAAGTGCTAAACTATGTAGACGAAGCTACTTCTCATCTTATATGCTAGGTTTCTGAGTAAAGGAAGCTGTTTCTTCTCCATTGATTATTCTCACTATGTCTTTTGTACTCAGTGTTACCAAAAATAGAGCAGTATGTAGCAGTTCTGATAGCTTTTTCGTAATTTAATGAATTAAACATAAGACGGATGCTTGTCGTCATTGAAGAACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATGGTAAGATCTCTGTGCTGCTTTTCCCATCCCTCTCTTTTCCTCTTCTCTTATCTGGTGTTCAATCCCCTAGGGTTTTCCAGTAGCACCTCCCACACACGAATGAGAGTGGTTTATATTTGCACTTCTGATGACACATTGAAATTTCAACAGGGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACG</genome_strand>
        <mrna_strand>GAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG...........................................................................................................................................................................................................................................................................................GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATG......................................................................................................................................................GGAACTGTCATAAGAGACCGAATTCCAGAACAGATGAGGACCCAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365294" ref_strand="+" ref_description="SGN-E365294 [cLPT-2-A12]">
      <seq>ctcgtgccggagagaagggcgataatactatagtaatggagaatggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggcatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattcctgatgcgccttgggttgttaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10275" stop="14311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10576" g_stop="10785" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="217" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="331" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="427" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="470" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14011" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="584" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E365294" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10576" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGAC</genome_strand>
        <mrna_strand>AGAGAAGGGCGATAATACTATAGTAATGGAGAAT---GGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGCATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCTGATGCGCCTTGGGTTGTTACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446228" ref_strand="+" ref_description="SGN-E446228 [cSTA-20-K16]">
      <seq>ccgaaataatatagtaatggagaatggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccagctcgtatttacgccgacggcatctatgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaacgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgttaccccggagttcattgagaaacatcggattgactatgtggcccatgacgctcttccttatgcggatgcaagtggagctggaaatgacgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10293" stop="14300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10584" g_stop="10785" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="309" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="405" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="448" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14000" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="551" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E446228" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10584" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGC</genome_strand>
        <mrna_strand>CCGA-AATAATATAGTAATGGAGAAT---GGA-G-G-AGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCAGCTCGTATTTACGCCGACGGCATCTATGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAACGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTTACCCCGGAGTTCATTGAGAAACATCGGATTGACTATGTGGCCCATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGACGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366121" ref_strand="+" ref_description="SGN-E366121 [cLPT-15-H3]">
      <seq>gcgataatactatagtaatggagaatggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggcatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattcctgatgcgccttgggttgttaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10306" stop="13889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10584" g_stop="10785" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="313" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="409" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13589" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="438" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E366121" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10584" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATG</genome_strand>
        <mrna_strand>GCGATAATACTATAGTAATGGAGAATGGAGGAGG---AGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGCATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCTGATGCGCCTTGGGTTGTTACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364884" ref_strand="+" ref_description="SGN-E364884 [cLPT-4-P1]">
      <seq>gataatactatagtaatggagaatggaggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggcatctacgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattcctgatgcgccttgggttgttaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggacagaggatattcaagaacggatcttggtctgagctacgtgaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10306" stop="14358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10586" g_stop="10785" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="311" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="407" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13599" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="446" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13600" i_stop="13897" i_length="298">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="14053" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="602" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14337" g_stop="14341" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="607" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E364884" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10586" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13599"/>
          <exon e_start="13898" e_stop="14053"/>
          <exon e_start="14337" e_stop="14341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAA</genome_strand>
        <mrna_strand>GATAATACTATAGTAATGGAGAATGGAGGAGGAG---GAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGCATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCTGATGCGCCTTGGGTTGTTACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGA..........................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAA...........................................................................................................................................................................................................................................................................................GAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446445" ref_strand="+" ref_description="SGN-E446445 [cSTA-21-M10]">
      <seq>gaggggagaatggaggaggagaagatccacaattagaaccaccaccacagccgcagcgacggttgaagccgatcccaccgaatccaccgccaacagatcggccggctcgtatttacgccgacggcatctatgatctctttcacttcggacatgctcgcgccctcgaacaagctaagaaactattgcctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaacgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgttaccccggagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgacgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10306" stop="14249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10606" g_stop="10785" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11147" g_stop="11260" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="295" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="391" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="434" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13898" g_stop="13949" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="486" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E446445" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10606" e_stop="10785"/>
          <exon e_start="11147" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="13949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGAGGA-GGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTGTATGTTTTCTCCTATTTTCATCCGTCGTAATACTCTATATATGATTTTTAGAATCATTAATTGACTTTTATTGTGAAAATTTCATGCCTTTTATATTCTCTATTGTGATGCTGGATTTCTGAGTGATTGTGAGAGGGATCCAATGAGATATCTGCTTGATTTCTTCTCACGTAGGTAAGCAAGACTAGGTGAGAAGACTTATGTGTCGGTGAAAGAAGAAAACCAAATAGGTGTTTGTCTAAGTTGTTGTTTTTTATTCTTATTGGAATATTATTAGTTGTATGATTGTAGAGGCATGAAGAATTTGTGAAATTGAACATACTTTTACTTTAGACTGAATTATTCATTGCCTAAATGTAGATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTA</genome_strand>
        <mrna_strand>GAGGGGAGAATGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGCATCTATGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT.........................................................................................................................................................................................................................................................................................................................................................................ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAACGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTTACCCCGGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGACGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228147" ref_strand="+" ref_description="SGN-E228147 [cLED-2-N18]">
      <seq>cctaacgctcagcttcttgttggatgctgcaatgatgaaatcactcacaaattcaagggaaaaactgttatgaatgaaaaggagcgatatgaatctttgcgccactgcagatgggttgatgaagttattccagatgcgccttgggttgtaaccccagagttcattgagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggacagaggatattcaagaacggatcttggtctgagctacgtgaaggtattaacttcatcattgcctcttttaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtggaagagaagatacaaacagtagcaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="10851" stop="17229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11151" g_stop="11260" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13200" g_stop="13295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="206" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13561" g_stop="13599" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13600" i_stop="13897" i_length="298">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13898" g_stop="14053" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="401" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14054" i_stop="14308" i_length="255">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14309" g_stop="14417" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="510" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.264" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16908" g_stop="16929" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="532" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E228147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11151" e_stop="11260"/>
          <exon e_start="13200" e_stop="13295"/>
          <exon e_start="13561" e_stop="13599"/>
          <exon e_start="13898" e_stop="14053"/>
          <exon e_start="14309" e_stop="14417"/>
          <exon e_start="16908" e_stop="16929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGGTTGGTTTTATGGGGTTGTCAATTATGTTTTAAGTTTAATGTTTTTCCAGTCAGAGCATAATAAAATGATCTTTCTTCGTGAAATGATCTGAGTATATCTAATTGCCGGGGTTAGATTCATTCAGTTGTCTGATGTCTTCATAGTACATTTACAAATATATGAAGTTATGTTTTCATGTAGATGTTTCTTATATTGTGTTTATTGAGGGTAACTTTGATTTTTAAAATGATTGTAGTTGTTTGTTCGTTTTCCTTTCAGTTGTGAATGAGATGAATAGTTGAGGTAGTTATTTTGTATAAAAAATGGCTGTTGTTGTGACAAATAAGAGACACAAGGATGAGAGTAATATAGCATGTGTGAAGATCATCTTTTTATAAGATAATGAATTTCATAAGGCATCAAGAAGATGCAAAATTTACGGAAGGTAGAAAGTAAAAGACATTGTTAGCTATATTAAAAAGTAAAAGGGAGGCCATCGTGTTGGGATTACATTGCACACAAAATCATTAAATCTTTGGGGAATCACATCGATTCAAGATTCAACTTGGCTAGTTCAAACTCATATATTGATATATGTGTTGGAACCAGCCAAATTGAATCTCGAATGGATGTGATTCCCCAAAATTTTAATGATTTTGTGTGCAATGTAATCCCAAAACAATGGCCTCGCCTTCTGCTATGTAATATAGATAACAATTTAAATTGGGAAGTGTACCAACATTTAATTCTGGGAAGACAAATGGTTAGGGGGATCTACCCTAAAGAATGAATTTCCAAGCTTGTATCAGATAGCTCAGAACATAACTTTACCATCTCTCAGAATTGGCAAAATAACTGCTGGCAAATACAGTTCAGGAGGAATATTTAAGATTGGGAACTGCCTCACCTTATAGAGGTATGGCCTAAATTAGAACACTCTTGTCAAGTCATGTATTACTGACAACCTAAAATGGAAGGATGGTCCCTATTCAGTATCGGGAGGCTTTGCTCATCTATGCTCTCCTACAATGAGGTAATTGATAGATGGCTCTGGAAATTAAAGCTTCTCTCAAGATCATATGTTCTAGCTGGACAGCTTTACATGAAGCATGCCTTGCATAGGATAAACTCTACAGAAGGAAAATTCAGAGTCAGTAGATGCTTCATATGCCTAATCAAATTAGATCCCAATCGACTTCTCTTGCTTCACTTCACAATCATCACAGATATTTGGGGCATGTTTTTCTCTATTTTCGGTCTTAAAGCATAAAAGAGGCCTATGAACGCTGGTCTAAATCGAAAGTTGATTAGTCCATCGCAGATGATTCCTGCCTTATCTTTTGAGGACAGAAAAGAATTATAGATGTTTTTATGGGATTTCAACACCTACTTATTTTCTGAAGGTCTGTTATGGTTGTATAGTTTGCAGAATCTCTCCCCTGTAAATTGTCCTATTAATTTTTTGAACTTCATCAGCTCTTTAGCATTAGCTTAGGCTTTGTGGCCTATGGCTGATTATCTTTTGTGCTTCTGATCAATGTCAAACGGATTGGTAGAAGAAATGGTGAGAAAGACAGAGACAGAAAGGAACTCAAAATATTTTTGAAGACAAAAGCAGTTATATTTAGAAGATCAAGATGAATCGTCTTTCTTTGTGCTATTTTTGGTGTACGGGATCTTTTTGATCATATATGGGACTGGATAGATTTAATAGGTGGCTTGCAAGTGACTGTCACATCAGGCTTCCCTTTTTTTCTCTTTCTGAGTTGTACATACAGTTCTCAGCCCTTGCCAGGTGCTGACTTTAGTATCAGTACAAGCCTGTTACCTTCCTTTTGGAAAAAAAAATGCCGCTTATGATGGTTCTAATATTGTAGCTTCTAATGGTTGATATCTGCCTTTATCTTTAATTTGTATGGTGCATTTTCAAGTAGGTTAATTGTGTATGCATTGTTGCAGATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTGGAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAACCTAAAGAGTACATAGAGAAACATAGTTACAGGAACCCCCAAAAAAACATAAACCAATCACTTAACTAGTTACAATGACCCAATAATGTCAACTACATAATCTCTATATCTTCTGCTAGGCCTTCCTTACACCGAAAATTTGAAACAAAAATATATAAGAATATATTTTTAGTCTTCCGTTGAGTCGGCTACATCTTCAAAACACCACAGTCCACACGTTCCTTTTCTTTCCTATTGTCCACCAGATGCACATAGGAATAATTCTCCACCATCTCTTCTGCCTTACAAAATTGTCTGGACCATTCCAGCATGCTAGCAACTCAGCAGTTATCTTAATTATCCATTTGAGCCTTTCTATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTACATGCTAGCAACTCAGCAGTTTTCTTAATTATCCATTTGAGCCTTTCCATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTTGCAATGGATAAGTAGGTGGCTACTTGTTTCATTCATTATCCATCTGAACCCTTTCATACTCGGTAAGAGCTGCTTCAGAGTAGTGGTAACTTTGCAATGGATAAATAATAGATGGCTCTTTATTTCATTTTCTCTCCACATAGAAGGCATTTAGAACACATAGAAATATTGTGCAAATGACACTTTGAGCAATGAAGGGTAGCACGGGAAGCAATATGATGGTATATAAGGTAAGGTTGAATTCGAGGATACAATTGAATTGCCTCTCTACCTCACAAAGGTAGGCAGTAGGGGTAAGGTTTGCATAGACCCTACCCTATCCAGACCCCACTGGTGGGACTATACTGGTATATTGTTGTTGTTGTGGTGGTGAATATTATAAAGTGGAGGTGACTTGGTTTAACACATCCTACAATGGAATATCAACATTATATGTCAATGTTAGGTGTTCTAATCTTTTATCATCGCTGTGCAACTGACATGTTCTTGTAGGTTCTCGTATTATTAGATCCTTTATATTTAAAGCTGACAACATTTACATAAGGTCAAGTTTGTCCCCAAGGAGATGAATCATTTGTATTATGTCATGCATGCATAGGAACTTTTGGATACAAAACAATAGCTAACCACATTTTCATATCAGCTATATTAGCCTGGATCGATACTTGTGCATTTAGTTGCTATTTCTTATGAGTAGGGTGATGTCCAACCACTTTTAGAAGCATAAGTAGATATCTTTGCCGACCGAATTGTTTGTTTTAGTAGATGGATGGTTCTTTTGTTTAATTCAAATCTGGTGTGGTTTCATTTGTTGAGAAGCCTGGAGCTTTTAATTAGTATAAGTAATTTTCTCAGCCTATAATGAAGTGTTCATGAAATTTTGTGGTTTGCTTCCCCATTATGATGTGGCTCAGTTGATAGTAAACAAATGTATTTTTTTTAATAGGGATAGTTTATATCTTTATTTCTATCATTGAGCTTGCATCCGATTATGGTTAATGTTGTGTTGCAATGTGTACTACCTTCCGGGTAAATTTTCCTCTTACTATTCTACTAATTACTACTCCCTCTATGTGACACTCTTTCCTTTTTAGTTTGTCCAAAAAGAATGACATCTTCCCAAATTTAGTAAAATTTAACTTCAAACTTTCCATTTTATCCCTAGCGAAATGATTTATTGCCACGTAAATTTCTATAGGTTAAAATCTTCCTTTTAAAAAAAAATGAACTTGAAGCTTCCTTTTAGTCAAATGCCTTCACATAAATTGGAAGGAACTGCCAACGCAACCAAACCCCGTTCTTTTATATTATTTGTTGGAATAGATAGTAGATATATGATCGGATGCATAAGTTGGTAAGGGCTGTTTAGAGTTGGACATAAAATTACTAATTCAAATTGAAATGTACAATGATTGGGGAAATTGGAACGGGTGGAGTATTATTTCCGATTCGTTATAGTTTATCACCTTGTAGAATTTGGGTGGTGGAGATGGTGGGAGTCGCAATTATCTGGACTTTTGAAGAGTGAGCTGAAGTGCTAAACTATGTAGACGAAGCTACTTCTCATCTTATATGCTAGGTTTCTGAGTAAAGGAAGCTGTTTCTTCTCCATTGATTATTCTCACTATGTCTTTTGTACTCAGTGTTACCAAAAATAGAGCAGTATGTAGCAGTTCTGATAGCTTTTTCGTAATTTAATGAATTAAACATAAGACGGATGCTTGTCGTCATTGAAGAACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATC</genome_strand>
        <mrna_strand>CCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGA..........................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG...............................................................................................................................................................................................................................................................GTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAACAGTAGCAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240591" ref_strand="+" ref_description="SGN-E240591 [cLED-21-D5]">
      <seq>ttgatgaatttattccagatgcgccttgggttgtaaccccagagnncccggagaaacatcggattgactatgtggcacatgacgctcttccttatgcggatgcaagtggagctggaaatgatgtttacgagtatgttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggacagaggatattcaagaacggatcttggtctgagctacgtgaaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtggaagagaagatacaaacagtagcaaagcatcgaaatatttgggtggagaatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="12905" stop="17254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13205" g_stop="13295" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265">
            <donor d_prob="0.719" d_score="0.90"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13561" g_stop="13603" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="134" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13898" g_stop="14053" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="290" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14337" g_stop="14417" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="371" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.264" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16908" g_stop="16954" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="418" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E240591" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13205" e_stop="13295"/>
          <exon e_start="13561" e_stop="13603"/>
          <exon e_start="13898" e_stop="14053"/>
          <exon e_start="14337" e_stop="14417"/>
          <exon e_start="16908" e_stop="16954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCGTAAGGCAAAACGGCCCACAAAATTTTTACTTCTGTTGATTTGCATAAGCGTCCCTGTTTCCTTGGAACTATATTTGGACCAGCTTTTGATATGCCTTATCTGCTTATTCATTATTTTACTTTAAGATGGATTTAGCTTTACATAACTAATTTAAGGTCTTCCCCCGTTGTGTGATTTTGTTTTATTTGTTCGTATTGTTGTTTCATTCTGGGTTCCGAGATATTTTTTCTTTTAATTTTTCGTCTTCTTGTCTGTACACGTCAGTTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTATGTAAGTCCAAAATGAACTTCAGTTTATCATACGCGACTTTTACCTTGTTCATATGATGTTTCTGTTAAACAATTTAGTTTGTGTCTGTACAATGTTTTTGTGTGCATAAACCGGGGTGATTTGCAAATTGTTCATCTTTTTAATATGCTGTATGAAAGTCGGTCTTTATTTACTTATTTTGCTCATTGTTGATCCGTTTTAATCAGTGTAAGATATCTAGTTTGATATTCACTCTTTAATGCCTACTTTAATGCCATTGTGTAATGTGAATATTTTTAAAACCTGTGTTATTAGGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTGGAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAACCTAAAGAGTACATAGAGAAACATAGTTACAGGAACCCCCAAAAAAACATAAACCAATCACTTAACTAGTTACAATGACCCAATAATGTCAACTACATAATCTCTATATCTTCTGCTAGGCCTTCCTTACACCGAAAATTTGAAACAAAAATATATAAGAATATATTTTTAGTCTTCCGTTGAGTCGGCTACATCTTCAAAACACCACAGTCCACACGTTCCTTTTCTTTCCTATTGTCCACCAGATGCACATAGGAATAATTCTCCACCATCTCTTCTGCCTTACAAAATTGTCTGGACCATTCCAGCATGCTAGCAACTCAGCAGTTATCTTAATTATCCATTTGAGCCTTTCTATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTACATGCTAGCAACTCAGCAGTTTTCTTAATTATCCATTTGAGCCTTTCCATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTTGCAATGGATAAGTAGGTGGCTACTTGTTTCATTCATTATCCATCTGAACCCTTTCATACTCGGTAAGAGCTGCTTCAGAGTAGTGGTAACTTTGCAATGGATAAATAATAGATGGCTCTTTATTTCATTTTCTCTCCACATAGAAGGCATTTAGAACACATAGAAATATTGTGCAAATGACACTTTGAGCAATGAAGGGTAGCACGGGAAGCAATATGATGGTATATAAGGTAAGGTTGAATTCGAGGATACAATTGAATTGCCTCTCTACCTCACAAAGGTAGGCAGTAGGGGTAAGGTTTGCATAGACCCTACCCTATCCAGACCCCACTGGTGGGACTATACTGGTATATTGTTGTTGTTGTGGTGGTGAATATTATAAAGTGGAGGTGACTTGGTTTAACACATCCTACAATGGAATATCAACATTATATGTCAATGTTAGGTGTTCTAATCTTTTATCATCGCTGTGCAACTGACATGTTCTTGTAGGTTCTCGTATTATTAGATCCTTTATATTTAAAGCTGACAACATTTACATAAGGTCAAGTTTGTCCCCAAGGAGATGAATCATTTGTATTATGTCATGCATGCATAGGAACTTTTGGATACAAAACAATAGCTAACCACATTTTCATATCAGCTATATTAGCCTGGATCGATACTTGTGCATTTAGTTGCTATTTCTTATGAGTAGGGTGATGTCCAACCACTTTTAGAAGCATAAGTAGATATCTTTGCCGACCGAATTGTTTGTTTTAGTAGATGGATGGTTCTTTTGTTTAATTCAAATCTGGTGTGGTTTCATTTGTTGAGAAGCCTGGAGCTTTTAATTAGTATAAGTAATTTTCTCAGCCTATAATGAAGTGTTCATGAAATTTTGTGGTTTGCTTCCCCATTATGATGTGGCTCAGTTGATAGTAAACAAATGTATTTTTTTTAATAGGGATAGTTTATATCTTTATTTCTATCATTGAGCTTGCATCCGATTATGGTTAATGTTGTGTTGCAATGTGTACTACCTTCCGGGTAAATTTTCCTCTTACTATTCTACTAATTACTACTCCCTCTATGTGACACTCTTTCCTTTTTAGTTTGTCCAAAAAGAATGACATCTTCCCAAATTTAGTAAAATTTAACTTCAAACTTTCCATTTTATCCCTAGCGAAATGATTTATTGCCACGTAAATTTCTATAGGTTAAAATCTTCCTTTTAAAAAAAAATGAACTTGAAGCTTCCTTTTAGTCAAATGCCTTCACATAAATTGGAAGGAACTGCCAACGCAACCAAACCCCGTTCTTTTATATTATTTGTTGGAATAGATAGTAGATATATGATCGGATGCATAAGTTGGTAAGGGCTGTTTAGAGTTGGACATAAAATTACTAATTCAAATTGAAATGTACAATGATTGGGGAAATTGGAACGGGTGGAGTATTATTTCCGATTCGTTATAGTTTATCACCTTGTAGAATTTGGGTGGTGGAGATGGTGGGAGTCGCAATTATCTGGACTTTTGAAGAGTGAGCTGAAGTGCTAAACTATGTAGACGAAGCTACTTCTCATCTTATATGCTAGGTTTCTGAGTAAAGGAAGCTGTTTCTTCTCCATTGATTATTCTCACTATGTCTTTTGTACTCAGTGTTACCAAAAATAGAGCAGTATGTAGCAGTTCTGATAGCTTTTTCGTAATTTAATGAATTAAACATAAGACGGATGCTTGTCGTCATTGAAGAACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGA</genome_strand>
        <mrna_strand>TTGATGAATTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGNNCCCGGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC.........................................................................................................................................................................................................................................................................TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT......................................................................................................................................................................................................................................................................................................GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG...........................................................................................................................................................................................................................................................................................GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595213" ref_strand="+" ref_description="SGN-E595213 [38481]">
      <seq>gttaagtccattggtaagttcttggagaccaagcggactgatggaatatctacttcagatttaataatgaggattgtaaaagactacaatgaatatgtgatgcgcaatttggaccgaggatattcaagaacagatcttggtctgagctatgtgaaggtatactctttagtgttttgattgggtgatgtaataataccttacctttctcaggaaagaagttttcttattttgcaaatgcaatgaaaagaataagtgtgctaattgaatgatgtagactttctgctagcattagctttattcctcactaataatagtagaatcaatggcgcagagtcaaaggttacattttgtttcattatttgctttgctaggtattaatttcattattgcttctttcaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtggaagagaaggtatattcttaattatttgactgcttttcagttctctatttcgaatacaagcttgtcagaagtgtctccaatctccatagaatatgtggttttgaatatagtttggcaattatctgaaaaaaagcaaggaaaaaggatattgagatctatgtcctctatcgtttgtgcaattatttttttaaagaaagggtaccatattttatataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="13598" stop="14927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13898" g_stop="14176" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14177" i_stop="14226" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14227" g_stop="14627" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="688" r_length="409" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E595213" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13898" e_stop="14176"/>
          <exon e_start="14227" e_stop="14627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAG-T--T----TT---TTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTG-GAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAAC</genome_strand>
        <mrna_strand>GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACCGAGGATATTCAAGAACAGATCTTGGTCTGAGCTATGTGAAGGTATACTCTTTAGTGTTTTGATTGGGTGATGTAATAATACCTTACCTTTCTCAGGAAAGAAGTTTTCTTATTTTGCAAATGCAATGAAAAGAATAAGTGTGCTAATTGAATGATGTAGACTTT..................................................CTGCTAGCATTAGCTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGGTTACATTTTGTTTCATTATTTGCTTTGCTAGGTATTAATTTCATTATTGCTTCTTTCAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAATTATTTGACTGCTTTTCAGTTCTCTATTTCGAATACAAGCTTGTCAGAAGTGTCTCCAATCTCCATAGAATATGTGG-TTTTGAATATAGTTTGGCAATTATCTGAAAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCCTCTATCGTTTGTGC-AATTATTTTTTTAAAGA-AAGGGTACCATATTTTATATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616798" ref_strand="-" ref_description="SGN-E616798 [90269]">
      <seq>cgcaatttggaccgaggatattcaagaacagatcttggtctgagctatgtgaaggaaaaaaggctgagagtgaacaggggtttgaaaaagttgcatgagagagtaaagaaacaacaagagaaagtggaagagaagatacaaacagtagcaaagcatcgaaatatttgggtggagaatgctgatagattggttgctggtttccttgagatgtttgaagagggttgccacaaaatgggaactgtcataagagaccgaattcaagagcagatgaggaccaagagtataaaagggcttctatatgacaaagaagaggatgatgatgaatatgactactattacgggagcagcgacgaagatgaagaatactacgatggtgaagatgaagactagggttgcttactttctcatgttatgtggtgatgtaaaatttagtttatggatcaagttggatgaagatgtattatgtctaacggttggatgcgcgtgttttcttttgttagaatgtagtggcaattagttgtgttgtaaaccgtgatcaagcatagtcttgtaccataacgctgtcaatcagagtgatttgtctaaatatgagatgaataatcatatgttcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="13700" stop="17824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14000" g_stop="14053" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14337" g_stop="14417" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="135" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.264" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16908" g_stop="17006" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="234" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17157" g_stop="17548" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="614" r_length="380" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E616798" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616798" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14000" e_stop="14053"/>
          <exon e_start="14337" e_stop="14417"/>
          <exon e_start="16908" e_stop="17006"/>
          <exon e_start="17157" e_stop="17548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTTCTGCTACGCGACAAAAAAAATAAATTATGTAGACTTTCTGCTAGCATTAGTTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTGGAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAACCTAAAGAGTACATAGAGAAACATAGTTACAGGAACCCCCAAAAAAACATAAACCAATCACTTAACTAGTTACAATGACCCAATAATGTCAACTACATAATCTCTATATCTTCTGCTAGGCCTTCCTTACACCGAAAATTTGAAACAAAAATATATAAGAATATATTTTTAGTCTTCCGTTGAGTCGGCTACATCTTCAAAACACCACAGTCCACACGTTCCTTTTCTTTCCTATTGTCCACCAGATGCACATAGGAATAATTCTCCACCATCTCTTCTGCCTTACAAAATTGTCTGGACCATTCCAGCATGCTAGCAACTCAGCAGTTATCTTAATTATCCATTTGAGCCTTTCTATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTACATGCTAGCAACTCAGCAGTTTTCTTAATTATCCATTTGAGCCTTTCCATACTCAGTAAGAGCTGTACAGATTACAGGTAACTTTGCAATGGATAAGTAGGTGGCTACTTGTTTCATTCATTATCCATCTGAACCCTTTCATACTCGGTAAGAGCTGCTTCAGAGTAGTGGTAACTTTGCAATGGATAAATAATAGATGGCTCTTTATTTCATTTTCTCTCCACATAGAAGGCATTTAGAACACATAGAAATATTGTGCAAATGACACTTTGAGCAATGAAGGGTAGCACGGGAAGCAATATGATGGTATATAAGGTAAGGTTGAATTCGAGGATACAATTGAATTGCCTCTCTACCTCACAAAGGTAGGCAGTAGGGGTAAGGTTTGCATAGACCCTACCCTATCCAGACCCCACTGGTGGGACTATACTGGTATATTGTTGTTGTTGTGGTGGTGAATATTATAAAGTGGAGGTGACTTGGTTTAACACATCCTACAATGGAATATCAACATTATATGTCAATGTTAGGTGTTCTAATCTTTTATCATCGCTGTGCAACTGACATGTTCTTGTAGGTTCTCGTATTATTAGATCCTTTATATTTAAAGCTGACAACATTTACATAAGGTCAAGTTTGTCCCCAAGGAGATGAATCATTTGTATTATGTCATGCATGCATAGGAACTTTTGGATACAAAACAATAGCTAACCACATTTTCATATCAGCTATATTAGCCTGGATCGATACTTGTGCATTTAGTTGCTATTTCTTATGAGTAGGGTGATGTCCAACCACTTTTAGAAGCATAAGTAGATATCTTTGCCGACCGAATTGTTTGTTTTAGTAGATGGATGGTTCTTTTGTTTAATTCAAATCTGGTGTGGTTTCATTTGTTGAGAAGCCTGGAGCTTTTAATTAGTATAAGTAATTTTCTCAGCCTATAATGAAGTGTTCATGAAATTTTGTGGTTTGCTTCCCCATTATGATGTGGCTCAGTTGATAGTAAACAAATGTATTTTTTTTAATAGGGATAGTTTATATCTTTATTTCTATCATTGAGCTTGCATCCGATTATGGTTAATGTTGTGTTGCAATGTGTACTACCTTCCGGGTAAATTTTCCTCTTACTATTCTACTAATTACTACTCCCTCTATGTGACACTCTTTCCTTTTTAGTTTGTCCAAAAAGAATGACATCTTCCCAAATTTAGTAAAATTTAACTTCAAACTTTCCATTTTATCCCTAGCGAAATGATTTATTGCCACGTAAATTTCTATAGGTTAAAATCTTCCTTTTAAAAAAAAATGAACTTGAAGCTTCCTTTTAGTCAAATGCCTTCACATAAATTGGAAGGAACTGCCAACGCAACCAAACCCCGTTCTTTTATATTATTTGTTGGAATAGATAGTAGATATATGATCGGATGCATAAGTTGGTAAGGGCTGTTTAGAGTTGGACATAAAATTACTAATTCAAATTGAAATGTACAATGATTGGGGAAATTGGAACGGGTGGAGTATTATTTCCGATTCGTTATAGTTTATCACCTTGTAGAATTTGGGTGGTGGAGATGGTGGGAGTCGCAATTATCTGGACTTTTGAAGAGTGAGCTGAAGTGCTAAACTATGTAGACGAAGCTACTTCTCATCTTATATGCTAGGTTTCTGAGTAAAGGAAGCTGTTTCTTCTCCATTGATTATTCTCACTATGTCTTTTGTACTCAGTGTTACCAAAAATAGAGCAGTATGTAGCAGTTCTGATAGCTTTTTCGTAATTTAATGAATTAAACATAAGACGGATGCTTGTCGTCATTGAAGAACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATGGTAAGATCTCTGTGCTGCTTTTCCCATCCCTCTCTTTTCCTCTTCTCTTATCTGGTGTTCAATCCCCTAGGGTTTTCCAGTAGCACCTCCCACACACGAATGAGAGTGGTTTATATTTGCACTTCTGATGACACATTGAAATTTCAACAGGGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGTGACGATGATGAAGAATACTACGATGGTGAAGATGAAGAATAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGATTTGTCTAAATATGTTCTTGAAAATTCTATTTTATTTT</genome_strand>
        <mrna_strand>CGCAATTTGGACCGAGGATATTCAAGAACAGATCTTGGTCTGAGCTATGTGAAG...........................................................................................................................................................................................................................................................................................GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATG......................................................................................................................................................GGAACTGTCATAAGAGACCGAATTCAAGAGCAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGCGACGAAGATGAAGAATACTACGATGGTGAAGATGAAGACTAGGGTTGCTTACTTTCTCATGTTATGTGGTGATGTAAAATTTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGT-CTAACGGTTGGAT--GC---------GCGTGTTTTCTTTTGTTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGATTTGTCTAAATATGAGATGAATAATCATATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436332" ref_strand="-" ref_description="SGN-E436332 [STM-62-H24]">
      <seq>tttctcagtaaaagctatttctagtcttctagcacaaaacacgttaaaaagactagttgttgcagatacaaacagtagcaaagcatcgaaatatttgggtggagaatgctgatagattggttgctggtttccttgagatgtttgaagagggttgccacaaaatgggaactgtcataagagaccgaattcaagagcagatgaggaccaagagtataaaagggcttctatatgacaaagaagaggatgatgatgaatatgactactattacgggagcagcgacgaagatgaagaatactacgatggtgaagatgaagactagggttgcttactttctcatgttatgtggtgatgtaaaatttagtttatggatcaagttggatgaagatgtattatgtctaacggttggatgcgcgtgttttcttttgttagaatgtagtggcaattagttgtgttgtaaaccgtgatcaagcatagtcttgtaccataacgctgtcaatcagagtgattgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="16546" stop="17822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16842" g_stop="17006" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17157" g_stop="17527" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="522" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E436332" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16842" e_stop="17006"/>
          <exon e_start="17157" e_stop="17527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATGGTAAGATCTCTGTGCTGCTTTTCCCATCCCTCTCTTTTCCTCTTCTCTTATCTGGTGTTCAATCCCCTAGGGTTTTCCAGTAGCACCTCCCACACACGAATGAGAGTGGTTTATATTTGCACTTCTGATGACACATTGAAATTTCAACAGGGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGTGACGATGATGAAGAATACTACGATGGTGAAGATGAAGAATAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGATTTGTCTAAATATGTTC</genome_strand>
        <mrna_strand>TTTCTCAGTAAAAGCTATTTCTAGTCTTCTAGCACAAAACACG-TTAAAAAGACTAGTTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATG......................................................................................................................................................GGAACTGTCATAAGAGACCGAATTCAAGAGCAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGCGACGAAGATGAAGAATACTACGATGGTGAAGATGAAGACTAGGGTTGCTTACTTTCTCATGTTATGTGGTGATGTAAAATTTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGT-CTAACGGTTGGAT--GC---------GCGTGTTTTCTTTTGTTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGA-TTGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229412" ref_strand="+" ref_description="SGN-E229412 [cLEL-4-N3](-)">
      <seq>tagggttgttcactttctcatgttatgtggtgatgtaaaatgtagtttatggatcaagttggataaagatgtattatgtcctaacgtttggatgcgcgtgtaatatgcgtgttttattttggtagaatgtagtggcaattagttgtgttgtaaaccgtgatcaagcatagtcttgtaccataacgctgtcaatcagagtgttttgtctaaaaaaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="17010" stop="17824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17310" g_stop="17535" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E229412" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17310" e_stop="17535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGATTTGTCTAAATATGTTCTTGAAAAT</genome_strand>
        <mrna_strand>TAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATAAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTAATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGTTTTGTCTAAAAAAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482946" ref_strand="+" ref_description="SGN-E482946 [cSTE-6-K9]">
      <seq>cctatttgtatttggagccctaattcctaaatcaaaagtcacaggccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacattttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18319" stop="23214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18619" g_stop="18789" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="344" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="514" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22914" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="557" r_length="43" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E482946" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18619" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATGTGTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATG</genome_strand>
        <mrna_strand>CCTATTTGTATTTGGAGCCCTAATTCCTAAATCAAAAGTCACAGGCCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340429" ref_strand="+" ref_description="SGN-E340429 [cTOF-1-K11]">
      <seq>ctatgtgtatttggagccctaattcctaaatcaaaactcacaggccacagcctccagctctctcttttttgttctctgaactctcagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggattattggtttggccctccctgtttgtgcagcagctgtcagagatccatatcccattctacgagagttttagcttgccaaatctcgacagatttattcttaacactgtccactaatctctttgacttagctacttgttcacttaggaatcaagagtagagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18320" stop="22908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18620" g_stop="18789" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21393" i_length="2604">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21394" g_stop="21545" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="322" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21546" i_stop="21633" i_length="88">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.528" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="495" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22534" g_stop="22608" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="570" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E340429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18620" e_stop="18789"/>
          <exon e_start="21394" e_stop="21545"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTGTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATG</genome_strand>
        <mrna_strand>CTATGTGTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAG........................................................................................TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441230" ref_strand="+" ref_description="SGN-E441230 [cSTA-29-P1]">
      <seq>gtatttggagccctaattcctaaatcaaaagtcacaggccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggactagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18326" stop="22945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18626" g_stop="18789" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="334" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22646" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="447" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E441230" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18626" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAA</genome_strand>
        <mrna_strand>GTATTTGGAGCCCTAATTCCTAAATCAAAAGTCACAGGCCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585546" ref_strand="+" ref_description="SGN-E585546 [68007]">
      <seq>cctaaatcaaaagtcacaggccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtgacggactgtaagctacctcgtctcaccttagtaatttttagtagtagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctcgcatggttgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattggggcctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18344" stop="24912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18644" g_stop="18826" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18827" i_stop="21633" i_length="2807">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="356" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="526" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="575" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="601" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="682" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24612" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="749" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E585546" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18644" e_stop="18826"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGC</genome_strand>
        <mrna_strand>CCTAAATCAAAAGTCACAGGCCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTGACGGACTGTAAGCTACCTCGTCTCACCTTAGTAATTTTTAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTCGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGGCCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446868" ref_strand="+" ref_description="SGN-E446868 [cSTA-23-G2]">
      <seq>ctaattcaaatttcacaggccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtgacggactgtaagctacctcgtctcaccttagtaatttttatagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctcgcatggttgacatttgggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18345" stop="23216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18645" g_stop="18822" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18823" i_stop="21633" i_length="2811">
            <donor d_prob="0.162" d_score="0.90"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="351" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="521" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22916" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="566" r_length="45" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E446868" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18645" e_stop="18822"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGAT</genome_strand>
        <mrna_strand>CTAATTCAAATTTCACAGGCCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTGACGGACTGTAAGCTACCTCGTCTCACCTTAGTAATTTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTCGCATGGTTGACATTTGGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565134" ref_strand="+" ref_description="SGN-E565134 [1480]">
      <seq>atcaaaagtcacaggccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagacaagtaaacttcagataggccaaagatactgctcaacaggttcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgatacaaggtgaacctggtcatcaaaaagcgaaagagagaagcccaagaacttctggttataccctgctgtggaagttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18349" stop="24715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18649" g_stop="18789" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="314" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="485" r_length="171" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="535" r_length="50" r_score="0.898"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="562" r_length="27" r_score="0.731"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24372" i_length="1339">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24373" g_stop="24412" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="605" r_length="43" r_score="0.825"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E565134" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18649" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24373" e_stop="24412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATA-GCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATA-AAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAA-CTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAG-ACTTCT-GTTATA-CCTGCTGTGGAAGTT</genome_strand>
        <mrna_strand>ATCAAAAGTCACAGGCCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGACAAGTAAACTTCAGATAGGCCAAAGATACTGCTCAACAGGTTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATACAAG.......................................................................................GTGAACCTGGTCATCAAAAAGCGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGCCCAAGAACTTCTGGTTATACCCTGCTGTGGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483022" ref_strand="+" ref_description="SGN-E483022 [cSTE-6-N2]">
      <seq>aagtcacaggccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtgacggactgtaagctacctcgtctcaccttagtaatttttagtagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctcgcatggttgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggnaaagtgagcctncaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaanatttatagaaatgaattggggcctgagcctattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18354" stop="24921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18654" g_stop="18822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18823" i_stop="21633" i_length="2811">
            <donor d_prob="0.162" d_score="0.90"/>
            <acceptor a_prob="0.528" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="343" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="513" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="562" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="588" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="670" r_length="82" r_score="0.926"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24621" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="746" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E483022" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18654" e_stop="18822"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAG-TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGG-AAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCAT</genome_strand>
        <mrna_strand>AAGTCACAGGCCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTGACGGACTGTAAGCTACCTCGTCTCACCTTAGTAATTTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTCGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGNAAAGTGAGCCTNCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAANATTTATAGAAATGAATTGGGGCCTGAGCCTATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426582" ref_strand="+" ref_description="SGN-E426582 [STM-46-F22]">
      <seq>aagtcacaggccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtgacggactgtaagctacctcgtctcaccttagtaatttttagtagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacgggaaatttgaaaacaccggggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18354" stop="22941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18654" g_stop="18822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18823" i_stop="21633" i_length="2811">
            <donor d_prob="0.162" d_score="0.90"/>
            <acceptor a_prob="0.528" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="343" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22641" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="452" r_length="109" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E426582" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18654" e_stop="18822"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAG-TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACC-GGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGA</genome_strand>
        <mrna_strand>AAGTCACAGGCCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTGACGGACTGTAAGCTACCTCGTCTCACCTTAGTAATTTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGGAAATTTGAAAACACCGGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706812" ref_strand="+" ref_description="SGN-E706812 [FA31AA07]">
      <seq>ccacagcctccagctctctcttttttgttctctgaactctcagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggattagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagatagccaaggatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatcctccatccgaaagtcatcaggatgcattagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattgggtccggagcctattccattggttgttcctggagaggtagtcaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggaaaatgaaaatctagtggaagacggaaaaacagatttggataaaaggccgcaaaagccccaaatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18364" stop="25157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18664" g_stop="18789" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="296" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="466" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="515" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="541" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="622" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="733" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="816" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E706812" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18664" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG</genome_strand>
        <mrna_strand>CCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG........................................................................................GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAAAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458557" ref_strand="+" ref_description="SGN-E458557 [cPRO-6-I23]">
      <seq>ccacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggactagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18364" stop="22897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18664" g_stop="18789" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="296" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22597" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="360" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E458557" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18664" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACT</genome_strand>
        <mrna_strand>CCACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444328" ref_strand="+" ref_description="SGN-E444328 [cSTA-42-F3]">
      <seq>cacagcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18365" stop="22907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18665" g_stop="18789" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="298" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22607" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="372" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E444328" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18665" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAAT</genome_strand>
        <mrna_strand>CACAGCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588169" ref_strand="+" ref_description="SGN-E588169 [41716]">
      <seq>gcctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggactagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattggggccagagcctattccattggttgttcctggagaagcagttaatgaagaagatatgtatctccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18369" stop="25133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18669" g_stop="18789" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="291" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="461" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="510" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="536" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="617" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="728" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24774" g_stop="24833" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="788" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E588169" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18669" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGAC</genome_strand>
        <mrna_strand>GCCTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGGCCAGAGCCTATTCCATTGGTTGTTCCTGGAGAAGCAGTTAATGAAGAAGAT.....................................................................................................................ATGTATCTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582709" ref_strand="+" ref_description="SGN-E582709 [8342]">
      <seq>ctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagccctccaggatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18371" stop="24730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18671" g_stop="18789" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="292" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="462" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="511" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="537" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24430" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="592" r_length="55" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E582709" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18671" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAG-CCTCCAGGATGCTCA</genome_strand>
        <mrna_strand>CTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCCTCCAGGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445506" ref_strand="+" ref_description="SGN-E445506 [cSTA-45-B22]">
      <seq>ctccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18371" stop="22969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18671" g_stop="18789" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="292" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22669" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="428" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E445506" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18671" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCA</genome_strand>
        <mrna_strand>CTCCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445502" ref_strand="+" ref_description="SGN-E445502 [cSTA-45-B10]">
      <seq>ctccagccctctcttgtctgttctctgagctctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacatatgtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagagactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18371" stop="22921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18671" g_stop="18789" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="292" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22621" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="380" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E445502" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18671" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACC</genome_strand>
        <mrna_strand>CTCCAGCCCTCTCTTGTCTGTTCTCTGAGCTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATATGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGAGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207847" ref_strand="+" ref_description="SGN-E207847 [cLEC-32-L24]">
      <seq>tccagctctctcttttttgttctctgaactctcagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggattagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagatagccaaggatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18372" stop="24703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18672" g_stop="18789" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="288" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="458" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="507" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="533" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24403" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="560" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E207847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18672" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCT</genome_strand>
        <mrna_strand>TCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449626" ref_strand="+" ref_description="SGN-E449626 [cSTS-7-E17]">
      <seq>ccagccctctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggactagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgntgcagatgaaatgcagaaaatttatagaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18373" stop="24899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18673" g_stop="18789" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="287" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="457" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="506" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="532" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="613" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24599" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="667" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E449626" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18673" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAA</genome_strand>
        <mrna_strand>CCAGCCCTCTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGNTGCAGATGAAATGCAGAAAATTTATAGAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266326" ref_strand="+" ref_description="SGN-E266326 [cLEI-3-A9]">
      <seq>ccagctctctcttttttgttctctgaactctcagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggattagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactgcactaaagatgctctttcaggcggttctcttgctcaagttcccagcgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagatagccaacgatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18373" stop="23235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18673" g_stop="18789" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="287" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="457" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="506" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23022" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="521" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E266326" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18673" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCA</genome_strand>
        <mrna_strand>CCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTGCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGCGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAACGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231180" ref_strand="+" ref_description="SGN-E231180 [cLED-5-G4]">
      <seq>cagctctctcttttttgttctctgaactctcagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggatttagagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18374" stop="22894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18674" g_stop="18789" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.528" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="289" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22594" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="350" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E231180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18674" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTAT</genome_strand>
        <mrna_strand>CAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338755" ref_strand="+" ref_description="SGN-E338755 [cTOE-21-I20]">
      <seq>tctcttttttgttctctgaactctgagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggattgtaagctacctcatctcccattagtaatatttaattggtttggccctccctgtttgtgcagcagctgtcagagatccatatcccattctacgagagttttagcttgccaaatctcgacagatttattcttaacactgtccactaatctctttgacttagctacttgttcacttaggaatcaagagagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18380" stop="22027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18680" g_stop="18822" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18823" i_stop="21393" i_length="2571">
            <donor d_prob="0.162" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21394" g_stop="21545" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="295" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21546" i_stop="21636" i_length="91">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21637" g_stop="21727" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="386" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E338755" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18680" e_stop="18822"/>
          <exon e_start="21394" e_stop="21545"/>
          <exon e_start="21637" e_stop="21727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAAC</genome_strand>
        <mrna_strand>TCTCTTTTTTGTTCTCTGAACTCTGAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAG...........................................................................................AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444545" ref_strand="+" ref_description="SGN-E444545 [cSTA-43-G4]">
      <seq>ctcttctctgttctctgaactctcacagccactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttgtttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18381" stop="24758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18681" g_stop="18789" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="282" r_length="173" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="452" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="527" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="608" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24553" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="616" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E444545" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18681" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATT</genome_strand>
        <mrna_strand>CTCTTCTCTGTTCTCTGAACTCTCACAGCCACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTGTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284823" ref_strand="+" ref_description="SGN-E284823 [cLER-19-I17]">
      <seq>ttttgttctctgaactctcagttacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggattagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcgggtctcttgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18386" stop="22066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18686" g_stop="18789" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21766" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="234" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E284823" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18686" e_stop="18789"/>
          <exon e_start="21637" e_stop="21766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAA</genome_strand>
        <mrna_strand>TTTTGTTCTCTGAACTCTCAGTTACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGGTCTCTTGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554271" ref_strand="+" ref_description="SGN-E554271 [cTSC-3-M14]">
      <seq>cagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggatttagagagatggggaagaataagagctcaaggaaagggaagaaggcgtggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacgaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccgagaagaaaagtaaacttcagatagccaaggatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatcctccatccgaaagtcatcaggatgcattagcttgtgctgttgcagatgaaatgcagaatatttatagaaatgaattgggtccggagcctattccattggttgttcctggagaggtagtcaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18404" stop="25116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18704" g_stop="18789" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="259" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="429" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="478" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="504" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="585" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="696" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24774" g_stop="24816" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="739" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E554271" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18704" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATG</genome_strand>
        <mrna_strand>CAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCGTGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACGAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCGAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG........................................................................................GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAATATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281723" ref_strand="+" ref_description="SGN-E281723 [cLER-14-C5]">
      <seq>cagagacactgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggatttagagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagatagccaaggatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18404" stop="23240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18704" g_stop="18789" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.528" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="259" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="429" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="478" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="504" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E281723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18704" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAG</genome_strand>
        <mrna_strand>CAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269702" ref_strand="+" ref_description="SGN-E269702 [cLEM-17-G16]">
      <seq>ctgtgtcggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctctatctctcagcgtgacggattagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaagcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18412" stop="22973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18712" g_stop="18789" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="248" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22673" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="388" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E269702" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18712" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATA</genome_strand>
        <mrna_strand>CTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAAGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570981" ref_strand="+" ref_description="SGN-E570981 [15650]">
      <seq>cggcgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtaacggactagagatggggaagaataagagttcaagggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctggcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaagtgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacaggctcaagacaggatttgtccggtggagactctggcatggttgaccatttgggcatgatagaggtgaactggtcgatcgaaaaccaaaaagaagccaccaaacttctgttatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18418" stop="23210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18718" g_stop="18789" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="243" r_length="171" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="416" r_length="173" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="467" r_length="51" r_score="0.837"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.83"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="495" r_length="28" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E570981" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18718" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAA-GGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAA-TGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAA-A-AGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGA-CATTT-GGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTC-ATC-AAAACCAAAAAG</genome_strand>
        <mrna_strand>CGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGTTCAAGGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGGCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAAGTGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGCTCAAGACAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACCATTTGGGCATGATAGAG.......................................................................................GTGAACTGGTCGATCGAAAACCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468072" ref_strand="+" ref_description="SGN-E468072 [cSTB-2-M14]">
      <seq>cgaccagcaagcacagcggcgcagcaaaactctcgtctgtcgactctcaatctctcagcgtgacggacttagagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcgaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtgaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgataaaggcgaattggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18421" stop="24897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18721" g_stop="18789" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.528" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="242" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="412" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="461" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="487" r_length="26" r_score="0.885"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="568" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24597" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="620" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E468072" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18721" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATG</genome_strand>
        <mrna_strand>CGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTGACGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCGAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTGAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GCGAATTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597626" ref_strand="+" ref_description="SGN-E597626 [67496]">
      <seq>gcaaaactctcgtctgtcgactctcaatctctcagcgtaacggactagagatggggaagaataagagttcaaggaaagggaagaaggcatggagagcaaacataagtacggaggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagttttaaaaaaaaaaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18444" stop="30984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18744" g_stop="18789" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847">
            <donor d_prob="0.997" d_score="0.93"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21637" g_stop="21806" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="216" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="386" r_length="170" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="23007" i_length="304">
            <donor d_prob="0.977" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23008" g_stop="23031" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="410" r_length="24" r_score="0.542"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E597626" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18744" e_stop="18789"/>
          <exon e_start="21637" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="23008" e_stop="23031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAA</genome_strand>
        <mrna_strand>GCAAAACTCTCGTCTGTCGACTCTCAATCTCTCAGCGTAACGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGGGAAGAATAAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGTTTTAAAAA................................................................................................................................................................................................................................................................................................................AAAAAATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271797" ref_strand="+" ref_description="SGN-E271797 [cLEM-8-O9]">
      <seq>tcgactctctatctctcagcgtgacggatttagagagatggggaagaataagagctcaaggaaagggaagaaggcatggagagccaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttcaggcggttctcttgctcaagttcccagtgactctctcttttatgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagatagccaaggatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatcctccatccgaaagtcatcaggatgcattagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="18460" stop="24905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18760" g_stop="18789" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.528" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21634" g_stop="21806" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="203" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="373" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="422" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="448" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="529" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24546" g_stop="24605" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="589" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E271797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18760" e_stop="18789"/>
          <exon e_start="21634" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTATGTATCTCTCGGTCTCTTTTCTCTGCCTACAGCAAAACAGCAAGCTAAATTTTAAGATATTTCTGTTGTTTTAAGTATTGAATTCTTGTGTTGAATGTTTTTGGGCTGGCTGCCTTGTTCCTGGTAATGTTATTTTATATTTGGATTGTGTTTCTGGCTTGCTGTTGCTGAAGTGTTTTGCCAAGTTAGAATTTTTTTTTTTGTGACTGCTAAGCAACTTGCTAATTGGCATGGCTGCTGCGGTGCTGGCAACTGGTTAGACTATTATGTGCAAGTGAGCCGTGCTGTACTGCTCCGAGCCTGCGAGTGGGCTGCCTGCTATGTTAGTTCACCTTGAAATAGACCAAATTTAGTTCATAGTTTAGCCTATTAAGTTAGTTCATTGTTATAAGAGCAGTGCTAACTTATTACTTAAGTATTGAATGTTGATACTTGACAACAGCGAAGAATGCTAGGCTGTTAGGCTGAGAAGAGTGTTATAAAAAAAGAGACATTACGAGACTAAGAGCCTTTATTTATTTGAATTTTCATGTTAACTTTATAAGTTAAATATTTTGATAATTTTGTTCTCATTTGCACCAAAAAACCATTTTAAAAACACTGAACCGAAGTTTGGTTCGGTATTTGGTACACACTATTTCAAATCTGAATACCGAAGAACCGAACCGGATTTGATACAAGAAAGCAAATAAAGAAAAAAAAAGTAAGACAGTTGAATCTTCTAGCCTTAAACTAAAGATTGAAACGGACTGTACTGTTCCTTTTTATTTTTAAGAGTACTTATTAATTATCTTATTATTGCTAAAAAATGGTTGGGGGCCTAAGGCAAGTTCTCTATTTTCCAATGCATACAGCTGCCCCTGATTGTAAATGTGCAATACATGCAGCTGTTACCAGGCTTTACTAGTCTATGTCTACATAGAGATGTCAATGTGAGTTTGGAACCATCAAAATGAAAAGGACTAAATCCTAGAGTTAGAATCTTATCTTCTTTACTGTTTTGATTCATTAGTCTTTATGCTTTGTGTTTTTCTTTATCAGATCTAAATGAGAAAAAGAAATGGTTAGCTTAATTACAATGTGAACTAGCTCTGGAGATCAGTAGCTAATAGCTAAGTGTGATGTATGTTCATTAGATGCCATATAGGATCAGTAGTCTATGAACTATGAAGAGGTCAGTAAGATGAGTGATCAGTCTTGTTAAGCTTAAGTCTATAATTTATTTGAACTCTATTATGTTTCTGTTAGCGGCAGCCCCTTCATGTGGATATATTGTGTTTGTATGTCGTGATTTCCTCTAGTCTAGATAGTAAAGGTTTAATAAATTTCTATCAACAAGTATTTGACTAATCAGGGATTTTTGAATTAAGGTTCTTGTTGTATTCTAGAACTTTTAGTTATCTTGCCACCTTAAAATTAGCACAAAATGGCTAAAGAATCTTGTGTTGGCCTTCTTGTTCTCATTCATAAACTTGAGATGAAGTCTTGTTGTATATGTTTTCAGCTATAAGGTTGCTGTCCAGGAGGAATATCTTTAGCTCACTTGTAAATAAAGGGAAACCCCTTCCAGTATTAGCAACATCATCTTGTGAGGGGTCTAATTGTATTATGTTCAAGACTATTTTTGTTGAGTCTCTTATTCATGAAGGGTCTAAAACTTGTGATTTTTAACTGAAATAAGTACTAAGAAATGATTTAAGGATAATCAAAAACTTGTAGATGGCCTGTTTCAGCTATGTGTTTGCAAGTCTAGTTTCAAACTTGTTTAGCTTTCCTTCATGTTTATGCTTGAGTAGTTGACTAGTTGATCTGTGACATAAGAGGCTTATCATATCCCGTTATGTGGTTGGGTAACATCTGTCTCTTTGTTTATTTAAGATCCCCTTTAACTTGAGAGGAGTTTTATTTTTGTTCAAGAAAAGATCAAGTTTGTTCAAAAATAATGCTCTCTGGTTGTGTTTGTATTTTTAAAAATGAGAAGATTTGGCATTTAAGAGAATTGTCACTGCTTACTTGAGATTAATGGTACCCCTTCCTAGTCTTGAATGGCTTAAGTATGTTGAAAACTCACTACATGAGCCCCTTTTAAAGTTCTGAACATAGCACCCTTCTTTGTTTTTTAAGTTGTGAGTAAGAAGTACTCCCTCTGTCACCAATTACTTGTCCACTTTTGAATTTGCACACCTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATATTACCCCTATTAATTATGAAGTGGATGAATTGAAACTTAAGACATTCAAGAAGTTTTTACCTTTTACAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAAATTGGCCTTTCTTGATTTGTCAAAATGGACTAGTAATTAGGGATAGAGTGAGTAGCAGTTTCCTATGCAATTATTTTTTTGCGATTATTTTCTTCATTTTACTGTTCATAAACCCATGATTGTTCAGGGACTTTTTTGCTCTGTTCGATGTGCTTACCACTTCCTAAATCCTGAATAATTAACCTTAGGATCATTAGTTAAGACTAAATCCATTAAGACTTTAGTGGTAATAATTTTCCAGATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAGGTATAAATTCTCAAGTGACTGTTTTACATTTATGCTAAATCTGTTTTGGGACCATGTTTTCAATATGACTTTTACTGCACTTGTTAAGTAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGT</genome_strand>
        <mrna_strand>TCGACTCTCTATCTCTCAGCGTGACGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG........................................................................................GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448756" ref_strand="+" ref_description="SGN-E448756 [cSTS-4-I22]">
      <seq>aagagttcaaggaaagggaagaaggcatggagagcgaacataagtacggaggatattgaagatttctttgacaactccactaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtgaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgataaaggcgaattggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattggggccggagcctattccactggttgttcctggagaagcagttaatgaagaagatatgtatttccttgaagcggacagtgggagtgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="21353" stop="25107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21653" g_stop="21806" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="324" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="373" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="399" r_length="26" r_score="0.885"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="480" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="591" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24774" g_stop="24807" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="625" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E448756" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21653" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACA</genome_strand>
        <mrna_strand>AAGAGTTCAAGGAAAGGGAAGAAGGCATGGAGAGCGAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTGAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GCGAATTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGGCCGGAGCCTATTCCACTGGTTGTTCCTGGAGAAGCAGTTAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459369" ref_strand="+" ref_description="SGN-E459369 [cPRO-27-L23]">
      <seq>gttcaaggaaagggaagaaggcatggagagcaaacataagtactttggatattgaagatttctttgacaactccaccaaagatgctctttccggcggttctcttgctcaagttcccagtgactctctcttttacgtcgacaaatccagagatctttctgtcaaacggaaaattgaaaaacaccgggagaaagtacttcgatatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaagtccaagaagaaaagtaaacttcagatagccaaagatactgctcaacagggtcaaaaggatttgtccggtggagactctggcatggttgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattggggccagagcctattccattggttgttcctggagaagcagttaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagacggaaaaacagatttggataaaaggtcgcaaaagcccaaaatgctgacacaagttgataagaatcgacgggctagacgcaaagaacagttgaaagcagaagctgaaagcacaaaagcagcacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="21357" stop="26445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21657" g_stop="21806" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22534" g_stop="22703" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="320" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="369" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="395" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="476" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="587" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="670" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26044" g_stop="26145" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="772" r_length="102" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E459369" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21657" e_stop="21806"/>
          <exon e_start="22534" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAGGTATTCTATTTTTCAGCATTTTTTTCCCGGTTGAAAATTTCCAGAAGTATCTTTTGTTCAAGTAAATAGCAAGGTAAAAAAAAGAACAAGCCGATTTTGATATCAGGCTGGTGTTCACGTATATGTTCTAGCAGCTGATATAGTCTTTAGATGGATGGTATGTATGTGATTTACTGTTCCAACAGATGTATTGAACTAACGTTGGTTGGATAACTGGTTTACTCCACATTTGAAAATGGTATTTTCTTTTAACAGTAGTTTTTTGGTACACGGGAAATAACTGAGTGCTCTGATAATCTTCTCCAGAATTTTGTTTTGGTAGAATCAGTCAAGAGTATTGTGTACTAAGACAAGTAGACCAAATAATTCGGTATCTCATAGAGTTGTAATTATGGAAAAAATTCAATCTTGAGAGCAGATTGAACTTTCATGTCTGTTTTAGACTTGCAGTAATTGTTAGGGTGTTGCTTTTCAGTCAATGGTTCGTGTTCCCATCCAATTGTTGGCTGTAATATGAAGCCGGATGAATTTTGGAGATAGTAACTGACATTTTTGGACTAGAAGAGGGCAGTTTAGAATCACCTTAAGTACTATGTCTCTGGACTATGTAGCAGTTGATGTTCATCATGGGTGCATCTTCCTTTTCCCTTTACTGCAGTTCTGTCGTTTTTTGTTGGTGAATCCTTCTTCAGTGATCAAATGACAAGTTTTTATGTCTACAATCCAGATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACT</genome_strand>
        <mrna_strand>GTTCAAGGAAAGGGAAGAAGGCATGGAGAGCAAACATAAGTACTTTGGATATTGAAGATTTCTTTGACAACTCCACCAAAGATGCTCTTTCCGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTACGTCGACAAATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAGTCCAAGAAGAAAAGTAAACTTCAGATAGCCAAAGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTTGTCCGGTGGAGACTCTGGCATGGTTGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGGCCAGAGCCTATTCCATTGGTTGTTCCTGGAGAAGCAGTTAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAAAAGCCCAAAATGCTGACACAAGTTGATAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAAGCACAAAAGCAGCACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200978" ref_strand="+" ref_description="SGN-E200978 [cLEC-5-M13]">
      <seq>tatgataggatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagatagccaaggatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatcctccatccgaaagtcatcaggatgcattagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattgggtccggagcctattccattggttgttcctggagaggtagtcaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagacggaaaaacagatttggataaaaggccgcaaaagcccaaaatgctgactcaagttgagaagaatcgacgggctagacgcaaagaacagttgaaagcagaagctgaagcaacaaaagcagcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="22284" stop="26444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22584" g_stop="22703" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="169" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="195" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="276" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="387" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="470" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26044" g_stop="26144" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="571" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E200978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22584" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAAC</genome_strand>
        <mrna_strand>TATGATAGGATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG........................................................................................GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203973" ref_strand="+" ref_description="SGN-E203973 [cLEC-22-G16]">
      <seq>tatgatagtatactacaaagcaatgcctttgttgaacctgtaccttcttcaactgggaagaaatccaagaagaaaagtaaacttcagatagccaaggatactgctcaacagggtcaaaaggattcgtctggtggagactctggcatggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatcctccatccgaaagtcatcaggatgcattagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattgggtccggagcctattccattggttgttcctggagaggtagtcaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagacggaaaaacagatttggataaaaggccgcaaaagcccaaaatgctgactcaagttgagaagaatcgacgggctagacgcaaagaacagttgaaagcagaagctgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="22284" stop="26427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22584" g_stop="22703" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22872" g_stop="22920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="169" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="195" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="276" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="387" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="470" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26044" g_stop="26127" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="554" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E203973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22584" e_stop="22703"/>
          <exon e_start="22872" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAGGTTGTTCACTATTTCATTTTAAATGTTCAACTCTCCAATTGCAAGATGTTATGGCTGATGCTTCCTTGGCATAATGTGCTTCTCTCAATAGGAGAAAAATCTTTTCTTTTGAGTGCAAATGCCTAATGGATCCTCATTGTTTATTTCTTGTTAACTTTGTGTGATTAGGATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGC</genome_strand>
        <mrna_strand>TATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG........................................................................................................................................................................GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG........................................................................................GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702536" ref_strand="+" ref_description="SGN-E702536 [FA19AA04]">
      <seq>ggttgacatttggaatgataaagatgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatcctccatccgaaagtcatcaggatgcattagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattgggtccggagcctattccattggttgttcctggagaggtagtcaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagacggaaaaacagatttggataaaaggccgcaaaagcccaaaatgctgactcaagttgagaagaatcgacgggctagacgcaaagaacagttgaaagcagaagctgaagcaacaaaagcagcacaactctccaaagagattgatagcttaccggatattattcaagaaatagagagagaggaaggagaaaaacagaaacgacatctacgtcgtgtcactgctataaaagaaaaactaaaatcttgtccaccacgcttgggaaagcgcaaattcgtgcctgctcctgctcaggttttactgtctgaagagattactggttccctgcgtaaattaaagggatgttgcacccttgcaagagatcgatttaaaagcctggagaaaaggggactagttgttccttcaaaaaagagtagcaggaaatagagtgaattgcaagtaacacagataaatgttttcatcaccgcactatgagaccatcatcccgatcacctggatgagagacactgtagacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggctgctctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="22598" stop="27858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22898" g_stop="22920" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="49" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="130" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="241" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="324" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26044" g_stop="26163" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="444" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26256" g_stop="26378" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="567" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26634" g_stop="26700" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="634" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26791" g_stop="26870" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="714" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="27409" g_stop="27558" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="864" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E702536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22898" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26163"/>
          <exon e_start="26256" e_stop="26378"/>
          <exon e_start="26634" e_stop="26700"/>
          <exon e_start="26791" e_stop="26870"/>
          <exon e_start="27409" e_stop="27558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAGGTTTGCTGATATTTCGAATATCAGGCTCATCATATTCCAGTTAAATAGAATTTGCCTTTTGTATAGATTATGATATGTTCTTGTGCCTGCAGCTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAAGTATGTACTGTTTCATTTTGAAGTAAAAAATTTCAACAATTGATTTGCTGAGAAAAAGTGTTTTCATAGAACATCAGATTTTAAAGGGATTTTTATGGTTATAACTCTTTTAAAAATGTTTCAACTGGGAGCTTGGGGTTTCAAAGAATGATGATTGCATGAGCTGAGCAATGAGACTCATTTTCTTGTGGTTTTGGTTTTTTCCTGCTATAACTTCAGTGTTGACAAAAAGATAATTGACCTATGTGATTTCAGATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAGGTTGCATTCCTGATTTCAATTTTCTCCAAATTGGCTGTCTGTATTTTCAAATTTTTTCTCTTATGTTATTTGTCTTCCTGTTTCAAACAGGGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAGGTTAGTAAAGATTGCTTCTTGTTTGAAATTAAGCCACACTTTCTGGTTTTGGCTTGCTTATTATTTGAAACTAAAAGTATTGCATGCTGTCTTGAAGTGTGTGTGAACCATGTGACACTGAGACAATTGCGGAGTAATCTCTTTTTCTTTAAAGTTTTTGACAGTGAGCTTTGTGCACGTTCCTAATGGCATCATAGTTGATCATAAATTTTGACAATACACCTTGCGGCTAACAAGATGTGAGGAAAATCACCAAAAATTGTTACCAATCGTTTGGGATCAAAAACTAGTATTTTGATAGTGAGCGTCATGTTCCTGATTCGCTATAATTGGAAATTCTGTCATTTCAATGTAACATTAAAGCTTGTGTTTGTGATAACAAATGCTTAAACTTCCCCTGCTTTTGGTTTCAACTTTCAATTAACGGAACTCATCTTTTCTCTGCATGTATCGAGCCATTATATACACTGTTTCAAAAGAAACATTCAGAGTATCAAAACATCTCTTGCTAATTGTTTCTGGTATGGGATGTGTGCAGGAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTA</genome_strand>
        <mrna_strand>GGTTGACATTTGGAATGATAAAG.......................................................................................ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG........................................................................................GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG............................................................................................CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA...............................................................................................................................................................................................................................................................ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG..........................................................................................GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474692" ref_strand="+" ref_description="SGN-E474692 [cSTB-37-K24]">
      <seq>tgacatttgggatgataaaggtgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattggggccggagcctattccattggttgttcctggagaagcagttaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagacggaaaaaccgatttggataaaaggtcgcaaaagcccaaaatgctgacacaagttgagaagaatcgacgggctagacgcaaagaacagttgaaagcagaagctgaagcaacaaaagcagcacaactctccaaagagattgatagcttaccggatataattcaagaaatagagagagaggaaggagaaaaacagaaacgacatctacgtcgtgttactgctttaaaagaaaaactaaaatcttgtccaccacgcttgggaaagcccaaatttgtgcctgcttctgctcaggttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="22694" stop="26963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22901" g_stop="22920" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="46" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="127" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="238" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="321" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26044" g_stop="26163" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="441" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26256" g_stop="26378" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="564" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26634" g_stop="26663" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="594" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E474692" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22901" e_stop="22920"/>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26163"/>
          <exon e_start="26256" e_stop="26378"/>
          <exon e_start="26634" e_stop="26663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTTGGAATGATAAAGGTGTCCTTGTGATTAGAGCCTTTTTGTTCTTCGTCACTTTTGTAGTAAAATGACTTTTCTAATACAGCCTTCGTTGCATTGTTGCAGATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAGGTTTGCTGATATTTCGAATATCAGGCTCATCATATTCCAGTTAAATAGAATTTGCCTTTTGTATAGATTATGATATGTTCTTGTGCCTGCAGCTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAAGTATGTACTGTTTCATTTTGAAGTAAAAAATTTCAACAATTGATTTGCTGAGAAAAAGTGTTTTCATAGAACATCAGATTTTAAAGGGATTTTTATGGTTATAACTCTTTTAAAAATGTTTCAACTGGGAGCTTGGGGTTTCAAAGAATGATGATTGCATGAGCTGAGCAATGAGACTCATTTTCTTGTGGTTTTGGTTTTTTCCTGCTATAACTTCAGTGTTGACAAAAAGATAATTGACCTATGTGATTTCAGATTCGTGCCTGCTCCTGCTCAGGTTTTACT</genome_strand>
        <mrna_strand>TGACATTTGGGATGATAAAG.......................................................................................GTGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGGCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAAGCAGTTAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACCGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAAAAGCCCAAAATGCTGACACAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG............................................................................................CTTACCGGATATAATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTTACTGCTTTAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCCCAA...............................................................................................................................................................................................................................................................ATTTGTGCCTGCTTCTGCTCAGGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339889" ref_strand="+" ref_description="SGN-E339889 [cTOF-3-B11]">
      <seq>atgaactggtcatcaaaaccaaaaagaagcccaagacttctgttatacctgctgtggaagttgagcctccaggatgctcattcaatcctccatccgaaagtcatcaggatgcattagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattgggtccggagcctattccattggttgttcctggagaggtagtcaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagacggaaaaacagatttggataaaaggccgcaaaagcccaaaatgctgactcaagttgagaagaatcgacgggctagacgcaaagaacagttgaaagcagaagctgaagcaacaaaagcagcacaactctccaaagagattgatagcttaccggatattattcaagaaatagagagagaggaaggagaaaaacagaaacgacatctacgtcgtgtcactgctataaaagaaaaactaaaatcttgtccaccacgcttgggaaagcgcanattcgtgcctgctcctgctcaggttttactgtctgaagagattactggttccctgcgtaaattaaagggatgttgcacccttgcaagagatcgatttaaaagcctggagaaaggggactagttgttccttcaaaaaagagtagcaggaaatagagtgaattgcaagtaacacagataaatgttttcatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="22708" stop="27754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23008" g_stop="23033" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24377" g_stop="24457" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="107" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="218" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="301" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26044" g_stop="26163" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="421" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26256" g_stop="26378" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="544" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26634" g_stop="26700" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="611" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26791" g_stop="26870" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="690" r_length="79" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="27409" g_stop="27454" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="736" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E339889" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23008" e_stop="23033"/>
          <exon e_start="24377" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26163"/>
          <exon e_start="26256" e_stop="26378"/>
          <exon e_start="26634" e_stop="26700"/>
          <exon e_start="26791" e_stop="26870"/>
          <exon e_start="27409" e_stop="27454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACTGGTCATCAAAACCAAAAAGGTACACTTTTTTCTCCTACCTGTATTTGAAAATTTTTATTTCTTTTCTCCTCTCCTTATCTTTTTTGTGGCCACTTGTCAGGAACTTTCTTTTCAATTTTGGTGTCCTTTTACATGAAAAACATATTTTAAATCATCTGGATGTAGTCCTTCTAAGTTGTACTGCAATACCTGCTATAGGTTTTCTTAATGCAACCTGCCTTTCTTTATGAGCACTACTATTATTGCCTTATAGTGATTACTTCTTAGTCCACTTAAAAAATAAGTCGTCTTAAGTCAATTGAATCTCTTATTTTTCAAGAAAACATCACATCTAAAAAGCATCTTTGCGATGAACCTTTTCCTTGCACATCCTCTGCATTGCTTATCCTCTCAGAGGATAGATGAGAGTAATAAAGGAAAAAAGACGCACGAGATTGGATATAAAAGATCCTTTATCGTGGAAGGTAATGGACCTAAATAAAGCAAAATGGATGTGGTGAACCATTATAGCTGACCCTAACTATGTCTGTGATTGATACATAGTTGATTGATTGATTCATTTAGTTTTCCATTCACTCGACAAACTTTCACCACTTCATTTGACGAATTAGAATATGCACAGATACAATGATCTGTAACTGATACAAGCTTTCATTGAATAAGATAACATGCATCCAAAAAGAGATTCTTTTCCATTTTGATCATTCCTCAGTTTGGCAGATTGAGATCCTTCCTTTTAGCATTATTGATGCTCTAGGCTGTCTAAAGATCTTGATCAAAATATGTGATGCATGTTTAGATAGTAATTGCATTTCAGGGTTTGGTTTTCTGTACTTTCCTGCTGTTGCGGAGTGAAGTCTTTTCATAATTTTCCCTTTTCAGTAGCTGGGGTAGATTGGATGGTGACACAAGCTTATTTGGTTGCGTTACGATGATGTTATAAAGTCAGTATTAGAACAACTAAAATGATCAAAATAACTGTCATGTATTTTGATCATTTTCTATAATTAAACAGAACACGTATTTAAATGTACAAATATTATTCATGCATTTTTAATACTTGTATTACTCTAATCCCTAAGATACAATCCTTACATTATAGTCCTTTCAGAACTTGTCTCTAAAGACCCCTTGGTGTATATTTTTTGTACCTCCCTGTATTCTTCTTCTTCTTAGTTCCATTTTTTGTTATCTTAACTGTGTATGTTATTTATTTATTATCCTAAAGCTCGAGCATTTGAATTGTGAACGTATGACTTCCCTAGAACAATAACAATTTTGCATCAGTTTACTTTTCGAAAAGGGAAGAGAGAAATCTGCATTAGTATATGTAATCAATTTTATATGCATTGCCTGTGACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAGGTTTGCTGATATTTCGAATATCAGGCTCATCATATTCCAGTTAAATAGAATTTGCCTTTTGTATAGATTATGATATGTTCTTGTGCCTGCAGCTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAAGTATGTACTGTTTCATTTTGAAGTAAAAAATTTCAACAATTGATTTGCTGAGAAAAAGTGTTTTCATAGAACATCAGATTTTAAAGGGATTTTTATGGTTATAACTCTTTTAAAAATGTTTCAACTGGGAGCTTGGGGTTTCAAAGAATGATGATTGCATGAGCTGAGCAATGAGACTCATTTTCTTGTGGTTTTGGTTTTTTCCTGCTATAACTTCAGTGTTGACAAAAAGATAATTGACCTATGTGATTTCAGATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAGGTTGCATTCCTGATTTCAATTTTCTCCAAATTGGCTGTCTGTATTTTCAAATTTTTTCTCTTATGTTATTTGTCTTCCTGTTTCAAACAGGGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAGGTTAGTAAAGATTGCTTCTTGTTTGAAATTAAGCCACACTTTCTGGTTTTGGCTTGCTTATTATTTGAAACTAAAAGTATTGCATGCTGTCTTGAAGTGTGTGTGAACCATGTGACACTGAGACAATTGCGGAGTAATCTCTTTTTCTTTAAAGTTTTTGACAGTGAGCTTTGTGCACGTTCCTAATGGCATCATAGTTGATCATAAATTTTGACAATACACCTTGCGGCTAACAAGATGTGAGGAAAATCACCAAAAATTGTTACCAATCGTTTGGGATCAAAAACTAGTATTTTGATAGTGAGCGTCATGTTCCTGATTCGCTATAATTGGAAATTCTGTCATTTCAATGTAACATTAAAGCTTGTGTTTGTGATAACAAATGCTTAAACTTCCCCTGCTTTTGGTTTCAACTTTCAATTAACGGAACTCATCTTTTCTCTGCATGTATCGAGCCATTATATACACTGTTTCAAAAGAAACATTCAGAGTATCAAAACATCTCTTGCTAATTGTTTCTGGTATGGGATGTGTGCAGGAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACC</genome_strand>
        <mrna_strand>ATGAACTGGTCATCAAAACCAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG........................................................................................GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG............................................................................................CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAN...............................................................................................................................................................................................................................................................ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG..........................................................................................GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAG-AAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402043" ref_strand="+" ref_description="SGN-E402043 [PPC-6-K13]">
      <seq>tcaatccgccatccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattggggccggagcctattccactggttgttcctggagaagcagttaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacagagaatgaaaatctagtggaagatggaaaaacagatttggataaaaggtcgcaaaagcccaaaatgctgacacaggttgagaagaatcgacgggctagacgcaaagaacagttgaacgcagaagctgaagcaacaaaagcagcacaactctccaaagagattgatagcttaccggatataattcaagaaatagagagagaggaaggagaaaaacagaaacgacatctacgtcgtgttactgctataaaagaaaaactaaaatcttgtccaccacgcttgggaaagcgcaaatttgtgcctgctcctgctcaggttttactgtctgaagagattactggttccctccgtaaattaaagggatgttgcacccttgcaagagatcggtttaaaagccttgagaaaaggggactagttgttccttcaaaaaagagtagcaggaaatagagtgaattgcagagtacacagataaaacgttttcatcaccgccatatgagaccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="24132" stop="27741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24432" g_stop="24457" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="137" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="220" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26044" g_stop="26163" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="340" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26256" g_stop="26378" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="463" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26634" g_stop="26700" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="530" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26791" g_stop="26870" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="610" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27409" g_stop="27470" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="673" r_length="63" r_score="0.855"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E402043" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24432" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26163"/>
          <exon e_start="26256" e_stop="26378"/>
          <exon e_start="26634" e_stop="26700"/>
          <exon e_start="26791" e_stop="26870"/>
          <exon e_start="27409" e_stop="27470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCTCCATCCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAGGTTTGCTGATATTTCGAATATCAGGCTCATCATATTCCAGTTAAATAGAATTTGCCTTTTGTATAGATTATGATATGTTCTTGTGCCTGCAGCTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAAGTATGTACTGTTTCATTTTGAAGTAAAAAATTTCAACAATTGATTTGCTGAGAAAAAGTGTTTTCATAGAACATCAGATTTTAAAGGGATTTTTATGGTTATAACTCTTTTAAAAATGTTTCAACTGGGAGCTTGGGGTTTCAAAGAATGATGATTGCATGAGCTGAGCAATGAGACTCATTTTCTTGTGGTTTTGGTTTTTTCCTGCTATAACTTCAGTGTTGACAAAAAGATAATTGACCTATGTGATTTCAGATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAGGTTGCATTCCTGATTTCAATTTTCTCCAAATTGGCTGTCTGTATTTTCAAATTTTTTCTCTTATGTTATTTGTCTTCCTGTTTCAAACAGGGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAGGTTAGTAAAGATTGCTTCTTGTTTGAAATTAAGCCACACTTTCTGGTTTTGGCTTGCTTATTATTTGAAACTAAAAGTATTGCATGCTGTCTTGAAGTGTGTGTGAACCATGTGACACTGAGACAATTGCGGAGTAATCTCTTTTTCTTTAAAGTTTTTGACAGTGAGCTTTGTGCACGTTCCTAATGGCATCATAGTTGATCATAAATTTTGACAATACACCTTGCGGCTAACAAGATGTGAGGAAAATCACCAAAAATTGTTACCAATCGTTTGGGATCAAAAACTAGTATTTTGATAGTGAGCGTCATGTTCCTGATTCGCTATAATTGGAAATTCTGTCATTTCAATGTAACATTAAAGCTTGTGTTTGTGATAACAAATGCTTAAACTTCCCCTGCTTTTGGTTTCAACTTTCAATTAACGGAACTCATCTTTTCTCTGCATGTATCGAGCCATTATATACACTGTTTCAAAAGAAACATTCAGAGTATCAAAACATCTCTTGCTAATTGTTTCTGGTATGGGATGTGTGCAGGAAATAGAGTGAATTGCAAGTAACACAGAT-AAATGTTTTCATCACCGCACTATGAGACCATC</genome_strand>
        <mrna_strand>TCAATCCGCCATCCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGGCCGGAGCCTATTCCACTGGTTGTTCCTGGAGAAGCAGTTAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACAGAGAATGAAAATCTAGTGGAAGATGGAAAAACAGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAAAAGCCCAAAATGCTGACACAGGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAACGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG............................................................................................CTTACCGGATATAATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTTACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA...............................................................................................................................................................................................................................................................ATTTGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTCCGTAAATTAAAG..........................................................................................GGATGTTGCACCCTTGCAAGAGATCGGTTTAAAAGCCTTGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAGAGTGAATTGCAGAGTACACAGATAAAACGTTTTCATCACCGCCATATGAGACCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401114" ref_strand="+" ref_description="SGN-E401114 [PPC-3-K1]">
      <seq>ccgaaagtcatcaggatgcactagcttgtgctgttgcagatgaaatgcagaaaatttatagaaatgaattggggccggagcctattccattggttgttcctggagaagcagttaatgaagaagatatgtatttccttgaagcggacagtgggagtgacacggagaatgaaaatctagtggaagacggaaaaaccgatttggataaaaggtcgcaaaagcccaaaatgctgacacaagttgagaagaatcgacgggctagacgcaaagaacagttgaaagcagaagctgaagcaacaaaagcagcacaactctccaaagagattgatagcttaccggatataattcaagaaatagagagagaggaaggagaanaacagaaacgacatctacgtcgtgttactgctttaaaagaaaaactaaaatcttgtccaccacgcttgggaaagcgcaaatttgtgcctgctcctgctcaggttttactgtctgaagagattactggttccctccgtaaattaagggatgttgcacccttgncagagatcggtttaaaagccttgagaaaaggggactagttgttccttcaaaaaagagtagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="24237" stop="27169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24444" g_stop="24457" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24546" g_stop="24656" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="125" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24774" g_stop="24856" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="208" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26044" g_stop="26163" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="328" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26256" g_stop="26378" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="451" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26634" g_stop="26700" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="517" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26791" g_stop="26869" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="596" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E401114" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24444" e_stop="24457"/>
          <exon e_start="24546" e_stop="24656"/>
          <exon e_start="24774" e_stop="24856"/>
          <exon e_start="26044" e_stop="26163"/>
          <exon e_start="26256" e_stop="26378"/>
          <exon e_start="26634" e_stop="26700"/>
          <exon e_start="26791" e_stop="26869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAAGTCATCAGGTAAAAATTTTTCTGTATGTCACATTTTGCTATTATCGAGCTCCTAGTCCACGCAATTAATAATTCGCTCTGTGTCTTCTCAATTCAGGATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGATGTAAGTTTAAGCTGCTACTTTCTTGTTAGTACTTTTGACCATGGCTGTTGCAGATGCATCATGGGCTATGTTTTCTTATACTGGGTAAAGTATGCACTGAAGATTCATTTGCCTCAGATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAGGTAAGCTTCTATATTGCTCGTCTGTAGTGATAGTGTTAGGGGTTGAAACATGTTCTATTCCTTGCTTGCTTAGTATTAGGGAGTACTTAAAATTATACTTAAAATTTACTCACCTGTGTCTATTCATATTTGTATAGTGAATTGACACTTCTTTGACGATCTTTAGGCTTTAGGCTTCAGAGAAATTAATTATGTGACAGTTCGATGTGTTAAATCTATATGATAAATTTTGCTGCAGTAAACTCAATAACATTTCAATCTCTGGACACTGGTTATACCCAATTAGCTTTAAGTCCTAAATTTTTTTTTGCAACTTTACAAGGCTAACATGAGTTGCCTTGTCCTCGTTTTTGTTCGTGGCTCACAATTCCTTATCATTCATGATCACTAGAAATACAATCTTATTTTATGTGGCTTTGCATGTTTAATAGTTGACATAGTCCTAAGCTGATGGATGTTTATGAGGTCAAAGGCAATATATGTACTGCTACGACTGATGGTCTAAGACATCGTGCTTCCTTCATCCTTATTTATTTGAATCCAGTTTTGCCCTTTTCTGTTTGTTTACTTTTTGCTGCTGGTGGGGGAAGAAGCTTTTATTTCCAGCATTTGTAGTAGTTCTTATTTTTGTCCACCAAGGCTAGGACAGATGGGAAGAATAACCTAGTGTTTTTTGTCTCTACTGAGTTTTGAACCTGACACCTTAGGGTTCTCAACCACTTATTGACTGTAGGCCACACCTTGGGTGCAACGAGTATCCTTTATATTTGGTTAAAGATGCTGAATGAGTACATTGTATATCACTGATATTTGGTTGCTTGGATATGTTCAGACCTCAGTTTAAGTCACCTACATCTGAAATCAGATTTTTAAATGTAAAGGGGTTTGATCCTTAATCTAGCTGAGTTAGATTGTGAGCTAAGTCCCCAGTAAGTGTGATATCCGACGTTATATCTGTTTGCTTTGGTGGTCATGATCCAAATGTCCTAATGATGGTCAGTTGTAGAGTGAACCAGCGTTCAAGATTTTCTTTTTTTGTAAGTCAGTTATGTGTTCTGAATGTTTGCAGTGTGCTAACTTCAGCTACGTTGGCAATCCATGTTACATTGAGTGCATTTTTGCTAGTCGTCAGATCTTTAATTTACTACTATATGAAATTATACATCATCAATTTTAACTTCATTCAGGCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAGGTTTGCTGATATTTCGAATATCAGGCTCATCATATTCCAGTTAAATAGAATTTGCCTTTTGTATAGATTATGATATGTTCTTGTGCCTGCAGCTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAAGTATGTACTGTTTCATTTTGAAGTAAAAAATTTCAACAATTGATTTGCTGAGAAAAAGTGTTTTCATAGAACATCAGATTTTAAAGGGATTTTTATGGTTATAACTCTTTTAAAAATGTTTCAACTGGGAGCTTGGGGTTTCAAAGAATGATGATTGCATGAGCTGAGCAATGAGACTCATTTTCTTGTGGTTTTGGTTTTTTCCTGCTATAACTTCAGTGTTGACAAAAAGATAATTGACCTATGTGATTTCAGATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAGGTTGCATTCCTGATTTCAATTTTCTCCAAATTGGCTGTCTGTATTTTCAAATTTTTTCTCTTATGTTATTTGTCTTCCTGTTTCAAACAGGGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCA</genome_strand>
        <mrna_strand>CCGAAAGTCATCAG........................................................................................GATGCACTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGGCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAAGCAGTTAATGAAGAAGAT.....................................................................................................................ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACCGATTTGGATAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAAAAGCCCAAAATGCTGACACAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG............................................................................................CTTACCGGATATAATTCAAGAAATAGAGAGAGAGGAAGGAGAANAACAGAAACGACATCTACGTCGTGTTACTGCTTTAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA...............................................................................................................................................................................................................................................................ATTTGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTCCGTAAATT-AAG..........................................................................................GGATGTTGCACCCTTGNCAGAGATCGGTTTAAAAGCCTTGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457106" ref_strand="+" ref_description="SGN-E457106 [cPRO-1-M24]">
      <seq>caaaagcagcacaactctccaaagagattgatagcttaccggatataattcaagaaatagagagagaggaaggagaaaaacagaaacgacatctacgtcgtgttactgctataaaagaaaaactaaaatcttgtccaccacgcttgggaaagcgcaaatttgtgcctgctcctgctcaggttttactgtctgaagagattactggttccctccgtaaattaaagggatgttgcacccttgcaagagatcggtttaaaagccttgagaaaaggggactagttgttccttcaaaaaagagtagcaggaaatagagttcattgcagagtaacacagataaaatgttttcatcaccgccatatgagaccatcatcccgagcacttggatgagagacactctagacagcaaggtcttggtttatatctgcaaatttggagtgggagagctggctgctcttactgttagcaaaatggatatgtagatctgtttgtcttactgatacatggtttattacaccaaatattttatagtcatagtcaatttgctttgggagaaaaaaccagtaatttgaagacattgctgttttaattgattactaaatttggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="25830" stop="27958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26130" g_stop="26163" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26256" g_stop="26378" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="157" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26634" g_stop="26700" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="224" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26791" g_stop="26870" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="304" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27409" g_stop="27658" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="556" r_length="252" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="615"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E457106" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26130" e_stop="26163"/>
          <exon e_start="26256" e_stop="26378"/>
          <exon e_start="26634" e_stop="26700"/>
          <exon e_start="26791" e_stop="26870"/>
          <exon e_start="27409" e_stop="27658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCAGCACAACTCTCCAAAGAGATTGATAGGTTTGCTGATATTTCGAATATCAGGCTCATCATATTCCAGTTAAATAGAATTTGCCTTTTGTATAGATTATGATATGTTCTTGTGCCTGCAGCTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAAGTATGTACTGTTTCATTTTGAAGTAAAAAATTTCAACAATTGATTTGCTGAGAAAAAGTGTTTTCATAGAACATCAGATTTTAAAGGGATTTTTATGGTTATAACTCTTTTAAAAATGTTTCAACTGGGAGCTTGGGGTTTCAAAGAATGATGATTGCATGAGCTGAGCAATGAGACTCATTTTCTTGTGGTTTTGGTTTTTTCCTGCTATAACTTCAGTGTTGACAAAAAGATAATTGACCTATGTGATTTCAGATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAGGTTGCATTCCTGATTTCAATTTTCTCCAAATTGGCTGTCTGTATTTTCAAATTTTTTCTCTTATGTTATTTGTCTTCCTGTTTCAAACAGGGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAGGTTAGTAAAGATTGCTTCTTGTTTGAAATTAAGCCACACTTTCTGGTTTTGGCTTGCTTATTATTTGAAACTAAAAGTATTGCATGCTGTCTTGAAGTGTGTGTGAACCATGTGACACTGAGACAATTGCGGAGTAATCTCTTTTTCTTTAAAGTTTTTGACAGTGAGCTTTGTGCACGTTCCTAATGGCATCATAGTTGATCATAAATTTTGACAATACACCTTGCGGCTAACAAGATGTGAGGAAAATCACCAAAAATTGTTACCAATCGTTTGGGATCAAAAACTAGTATTTTGATAGTGAGCGTCATGTTCCTGATTCGCTATAATTGGAAATTCTGTCATTTCAATGTAACATTAAAGCTTGTGTTTGTGATAACAAATGCTTAAACTTCCCCTGCTTTTGGTTTCAACTTTCAATTAACGGAACTCATCTTTTCTCTGCATGTATCGAGCCATTATATACACTGTTTCAAAAGAAACATTCAGAGTATCAAAACATCTCTTGCTAATTGTTTCTGGTATGGGATGTGTGCAGGAAATAGAGTGAATTGCA-AGTAACACAGAT-AAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACA-C-AATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAA</genome_strand>
        <mrna_strand>CAAAAGCAGCACAACTCTCCAAAGAGATTGATAG............................................................................................CTTACCGGATATAATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTTACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA...............................................................................................................................................................................................................................................................ATTTGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTCCGTAAATTAAAG..........................................................................................GGATGTTGCACCCTTGCAAGAGATCGGTTTAAAAGCCTTGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAGAGTTCATTGCAGAGTAACACAGATAAAATGTTTTCATCACCGCCATATGAGACCATCATCCCGAGCACTTGGATGAGAGACACTCTAGACAGCAAGGTCTTGGTTTATATCTGCAAATTTGGAGTGGGAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGATATGTAGATCTGTTTGTCTTACTGAT--ACATGGTTTATTACACCAAATATTTTATAGTCATAGTCAATTTGCTTTGGGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244300" ref_strand="+" ref_description="SGN-E244300 [cLEF-37-I7](-)">
      <seq>aaaagaaaaactaaaatcttgtccgccacgcttgggaaagcgcaaattcgtgcctgctcctgctcaggttttactgtctgaagagattactggttccatgcgtaaattaaagggatgttgcacccttgcaagagatcgatttaaaagcctggacaaaaggggactagttgttccttcaaaaaagagtagcaggagatagagtgaattgcaagtaacacagataaatgttttcatcgccgcactatgagaccatcatcccgatcacctggatgagagacactgtagacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggctgctctgactgttagcaaaatggagatgtagatctgtttatctgactgatgcatatggttcattacccaatattttatagtcatggtctagttactttgggagcaaaagtgataattaattactgatgtatctggaggcagaagattggtgtaatttctcttgatgaaccaggattgaatcccagagtcagccgaaaatttgtttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="26034" stop="143227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26334" g_stop="26378" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26634" g_stop="26700" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="112" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26791" g_stop="26870" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="192" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27409" g_stop="27766" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="550" r_length="358" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E244300" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26334" e_stop="26378"/>
          <exon e_start="26634" e_stop="26700"/>
          <exon e_start="26791" e_stop="26870"/>
          <exon e_start="27409" e_stop="27766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAAGTATGTACTGTTTCATTTTGAAGTAAAAAATTTCAACAATTGATTTGCTGAGAAAAAGTGTTTTCATAGAACATCAGATTTTAAAGGGATTTTTATGGTTATAACTCTTTTAAAAATGTTTCAACTGGGAGCTTGGGGTTTCAAAGAATGATGATTGCATGAGCTGAGCAATGAGACTCATTTTCTTGTGGTTTTGGTTTTTTCCTGCTATAACTTCAGTGTTGACAAAAAGATAATTGACCTATGTGATTTCAGATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAGGTTGCATTCCTGATTTCAATTTTCTCCAAATTGGCTGTCTGTATTTTCAAATTTTTTCTCTTATGTTATTTGTCTTCCTGTTTCAAACAGGGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAGGTTAGTAAAGATTGCTTCTTGTTTGAAATTAAGCCACACTTTCTGGTTTTGGCTTGCTTATTATTTGAAACTAAAAGTATTGCATGCTGTCTTGAAGTGTGTGTGAACCATGTGACACTGAGACAATTGCGGAGTAATCTCTTTTTCTTTAAAGTTTTTGACAGTGAGCTTTGTGCACGTTCCTAATGGCATCATAGTTGATCATAAATTTTGACAATACACCTTGCGGCTAACAAGATGTGAGGAAAATCACCAAAAATTGTTACCAATCGTTTGGGATCAAAAACTAGTATTTTGATAGTGAGCGTCATGTTCCTGATTCGCTATAATTGGAAATTCTGTCATTTCAATGTAACATTAAAGCTTGTGTTTGTGATAACAAATGCTTAAACTTCCCCTGCTTTTGGTTTCAACTTTCAATTAACGGAACTCATCTTTTCTCTGCATGTATCGAGCCATTATATACACTGTTTCAAAAGAAACATTCAGAGTATCAAAACATCTCTTGCTAATTGTTTCTGGTATGGGATGTGTGCAGGAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAA</genome_strand>
        <mrna_strand>AAAAGAAAAACTAAAATCTTGTCCGCCACGCTTGGGAAAGCGCAA...............................................................................................................................................................................................................................................................ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCATGCGTAAATTAAAG..........................................................................................GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGACAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCGCCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTGACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTGACTGATGCATATGGTTCATTACCCAATATTTTATAGTCATGGTCTAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTAATTTCTCTTGATGAACCAGGATTGAATCCCAGAGTCAGCCGAAAATTTGTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315966" ref_strand="-" ref_description="SGN-E315966 [cTOA-26-J18]">
      <seq>atttaaaagcntggagaaaaggggactagttgttccttcaaaaaagagtagcaggaaatagagtgaattgcaagtaacacagataaatgtttcatcaccgcactatgagaccatcatcccgatcacctggatgagagacactgtagacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggctgctcttactgttagcaaaatggagatgtagatctgtttatcttactgatgcatatggttcattacacaatattttatagtcatggtcaagttactttgggagcaaaagtgataattaattactgatgtatctggaggcagaagattggtgtgatttctcttgatgaaccagaaatgattcccagagtcagccttttttaaattttaaaatgggaactctcataatcaatatgtaccccaaagtttttaattactctaattaggtcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="26517" stop="28118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26817" g_stop="26870" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27409" g_stop="27820" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="465" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E315966" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315966" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26817" e_stop="26870"/>
          <exon e_start="27409" e_stop="27820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAGGTTAGTAAAGATTGCTTCTTGTTTGAAATTAAGCCACACTTTCTGGTTTTGGCTTGCTTATTATTTGAAACTAAAAGTATTGCATGCTGTCTTGAAGTGTGTGTGAACCATGTGACACTGAGACAATTGCGGAGTAATCTCTTTTTCTTTAAAGTTTTTGACAGTGAGCTTTGTGCACGTTCCTAATGGCATCATAGTTGATCATAAATTTTGACAATACACCTTGCGGCTAACAAGATGTGAGGAAAATCACCAAAAATTGTTACCAATCGTTTGGGATCAAAAACTAGTATTTTGATAGTGAGCGTCATGTTCCTGATTCGCTATAATTGGAAATTCTGTCATTTCAATGTAACATTAAAGCTTGTGTTTGTGATAACAAATGCTTAAACTTCCCCTGCTTTTGGTTTCAACTTTCAATTAACGGAACTCATCTTTTCTCTGCATGTATCGAGCCATTATATACACTGTTTCAAAAGAAACATTCAGAGTATCAAAACATCTCTTGCTAATTGTTTCTGGTATGGGATGTGTGCAGGAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACT</genome_strand>
        <mrna_strand>ATTTAAAAGCNTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAGAGTGAATTGCAAGTAACACAGATAAATG-TTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350242" ref_strand="+" ref_description="SGN-E350242 [cTOS-4-H9]">
      <seq>acagataaatgttttcatcaccgcactatgagaccatcatcccgatcacctggatgagagacactgtacacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggctgctcttactgttagcaaaatggagatgtagatctgtttatcttactgatgcgtatggttcattacacaatattttatagtcatggtcaagttactttgggagcaaaagtgataattaattactgatgtatctggaggcataagattggtgtgatttctcttgatgaaccagaaatgattcccagagtcagccttttttaaattttaaaatgggaactctcataatcaatatgtaccccaaagtttttaattactctaattacgtcaactttttatttgatcacattagactcactatatatcaccaatttttgatttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="27133" stop="28173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27433" g_stop="27879" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E350242" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27433" e_stop="27879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCA-CAAATTTTGATTTTCAAGACTTGAA</genome_strand>
        <mrna_strand>ACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTACACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCGTATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCATAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTACGTCAACTTTTTATTTGATCACATTAGACTCACTATATATCACCAATTTTTGATTTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355478" ref_strand="+" ref_description="SGN-E355478 [cTOS-25-I7]">
      <seq>acagataaatgttttcatcaccgcactatgagaccatcatcccgattcacctggatgagagacactgtagacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggcttgctcttactgttagcaaaatggagatgtagatctgtttatcttactgatgcgtatggttcattacacaatattttatagtcatggtcaagttactttgggagcaaaagtgataattaattactgatgtatctggaggcagaagattggtgtgatttctcttgatgaaccagaaatgattcccagagtcagccttttttaaattttaaaatgggaactctcataatcaatatgtaccccaaagtttttaattactctaattaggtcaactttttatttgatcacattagatcaactatatatcacaaattttgattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="27133" stop="28173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27433" g_stop="27879" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E355478" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27433" e_stop="27879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGA-TCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGC-TGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAA</genome_strand>
        <mrna_strand>ACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATTCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCGTATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357863" ref_strand="+" ref_description="SGN-E357863 [cTOS-24-B3]">
      <seq>acagataaatgttttcatcaccgcactatgagaccatcatcccgatcacctggatgagagacactgtagacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggctgctcttactgttagcaaaatggagatgtagatctgtttatcttactgatgcgtatggttcattacacaatattttatagtcatggtcaagttactttgggagcaaaagtgataattaattactgatgtatctggaggcagaagattggtgtgatttctcttgatgaaccagaaatgattcccagagtcagccttttttaaattttaaaatgggaactctcataatcaatatgtaccccaaagtttttaattactctaattaggtcaactttttatttgatcacattagatcaactatatatcacaaattttgattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="27133" stop="28173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27433" g_stop="27879" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E357863" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27433" e_stop="27879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAA</genome_strand>
        <mrna_strand>ACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCGTATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244087" ref_strand="+" ref_description="SGN-E244087 [cLEE-1-A5](-)">
      <seq>taaatgttttcatcaccgcactatgagaccatcatcccgatcacctggatgagagacactgtagacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggctgctcttactgttagcaaaatggagatgtagatctgtttatcttactgatgcatatggttcattacacaatattttatagtcatggtcaagttactttgggagcaaaagtgataattaattactgatgtatctggaggcagaagattggtgtgatttctcttgatgaaccagaaatgattcccagagtcagccttttttaaattttaaaatgggaactctcataatcaatatgtaccccaaagtttttaattactctaattaggtcaactttttatttgatcacattagatcaactatatatcacaaattttgattttcaagacttgaaagacaacattttctactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="27138" stop="28197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27438" g_stop="27896" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="475"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E244087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27438" e_stop="27896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</genome_strand>
        <mrna_strand>TAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244086" ref_strand="+" ref_description="SGN-E244086 [cLEE-1-A5]">
      <seq>aaatgttttcatcaccgcactatgagaccatcatcccgatcacctggatgagagacactgtagacagcaaggtgttggtttatgtctgcaaatttggagtggtagagctggctgctcttactgttagcaaaatggagatgtagatctgtttatcttactgatgcatatggttcattacacaatattttatagtcatggtcaagttactttgggagcaaaagtgataattaattactgatgtatctggaggcagaagattggtgtgatttctcttgatgaaccagaaatgattcccagagtcagccttttttaaattttaaaatgggaactctcataatcaatatgtaccccaaagtttttaattactctaattaggtcaactttttatttgatcacattagatcaactatatatcacaaattttgattttcaagacttgaaagacaacattttctactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="27139" stop="28197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27439" g_stop="27896" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="468"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E244086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27439" e_stop="27896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</genome_strand>
        <mrna_strand>AAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396259" ref_strand="+" ref_description="SGN-E396259 [TUS-40-B7](-)">
      <seq>tttgttaaagttgaagtcaataaatggtgttgtgaatggagttaacatagtggataatatgttttttggatcaaataaagggattgatattgttcaattggatcaaagtaatggaccatttaagacaattgaacaagttgtggtggatagaaataatgttaaggggatgaatctcaagggcacaattggaagtggagttgttgaagggaatggtacatcatggactatggattttaatccaattcttgtatttcctaaccttattaaacatgttcagtacacgtttttccctagcgggaacgtgttcgttaatcatgctttgagaaatatatcgaataataaggttatcgttgaatctaacgttcaagttccagcaagggttctcgtgacggtggatcaagggaaatgagcttatttgagctaacaaaaattagggatttatctagctagttattatgttacaaaggtgattaggtctctttgaatcattcttgaaaaaagaaatgtttatgtttaagaaaaattcaaaaagtataatccagcaatacaaggaatgctttttgattggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="43476" stop="42307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43176" g_stop="42608" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E396259" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43176" e_stop="42608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTT-AAGTTGAAGTCAATAAATGGTGTTGTGAATGGAGTTAACATAGTGGATAATATGTTTTCTGGATCAAATAAAGGGATTGATATTGTTCAATTGGATCAAAGTAATGGACCATTTAAGACAATTGAACAAGTTGTGGTGGATAGAAATAATGTTAAGGGGATGAATCTCAAGGGCACAATTGGAAGTGGAGTTGTTGAAGGGAATGGTACATCATGGACTATGGATTTTAATCCAATTCTTGTATTTCCTAACCTTATTAAACATGTTCAGTACACGTTTTTCCCTAGCGGGAACGTGTTCGTTAATCATGCTTTGAGAAATATATCGAATAATAAGGTTATCGTTGAATCTAACGTTCAAGTTCCAGCAAGGGTTCTCGTGACGGTGGATCAAGGGAAATGAGCTTATTTGAGCTAACAAAAATTAGGGATTTATCTAGCTAGTTATTATGTTACAAAGGTGATTAGGTCTCTTTGAATCATTCTTGAAAAAAGAAATGTTTATGTTTAAGAAAAATTCAAAAAGTATAATCCAGCAATACAAGGAATGCTTTTTGATTGGCA</genome_strand>
        <mrna_strand>TTTGTTAAAGTTGAAGTCAATAAATGGTGTTGTGAATGGAGTTAACATAGTGGATAATATGTTTTTTGGATCAAATAAAGGGATTGATATTGTTCAATTGGATCAAAGTAATGGACCATTTAAGACAATTGAACAAGTTGTGGTGGATAGAAATAATGTTAAGGGGATGAATCTCAAGGGCACAATTGGAAGTGGAGTTGTTGAAGGGAATGGTACATCATGGACTATGGATTTTAATCCAATTCTTGTATTTCCTAACCTTATTAAACATGTTCAGTACACGTTTTTCCCTAGCGGGAACGTGTTCGTTAATCATGCTTTGAGAAATATATCGAATAATAAGGTTATCGTTGAATCTAACGTTCAAGTTCCAGCAAGGGTTCTCGTGACGGTGGATCAAGGGAAATGAGCTTATTTGAGCTAACAAAAATTAGGGATTTATCTAGCTAGTTATTATGTTACAAAGGTGATTAGGTCTCTTTGAATCATTCTTGAAAAAAGAAATGTTTATGTTTAAGAAAAATTCAAAAAGTATAATCCAGCAATACAAGGAATGCTTTTTGATTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222117" ref_strand="+" ref_description="SGN-E222117 [cLEL-36-G4](-)">
      <seq>taatggaccatttaagacaattgaacaagttgtggtggatagaaataatgttaaggggatgaatctcaagggcacaattggaagtggagttgttgaagggaatggtacatcatggactatggattttaatccaattcttgtagttcctaaccttattaaacatgttcagtacacgtttttccctagcgggaacgtgttcgttaatcatgctttgagaaatatatcgaataataaggttatcgttgaatctaacgttcaagttccagcaagggttctcgtgacggtggatcaagggaaatgagcctatttgagctaacaaaaattagggatttatctagctagttattatgttacaaaggtgattaggtctctttgaatcattcttgaaaaaagaaatgtttatgtttaagaaaaattccaatagtataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="43369" stop="42341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43069" g_stop="42626" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E222117" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43069" e_stop="42626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGACCATTTAAGACAATTGAACAAGTTGTGGTGGATAGAAATAATGTTAAGGGGATGAATCTCAAGGGCACAATTGGAAGTGGAGTTGTTGAAGGGAATGGTACATCATGGACTATGGATTTTAATCCAATTCTTGTATTTCCTAACCTTATTAAACATGTTCAGTACACGTTTTTCCCTAGCGGGAACGTGTTCGTTAATCATGCTTTGAGAAATATATCGAATAATAAGGTTATCGTTGAATCTAACGTTCAAGTTCCAGCAAGGGTTCTCGTGACGGTGGATCAAGGGAAATGAGCTTATTTGAGCTAACAAAAATTAGGGATTTATCTAGCTAGTTATTATGTTACAAAGGTGATTAGGTCTCTTTGAATCATTCTTGAAAAAAGAAATGTTTATGTTTAAGAAAAATTCAAAAAGTATAATCCAGCAATACAAGG</genome_strand>
        <mrna_strand>TAATGGACCATTTAAGACAATTGAACAAGTTGTGGTGGATAGAAATAATGTTAAGGGGATGAATCTCAAGGGCACAATTGGAAGTGGAGTTGTTGAAGGGAATGGTACATCATGGACTATGGATTTTAATCCAATTCTTGTAGTTCCTAACCTTATTAAACATGTTCAGTACACGTTTTTCCCTAGCGGGAACGTGTTCGTTAATCATGCTTTGAGAAATATATCGAATAATAAGGTTATCGTTGAATCTAACGTTCAAGTTCCAGCAAGGGTTCTCGTGACGGTGGATCAAGGGAAATGAGCCTATTTGAGCTAACAAAAATTAGGGATTTATCTAGCTAGTTATTATGTTACAAAGGTGATTAGGTCTCTTTGAATCATTCTTGAAAAAAGAAATGTTTATGTTTAAGAAAAATTCCAATAGTATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390510" ref_strand="+" ref_description="SGN-E390510 [TUS-40-B7]">
      <seq>tttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagaggaggcggtatacaagtgataaattcactaagaacaagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatgaaacatacattagaaattcatttcttggacaacatatcactgctggtggtgataaaggggagaggaatttctccggcaccgcgataaatctagcgggaaatgataattctgttactgatgtagtgatattctcagctgaaattggtgtaattgtatcaggtcaagcaaatttgttatcaggtatacattgttacaataaggctacaggatttggtgggactggaatttacttaaaactccctggtttaacacaaacaaggattgtggattcttatttggattacactggaattgtggcagaggatcctgttcaactcacaatttcaaacacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44376" stop="42892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44076" g_stop="44025" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43192" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="631" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E390510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44076" e_stop="44025"/>
          <exon e_start="43770" e_stop="43192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCTGGTTTAACACAAACAAGGATTGTGGATTCTTATTTGGATTACACTGGAATTGTGGCAGAGGATCCTGTTCAACTCACAATTTCAAACACATTT</genome_strand>
        <mrna_strand>TTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCTGGTTTAACACAAACAAGGATTGTGGATTCTTATTTGGATTACACTGGAATTGTGGCAGAGGATCCTGTTCAACTCACAATTTCAAACACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323387" ref_strand="+" ref_description="SGN-E323387 [cTOC-10-M5]">
      <seq>ttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagaggaggcggtatacaagtgataaattcactaagaacaagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatgaaacatacattagaaattcatttcttggacaacatatcactgctggtggtgataaaggggagaggaatttctccggcaccgcgataaatctagcgggaaatgataattctgttactgatgtagtgatattctcagctgaaattggtgtaattgtatcaggtcaagcaaatttgttatcaggtatacattgttacaataaggctacaggatttggtgggactggaatttacttaaaactccctggtttaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44375" stop="42975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44075" g_stop="44025" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43275" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="547" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E323387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44075" e_stop="44025"/>
          <exon e_start="43770" e_stop="43275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCTGGTTTAACAC</genome_strand>
        <mrna_strand>TTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCTGGTTTAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319958" ref_strand="+" ref_description="SGN-E319958 [cTOB-31-I15]">
      <seq>tatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagaggaggcggtatacaagtgataaattcactaagaacaagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatgaaacatacattagaaattcatttcttggacaacatatcactgctggtggtgataaaggggagaggaatttctccggcaccgcgataaatctagcgggaaatgataattctgttactgatgtagtgatattctcagctgaaattggtgtaattgtatcaggtcaagcaaatttgttatcaggtatacattgttacaataaggctacacgatttggtgggactggaatttacttaaaactccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44540" stop="42985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44240" g_stop="44025" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43285" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="702" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E319958" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44240" e_stop="44025"/>
          <exon e_start="43770" e_stop="43285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCT</genome_strand>
        <mrna_strand>TATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACACGATTTGGTGGGACTGGAATTTACTTAAAACTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320247" ref_strand="+" ref_description="SGN-E320247 [cTOB-21-O4]">
      <seq>aaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagaggaggcggtatacaagtgataaattcactaagaacaagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatgaaacatacattagaaattcatttcttggacaacatatcactgctggtggtgataaaggggagaggaatttctccggcaccgcgataaatctagcgggaaatgataattctgttactgatgtagtgatattctcagctgaaattggtgtaattgtatcaggtcaagcaaatttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44547" stop="43051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44247" g_stop="44025" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43351" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="643" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E320247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44247" e_stop="44025"/>
          <exon e_start="43770" e_stop="43351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTA</genome_strand>
        <mrna_strand>AAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687979" ref_strand="+" ref_description="SGN-E687979 [T3_tus_81_O13]">
      <seq>ggcaaacagcatgggagaaaaaacatgggctttgtccttgttttttatctttgcttgtctatccnatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgtaagtctttttaacttttttcctcaatttatgttaaacgtatcgtaaattacctattttatgtattatattaggttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagaggaggcggtatacaagtgataaattcactaagaacaagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatgaaacatacattagaaattcatttcttggacaacatatcactgctggtgttgataaaggggagaggaatttctccggcaccgcgataaatctagcgagaaatgataattctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44852" stop="43110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44552" g_stop="44025" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43410" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="889" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E687979" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44552" e_stop="44025"/>
          <exon e_start="43770" e_stop="43410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAACAGCATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTG</genome_strand>
        <mrna_strand>GGCAAACAGCATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCNATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGTTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGAGAAATGATAATTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320013" ref_strand="+" ref_description="SGN-E320013 [cTOB-31-O5]">
      <seq>aaaaaacatgggctttgtccttgttttttatctttgcttgtctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagaggaggcggtatacaagtgataaattcactaagaacaagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatgaaacatacattagaaattcatttcttggacacatatcactgctggtggtgataaaggggagaggaatttctccggcaccgcgataatctagcgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44835" stop="43128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44535" g_stop="44336" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44261" g_stop="44025" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="437" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43428" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="778" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E320013" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44535" e_stop="44336"/>
          <exon e_start="44261" e_stop="44025"/>
          <exon e_start="43770" e_stop="43428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAA</genome_strand>
        <mrna_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACT..........................................................................GTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGAC-ACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGAT-AATCTAGCGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322966" ref_strand="+" ref_description="SGN-E322966 [cTOB-30-F1]">
      <seq>aaaaaacatgggctttgtccttgttttttatctttgcttgtctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagagggagcggtatacaagtgantaattcactaagaacnagcattgacaattgttacatcacacatttcacaacaaatggtatcatagcccaaggtggacatgaaacatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44835" stop="43216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44535" g_stop="44336" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44261" g_stop="44025" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="437" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43516" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="692" r_length="255" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E322966" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44535" e_stop="44336"/>
          <exon e_start="44261" e_stop="44025"/>
          <exon e_start="43770" e_stop="43516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATT</genome_strand>
        <mrna_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACT..........................................................................GTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGGAGCGGTATACAAGTGANTAATTCACTAAGAACNAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCCAAGGTGGACATGAAACATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328579" ref_strand="+" ref_description="SGN-E328579 [cTOC-23-F21]">
      <seq>gcaaacagcatgggagaaaaaacatgggctttgtccttgttttttatctttgcttgtctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgtaagtctttttaacttttttcctcaatttatgttaaacgtatcgtaaattacctattttatgtattatattaggttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcaaatttcagaggnagcggtatacaagtgataaattcactaagaacnagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatgaaacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44851" stop="43218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44551" g_stop="44025" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43770" g_stop="43518" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="780" r_length="253" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E328579" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44551" e_stop="44025"/>
          <exon e_start="43770" e_stop="43518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAGCATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACA</genome_strand>
        <mrna_strand>GCAAACAGCATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGNAGCGGTATACAAGTGATAAATTCACTAAGAACNAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687699" ref_strand="+" ref_description="SGN-E687699 [T3_tus_79_I02]">
      <seq>ccttaaaaaaatgggctttgtccttgttttttatctttgcttttctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataactttaaaagatttattacttgatgcaaatttcaaaggaggcggtatacaagtgataaattcactaaaaacaagcattgacaattgttacatcacacatttcacaacaaatggtatcatagccaaaggtggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44835" stop="43227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44538" g_stop="44336" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44261" g_stop="44025" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="440" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43527" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="684" r_length="244" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E687699" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44538" e_stop="44336"/>
          <exon e_start="44261" e_stop="44025"/>
          <exon e_start="43770" e_stop="43527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATG</genome_strand>
        <mrna_strand>CCTTAAAAAAATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTTTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACT..........................................................................GTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAAAGATTTATTACTTGATGCAAATTTCAAAGGAGGCGGTATACAAGTGATAAATTCACTAAAAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323141" ref_strand="+" ref_description="SGN-E323141 [cTOB-28-P7]">
      <seq>aaaaaacatgggctttgtccttgttttttatctttgcttgtctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacgggtcctgagtttttattcgaattcataactttaagagatttattacttgatgcnaatttcagaggaagcggtatacaagtgataaattcactaagaacaagcattgacaattgttacatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44835" stop="43267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44535" g_stop="44336" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44261" g_stop="44025" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="437" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43567" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="642" r_length="205" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E323141" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44535" e_stop="44336"/>
          <exon e_start="44261" e_stop="44025"/>
          <exon e_start="43770" e_stop="43567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAAC-GGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACA</genome_strand>
        <mrna_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACT..........................................................................GTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCNAATTTCAGAGGAAGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622910" ref_strand="+" ref_description="SGN-E622910 [73282]">
      <seq>ttacatagaaggcaacaacatgggagaaaaaacatgggctttgtccttgttttttatttttgcttgtctatcccatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgttcatcgcgattcgatttctccttttccttctccttctcctactagattttctccatcaccatcatcaccatcagtaataacagttacaccaagtccaaaaatatatcatataacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctgttgttagccgtggcaatctcatgattcatggaggaacactaaaagcttcagatgattttccaacagatggatatttactcgatttatcgacatcttcaagcaatgctcctgagttttattcgaaattcataacgtttagagacttattacttgatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44863" stop="43333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44562" g_stop="44336" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44261" g_stop="44025" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="463" r_length="237" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43633" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="601" r_length="138" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E622910" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44562" e_stop="44336"/>
          <exon e_start="44261" e_stop="44025"/>
          <exon e_start="43770" e_stop="43633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATAGAAGGCAAACAGCATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCG-AATTCATAACTTTAAGAGATTTATTACTTGATGCAAAT</genome_strand>
        <mrna_strand>TTACATAGAAGGC-AACAACATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATTTTTGCTTGTCTATCCCATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGTTCATCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCACCATCATCACCATCAGTAATAACA..........................................................................GTTACACCAAGTCCAAAAATATATCATATAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTGTTGTTAGCCGTGGCAATCTCATG..............................................................................................................................................................................................................................................................ATTCATGGAGGAACACTAAAAGCTTCAGATGATTTTCCAACAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAATGCTCCTGAG-TTTTATTCGAAATTCATAACGTTTAGAGACTTATTACTTGATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322457" ref_strand="+" ref_description="SGN-E322457 [cTOB-26-O15]">
      <seq>aaaaaacatgggctttgtccttgttttttatctttgcttgtctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatcttcaagcaacggtcctgagtttttattcgaattcataancttaagagatttattacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44835" stop="43339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44535" g_stop="44336" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44261" g_stop="44025" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="437" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43639" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="569" r_length="132" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E322457" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44535" e_stop="44336"/>
          <exon e_start="44261" e_stop="44025"/>
          <exon e_start="43770" e_stop="43639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGAT</genome_strand>
        <mrna_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACT..........................................................................GTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAANCTTAAGAGATTTATTACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324258" ref_strand="+" ref_description="SGN-E324258 [cTOC-4-G8]">
      <seq>aaaaaacatgggctttgtccttgttttttatctttgcttgggtatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctccaactggaaaattagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttgaaggtggaaattatttaattagccaaccattacaattccctattgttagccgtggcaatctaatgattcatggaggtaccctaaaagcttcagatgattttccaagagatggatatttactcgatttatcgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44835" stop="43400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44535" g_stop="44382" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44381" i_stop="44215" i_length="167">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44214" g_stop="44025" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="344" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43770" g_stop="43700" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="415" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E324258" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44535" e_stop="44382"/>
          <exon e_start="44214" e_stop="44025"/>
          <exon e_start="43770" e_stop="43700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATGGTACGTTCTGTTATAACACGTTAAATTATACTGACTCATCAATAAATAATAGAATGGTTACATGTCTTCCTTTGATTCTTTTCTATTCTTTTTTTTTGGGGTCAAATCTCTTGACTTGACCTTTTTGAAATATAGAAAAGTAAAATTAATTTTTTTTTCTCATGTAATCTCAAGACTTTTTAACTTACATTTCTAAAATTTCTACCTAGTTAGTTATTTTAATTACGATATTACCCCTCCATTTTATGAAACAGATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATC</genome_strand>
        <mrna_strand>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGGGTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTC.......................................................................................................................................................................TCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG..............................................................................................................................................................................................................................................................ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324976" ref_strand="+" ref_description="SGN-E324976 [cTOC-11-B16]">
      <seq>tgggagaaaaaacatgggctttgtccttgtttgttatctgggcttgtctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagattttctccatcgccatcatcaccatcagtaataactgttacaccaagtccaaaagtatatcatgtaacatcatatggtgctgatccaactggaaaatcagatagcacacaagctattctacaagcaatttctgatgcacttgaaggtccatctaatggtttcttaatgcaaggaatttcaaatcttggtggtgctcaaattaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44841" stop="43790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44541" g_stop="44336" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44261" g_stop="44090" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="378" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E324976" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44541" e_stop="44336"/>
          <exon e_start="44261" e_stop="44090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTG</genome_strand>
        <mrna_strand>TGGGAGAAAAAACATGGGCTTTGTCCTTGTTTGTTATCTGGGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACT..........................................................................GTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATCAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324886" ref_strand="+" ref_description="SGN-E324886 [cTOC-11-B6]">
      <seq>tgggagaaaaaacatgggctttgtccttgttggttatctgggcttgtctatccaatgtttatggaaatgttcattcatatgatcatcaattgaggaaattacaagcttttacagctgaaattgctagtcgcgattcgatttctccttttccttctccttctcctactagatattctccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="44841" stop="44061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44541" g_stop="44361" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E324886" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44541" e_stop="44361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATC</genome_strand>
        <mrna_strand>TGGGAGAAAAAACATGGGCTTTGTCCTTGTTGGTTATCTGGGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATATTCTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354418" ref_strand="+" ref_description="SGN-E354418 [cTOS-17-B11]">
      <seq>gagaagataatgcgattgtttcagtacttgagtcaatggaaatccaaagccaatgacggaattcaacaatcacttcttatcgccaaattcctctgcttattacatgtcacaagcaactacgttttctctccagtaatggttccaaaggggcatgtttggattcaaggagataacatctatgcttcaaaggattcacgacagctcgggccaatcccttgtggccttatctcgggaaaagtgttatacagagtatggcctccagagtgttttggttcattatgaccacaaaaacaatgtattgtactgaagatatacaattaaaatgagaaatgtgattctttactagtccttattacctaattctaaataatgattgttaatttattttggtaaggatgctttaccatgaatttgatttttttgtacatttgcaatatttaaggtatgaaatcaagaaaaatgttgagagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="56668" stop="52781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56368" g_stop="56231" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56230" i_stop="53879" i_length="2352">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53878" g_stop="53768" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="249" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53767" i_stop="53307" i_length="461">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53306" g_stop="53084" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="472" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="486"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E354418" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56368" e_stop="56231"/>
          <exon e_start="53878" e_stop="53768"/>
          <exon e_start="53306" e_stop="53084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGATAATGCGATTGTTTCAGTACTTGAGTCAATGGAAATCCAAAGCCAATGACGGAATTCAACAATCACTTCTTATCGCCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATGGTACGTATTTTCTCCATTTTATCTGCAATTTTACCGCTAAGAAATTAGGTTATGCGGATAAAATTTTTCTACTGTTTTAGGTGTACGGTCCGAGCATGTTGCCGACCCTGAATCTTACCGGTGATGTTTTGCTGGTTGAACATTTGTCGCCGTTGTTCGATAAGTTGGGACCTGGAGATGTAATCCTTGTTCGGTCACCTGATAACCCTAGGAAGACTGTAACTAAACGAATTATTGGCATGGAGGGTGATACTGTCACTTTTCTAGCTGACCCTTCAAAAAGTGACCGGTATATTAGCTTAAAGGTGTGTTCTTTTCTTTAGTGTAATTTTGCCCTTTTTCCATTCTTGGATTGATTGTTGATTGTTGTTAGGTGAGGAGCCATAGCCTCAAACAATGTGTTCCTTTTGTTGGCTAAGTATATGACCATATGTGGGCTAGCATGAGTTATTGTTGTAATGAAGAAGTCTAGGAAGGCTTAAAGAAGAATGTGCTAGGATTAACCCCTTTATAGATAGGGTGAGCAAGGAGGTTCTAAACAGAAATGTCCTAGGATTTAGCCCCTTTAGAGATAGTGGCAAGTCAGGAGTTTTAGACAAAAATGTCCTAAGATTAGCCCCTTTAGAGATAGGGGTGAGTTACTAGCTTGTAAACGAAAATATGCTAGGATTAGCCTTTTTAGAGATAGGGGCGAGTCAGGAGCTTTTAAACAAAAATGTCCTAGCATTGAGCCCCTTTAGAAATAGTGGTGAGTCAGGAGCTTTTAGACAAAAATTGTCCTAGGATTAGCCCCTTGAGAGATAGGGGCGAGTTAGGAGCTTTTAAACAAAAATGTGCTAGGATTAACCCCTTTAGAGAAAGGGGCGAGTCAGGAGCTTTTAAATAAAAATGTGCTAGGATAGCCCTCTAGAGATAAGGGTGAGCCAGGTGCTTACTGTGGGTATTTATGACTCTGGTGGCAGCACGTGACAGTCGAATAACATGATTCTCAAGGAGTTACATGACTGCCAAGCCAATTCTTTTAAGACTTGTGGCTGCTTTAATTTCTATTGTTGATGATTTTCTATTAACTATAGTCCAGTTTTGTCATTGGTCTGTAGATTCACTGTTTTTATCTTCCTAGTGCTCTCTGTCTTTTCTCTTTCCTTATAGATGCAAACCTCTTGTTCTTCATTAGATTTCACCTTAGTTAGAGATAACAGACAGTTGCTAGTTTCTGCAGTGAATGCTTTAAATTCTTGGAGTCCCTTTACTTCATTAAGCAAATGAGAGAAAAAGTTGTATCTTTCAATCTTTGGACTTCCTAGTTTTCCACCCTTTCATAGAAACCACACATGGGATAAAACAAAAGGAGGTCACATTAGATGGTTTGACCTATATAGACCAATAAATTTGTTTGTCAGTGGTTCGGACTCTAGGATGGTTTAGTGTTAAAAGATAACATTGGTAGATTTAAAATCCAATGGAGTGAAGTTGTTTCAAAAGACCAACTATTTGTCCGAAGCTAGTTAAGAAGATACTTTAATGGAAACACTGAATCCTAACTAGTTTAGCATTGAGGTATAGTTGTTGTAAAGAGAACTGCATATGACCAAAAACATCCACTAATTGCTTGGGAAGTACTCTTAATTCTTGCTGAGTAATGGACCTTACTGTCTTCTTTAATATTTGTAATTGCCAGGACCTAGGATATTGTGGTGTCAATTCTCTTTAGAAACCTGAAATTTGGGCTCTGAACACAATGTTAGGCATGCCACCAAGCTTCCTTATGCTTACCCACTAAGGTTTTCTCTCTCATTGTTGTTTCCAGGCTCACCTTCAGTTTCTTATATCCAAGGTCTTATTATTTTGGCAGAGTATGTGAATCTATTTCGTTTGCCACATTTCATCTCAAAGTAAACGGGAAAATGAGAATCCAATTTTCTTTTTAATACCTGAGTAAACCCGAAGTGTGAGTAGTGCACAGTTCGAAACTCTGGACAATGGGCCTTGCCCTCTAATCTCTATATATAACTGAGGATTTTATTTGAAGCACTAAAGATGCTCTATTTTTTACTTTATTTAGATGTTGTATGCTTTTTAGTAGTTTCATTCTGATTTTCTGGAATACCACCTGAAATAGCAATTTGAAACTGGCTTGGAATTCTTTCTTGTGTTAATAAATATATTTCGTTAGAAGAGAAAAAGTTTATCCATCTTTGAGGTGACTATCCACTGCTTACGATGTGACTGAGGCGATACATGTTTTCTCATTCCATAATATACTGTAGTTTTATTTTTGATGCTTTATATTCTTATAGTTTCTTTGGTTTCTCCCATCCTTTTCAATTCTTTTCATGTGGGGTTATCTAGGTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGAGTAAGTTTCATTACCTTTACTGTCTTGAGTCATTCGAACCATCTTAATGAATCCTCAACTTCTTAAATGATTTTACCTCTGGGATGGATTAGCATCTAGGAATCGTGCTTTCCCTTAAAAGTTCAGTATACGACTAGAAAACTCTAGCCCATGGCTTAGGCAAGTTTACGCAGAACTCTGCTAACTCCAAGTCTAATATGCAATTGTAGTTCATCTGCCTTTACATCCTGAACAAGATAAGAGTCCATAACCATCATCTGCTTTGAAGTCTTTACATTTGATATTTGATGGTTGCTTACCTTTACTTAGAATGCTTCTTTATGCAAATTAATCGACTTACATCAACAATATTAATATCGATATTATGGTCATAGATACACAAATATTGGGGGTGGAGTAGCCATTTGAGAATCTCGTATATAGAAACTAATTAGCACCCTCTTGTGTTTTTGCATATGTAGGTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTAGTCCTTATTACCTAATTCTAAATAATGATTGTTAATTTATTTTGGTAAGGATGCTTTACCATGAATTTGATTTTTTTGTACATTTGCAATATTTAAGGTATGAAATCAAGAAAAATGTTGAGAGACA</genome_strand>
        <mrna_strand>GAGAAGATAATGCGATTGTTTCAGTACTTGAGTCAATGGAAATCCAAAGCCAATGACGGAATTCAACAATCACTTCTTATCGCCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTAGTCCTTATTACCTAATTCTAAATAATGATTGTTAATTTATTTTGGTAAGGATGCTTTACCATGAATTTGATTTTTTTGTACATTTGCAATATTTAAGGTATGAAATCAAGAAAAATGTTGAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357877" ref_strand="+" ref_description="SGN-E357877 [cTOS-24-F3]">
      <seq>gagaagataatgcgattgtttcagtacttgagtcaatggaaatccaaagccaatgacggaattcaacaatcacttcttatcgccaaattcctctgcttattacatgtcacaagcaactacgttttctctccagtaatggttccaaaggggcatgtttggattcaaggagataacatctatgcttcaaaggattcacgacagctcgggccaatcccttgtggccttatctcgggaaaagtgttatacagagtatggcctccagagtgttttggttcattatgaccacaaaaacaatgtattgtactgaagatatacaattaaaatgagaaatgtgattctttactagtccttattacctaattctaaataatgattgttaatttattttggtaaggatgctttaccatgaatttgatttttttgtacatttgcaatatttaaggtatgaaatcaagaaaaatgttgagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="56668" stop="52781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56368" g_stop="56231" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56230" i_stop="53879" i_length="2352">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53878" g_stop="53768" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="249" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53767" i_stop="53307" i_length="461">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53306" g_stop="53084" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="472" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="483"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E357877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56368" e_stop="56231"/>
          <exon e_start="53878" e_stop="53768"/>
          <exon e_start="53306" e_stop="53084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGATAATGCGATTGTTTCAGTACTTGAGTCAATGGAAATCCAAAGCCAATGACGGAATTCAACAATCACTTCTTATCGCCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATGGTACGTATTTTCTCCATTTTATCTGCAATTTTACCGCTAAGAAATTAGGTTATGCGGATAAAATTTTTCTACTGTTTTAGGTGTACGGTCCGAGCATGTTGCCGACCCTGAATCTTACCGGTGATGTTTTGCTGGTTGAACATTTGTCGCCGTTGTTCGATAAGTTGGGACCTGGAGATGTAATCCTTGTTCGGTCACCTGATAACCCTAGGAAGACTGTAACTAAACGAATTATTGGCATGGAGGGTGATACTGTCACTTTTCTAGCTGACCCTTCAAAAAGTGACCGGTATATTAGCTTAAAGGTGTGTTCTTTTCTTTAGTGTAATTTTGCCCTTTTTCCATTCTTGGATTGATTGTTGATTGTTGTTAGGTGAGGAGCCATAGCCTCAAACAATGTGTTCCTTTTGTTGGCTAAGTATATGACCATATGTGGGCTAGCATGAGTTATTGTTGTAATGAAGAAGTCTAGGAAGGCTTAAAGAAGAATGTGCTAGGATTAACCCCTTTATAGATAGGGTGAGCAAGGAGGTTCTAAACAGAAATGTCCTAGGATTTAGCCCCTTTAGAGATAGTGGCAAGTCAGGAGTTTTAGACAAAAATGTCCTAAGATTAGCCCCTTTAGAGATAGGGGTGAGTTACTAGCTTGTAAACGAAAATATGCTAGGATTAGCCTTTTTAGAGATAGGGGCGAGTCAGGAGCTTTTAAACAAAAATGTCCTAGCATTGAGCCCCTTTAGAAATAGTGGTGAGTCAGGAGCTTTTAGACAAAAATTGTCCTAGGATTAGCCCCTTGAGAGATAGGGGCGAGTTAGGAGCTTTTAAACAAAAATGTGCTAGGATTAACCCCTTTAGAGAAAGGGGCGAGTCAGGAGCTTTTAAATAAAAATGTGCTAGGATAGCCCTCTAGAGATAAGGGTGAGCCAGGTGCTTACTGTGGGTATTTATGACTCTGGTGGCAGCACGTGACAGTCGAATAACATGATTCTCAAGGAGTTACATGACTGCCAAGCCAATTCTTTTAAGACTTGTGGCTGCTTTAATTTCTATTGTTGATGATTTTCTATTAACTATAGTCCAGTTTTGTCATTGGTCTGTAGATTCACTGTTTTTATCTTCCTAGTGCTCTCTGTCTTTTCTCTTTCCTTATAGATGCAAACCTCTTGTTCTTCATTAGATTTCACCTTAGTTAGAGATAACAGACAGTTGCTAGTTTCTGCAGTGAATGCTTTAAATTCTTGGAGTCCCTTTACTTCATTAAGCAAATGAGAGAAAAAGTTGTATCTTTCAATCTTTGGACTTCCTAGTTTTCCACCCTTTCATAGAAACCACACATGGGATAAAACAAAAGGAGGTCACATTAGATGGTTTGACCTATATAGACCAATAAATTTGTTTGTCAGTGGTTCGGACTCTAGGATGGTTTAGTGTTAAAAGATAACATTGGTAGATTTAAAATCCAATGGAGTGAAGTTGTTTCAAAAGACCAACTATTTGTCCGAAGCTAGTTAAGAAGATACTTTAATGGAAACACTGAATCCTAACTAGTTTAGCATTGAGGTATAGTTGTTGTAAAGAGAACTGCATATGACCAAAAACATCCACTAATTGCTTGGGAAGTACTCTTAATTCTTGCTGAGTAATGGACCTTACTGTCTTCTTTAATATTTGTAATTGCCAGGACCTAGGATATTGTGGTGTCAATTCTCTTTAGAAACCTGAAATTTGGGCTCTGAACACAATGTTAGGCATGCCACCAAGCTTCCTTATGCTTACCCACTAAGGTTTTCTCTCTCATTGTTGTTTCCAGGCTCACCTTCAGTTTCTTATATCCAAGGTCTTATTATTTTGGCAGAGTATGTGAATCTATTTCGTTTGCCACATTTCATCTCAAAGTAAACGGGAAAATGAGAATCCAATTTTCTTTTTAATACCTGAGTAAACCCGAAGTGTGAGTAGTGCACAGTTCGAAACTCTGGACAATGGGCCTTGCCCTCTAATCTCTATATATAACTGAGGATTTTATTTGAAGCACTAAAGATGCTCTATTTTTTACTTTATTTAGATGTTGTATGCTTTTTAGTAGTTTCATTCTGATTTTCTGGAATACCACCTGAAATAGCAATTTGAAACTGGCTTGGAATTCTTTCTTGTGTTAATAAATATATTTCGTTAGAAGAGAAAAAGTTTATCCATCTTTGAGGTGACTATCCACTGCTTACGATGTGACTGAGGCGATACATGTTTTCTCATTCCATAATATACTGTAGTTTTATTTTTGATGCTTTATATTCTTATAGTTTCTTTGGTTTCTCCCATCCTTTTCAATTCTTTTCATGTGGGGTTATCTAGGTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGAGTAAGTTTCATTACCTTTACTGTCTTGAGTCATTCGAACCATCTTAATGAATCCTCAACTTCTTAAATGATTTTACCTCTGGGATGGATTAGCATCTAGGAATCGTGCTTTCCCTTAAAAGTTCAGTATACGACTAGAAAACTCTAGCCCATGGCTTAGGCAAGTTTACGCAGAACTCTGCTAACTCCAAGTCTAATATGCAATTGTAGTTCATCTGCCTTTACATCCTGAACAAGATAAGAGTCCATAACCATCATCTGCTTTGAAGTCTTTACATTTGATATTTGATGGTTGCTTACCTTTACTTAGAATGCTTCTTTATGCAAATTAATCGACTTACATCAACAATATTAATATCGATATTATGGTCATAGATACACAAATATTGGGGGTGGAGTAGCCATTTGAGAATCTCGTATATAGAAACTAATTAGCACCCTCTTGTGTTTTTGCATATGTAGGTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTAGTCCTTATTACCTAATTCTAAATAATGATTGTTAATTTATTTTGGTAAGGATGCTTTACCATGAATTTGATTTTTTTGTACATTTGCAATATTTAAGGTATGAAATCAAGAAAAATGTTGAGAGACA</genome_strand>
        <mrna_strand>GAGAAGATAATGCGATTGTTTCAGTACTTGAGTCAATGGAAATCCAAAGCCAATGACGGAATTCAACAATCACTTCTTATCGCCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTAGTCCTTATTACCTAATTCTAAATAATGATTGTTAATTTATTTTGGTAAGGATGCTTTACCATGAATTTGATTTTTTTGTACATTTGCAATATTTAAGGTATGAAATCAAGAAAAATGTTGAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356310" ref_strand="+" ref_description="SGN-E356310 [cTOS-20-O13]">
      <seq>gagaagataatgcgattgtttcagtacttgagtcaatggaaatccaaagccaatgacggaattcaacaatcacttcttatcgccaaattcctctgcttattacatgtcacaagcaactacgttttctctccagtaatggttccaaaggggcatgtttggattcaaggagataacatctatgcttcaaaggattcacgacagctcgggccaatcccttgtggccttatctcgggaaaagtgttatacagagtatggcctccagagtgttttggttcattatgaccacaaaaacaatgtattgtactgaagatatacaattaaaatgagaaatgtgattctttactagtccttattacctaattctaaataatgattgttaatttattttggtaaggatgctttaccatgaatttgatttttttgtacatttgcaatatttaaggtatgaaatcaagaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="56668" stop="52795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56368" g_stop="56231" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56230" i_stop="53879" i_length="2352">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53878" g_stop="53768" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="249" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53767" i_stop="53307" i_length="461">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53306" g_stop="53095" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="461" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E356310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56368" e_stop="56231"/>
          <exon e_start="53878" e_stop="53768"/>
          <exon e_start="53306" e_stop="53095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGATAATGCGATTGTTTCAGTACTTGAGTCAATGGAAATCCAAAGCCAATGACGGAATTCAACAATCACTTCTTATCGCCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATGGTACGTATTTTCTCCATTTTATCTGCAATTTTACCGCTAAGAAATTAGGTTATGCGGATAAAATTTTTCTACTGTTTTAGGTGTACGGTCCGAGCATGTTGCCGACCCTGAATCTTACCGGTGATGTTTTGCTGGTTGAACATTTGTCGCCGTTGTTCGATAAGTTGGGACCTGGAGATGTAATCCTTGTTCGGTCACCTGATAACCCTAGGAAGACTGTAACTAAACGAATTATTGGCATGGAGGGTGATACTGTCACTTTTCTAGCTGACCCTTCAAAAAGTGACCGGTATATTAGCTTAAAGGTGTGTTCTTTTCTTTAGTGTAATTTTGCCCTTTTTCCATTCTTGGATTGATTGTTGATTGTTGTTAGGTGAGGAGCCATAGCCTCAAACAATGTGTTCCTTTTGTTGGCTAAGTATATGACCATATGTGGGCTAGCATGAGTTATTGTTGTAATGAAGAAGTCTAGGAAGGCTTAAAGAAGAATGTGCTAGGATTAACCCCTTTATAGATAGGGTGAGCAAGGAGGTTCTAAACAGAAATGTCCTAGGATTTAGCCCCTTTAGAGATAGTGGCAAGTCAGGAGTTTTAGACAAAAATGTCCTAAGATTAGCCCCTTTAGAGATAGGGGTGAGTTACTAGCTTGTAAACGAAAATATGCTAGGATTAGCCTTTTTAGAGATAGGGGCGAGTCAGGAGCTTTTAAACAAAAATGTCCTAGCATTGAGCCCCTTTAGAAATAGTGGTGAGTCAGGAGCTTTTAGACAAAAATTGTCCTAGGATTAGCCCCTTGAGAGATAGGGGCGAGTTAGGAGCTTTTAAACAAAAATGTGCTAGGATTAACCCCTTTAGAGAAAGGGGCGAGTCAGGAGCTTTTAAATAAAAATGTGCTAGGATAGCCCTCTAGAGATAAGGGTGAGCCAGGTGCTTACTGTGGGTATTTATGACTCTGGTGGCAGCACGTGACAGTCGAATAACATGATTCTCAAGGAGTTACATGACTGCCAAGCCAATTCTTTTAAGACTTGTGGCTGCTTTAATTTCTATTGTTGATGATTTTCTATTAACTATAGTCCAGTTTTGTCATTGGTCTGTAGATTCACTGTTTTTATCTTCCTAGTGCTCTCTGTCTTTTCTCTTTCCTTATAGATGCAAACCTCTTGTTCTTCATTAGATTTCACCTTAGTTAGAGATAACAGACAGTTGCTAGTTTCTGCAGTGAATGCTTTAAATTCTTGGAGTCCCTTTACTTCATTAAGCAAATGAGAGAAAAAGTTGTATCTTTCAATCTTTGGACTTCCTAGTTTTCCACCCTTTCATAGAAACCACACATGGGATAAAACAAAAGGAGGTCACATTAGATGGTTTGACCTATATAGACCAATAAATTTGTTTGTCAGTGGTTCGGACTCTAGGATGGTTTAGTGTTAAAAGATAACATTGGTAGATTTAAAATCCAATGGAGTGAAGTTGTTTCAAAAGACCAACTATTTGTCCGAAGCTAGTTAAGAAGATACTTTAATGGAAACACTGAATCCTAACTAGTTTAGCATTGAGGTATAGTTGTTGTAAAGAGAACTGCATATGACCAAAAACATCCACTAATTGCTTGGGAAGTACTCTTAATTCTTGCTGAGTAATGGACCTTACTGTCTTCTTTAATATTTGTAATTGCCAGGACCTAGGATATTGTGGTGTCAATTCTCTTTAGAAACCTGAAATTTGGGCTCTGAACACAATGTTAGGCATGCCACCAAGCTTCCTTATGCTTACCCACTAAGGTTTTCTCTCTCATTGTTGTTTCCAGGCTCACCTTCAGTTTCTTATATCCAAGGTCTTATTATTTTGGCAGAGTATGTGAATCTATTTCGTTTGCCACATTTCATCTCAAAGTAAACGGGAAAATGAGAATCCAATTTTCTTTTTAATACCTGAGTAAACCCGAAGTGTGAGTAGTGCACAGTTCGAAACTCTGGACAATGGGCCTTGCCCTCTAATCTCTATATATAACTGAGGATTTTATTTGAAGCACTAAAGATGCTCTATTTTTTACTTTATTTAGATGTTGTATGCTTTTTAGTAGTTTCATTCTGATTTTCTGGAATACCACCTGAAATAGCAATTTGAAACTGGCTTGGAATTCTTTCTTGTGTTAATAAATATATTTCGTTAGAAGAGAAAAAGTTTATCCATCTTTGAGGTGACTATCCACTGCTTACGATGTGACTGAGGCGATACATGTTTTCTCATTCCATAATATACTGTAGTTTTATTTTTGATGCTTTATATTCTTATAGTTTCTTTGGTTTCTCCCATCCTTTTCAATTCTTTTCATGTGGGGTTATCTAGGTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGAGTAAGTTTCATTACCTTTACTGTCTTGAGTCATTCGAACCATCTTAATGAATCCTCAACTTCTTAAATGATTTTACCTCTGGGATGGATTAGCATCTAGGAATCGTGCTTTCCCTTAAAAGTTCAGTATACGACTAGAAAACTCTAGCCCATGGCTTAGGCAAGTTTACGCAGAACTCTGCTAACTCCAAGTCTAATATGCAATTGTAGTTCATCTGCCTTTACATCCTGAACAAGATAAGAGTCCATAACCATCATCTGCTTTGAAGTCTTTACATTTGATATTTGATGGTTGCTTACCTTTACTTAGAATGCTTCTTTATGCAAATTAATCGACTTACATCAACAATATTAATATCGATATTATGGTCATAGATACACAAATATTGGGGGTGGAGTAGCCATTTGAGAATCTCGTATATAGAAACTAATTAGCACCCTCTTGTGTTTTTGCATATGTAGGTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTAGTCCTTATTACCTAATTCTAAATAATGATTGTTAATTTATTTTGGTAAGGATGCTTTACCATGAATTTGATTTTTTTGTACATTTGCAATATTTAAGGTATGAAATCAAGAAAAAT</genome_strand>
        <mrna_strand>GAGAAGATAATGCGATTGTTTCAGTACTTGAGTCAATGGAAATCCAAAGCCAATGACGGAATTCAACAATCACTTCTTATCGCCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTAGTCCTTATTACCTAATTCTAAATAATGATTGTTAATTTATTTTGGTAAGGATGCTTTACCATGAATTTGATTTTTTTGTACATTTGCAATATTTAAGGTATGAAATCAAGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352173" ref_strand="+" ref_description="SGN-E352173 [cTOS-13-G8]">
      <seq>ccaaattcctctgcttattacatgtcacaagcaactacgttttctctccagtaatggtgtacggtccgagcatgttgccgaccctgaatcttaccggtgatgttttgctggttgaacatttgtcgccgttgttcgataagttgggacctggagatgtaatccttgttcggtcacctgataaccctaggaagactgtaactaaacgaattattggcatggagggtgatactgtcacttttctagctgacccttcaaaaagtgaccggtatattagcttaaaggttccaaaggggcatgtttggattcaaggagataacatctatgcttcaaaggattcacgacagctcgggccaatcccttgtggccttatctcgggaaaagtgttatacagagtatggcctccagagtgttttggttcattatgaccacaaaaacaatgtattgtactgaagatatacaattaaaatgagaaatgtgattctttactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="56586" stop="52911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56286" g_stop="56231" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56230" i_stop="56151" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56150" g_stop="55926" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="281" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55925" i_stop="53879" i_length="2047">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53878" g_stop="53768" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="392" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53767" i_stop="53307" i_length="461">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53306" g_stop="53211" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="488" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="498"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E352173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56286" e_stop="56231"/>
          <exon e_start="56150" e_stop="55926"/>
          <exon e_start="53878" e_stop="53768"/>
          <exon e_start="53306" e_stop="53211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATGGTACGTATTTTCTCCATTTTATCTGCAATTTTACCGCTAAGAAATTAGGTTATGCGGATAAAATTTTTCTACTGTTTTAGGTGTACGGTCCGAGCATGTTGCCGACCCTGAATCTTACCGGTGATGTTTTGCTGGTTGAACATTTGTCGCCGTTGTTCGATAAGTTGGGACCTGGAGATGTAATCCTTGTTCGGTCACCTGATAACCCTAGGAAGACTGTAACTAAACGAATTATTGGCATGGAGGGTGATACTGTCACTTTTCTAGCTGACCCTTCAAAAAGTGACCGGTATATTAGCTTAAAGGTGTGTTCTTTTCTTTAGTGTAATTTTGCCCTTTTTCCATTCTTGGATTGATTGTTGATTGTTGTTAGGTGAGGAGCCATAGCCTCAAACAATGTGTTCCTTTTGTTGGCTAAGTATATGACCATATGTGGGCTAGCATGAGTTATTGTTGTAATGAAGAAGTCTAGGAAGGCTTAAAGAAGAATGTGCTAGGATTAACCCCTTTATAGATAGGGTGAGCAAGGAGGTTCTAAACAGAAATGTCCTAGGATTTAGCCCCTTTAGAGATAGTGGCAAGTCAGGAGTTTTAGACAAAAATGTCCTAAGATTAGCCCCTTTAGAGATAGGGGTGAGTTACTAGCTTGTAAACGAAAATATGCTAGGATTAGCCTTTTTAGAGATAGGGGCGAGTCAGGAGCTTTTAAACAAAAATGTCCTAGCATTGAGCCCCTTTAGAAATAGTGGTGAGTCAGGAGCTTTTAGACAAAAATTGTCCTAGGATTAGCCCCTTGAGAGATAGGGGCGAGTTAGGAGCTTTTAAACAAAAATGTGCTAGGATTAACCCCTTTAGAGAAAGGGGCGAGTCAGGAGCTTTTAAATAAAAATGTGCTAGGATAGCCCTCTAGAGATAAGGGTGAGCCAGGTGCTTACTGTGGGTATTTATGACTCTGGTGGCAGCACGTGACAGTCGAATAACATGATTCTCAAGGAGTTACATGACTGCCAAGCCAATTCTTTTAAGACTTGTGGCTGCTTTAATTTCTATTGTTGATGATTTTCTATTAACTATAGTCCAGTTTTGTCATTGGTCTGTAGATTCACTGTTTTTATCTTCCTAGTGCTCTCTGTCTTTTCTCTTTCCTTATAGATGCAAACCTCTTGTTCTTCATTAGATTTCACCTTAGTTAGAGATAACAGACAGTTGCTAGTTTCTGCAGTGAATGCTTTAAATTCTTGGAGTCCCTTTACTTCATTAAGCAAATGAGAGAAAAAGTTGTATCTTTCAATCTTTGGACTTCCTAGTTTTCCACCCTTTCATAGAAACCACACATGGGATAAAACAAAAGGAGGTCACATTAGATGGTTTGACCTATATAGACCAATAAATTTGTTTGTCAGTGGTTCGGACTCTAGGATGGTTTAGTGTTAAAAGATAACATTGGTAGATTTAAAATCCAATGGAGTGAAGTTGTTTCAAAAGACCAACTATTTGTCCGAAGCTAGTTAAGAAGATACTTTAATGGAAACACTGAATCCTAACTAGTTTAGCATTGAGGTATAGTTGTTGTAAAGAGAACTGCATATGACCAAAAACATCCACTAATTGCTTGGGAAGTACTCTTAATTCTTGCTGAGTAATGGACCTTACTGTCTTCTTTAATATTTGTAATTGCCAGGACCTAGGATATTGTGGTGTCAATTCTCTTTAGAAACCTGAAATTTGGGCTCTGAACACAATGTTAGGCATGCCACCAAGCTTCCTTATGCTTACCCACTAAGGTTTTCTCTCTCATTGTTGTTTCCAGGCTCACCTTCAGTTTCTTATATCCAAGGTCTTATTATTTTGGCAGAGTATGTGAATCTATTTCGTTTGCCACATTTCATCTCAAAGTAAACGGGAAAATGAGAATCCAATTTTCTTTTTAATACCTGAGTAAACCCGAAGTGTGAGTAGTGCACAGTTCGAAACTCTGGACAATGGGCCTTGCCCTCTAATCTCTATATATAACTGAGGATTTTATTTGAAGCACTAAAGATGCTCTATTTTTTACTTTATTTAGATGTTGTATGCTTTTTAGTAGTTTCATTCTGATTTTCTGGAATACCACCTGAAATAGCAATTTGAAACTGGCTTGGAATTCTTTCTTGTGTTAATAAATATATTTCGTTAGAAGAGAAAAAGTTTATCCATCTTTGAGGTGACTATCCACTGCTTACGATGTGACTGAGGCGATACATGTTTTCTCATTCCATAATATACTGTAGTTTTATTTTTGATGCTTTATATTCTTATAGTTTCTTTGGTTTCTCCCATCCTTTTCAATTCTTTTCATGTGGGGTTATCTAGGTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGAGTAAGTTTCATTACCTTTACTGTCTTGAGTCATTCGAACCATCTTAATGAATCCTCAACTTCTTAAATGATTTTACCTCTGGGATGGATTAGCATCTAGGAATCGTGCTTTCCCTTAAAAGTTCAGTATACGACTAGAAAACTCTAGCCCATGGCTTAGGCAAGTTTACGCAGAACTCTGCTAACTCCAAGTCTAATATGCAATTGTAGTTCATCTGCCTTTACATCCTGAACAAGATAAGAGTCCATAACCATCATCTGCTTTGAAGTCTTTACATTTGATATTTGATGGTTGCTTACCTTTACTTAGAATGCTTCTTTATGCAAATTAATCGACTTACATCAACAATATTAATATCGATATTATGGTCATAGATACACAAATATTGGGGGTGGAGTAGCCATTTGAGAATCTCGTATATAGAAACTAATTAGCACCCTCTTGTGTTTTTGCATATGTAGGTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTA</genome_strand>
        <mrna_strand>CCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATG................................................................................GTGTACGGTCCGAGCATGTTGCCGACCCTGAATCTTACCGGTGATGTTTTGCTGGTTGAACATTTGTCGCCGTTGTTCGATAAGTTGGGACCTGGAGATGTAATCCTTGTTCGGTCACCTGATAACCCTAGGAAGACTGTAACTAAACGAATTATTGGCATGGAGGGTGATACTGTCACTTTTCTAGCTGACCCTTCAAAAAGTGACCGGTATATTAGCTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288053" ref_strand="+" ref_description="SGN-E288053 [cLES-7-H22]">
      <seq>tcttctctcattccaattttggagtgccgtggcgttgttcgcttgcttttataagcctttgcagcaagcagccatggcggcgcctcctccttctattacattctcatttccagttccccatgcaatcatgatgaaatctatgtcaatcttatccttcattcttcttctttcacctttgttcgccatggctaacacatcatttggtgctgaaaatacagaaggcataaagtatgatcttttccctgaaatcctcaaggaggaagctgtaggaagacttaatgagcttggaaaggtaagtgatgcaaatggctacctagagaggaccttccagagccctgcatcggtcagagcaggaaatcttcttcgtgcatggatggaagatgcaggcttgaaaacgtgggtggaccaaatgggcaatgtccatggtcgggctgaaggaattaatccaagtgaaaaggctttgttaattggctctcatttggatacagttattgatgctggattctttgatggttcattgggcataatttgtgcaatatctgcattgaaggcactgaattcctctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="60534" stop="62876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60834" g_stop="61036" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61037" i_stop="61843" i_length="807">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61844" g_stop="61932" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="292" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61933" i_stop="62114" i_length="182">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62115" g_stop="62218" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="396" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62219" i_stop="62289" i_length="71">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62290" g_stop="62374" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="481" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62375" i_stop="62489" i_length="115">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62490" g_stop="62576" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="568" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E288053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60834" e_stop="61036"/>
          <exon e_start="61844" e_stop="61932"/>
          <exon e_start="62115" e_stop="62218"/>
          <exon e_start="62290" e_stop="62374"/>
          <exon e_start="62490" e_stop="62576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCATTCCAATTTTGGAGTGCCGTGGCGTTGTTCGCTTGCTTTTATAAGCCTTTGCAGCAAGCAGCCATGGCGGCGCCTCCTCCTTCTATTACATTCTCATTTCCAGTTCCCCATGCAATCATGATGAAATCTATGTCAATCTTATCCTTCATTCTTCTTCTTTCACCTTTGTTCGCCATGGCTAACACATCATTTGGTAATTATTTGTGTTCTTCACATGTAAAGTTTTGATTTTTTTTACACCCTTTTGGGTAATGAATGAACCCTTTTAATGTTTCTGTTAGGATCTTTGGAAATGTGATGATTTTGCAAGTATTTGTACTTTTTTTTTTCTTCCAGGTGGAAAGCTTGCGTGTAAAAGTTGAAGTATATTCTGTCTGACTTTACTAGGTCTTTGAAGTTTATGTGTTGATTTGATTCTATTTAGAAAAAAAGATGGTTTCTTTATTGTGAAAATGGAATTATATTGTGACCTGTTTTTCTTAGGTAGCTGGTTCTTTGTGTTCTTGAAATCTATGTTTTGTTCGGAATCTTTAAAAATGTCTACGCGTATTGGATAGTCTAAAAGTAGTGTATTTTTTAAGGGTTCGATACGGATGGGGAAAGAGTTTTGGAGAGTCCGAGCTACATAGGTTGAAGTTATACTAGCTGTTTCATAAGAATTAATTAGTGATTGTCAAGATGGAAAAATTAGCTCCTTTAAGTTCTCACTAGTTTGTATATTCATGCCATTTTCAATTTGTTTCGTCTTGAACTGTAACATTATATGATGTACACAGCTATGATTCTGTTTCTTTCATTAGTTTGATTGTTTTCCAATGTGAAGTTCTATAAACAATGATTCTTTAAAAAACCCAAATGTTGTGTTCTTTATCGCAATGAACTGTTCCATTCATCTCACTAAACAAGATTCATCCGTCCCCCCATCCCCCTTGATTCAGTTGCTCTTTTTATGCTAAATACCTAAAATCTGTAATAATGTGGTGCTCTTTGTGATGATTAGGTGCTGAAAATACAGAAGGCATAAAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAGGTATCAAAGCAAGACAAACTACTTTAATCTAATCATTATTAGTGGAAGTCAAATTTCCCGGGAAGCATTTTTTTCTTGTATCTTAACTGAGTTTTTATCTTTCTTAGTGTACAATTCATTATGCATCAATGAATAATGAATTTGTTGTGTTGATTTAACAAATTTGTTGTGTTGTGTGACAGGTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAACGTATGTTTTCAACTTATCTTACAGTATTTTTAATGCTTCAGAAACTTAATTGAGAGCACTCCTGGTTCCAGGTGGGTGGACCAAATGGGCAATGTCCATGGTCGGGCTGAAGGAATTAATCCAAGTGAAAAGGCTTTGTTAATTGGCTCTCATTTGGTGAAGCATTGATTACTTACATCTTCTTCTGATAGTAGATTTGCTTAACTTCACAGCATTACTAGTTCAAGATGCTGCAGAAGGACCTGCCATTAAATATTTTGTATTTCAACAGGATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGA</genome_strand>
        <mrna_strand>TCTTCTCTCATTCCAATTTTGGAGTGCCGTGGCGTTGTTCGCTTGCTTTTATAAGCCTTTGCAGCAAGCAGCCATGGCGGCGCCTCCTCCTTCTATTACATTCTCATTTCCAGTTCCCCATGCAATCATGATGAAATCTATGTCAATCTTATCCTTCATTCTTCTTCTTTCACCTTTGTTCGCCATGGCTAACACATCATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAAATACAGAAGGCATAAAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAG......................................................................................................................................................................................GTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAAC.......................................................................GTGGGTGGACCAAATGGGCAATGTCCATGGTCGGGCTGAAGGAATTAATCCAAGTGAAAAGGCTTTGTTAATTGGCTCTCATTTG...................................................................................................................GATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348960" ref_strand="+" ref_description="SGN-E348960 [cTOF-29-M20]">
      <seq>ttctctcattcaattttggagtgccgtggcgttgttcgcttgcttttataagcctttgcagcaagcagccatggcggcgcctcctccttctattacattctcatttccagttccccatgcaatcatgatgaaatctatgtcaatcttatccttcattcttcttctttcacctttgttcgccatggctaacacatcatttggtgctgaaaatacagaaggcataaagtatgatcttttccctgaaatcctcaaggaggaagctgtaggaagacttaatgagcttggaaaggtaagtgatgcaaatggctacctagagaggaccttccagagccctgcatcggtcagagcaggaaatcttcttcgtgcatggatggaagatgcaggcttgaaaacgatacagttattgatgctggattctttgatggttcattgggcataatttgtgcaatatctgcattgaaggcactgaattcctctggaaggttgggtaaactccggcggccagttgaggtaatcgcatttagtgatgaggagggagtaaggtttcagtcaaccttcttgggtagtgcagctattgctggcatattaccagttncagcgttgcaagtacatgataagaatggtgtgacagtgcaaggtgctctgagagcaagttctatagagactacagaagaaaaccttttgcagctcaaatatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="60536" stop="64793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60836" g_stop="61036" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61037" i_stop="61843" i_length="807">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61844" g_stop="61932" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="289" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61933" i_stop="62114" i_length="182">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62115" g_stop="62218" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="393" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62219" i_stop="62489" i_length="271">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62490" g_stop="62606" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="510" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62607" i_stop="64224" i_length="1618">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64225" g_stop="64334" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="620" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64335" i_stop="64413" i_length="79">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64414" g_stop="64493" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="700" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E348960" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60836" e_stop="61036"/>
          <exon e_start="61844" e_stop="61932"/>
          <exon e_start="62115" e_stop="62218"/>
          <exon e_start="62490" e_stop="62606"/>
          <exon e_start="64225" e_stop="64334"/>
          <exon e_start="64414" e_stop="64493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCATTCCAATTTTGGAGTGCCGTGGCGTTGTTCGCTTGCTTTTATAAGCCTTTGCAGCAAGCAGCCATGGCGGCGCCTCCTCCTTCTATTACATTCTCATTTCCAGTTCCCCATGCAATCATGATGAAATCTATGTCAATCTTATCCTTCATTCTTCTTCTTTCACCTTTGTTCGCCATGGCTAACACATCATTTGGTAATTATTTGTGTTCTTCACATGTAAAGTTTTGATTTTTTTTACACCCTTTTGGGTAATGAATGAACCCTTTTAATGTTTCTGTTAGGATCTTTGGAAATGTGATGATTTTGCAAGTATTTGTACTTTTTTTTTTCTTCCAGGTGGAAAGCTTGCGTGTAAAAGTTGAAGTATATTCTGTCTGACTTTACTAGGTCTTTGAAGTTTATGTGTTGATTTGATTCTATTTAGAAAAAAAGATGGTTTCTTTATTGTGAAAATGGAATTATATTGTGACCTGTTTTTCTTAGGTAGCTGGTTCTTTGTGTTCTTGAAATCTATGTTTTGTTCGGAATCTTTAAAAATGTCTACGCGTATTGGATAGTCTAAAAGTAGTGTATTTTTTAAGGGTTCGATACGGATGGGGAAAGAGTTTTGGAGAGTCCGAGCTACATAGGTTGAAGTTATACTAGCTGTTTCATAAGAATTAATTAGTGATTGTCAAGATGGAAAAATTAGCTCCTTTAAGTTCTCACTAGTTTGTATATTCATGCCATTTTCAATTTGTTTCGTCTTGAACTGTAACATTATATGATGTACACAGCTATGATTCTGTTTCTTTCATTAGTTTGATTGTTTTCCAATGTGAAGTTCTATAAACAATGATTCTTTAAAAAACCCAAATGTTGTGTTCTTTATCGCAATGAACTGTTCCATTCATCTCACTAAACAAGATTCATCCGTCCCCCCATCCCCCTTGATTCAGTTGCTCTTTTTATGCTAAATACCTAAAATCTGTAATAATGTGGTGCTCTTTGTGATGATTAGGTGCTGAAAATACAGAAGGCATAAAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAGGTATCAAAGCAAGACAAACTACTTTAATCTAATCATTATTAGTGGAAGTCAAATTTCCCGGGAAGCATTTTTTTCTTGTATCTTAACTGAGTTTTTATCTTTCTTAGTGTACAATTCATTATGCATCAATGAATAATGAATTTGTTGTGTTGATTTAACAAATTTGTTGTGTTGTGTGACAGGTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAACGTATGTTTTCAACTTATCTTACAGTATTTTTAATGCTTCAGAAACTTAATTGAGAGCACTCCTGGTTCCAGGTGGGTGGACCAAATGGGCAATGTCCATGGTCGGGCTGAAGGAATTAATCCAAGTGAAAAGGCTTTGTTAATTGGCTCTCATTTGGTGAAGCATTGATTACTTACATCTTCTTCTGATAGTAGATTTGCTTAACTTCACAGCATTACTAGTTCAAGATGCTGCAGAAGGACCTGCCATTAAATATTTTGTATTTCAACAGGATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGAAGGTTGGGTAAACTCCGGCGGCCAGTTGAGGTGAGACACATAAAACATGTTAGCCTGGAATGTCAATCGTCTTTCATGTTTTCTGTCCTGTTATTCTTTGTTGCAACCAGAAGTTCATTTTTCTTTTTCAATCACACTAGTAATGCATTTTTAAGGAGTGGGGGCACTGTACTTTATTTGTGTCTCCTAAAGACAAAATCCGTTAGCGGAACTGCTCAATCTGAAGTCCAAAAAGTAATTGCTCTTTAACTCTAACTCCAGAAAGTTCAGGCACTAGTCATGAGCTTTCCCATTTAAATTTTGGCTATGTTCTGGTGTCGACTGCTAAGTCTCAGACTGTTCCAATTTTGTTTTGGGTTTACACTTAAAACCAATCCTTGAAGAGGCTTATGTTTGTGGTTGCAAGCTCCATTAAAAATGTGTTTTGCATATGAGGCGATGAAAGTGGATGGTAAATGGGGTTAATACTTGGTACGTCTCTGACTTGACCAACATAGTCTAGTATGCTGATATCTGAATAATGAGTTAGATAAATCCTTACTACCTGGGGTTTCTATCATTATGCTATCTCTCTTTTCATGGTATATATTTGTTCACAATTATGAACATGCAAACAGTTAGGTCCACATCTGCCTCATGTTGCTAGATAACTAAATTGTTGACCGATGAGAGGAACTTGGGAGCTAAAGTACAAGAGAACTATGTTGCTTGGACTCTTAAGTAAACCGCTAGGTTCATGTCATCCTTCAAAAACAGGACATTTTTTAAGGATCTGACATGAGTGCAGCATTATTGGAGAGTCCGAGCAACATGCAAGAGAGTGCACAAATAATCCTATGGTATTACCAAAAGAAATTATCATTATGATCAAATAGAATCCTACGGTAATACACTTAAAAAATATTATCACAACATTCGAGTTGATTCTTGCTGACATAGTTGTAACCTGCGCACGGACAATATCAAATCCATCTATTAGAGTTTTGGAGTATGTATTAATGTTCCCTGGTTTTACTTCTCCCTCTTCTCGCATCTTTCATCTCTTTTTCTTATCTCCTTGTCTTTCAGCTTTGAGATGTATGAACTCACTAATGAGCTTTGTAATTTCACCCTCTTGCCCATCTAACCCTAGCTTCAAATGGTATGTCATGTCCTCTTTGAAATGCTATAACCTTGAACATGCAAATTTGAGTTTACGTTCCTTATTTTCATGTACTTGACATAACTAGACCTTCTAGGGGAGAATTGAGTTATATCTAACAAATAATCCTGTCTGTTTAGAATCTAAAATAGTAGACCTTCTAGGGGAGACTATCACACTTTTGCACCAGTCTGTCTATGATCTAAATATTGGCATAAGCACTTAAGTAATTTTATATCACCAGTCATCATTTGTGGTAGCAGGATTATCAGGAGTCAGAAAGAATATACTTAATGTGCAATGACAAAATAAAGTTGTTTAAGGAGAAGTTGTAGCAAGTTTTACAGCACAAGTAGTAGTCCAGTGGCTCAATGTGTAATTGCTGTCAACTCTCCTTTGTATTCCTTCCATCTTTTTTATTTTGAGTTGATATCATATCATAAAATATTTTGTTTCTCCTGCTTTTTAGTATTAAAAATTGCAAATTTCTTATGTACTATTTTGCAGGTAATCGCATTTAGTGATGAGGAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAAGTTTGTATGGCTAACCCAAAAGCTTGTCTTTGTTCGTATAGCTACTGTGTCACAGTATACTAATGTGCAAGTGTTTCAGTGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTTGCAGCTCAAATATGAAC</genome_strand>
        <mrna_strand>TTCTCTCATT-CAATTTTGGAGTGCCGTGGCGTTGTTCGCTTGCTTTTATAAGCCTTTGCAGCAAGCAGCCATGGCGGCGCCTCCTCCTTCTATTACATTCTCATTTCCAGTTCCCCATGCAATCATGATGAAATCTATGTCAATCTTATCCTTCATTCTTCTTCTTTCACCTTTGTTCGCCATGGCTAACACATCATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAAATACAGAAGGCATAAAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAG......................................................................................................................................................................................GTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAAC...............................................................................................................................................................................................................................................................................GATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGAAGGTTGGGTAAACTCCGGCGGCCAGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCGCATTTAGTGATGAGGAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTNCAGCGTTGCAAGTACATGATAAGAA...............................................................................TGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTTGCAGCTCAAATATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269600" ref_strand="+" ref_description="SGN-E269600 [cLEM-2-F9]">
      <seq>aagtatgatcttttccctgaaatcctcaaggaggaagctggaggaagacttaatgagcttggaaaggtaagtgatgcaaatggctacctagagaggaccttccagagccctgcatcggtcagagcaggaaatcttcttcgtgcatggatggaagatgcaggcttgaaaacgtgggtggaccaaatgggcaatgtccatggtcgggctgaaggaattaatccaagtgaaaaggctttgttaattggctctcatttggatacagttattgatgctggattctttgatggttcattgggcataatttgtgcaatatctgcattgaaggcactgaattcctctggaaggttgggtaaactccggcggccagttgaggtaatcgcatttagtgatgaggagggagtaaggtttcagtcaaccttcttgggtagtgcagctattgctggcatattaccagtttcagcgttgcaagtacatgataagaatggtgtgacagtgcaaggtgctctgagagcaagttctatagagactacagaagaaaacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="61567" stop="64776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61867" g_stop="61932" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61933" i_stop="62114" i_length="182">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62115" g_stop="62218" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="170" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62219" i_stop="62289" i_length="71">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62290" g_stop="62374" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="255" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62375" i_stop="62489" i_length="115">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62490" g_stop="62606" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="372" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62607" i_stop="64224" i_length="1618">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64225" g_stop="64334" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="482" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64335" i_stop="64413" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64414" g_stop="64476" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="545" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E269600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61867" e_stop="61932"/>
          <exon e_start="62115" e_stop="62218"/>
          <exon e_start="62290" e_stop="62374"/>
          <exon e_start="62490" e_stop="62606"/>
          <exon e_start="64225" e_stop="64334"/>
          <exon e_start="64414" e_stop="64476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAGGTATCAAAGCAAGACAAACTACTTTAATCTAATCATTATTAGTGGAAGTCAAATTTCCCGGGAAGCATTTTTTTCTTGTATCTTAACTGAGTTTTTATCTTTCTTAGTGTACAATTCATTATGCATCAATGAATAATGAATTTGTTGTGTTGATTTAACAAATTTGTTGTGTTGTGTGACAGGTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAACGTATGTTTTCAACTTATCTTACAGTATTTTTAATGCTTCAGAAACTTAATTGAGAGCACTCCTGGTTCCAGGTGGGTGGACCAAATGGGCAATGTCCATGGTCGGGCTGAAGGAATTAATCCAAGTGAAAAGGCTTTGTTAATTGGCTCTCATTTGGTGAAGCATTGATTACTTACATCTTCTTCTGATAGTAGATTTGCTTAACTTCACAGCATTACTAGTTCAAGATGCTGCAGAAGGACCTGCCATTAAATATTTTGTATTTCAACAGGATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGAAGGTTGGGTAAACTCCGGCGGCCAGTTGAGGTGAGACACATAAAACATGTTAGCCTGGAATGTCAATCGTCTTTCATGTTTTCTGTCCTGTTATTCTTTGTTGCAACCAGAAGTTCATTTTTCTTTTTCAATCACACTAGTAATGCATTTTTAAGGAGTGGGGGCACTGTACTTTATTTGTGTCTCCTAAAGACAAAATCCGTTAGCGGAACTGCTCAATCTGAAGTCCAAAAAGTAATTGCTCTTTAACTCTAACTCCAGAAAGTTCAGGCACTAGTCATGAGCTTTCCCATTTAAATTTTGGCTATGTTCTGGTGTCGACTGCTAAGTCTCAGACTGTTCCAATTTTGTTTTGGGTTTACACTTAAAACCAATCCTTGAAGAGGCTTATGTTTGTGGTTGCAAGCTCCATTAAAAATGTGTTTTGCATATGAGGCGATGAAAGTGGATGGTAAATGGGGTTAATACTTGGTACGTCTCTGACTTGACCAACATAGTCTAGTATGCTGATATCTGAATAATGAGTTAGATAAATCCTTACTACCTGGGGTTTCTATCATTATGCTATCTCTCTTTTCATGGTATATATTTGTTCACAATTATGAACATGCAAACAGTTAGGTCCACATCTGCCTCATGTTGCTAGATAACTAAATTGTTGACCGATGAGAGGAACTTGGGAGCTAAAGTACAAGAGAACTATGTTGCTTGGACTCTTAAGTAAACCGCTAGGTTCATGTCATCCTTCAAAAACAGGACATTTTTTAAGGATCTGACATGAGTGCAGCATTATTGGAGAGTCCGAGCAACATGCAAGAGAGTGCACAAATAATCCTATGGTATTACCAAAAGAAATTATCATTATGATCAAATAGAATCCTACGGTAATACACTTAAAAAATATTATCACAACATTCGAGTTGATTCTTGCTGACATAGTTGTAACCTGCGCACGGACAATATCAAATCCATCTATTAGAGTTTTGGAGTATGTATTAATGTTCCCTGGTTTTACTTCTCCCTCTTCTCGCATCTTTCATCTCTTTTTCTTATCTCCTTGTCTTTCAGCTTTGAGATGTATGAACTCACTAATGAGCTTTGTAATTTCACCCTCTTGCCCATCTAACCCTAGCTTCAAATGGTATGTCATGTCCTCTTTGAAATGCTATAACCTTGAACATGCAAATTTGAGTTTACGTTCCTTATTTTCATGTACTTGACATAACTAGACCTTCTAGGGGAGAATTGAGTTATATCTAACAAATAATCCTGTCTGTTTAGAATCTAAAATAGTAGACCTTCTAGGGGAGACTATCACACTTTTGCACCAGTCTGTCTATGATCTAAATATTGGCATAAGCACTTAAGTAATTTTATATCACCAGTCATCATTTGTGGTAGCAGGATTATCAGGAGTCAGAAAGAATATACTTAATGTGCAATGACAAAATAAAGTTGTTTAAGGAGAAGTTGTAGCAAGTTTTACAGCACAAGTAGTAGTCCAGTGGCTCAATGTGTAATTGCTGTCAACTCTCCTTTGTATTCCTTCCATCTTTTTTATTTTGAGTTGATATCATATCATAAAATATTTTGTTTCTCCTGCTTTTTAGTATTAAAAATTGCAAATTTCTTATGTACTATTTTGCAGGTAATCGCATTTAGTGATGAGGAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAAGTTTGTATGGCTAACCCAAAAGCTTGTCTTTGTTCGTATAGCTACTGTGTCACAGTATACTAATGTGCAAGTGTTTCAGTGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTT</genome_strand>
        <mrna_strand>AAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGGAGGAAGACTTAATGAGCTTGGAAAG......................................................................................................................................................................................GTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAAC.......................................................................GTGGGTGGACCAAATGGGCAATGTCCATGGTCGGGCTGAAGGAATTAATCCAAGTGAAAAGGCTTTGTTAATTGGCTCTCATTTG...................................................................................................................GATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGAAGGTTGGGTAAACTCCGGCGGCCAGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCGCATTTAGTGATGAGGAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAA...............................................................................TGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272200" ref_strand="+" ref_description="SGN-E272200 [cLEM-19-E9]">
      <seq>gagagagtaaggtttcagtcaaccttcttgggtagtgcagctattgctggcatattaccagtttcagcgttgcaagtacatgataagaatggtgtgacagtgcaaggtgctctgagagcaagttctatagagactacagaagaaaaccttttgcagctcaaatatgaaccagaatctgtttggggctatgttgaggttcacattgaacagggacctgtactggagaatgtcggtctccctcttggttcagtaaaaggcattgcagggcagacaagattgaaggtgacagtgaaaggcacacaaggacatgcagggacagtacccatgaatatgcgacaggatcctatggttgcagctgctgaactaattgtatttctggaaagtctttgtaaacaacctgactattatctgtcatatgatggtcaatgcacatcttcaacagtggaatctcttgcaggatctctggtctgtactgttggagagatatcaacttggccaagtgcaagtaatgtcattccaggccaggtcacattcaccgtagatgtacgtgcgatggatgacttangacgagaagctataatttatgaattctctaatagactctaccatatgtgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="63946" stop="66010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64246" g_stop="64334" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64335" i_stop="64413" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64414" g_stop="64519" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="195" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64520" i_stop="64625" i_length="106">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64626" g_stop="64712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="282" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64713" i_stop="65261" i_length="549">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65262" g_stop="65504" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="525" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65618" g_stop="65710" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="618" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E272200" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64246" e_stop="64334"/>
          <exon e_start="64414" e_stop="64519"/>
          <exon e_start="64626" e_stop="64712"/>
          <exon e_start="65262" e_stop="65504"/>
          <exon e_start="65618" e_stop="65710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAAGTTTGTATGGCTAACCCAAAAGCTTGTCTTTGTTCGTATAGCTACTGTGTCACAGTATACTAATGTGCAAGTGTTTCAGTGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAGGTCAATAATAGTTCTCTATATACCATATCAAAGTCACTAACTACTTCATAAGATCCCAGGTAATGTAGTTGCTGATGATAAATCTTATTATAATGGTCTTTTGCAGGTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAGGTGTGTATTCTTATCCTACCGCCTCTCGGCTGCTTTATGTGATCGCAGCATCAAAGATAGTCTGAATTTTCTACAGCAGAAGTCGTCTACTTCTATTCTAAGTTTTTTAATGTAACTTAGTAGGAGCACATTTTCAAGTAGTTTTCGTCTTTGTGATGATATGGCGTTACAAAGTAGAGAAGTACTTATATGATGTATGTACCACTTTGCTTGATTGAACTCCAAGTTGGAATCTTGATCCTTATTATGGGAGAATTGGATCTTACTTTGGTGCATTGAAGCTAAATTCTAAAGATTGCAATTAATAAATTCAAGAAACATATTTCAAGCCCTTGGGCAATAAATCAATTGATCAGTAAGAGAGGAATAGTTAAGTCAGAGCTCTAAAGGGTGAGAAAATTATCTCCCTGGGAAATGTGTTGTTGGCACAATCTACAGCTTGGCTACTTCCACTTGTCACGACTAAAATCTCCTTTGGTGTACACTGCCGCTTATAAATTTGGTTTAAGTAATGCTTGCTTGACCAGACTTTTGAATTAAGCATTGCAGGTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAGGCAAGCTCTCCTTAAACTGCTGACACACAAGTTACATATTGTTGTTTGTTATTCATACAGGGTAAGTACTCCAATTTCTAGAATGTTCATTACTACATGTGCATTTATTGCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGAT</genome_strand>
        <mrna_strand>GAGAGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAA...............................................................................TGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAG..........................................................................................................GTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG.................................................................................................................GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTANGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249120" ref_strand="+" ref_description="SGN-E249120 [cLEF-49-H12]">
      <seq>aaaaccttttgcagctcaaatatgaaccagaatctgtttggggctatgttgaggttcacattgaacagggacctgtactggagaatgtcggtctccctcttggttcagtaaaaggcattgcagggcagacaagattgaaggtgacagtgaaaggcacacaaggacatgcagggacagtacccatgaatatgcgacaggatcctatggttgcagctgctgaactaattgtatttctggaaagtctttgtaaacaacctgactattatctgtcatatgatggtcaatgcacatcttcaacagtggaatctcttgcaggatctctggtctgtactgttggagagatatcaacttggccaagtgcaagtaatgtcattccaggccaggtcacattcaccgtagatgtacgtgcgatggatgacttangacgagaagctataatttatgaattctctaatagactctaccatatgtgtgataggcgttctgtcttctgtaacgttgagagaaagcatgatgcaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="64167" stop="66043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64467" g_stop="64519" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64520" i_stop="64625" i_length="106">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64626" g_stop="64712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="140" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64713" i_stop="65261" i_length="549">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65262" g_stop="65504" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="383" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65743" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="509" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65817" g_stop="65830" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="523" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E249120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64467" e_stop="64519"/>
          <exon e_start="64626" e_stop="64712"/>
          <exon e_start="65262" e_stop="65504"/>
          <exon e_start="65618" e_stop="65743"/>
          <exon e_start="65817" e_stop="65830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAGGTCAATAATAGTTCTCTATATACCATATCAAAGTCACTAACTACTTCATAAGATCCCAGGTAATGTAGTTGCTGATGATAAATCTTATTATAATGGTCTTTTGCAGGTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAGGTGTGTATTCTTATCCTACCGCCTCTCGGCTGCTTTATGTGATCGCAGCATCAAAGATAGTCTGAATTTTCTACAGCAGAAGTCGTCTACTTCTATTCTAAGTTTTTTAATGTAACTTAGTAGGAGCACATTTTCAAGTAGTTTTCGTCTTTGTGATGATATGGCGTTACAAAGTAGAGAAGTACTTATATGATGTATGTACCACTTTGCTTGATTGAACTCCAAGTTGGAATCTTGATCCTTATTATGGGAGAATTGGATCTTACTTTGGTGCATTGAAGCTAAATTCTAAAGATTGCAATTAATAAATTCAAGAAACATATTTCAAGCCCTTGGGCAATAAATCAATTGATCAGTAAGAGAGGAATAGTTAAGTCAGAGCTCTAAAGGGTGAGAAAATTATCTCCCTGGGAAATGTGTTGTTGGCACAATCTACAGCTTGGCTACTTCCACTTGTCACGACTAAAATCTCCTTTGGTGTACACTGCCGCTTATAAATTTGGTTTAAGTAATGCTTGCTTGACCAGACTTTTGAATTAAGCATTGCAGGTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAGGCAAGCTCTCCTTAAACTGCTGACACACAAGTTACATATTGTTGTTTGTTATTCATACAGGGTAAGTACTCCAATTTCTAGAATGTTCATTACTACATGTGCATTTATTGCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGC</genome_strand>
        <mrna_strand>AAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAG..........................................................................................................GTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG.................................................................................................................GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTANGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG.........................................................................CATGATGCAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369648" ref_strand="+" ref_description="SGN-E369648 [TUS-25-H16]">
      <seq>aaaccttttgcagctcaaatatgaaccagaatctgtttggggctatgttgaggttcacattgaacagggacctgtactggagaatgtcggtctccctcttggttcagtaaaaggcattgcagggcagacaagattgaaggtgacagtgaaaggcacacaaggacatgcagggacagtacccatgaatatgcgacaggatcctatggttgcagctgctgaactaattgtatttctggaaagtctttgtaaacaacctgactattatctgtcatatgatggtcaatgcacatcttcaacagtggaatctcttgcaggatctctggtctgtactgttggagagatatcaacttggccaagtgcaagtaatgtcattccaggccaggtcacattcaccgtagatgtacgtgcgatggatgacttaggacgagaagctataatttatgaattctctaatagactctaccatatgtgtgataggcgttctgtcttctgtaacgttgagagaaagcatgatgcaaatgctgtggtttgcgatcctagcctgagtagacagctaaaatctgcatcttatactgctttgaaaagaataactgatgaggatccaggtgatgttcctgtactgatgagtggagcaggacatgatgcaatggccatgtctcatctaaccaaggtgggaatgctatttgtgcgttgtcgcggaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="64168" stop="66501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64468" g_stop="64519" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64520" i_stop="64625" i_length="106">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64626" g_stop="64712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="139" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64713" i_stop="65261" i_length="549">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65262" g_stop="65504" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="382" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65743" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="508" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65817" g_stop="65978" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="670" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65979" i_stop="66167" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66168" g_stop="66201" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="704" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E369648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64468" e_stop="64519"/>
          <exon e_start="64626" e_stop="64712"/>
          <exon e_start="65262" e_stop="65504"/>
          <exon e_start="65618" e_stop="65743"/>
          <exon e_start="65817" e_stop="65978"/>
          <exon e_start="66168" e_stop="66201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAGGTCAATAATAGTTCTCTATATACCATATCAAAGTCACTAACTACTTCATAAGATCCCAGGTAATGTAGTTGCTGATGATAAATCTTATTATAATGGTCTTTTGCAGGTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAGGTGTGTATTCTTATCCTACCGCCTCTCGGCTGCTTTATGTGATCGCAGCATCAAAGATAGTCTGAATTTTCTACAGCAGAAGTCGTCTACTTCTATTCTAAGTTTTTTAATGTAACTTAGTAGGAGCACATTTTCAAGTAGTTTTCGTCTTTGTGATGATATGGCGTTACAAAGTAGAGAAGTACTTATATGATGTATGTACCACTTTGCTTGATTGAACTCCAAGTTGGAATCTTGATCCTTATTATGGGAGAATTGGATCTTACTTTGGTGCATTGAAGCTAAATTCTAAAGATTGCAATTAATAAATTCAAGAAACATATTTCAAGCCCTTGGGCAATAAATCAATTGATCAGTAAGAGAGGAATAGTTAAGTCAGAGCTCTAAAGGGTGAGAAAATTATCTCCCTGGGAAATGTGTTGTTGGCACAATCTACAGCTTGGCTACTTCCACTTGTCACGACTAAAATCTCCTTTGGTGTACACTGCCGCTTATAAATTTGGTTTAAGTAATGCTTGCTTGACCAGACTTTTGAATTAAGCATTGCAGGTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAGGCAAGCTCTCCTTAAACTGCTGACACACAAGTTACATATTGTTGTTTGTTATTCATACAGGGTAAGTACTCCAATTTCTAGAATGTTCATTACTACATGTGCATTTATTGCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAGGTGAGTTATACTCAAACCTTGTATTTTACTACTCCAGACGTGATCTTTTTTCGTTTTCTTATCCAAGCCACCTTGTGCACCTATACTATTACATCCTATATAGGTGTTTCAAAGTTTTAACCTGGTTCATTGACACTTGAATGTAATTTTCCTTCTTATTTTTACTAAAGATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCA</genome_strand>
        <mrna_strand>AAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAG..........................................................................................................GTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG.................................................................................................................GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG.........................................................................CATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG.............................................................................................................................................................................................GTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243118" ref_strand="+" ref_description="SGN-E243118 [cLEE-2-I21]">
      <seq>agggcagacaagattgaaggtgacagtgaaaggcacacaaggacatgcagggacagtacccatgaatatgcgacaggatcctatggttgcagctgctgaactaattgtatttctggaaagtctttgtaaacaacctgactattatctgtcatatgatggtcaatgcacatcttcaacagtggaatctcttgcaggatctctggtctgtactgttggagagatatcaacttggccaagtgcaagtaatgtcattccaggccaggtcacattcaccgtagatgtacgtgcgatggatgacttaggacgagaagctataatttatgaattctctaatagactctaccatatgtgtgataggcgttctgtcttctgtaacgttgagagaaagcatgatgcaaatgctgtggtttgcgatcctagcctgagtagacagctaaaatctgcatcttatactgctttgaaaagaataactgatgaggatccaggtgatgttcctgtactgatgagtggagcaggacatgatgcaatggccatgtctcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="64394" stop="66272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64694" g_stop="64712" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64713" i_stop="65261" i_length="549">
            <donor d_prob="0.924" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65262" g_stop="65504" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="262" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65618" g_stop="65743" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="388" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65817" g_stop="65972" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="544" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E243118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64694" e_stop="64712"/>
          <exon e_start="65262" e_stop="65504"/>
          <exon e_start="65618" e_stop="65743"/>
          <exon e_start="65817" e_stop="65972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCAGACAAGATTGAAGGTGTGTATTCTTATCCTACCGCCTCTCGGCTGCTTTATGTGATCGCAGCATCAAAGATAGTCTGAATTTTCTACAGCAGAAGTCGTCTACTTCTATTCTAAGTTTTTTAATGTAACTTAGTAGGAGCACATTTTCAAGTAGTTTTCGTCTTTGTGATGATATGGCGTTACAAAGTAGAGAAGTACTTATATGATGTATGTACCACTTTGCTTGATTGAACTCCAAGTTGGAATCTTGATCCTTATTATGGGAGAATTGGATCTTACTTTGGTGCATTGAAGCTAAATTCTAAAGATTGCAATTAATAAATTCAAGAAACATATTTCAAGCCCTTGGGCAATAAATCAATTGATCAGTAAGAGAGGAATAGTTAAGTCAGAGCTCTAAAGGGTGAGAAAATTATCTCCCTGGGAAATGTGTTGTTGGCACAATCTACAGCTTGGCTACTTCCACTTGTCACGACTAAAATCTCCTTTGGTGTACACTGCCGCTTATAAATTTGGTTTAAGTAATGCTTGCTTGACCAGACTTTTGAATTAAGCATTGCAGGTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAGGCAAGCTCTCCTTAAACTGCTGACACACAAGTTACATATTGTTGTTTGTTATTCATACAGGGTAAGTACTCCAATTTCTAGAATGTTCATTACTACATGTGCATTTATTGCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTA</genome_strand>
        <mrna_strand>AGGGCAGACAAGATTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG.................................................................................................................GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG.........................................................................CATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369647" ref_strand="+" ref_description="SGN-E369647 [TUS-25-H16](-)">
      <seq>agtacccatgaatatgcgacaggatcctatggttgcagctgctgaactaattgtatttctggaaagtctttgtaaacaacctgactattatctgtcatatgatggtcaatgcacatcttcaacagtggaatctcttgcaggatctctggtctgtactgttggagagatatcaacttggccaagtgcaagtaatgtcattccaggccaggtcacattcaccgtagatgtacgtgcgatggatgacttaggacgagaagctataatttatgaattctctaatagactctaccatatgtgtgataggcgttctgtcttctgtaacgttgagagaaagcatgatgcaaatgctgtggtttgcgatcctagcctgagtagacagctaaaatctgcatcttatactgctttgaaaagaataactgatgaggatccaggtgatgttcctgtactgatgagtggagcaggacatgatgcaatggccatgtctcatctaaccaaggtgggaatgctatttgtgcgttgtcgcggaggcatcagccattctccagcagaacatgtattggatgatgatgtttgggcagctggaatggctgtccttgcatttttggagacactcttgtaattgttggcattttgcaatgcaaactagtaggctagtttgctattcataatcccatttttgtatatatatgtatccattcaatttctatagttgtagtaatgagaatgtatatttgcaataaaacaagttgacctgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="64997" stop="66728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65297" g_stop="65504" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65618" g_stop="65743" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="334" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65817" g_stop="65978" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="496" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65979" i_stop="66167" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66168" g_stop="66436" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="765" r_length="269" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E369647" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65297" e_stop="65504"/>
          <exon e_start="65618" e_stop="65743"/>
          <exon e_start="65817" e_stop="65978"/>
          <exon e_start="66168" e_stop="66436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAGGCAAGCTCTCCTTAAACTGCTGACACACAAGTTACATATTGTTGTTTGTTATTCATACAGGGTAAGTACTCCAATTTCTAGAATGTTCATTACTACATGTGCATTTATTGCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAGGTGAGTTATACTCAAACCTTGTATTTTACTACTCCAGACGTGATCTTTTTTCGTTTTCTTATCCAAGCCACCTTGTGCACCTATACTATTACATCCTATATAGGTGTTTCAAAGTTTTAACCTGGTTCATTGACACTTGAATGTAATTTTCCTTCTTATTTTTACTAAAGATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTACTTAATTT</genome_strand>
        <mrna_strand>AGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG.................................................................................................................GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG.........................................................................CATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG.............................................................................................................................................................................................GTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251037" ref_strand="-" ref_description="SGN-E251037 [cLEG-17-L11]">
      <seq>gactattatctgtcatatgatggtcaatgcacatcttcaacagtggaatctcttgcaggatctctggtctgtactgttggagagatatcaacttggccaagtgcaagtaatgtcattccaggccaggtcacattcaccgtagatgtacgtgcgatggatgacttaggacgagaagctataatttatgaattctctaatagactctaccatatgtgtgataggcgttctgtcttctgtaacgttgagagaaagcatgatgcaaatgctgtggtttgcgatcctagcttgagtagacagctaaaatctgcatcttatactgctttgaaaagaataactgatgaggatccaggtgatgttcctgtactgatgagtggagcaggacatgatgcaatggccatgtctcatctaaccaaggtgggaatgctatttgtgcgttgtcgcggaggcatcagccattctccagcagaacatgtattggatgatgatgtttgggcagctggaatggctgtccttgcatttttggagacactcttgtaattgttggcattttgcaatgcaaactagtaggctagtttgctattcataatcccatttttgtatatatatgtatccattcaatttctatagttgtagtaatgagaatgtatatttgcaataaaacaagttgacctgttaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="65079" stop="66728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65379" g_stop="65504" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65618" g_stop="65743" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="252" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65817" g_stop="65978" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="414" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65979" i_stop="66167" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66168" g_stop="66440" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="686" r_length="272" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E251037" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251037" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65379" e_stop="65504"/>
          <exon e_start="65618" e_stop="65743"/>
          <exon e_start="65817" e_stop="65978"/>
          <exon e_start="66168" e_stop="66440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAGGCAAGCTCTCCTTAAACTGCTGACACACAAGTTACATATTGTTGTTTGTTATTCATACAGGGTAAGTACTCCAATTTCTAGAATGTTCATTACTACATGTGCATTTATTGCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAGGTGAGTTATACTCAAACCTTGTATTTTACTACTCCAGACGTGATCTTTTTTCGTTTTCTTATCCAAGCCACCTTGTGCACCTATACTATTACATCCTATATAGGTGTTTCAAAGTTTTAACCTGGTTCATTGACACTTGAATGTAATTTTCCTTCTTATTTTTACTAAAGATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTACTTAATTTGAAC</genome_strand>
        <mrna_strand>GACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG.................................................................................................................GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG.........................................................................CATGATGCAAATGCTGTGGTTTGCGATCCTAGCTTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG.............................................................................................................................................................................................GTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTA-AAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572763" ref_strand="-" ref_description="SGN-E572763 [31968]">
      <seq>caggatctctggtctgtactgttggagagatatcaacttggccaagtgcaagtaatgtcattccaggccaggtgacattcaccgtagatgtacgtgcgatggatgactcaggacgagaagctataatttatgaattctctaatagactctaccatatgtgtgataggcgttctgtcttctgtaatgttgagagaaagcatgatgcaaatgctgtggtttgcgatcctggcctgagtacacagctaaaatctgcatcttatactgctttgaaaagaataactggtgaggatccaggtgatgttcctgtactgatgagtggagcaggacatgatgcaatggccatgtctcatctaaccaaggtgggaatgctatttgtgcgttgtcgtggaggcatcagccattctcctgcagtacatgtattggatgatgatgtttgggcagctggaatggctgtccttgcattttttgagacactcttgtaatagtggcattttgcagtgcaacctagtaggctagtttgctattcataatcccattttgtatatatatgtatccattcaatttctatagttgcagtaatgagaatgtatatttgcaataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="65134" stop="66714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65434" g_stop="65504" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65618" g_stop="65743" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="197" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65817" g_stop="65978" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="359" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65979" i_stop="66167" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66168" g_stop="66414" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="604" r_length="245" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E572763" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572763" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65434" e_stop="65504"/>
          <exon e_start="65618" e_stop="65743"/>
          <exon e_start="65817" e_stop="65978"/>
          <exon e_start="66168" e_stop="66414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAGGCAAGCTCTCCTTAAACTGCTGACACACAAGTTACATATTGTTGTTTGTTATTCATACAGGGTAAGTACTCCAATTTCTAGAATGTTCATTACTACATGTGCATTTATTGCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAGGTGAGTTATACTCAAACCTTGTATTTTACTACTCCAGACGTGATCTTTTTTCGTTTTCTTATCCAAGCCACCTTGTGCACCTATACTATTACATCCTATATAGGTGTTTCAAAGTTTTAACCTGGTTCATTGACACTTGAATGTAATTTTCCTTCTTATTTTTACTAAAGATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAAC</genome_strand>
        <mrna_strand>CAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG.................................................................................................................GTGACATTCACCGTAGATGTACGTGCGATGGATGACTCAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAATGTTGAGAGAAAG.........................................................................CATGATGCAAATGCTGTGGTTTGCGATCCTGGCCTGAGTACACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGGTGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG.............................................................................................................................................................................................GTGGGAATGCTATTTGTGCGTTGTCGTGGAGGCATCAGCCATTCTCCTGCAGTACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTTGAGACACTCTTGTAATAG-TGGCATTTTGCAGTGCAACCTAGTAGGCTAGTTTGCTATTCATAATCCCA-TTTTGTATATATATGTATCCATTCAATTTCTATAGTTGCAGTAATGAGAATGTATATTTGCAATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406970" ref_strand="+" ref_description="SGN-E406970 [PPI-5-J1]">
      <seq>ctcaggacgagaagctataatttatgaattctctaatagactctaccatatgtgtgataggcgttctgtcttctgtaatgttgagagaaagcatgatgcaaatgctgtggtttgcgatcctggcctgagtacacagctaaaatctgcatcttatactgctttgaaaagaataactggtgaggatccaggtgatgttcctgtactgatgagtggagcaggacatgatgcaatggccatgtctcatctaaccaagattggctacttttcgataggtgggaatgctatttgtgcgttgtcgtggaggcatcagccattctcctgcagaacatgtattggatgatgatgtttgggcagctggaatggctgtccttgcattttttgagacactcttgtaatagttggcattttgcagtgcaacctagtaggctagtttgctattcataatcccattttgtatatatatgtatccattcaatttctatagttgcagtaatgagaatgtatatttgcaataaaacaagttggcctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="65353" stop="66730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65653" g_stop="65743" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65817" g_stop="65978" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="253" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65979" i_stop="66148" i_length="170">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66149" g_stop="66430" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="534" r_length="281" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E406970" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65653" e_stop="65743"/>
          <exon e_start="65817" e_stop="65978"/>
          <exon e_start="66149" e_stop="66430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAGGTGAGTTATACTCAAACCTTGTATTTTACTACTCCAGACGTGATCTTTTTTCGTTTTCTTATCCAAGCCACCTTGTGCACCTATACTATTACATCCTATATAGGTGTTTCAAAGTTTTAACCTGGTTCATTGACACTTGAATGTAATTTTCCTTCTTATTTTTACTAAAGATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTACT</genome_strand>
        <mrna_strand>CTCAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAATGTTGAGAGAAAG.........................................................................CATGATGCAAATGCTGTGGTTTGCGATCCTGGCCTGAGTACACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGGTGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG..........................................................................................................................................................................ATTGGCTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGTGGAGGCATCAGCCATTCTCCTGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTTGAGACACTCTTGTAATAGTTGGCATTTTGCAGTGCAACCTAGTAGGCTAGTTTGCTATTCATAATCCCA-TTTTGTATATATATGTATCCATTCAATTTCTATAGTTGCAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGGCCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420934" ref_strand="-" ref_description="SGN-E420934 [STM-32-A15]">
      <seq>ctcaggacgagaagctataatttatgaattctttaatagactctaccatatgtgtgataggcgttctgtcttctgtaatgttgagagaaagcatgatgcaaatgctgtggtttgcgatcctggcctgagtacacagctaaaatctgcatcttatactgctttgaaaagaataactggtgaggatccaggtgatgttcctgtactgatgagtggagcaggacatgatgcaatggccatgtttcatttaaccaagattggctacttttcgataggtgggaatgctatttgtgcgttgtcgtggaggcatcagccattttcctgcagaacatgtattggatgatgatgtttgggcagctggaatggctgtccttgcattttttgagacactcttgtaatagttggcattttgcagtgcaacctagtaggctagtttgctattcataatcccattttgtatatatatgtatccattcaatttctatagttgcagtaatgagaatgtatatttgcaataaaacaagttggcctgttcgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="65353" stop="66727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65653" g_stop="65743" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65817" g_stop="65978" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="253" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65979" i_stop="66148" i_length="170">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.673" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66149" g_stop="66424" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="528" r_length="275" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="545"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E420934" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420934" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65653" e_stop="65743"/>
          <exon e_start="65817" e_stop="65978"/>
          <exon e_start="66149" e_stop="66424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGGTGAGAGATTCTTAGATCATATGTAGCGAATTCTGATGCATGTTCATGACTAACGCTTGTCTTGTTGATTTAGCATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAGGTGAGTTATACTCAAACCTTGTATTTTACTACTCCAGACGTGATCTTTTTTCGTTTTCTTATCCAAGCCACCTTGTGCACCTATACTATTACATCCTATATAGGTGTTTCAAAGTTTTAACCTGGTTCATTGACACTTGAATGTAATTTTCCTTCTTATTTTTACTAAAGATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCT</genome_strand>
        <mrna_strand>CTCAGGACGAGAAGCTATAATTTATGAATTCTTTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAATGTTGAGAGAAAG.........................................................................CATGATGCAAATGCTGTGGTTTGCGATCCTGGCCTGAGTACACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGGTGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTTTCATTTAACCAAG..........................................................................................................................................................................ATTGGCTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGTGGAGGCATCAGCCATTTTCCTGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTTGAGACACTCTTGTAATAGTTGGCATTTTGCAGTGCAACCTAGTAGGCTAGTTTGCTATTCATAATCCCA-TTTTGTATATATATGTATCCATTCAATTTCTATAGTTGCAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586782" ref_strand="+" ref_description="SGN-E586782 [75617]">
      <seq>cctcgtgccgaattcggcacgagggtactgatgagtggagcaggacatgatgcaatggccatgtctcatctaaccaaggtgggaatgctatttgtgcgttgtcgtggaggcatcagccattctcctgcagaacatgtattggatgatgatgtttgggcagctggaatggctgtccttgcattttttgagacactcttgtaatagtggcattttgcagtgcaacctagtaggctagtttgctattcataatcccattttgtatatatatgtatccattcaatttctatagttgcagtaatgagaatgtatatttgcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="65625" stop="66716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65925" g_stop="65978" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="78" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65979" i_stop="66167" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66168" g_stop="66419" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="328" r_length="250" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E586782" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65925" e_stop="65978"/>
          <exon e_start="66168" e_stop="66419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAGGTGAGTTATACTCAAACCTTGTATTTTACTACTCCAGACGTGATCTTTTTTCGTTTTCTTATCCAAGCCACCTTGTGCACCTATACTATTACATCCTATATAGGTGTTTCAAAGTTTTAACCTGGTTCATTGACACTTGAATGTAATTTTCCTTCTTATTTTTACTAAAGATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTT</genome_strand>
        <mrna_strand>GTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG.............................................................................................................................................................................................GTGGGAATGCTATTTGTGCGTTGTCGTGGAGGCATCAGCCATTCTCCTGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTTGAGACACTCTTGTAATAG-TGGCATTTTGCAGTGCAACCTAGTAGGCTAGTTTGCTATTCATAATCCCA-TTTTGTATATATATGTATCCATTCAATTTCTATAGTTGCAGTAATGAGAATGTATATTTGCAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543439" ref_strand="-" ref_description="SGN-E543439 [TUS-65-E3]">
      <seq>tttttttttttgttttttttgatgaaaacatactggctttggtaatacaaattagttgttgtataacatctcaaaccatcatggactggttcaaggctcaaggccttgcatgtcattggcaagttttaaaaaataaatgcctaatacagttagcccttgtaactaggataaaagattgcaggctggtttcagtcaaaagaaatgctgatctataactcttatccacttactttacaataggaggctgagctaattgttgtagctgatggacgacgtgtgacatcctcggacgcattgatggtacatgttgtgtacaagaataaacaagatcaacaactttttggatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="67559" stop="69006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67858" g_stop="67878" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67879" i_stop="68378" i_length="500">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68379" g_stop="68706" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="349" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E543439" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543439" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67858" e_stop="67878"/>
          <exon e_start="68379" e_stop="68706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTTTGTTTTTTTTGGTGTAGTAGTATATATTTGTGTATAGGGGATGGTGAGTGGGTAGTTTAGTGCATTTTTTTTATAATATAATATAATATAAAATACTTTTAAACGAATAAAAATTGAGTGGCTAATAATAAATTATAAATAAGAAATGCTAGCTTATTTATTAAACTAAAAATAAAATAATTTTTTTTGTTATTTTCGAATCTTTTTAAATAAAATAAAAATATCTAATTTATATATAAAAGCAATATTTATGTACTAAAAATAGTATAGTATCTTAAAGTTCAATAAAAAATTACGTGTCTATAATTTGTAATGGAAAGAACTTCAAAATAAAGTTTATGAAGTCTTGTAGAAAGACCATTTGGAAAAACTTTAGCAAGATTTCATGAAAATTTCATGGACATTTTATTACATTATTTGTAATGCATAGTGATAGTTTTAACACAGGAAACAGAAACAAATTATAGAAATATAGGTGTTACAAGTAAACAATGCAAAGCAGCAGCAGCAGATGAAAACATACTGGCTTTGGTAATACAAATTAGTTGTTGTATAACATCTCAAACCATCATGGACTGGTTCAAGGCTCAAGGCCTTGCATGTCATTGGCAAGTTTTAAAAAATAAATGCCTAATACAGTTAGCCCTTGTAACTAGGATAAAAGATTGCAGGCTGGTTTCAGTCAAAAGAAATGCTGATCTATAACTCTTATCCACTTACTTTACAATAGGAGGCTGAGCTAATTGTTGTAGCTGATGGACGACGTGTGACATCCTCGGACGCATTGATGGTACATGTTGTGTACAAGAATAAACAAGATCAACAACTTTTTGGATGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTGTTTTTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAACATACTGGCTTTGGTAATACAAATTAGTTGTTGTATAACATCTCAAACCATCATGGACTGGTTCAAGGCTCAAGGCCTTGCATGTCATTGGCAAGTTTTAAAAAATAAATGCCTAATACAGTTAGCCCTTGTAACTAGGATAAAAGATTGCAGGCTGGTTTCAGTCAAAAGAAATGCTGATCTATAACTCTTATCCACTTACTTTACAATAGGAGGCTGAGCTAATTGTTGTAGCTGATGGACGACGTGTGACATCCTCGGACGCATTGATGGTACATGTTGTGTACAAGAATAAACAAGATCAACAACTTTTTGGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301430" ref_strand="-" ref_description="SGN-E301430 [cLEX-8-K2]">
      <seq>tttttttttttgttttttttgatgaaaacatactggctttggtaatacaaattagttgttgtataacatctcaaaccatcatggactggttcaaggctcaaggccttgcatgtcattggcaagttttaaaaaataaatgcctaatacagttagcccttgtaactaggataaaagattgcaggctggtttcagtcaaaagaaatgctgatctataactcttatccacttactttacaataggaggctgagctaattgttgtagattatgatgttccgtgtatcaccagaggccgcattgatggtacatgttgtgtacaagaataaacaagatcaacaactttttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="67559" stop="69005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67858" g_stop="67878" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67879" i_stop="68378" i_length="500">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68379" g_stop="68705" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="349" r_length="328" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E301430" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301430" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67858" e_stop="67878"/>
          <exon e_start="68379" e_stop="68705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTTTGTTTTTTTTGGTGTAGTAGTATATATTTGTGTATAGGGGATGGTGAGTGGGTAGTTTAGTGCATTTTTTTTATAATATAATATAATATAAAATACTTTTAAACGAATAAAAATTGAGTGGCTAATAATAAATTATAAATAAGAAATGCTAGCTTATTTATTAAACTAAAAATAAAATAATTTTTTTTGTTATTTTCGAATCTTTTTAAATAAAATAAAAATATCTAATTTATATATAAAAGCAATATTTATGTACTAAAAATAGTATAGTATCTTAAAGTTCAATAAAAAATTACGTGTCTATAATTTGTAATGGAAAGAACTTCAAAATAAAGTTTATGAAGTCTTGTAGAAAGACCATTTGGAAAAACTTTAGCAAGATTTCATGAAAATTTCATGGACATTTTATTACATTATTTGTAATGCATAGTGATAGTTTTAACACAGGAAACAGAAACAAATTATAGAAATATAGGTGTTACAAGTAAACAATGCAAAGCAGCAGCAGCAGATGAAAACATACTGGCTTTGGTAATACAAATTAGTTGTTGTATAACATCTCAAACCATCATGGACTGGTTCAAGGCTCAAGGCCTTGCATGTCATTGGCAAGTTTTAAAAAATAAATGCCTAATACAGTTAGCCCTTGTAACTAGGATAAAAGATTGCAGGCTGGTTTCAGTCAAAAGAAATGCTGATCTATAACTCTTATCCACTTACTTTACAATAGGAGGCTGAGCTAATTGTTGTAGCTGATG-GACGACGTGTGACATCCTCGGACGCATTGATGGTACATGTTGTGTACAAGAATAAACAAGATCAACAACTTTTTGGATGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTGTTTTTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAACATACTGGCTTTGGTAATACAAATTAGTTGTTGTATAACATCTCAAACCATCATGGACTGGTTCAAGGCTCAAGGCCTTGCATGTCATTGGCAAGTTTTAAAAAATAAATGCCTAATACAGTTAGCCCTTGTAACTAGGATAAAAGATTGCAGGCTGGTTTCAGTCAAAAGAAATGCTGATCTATAACTCTTATCCACTTACTTTACAATAGGAGGCTGAGCTAATTGTTGTAGATTATGATGTTCCGTGTATCACCAGAGGCCGCATTGATGGTACATGTTGTGTACAAGAATAAACAAGATCAACAACTTTTTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745845" ref_strand="+" ref_description="SGN-E745845 [GI|47104971]">
      <seq>gggaagtcattaaaaatggtggggacaaacataaggtgagaaattaactactctgtctgaacaaacactttcttcttcaaagaaaattcaactaaccattggagactccaaatgtgaactctttactcttcttttttttttttttttccatctaaacgaaaaaccctatccacaatgcccaaccccacactcaaaattagtctaggttttgctatacagtgagaacaagtgatgatggctgttaaacttccgttccctttgtttctactttcttgttttctgcttcacctctgtgcttctacttctgtttctaataagacacaagtagtttcctctgctgggaatcaaagtcatgatgatggaagatgtgatcctggttggtttaacggcccaaaagggaaaaagtgcttcaaatattatgctacgtctttgcaatggaatgaatcagagacttactgcaatggttttggaggaaacctggctgccataacatcttcagaagaactgaactttgtccagaagctctgtggcaatgatagtaacggatgctgggttggtggaaggagcatcaatatcacagctgggttgggttggaaatggtctgataatgcttctagctggaatgagagtattgctcctaagacaactttggactcaagttgcaaaaatttctcatgctatggctttaagtcggtggatttgtgtacatcgataatcagtggtgctattatagctgagagatgcaatgtaactcatgcttctatatgcacacttgatgctgggagcaagtgtcgccatatgcggtgccacagggagtatctcattattcttgcagttgttagtgggttgatcctttgcactactttggctattgtgatatggcttcttgtatttaggcgaagtaaaagacgcaaaagatcattgcgtgcttcattagcattagttcccccgtcttggaaaattttcagtcgtgatgaagtaaagtccatgacaaagaatttcagtgaagcaaatcgtctccttggggacgccaaaacaggtggtacctatagtgggcttttacctgatggttcaagggtggctgtgaaaagattgaagaggtgcggtattcagaggaagaaagagttctactctgagattggaagggttgcaagacttcatcattcaaatctggtatctatcaaaggatgttgctatcatcatggtgaccgctatattctgtacgagttcatcatcaatggacccctggataggtggctacaccatattcctagaggaggtaggagtttggactggagcatgagaatgaaggtcgccaccacccttgctcaagggattgcgtttcttcatgacaaaatgaagccacaagttgtgcatagggatatccgtgcaagcaatgtccttcttgacgaagaatttggcgcccatctaatgggagttggtctgtctaagtttgtgccatgggaaatcatgcacgagaggagagtcatggcaggtggtactcatgggtatcttgctccggagtttgtttacagaaatgagcttactacaaagagtgacgtctacagctttggagtcctcttgcttgaaataattagtggacgaagaccagcacaggcagtagattctgttggatggcaaagtatatttgaatgggccacgcctctggtgcaagctcatcgatatgttgaactcttggatcctctcatatcatcttcttcctcttctcagattcctgaagttggagtcatccaaaaagttgttgatcttgtttattcttgtacacaacatgtaccatcaatgcgtccgaggatgtcacacgtcgtccatcagctacaacaattagctcagcctcctattgtaaagtaagtggataagagttatagatcagcatttcttttgactgaaaccagcctgcaatcttttatcctagttacaagggctaactgtattaggcatttattttttaaaacttgccaatgacatgcaaggccttgagccttgaaccagtccatgatggtttgagatgttatacaacaactaatttgtattaccaaagccagtatgttttcatctgctgctgctgctttgcattgtttacttgtaacacctatatttctataatttgtttctgtttcctgtgtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="73609" stop="68004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73308" g_stop="73007" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="306" r_length="304" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73006" i_stop="72875" i_length="132">
            <donor d_prob="0.417" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72874" g_stop="72820" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="361" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72819" i_stop="71831" i_length="989">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71830" g_stop="71411" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="781" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71410" i_stop="71163" i_length="248">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71162" g_stop="70604" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="1340" r_length="559" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70603" i_stop="69113" i_length="1491">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69112" g_stop="68293" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1341" r_stop="2160" r_length="820" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E745845" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2156</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73308" e_stop="73007"/>
          <exon e_start="72874" e_stop="72820"/>
          <exon e_start="71830" e_stop="71411"/>
          <exon e_start="71162" e_stop="70604"/>
          <exon e_start="69112" e_stop="68293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCATTAAAAATGGTGGGGACAAACATAAGGTGAGAAATTAACTACTCTGTCTGAACAAACACTTTCTTCTTCAAAGAAAATTCAACTAACCATTGGAGACTCCAAATGTGAACTCTTTACTCTTC--TTTTTTTTTTTTTTCCATCTAAACGAAAAACCCTATCCACAATGCCCAACCCCACACTCAAAATTAGTCTAGGTTTTGCTATACAGTGAGAACAAGTGATGATGGCTGTTAAACTTCCGTTCCCTTTGTTTCTACTTTCTTGTTTTCTGCTTCACCTCTGTGCTTCTACTTCTGTAAGTAAAGAAAAGATTATAGTAATAACTTTTTATTTAGAGAAAAGGGTGTCTGAATATGTTGTCAGAATTCATTTTAGTGTGTGAATTTGGAGAAAGTTTTGATTTTTATTTTTTTGATTTTTTTTTCAGGTTTCTAATAAGACACAAGTAGTTTCCTCTGCTGGGAATCAAAGTCATGATGATGGTAATGTTTTGGAATTAATTAGATTATTGTTCTGTCTATTTTCTTTGAACTGATAGATTGGCTTGTGCTGATTAGATTAGAGCTCTTTTCAGAATCAGTAATGGAGTTGCATCTATAATCATCTTTTCAACTTAATGTTCAACTACTCTATGTTACTTTGTGTATAATATGTTGGGATTTCTTACTGGTGCTTCTTATGTAATGCGTGTATATCTATGTGCCAATTGCTTATTTAAACTAGCATAGTGAACTTTTGGATTTGAAGCAAATAAAGGATGACAAATACAATCTTGTTTATCAAGTTTCTATAGGTTTAAGGTCTACAAGTTCGGGTGTTTTGTGCCAAACTATCATTCATAAATCAAGATTTTGAAAACTACGTCACTTCCCAGCATCATTAAGCTCAGGCCATAAAAGACTGTCTTGCAACTAGTTATCCCACAAAAATAGAAGATGAACTTGCAACTATTTATTTATCAGCTTCCTACTTCTTCTTAAAAAATTAATTGACCAGCCTCTCATTTCCAGTTTGCAAAGTTATGGATTTCCATTCCTTCAAGACAGTTGTTCTTGGAATATTCTTAGAACAATATTCTATTTGACTGATCGATTATCCTTCTAAGAAATCCTGGTGGTCATAATCACCTGATTGAATTTTATTTTTTCGGTCGAGAAAGGAGCAGACGTAGATTCTGCTCATTTCATGCTTAAAGGCATGTTTAGGTTACTCTTAAAGTGAAACTTTGGTTCTATTTGAGGGAGATAACATATATGCTTTTATGGTGGATCAATGATGGCGTTGATGAATAATGTTGTCCAGTTCCTTTCCTATTGAGGAACTCCTCCCTTGGATTATATTAATACACTAGTTCAACTGGAACTTATTTGGACCTCTCAACGTGGTTTTCTTAGTGTATATTTTTTGTTTTTACCGGTCAAGTTATTATGTCTCATCTCTTTGGCACCGTTGTTTATTGTTTCGCAAGCAGGAAGATGTGATCCTGGTTGGTTTAACGGCCCAAAAGGGAAAAAGTGCTTCAAATATTATGCTACGTCTTTGCAATGGAATGAATCAGAGACTTACTGCAATGGTTTTGGAGGAAACCTGGCTGCCATAACATCTTCAGAAGAACTGAACTTTGTCCAGAAGCTCTGTGGCAATGATAGTAACGGATGCTGGGTTGGTGGAAGGAGCATCAATATCACAGCTGGGTTGGGTTGGAAATGGTCTGATAATGCTTCTAGCTGGAATGAGAGTATTGCTCCTAAGACAACTTTGGACTCAAGTTGCAAAAATTTCTCATGCTATGGCTTTAAGTCGGTGGATTTGTGTACATCGATAATCAGTGGTGCTATTATAGCTGAGAGATGCAATGTAACTCATGCTTCTATATGCACACTTGATGCTGGTAAGTGATTGCAGACCAATTTATCTCTAATAGTTTCTTTCACCCAGTGTAATTTTGAAAAGTAGTAGCAAAACTCTTTCCCTGATATAGTGTGGTTATAATATGTGATTAAAAACTTCATAGTCCCCTTTTTTTTCCCCACGAGAAGTGCATTTTAGCTAACCATTATACAGGCCTACATTGTTATCTGGATAAATCTATTACATTCCTTAATTGTTTTTTATATAATCTTCTAAATTTTACATTAGGGAGCAAGTGTCGCCATATGCGGTGCCACAGGGAGTATCTCATTATTCTTGCAGTTGTTAGTGGGTTGATCCTTTGCACTACTTTGGCTATTGTGATATGGCTTCTTGTATTTAGGCGAAGTAAAAGACGCAAAAGATCATTGCGTGCTTCATTAGCATTAGTTCCCCCGTCTTGGAAAATTTTCAGTCGTGATGAAGTAAAGTCCATGACAAAGAATTTCAGTGAAGCAAATCGTCTCCTTGGGGACGCCAAAACAGGTGGTACCTATAGTGGGCTTTTACCTGATGGTTCAAGGGTGGCTGTGAAAAGATTGAAGAGGTGCGGTATTCAGAGGAAGAAAGAGTTCTACTCTGAGATTGGAAGGGTTGCAAGACTTCATCATTCAAATCTGGTATCTATCAAAGGATGTTGCTATCATCATGGTGACCGCTATATTCTGTACGAGTTCATCATCAATGGACCCCTGGATAGGTGGCTACACCATATTCCTAGAGGAGGTAGGAGTTTGGACTGGAGCATGAGAATGAAGGTCGCCACCACCCTTGCTCAAGGGATTGCGTAAGTAGTGTTCCAACATTATCTTCATGTGCATTGTAGATTAGGAATAAATATTTTAACTCATCCTTGAGGTGTATTGATTTTAGTCAGAAATGTGAGTTTATTCTTTAAATTTTATCATACTTCCATTCTTAGTCATGAGTATGAACTCATATATACATGTTTAGGTTGATGTCCAATGAAGATGTTATTGTGGAAGTCAAACAAGGGTGAAAATAGATGATAAGAATGCATTATCTATATTGTTAAGAAAAAAAGGTATTATACCTGTCCTGCAATATTCCTTTGCCTATTTTCTTTTTTCTTCTCTAGATATTTCATTCAGAAGAAATTCAAATACTGCACATCTTGACCAAGATACTTCTTGTTAACATATAATGCAATTAATAAATGAAAGCCTTTTTGGTTTACAACATCAGTTCCAGTGCCATGTAGAATTCACTTCCTAGGGATCTACCTATCTGCTTTTCCTACTCCAGCTAGATCTTACCATTGTCAAACGTGTCTTTGCAGCACTGCCCTTCTGGCTTCTCGTGTTTTCTTTCAGGTTTGGGGTGGATCTTTCCTTTCTCAATTATCACATACTCGGTTAGGTCGCCCGTGTGTGTCTTTCAATTTAAATTGTTTAAGCAGGAAATCTCTTCATGAATCTCACTAAATATTGTAGGAAAGCTATGATTGATTTTCTATTCGGGGATTCATTATTAAGTATTATGACCCTATTTAGGTGACAGAATTGTTGAACTTTTATCTAGTGAATATTTCCTTGACATGGAAATTATGGCGAATAAATTTTTCAGGGGTTTGTGAGACTACTCAGACCTAACCCCCAACAACAAATATACATGGAAGAAATATTGAAGTGTACAAAAAGAAGCCAATATATTATCCAATTATTCACGATGAGATAGTGAAGTAATCAGCATAAGATAGACAAAACCTTAGGCTTATCTACATCACCAGGTTTAATATATGCAATGCATTATGTATGGTCCCTGGTAGTTTAACTTTTCATGGACTTCTTTATTAAGAGGTATTATTTTCCATAATTTATTCAGTGTAAGTTGAAAAATATAGGCCACTTGAGTAAGCTGGGTTCGTTTTATAATGTACATACTTTTAAAGATTTCAATAGTTTGCAAGTACTTTGTAATTTTTATATTCTACAAGGAATTCAGACAGAAGTGAGTGAGAAAAGATGAAATACTTGAGGAAATGGATACCAGCGACATCTTAGTAAGAAAATAAAAACTGCATATTACTGTCCTGTTGTCTTCATGAGTTTTTGTTCCAGTCTGGTTGTGTTATGGTTGTATTTTTAACCATGAAAGGTGGTGACAGTTTTAAGACTCTGTTTTGTGCCACTGTCTCAGCTATTGCATAAGAGGAAGTGAGAGTGGCCAAAAGCATGACATCGTTTGTTTGCTAATGTCTATGATGGCAGTTTCTTTGCTTATATTGTTTAGTGCTTACTTCCATCAAATGTGACAGGTTTCTTCATGACAAAATGAAGCCACAAGTTGTGCATAGGGATATCCGTGCAAGCAATGTCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAGCCAGTATGTTTTCATCTGCTGCTGCTGCTTTGCATTGTTTACTTGTAACACCTATATTTCTATAATTTGTTTCTGTTTCCTGTGTTAAAACTATCACTATG</genome_strand>
        <mrna_strand>GAAGTCATTAAAAATGGTGGGGACAAACATAAGGTGAGAAATTAACTACTCTGTCTGAACAAACACTTTCTTCTTCAAAGAAAATTCAACTAACCATTGGAGACTCCAAATGTGAACTCTTTACTCTTCTTTTTTTTTTTTTTTTCCATCTAAACGAAAAACCCTATCCACAATGCCCAACCCCACACTCAAAATTAGTCTAGGTTTTGCTATACAGTGAGAACAAGTGATGATGGCTGTTAAACTTCCGTTCCCTTTGTTTCTACTTTCTTGTTTTCTGCTTCACCTCTGTGCTTCTACTTCT....................................................................................................................................GTTTCTAATAAGACACAAGTAGTTTCCTCTGCTGGGAATCAAAGTCATGATGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGTGATCCTGGTTGGTTTAACGGCCCAAAAGGGAAAAAGTGCTTCAAATATTATGCTACGTCTTTGCAATGGAATGAATCAGAGACTTACTGCAATGGTTTTGGAGGAAACCTGGCTGCCATAACATCTTCAGAAGAACTGAACTTTGTCCAGAAGCTCTGTGGCAATGATAGTAACGGATGCTGGGTTGGTGGAAGGAGCATCAATATCACAGCTGGGTTGGGTTGGAAATGGTCTGATAATGCTTCTAGCTGGAATGAGAGTATTGCTCCTAAGACAACTTTGGACTCAAGTTGCAAAAATTTCTCATGCTATGGCTTTAAGTCGGTGGATTTGTGTACATCGATAATCAGTGGTGCTATTATAGCTGAGAGATGCAATGTAACTCATGCTTCTATATGCACACTTGATGCTG........................................................................................................................................................................................................................................................GGAGCAAGTGTCGCCATATGCGGTGCCACAGGGAGTATCTCATTATTCTTGCAGTTGTTAGTGGGTTGATCCTTTGCACTACTTTGGCTATTGTGATATGGCTTCTTGTATTTAGGCGAAGTAAAAGACGCAAAAGATCATTGCGTGCTTCATTAGCATTAGTTCCCCCGTCTTGGAAAATTTTCAGTCGTGATGAAGTAAAGTCCATGACAAAGAATTTCAGTGAAGCAAATCGTCTCCTTGGGGACGCCAAAACAGGTGGTACCTATAGTGGGCTTTTACCTGATGGTTCAAGGGTGGCTGTGAAAAGATTGAAGAGGTGCGGTATTCAGAGGAAGAAAGAGTTCTACTCTGAGATTGGAAGGGTTGCAAGACTTCATCATTCAAATCTGGTATCTATCAAAGGATGTTGCTATCATCATGGTGACCGCTATATTCTGTACGAGTTCATCATCAATGGACCCCTGGATAGGTGGCTACACCATATTCCTAGAGGAGGTAGGAGTTTGGACTGGAGCATGAGAATGAAGGTCGCCACCACCCTTGCTCAAGGGATTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTCATGACAAAATGAAGCCACAAGTTGTGCATAGGGATATCCGTGCAAGCAATGTCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAGCCAGTATGTTTTCATCTGCTGCTGCTGCTTTGCATTGTTTACTTGTAACACCTATATTTCTATAATTTGTTTCTGTTTCCTGTGTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351549" ref_strand="+" ref_description="SGN-E351549 [cTOS-12-K14]">
      <seq>tccttcttgacgaagaatttggcgcccatctaatgggagttggtctgtctaagtttgtgccatgggaaatcatgcacgagaggagagtcatggcaggtggtactcatgggtatcttgctccggagtttgtttacagaaatgagcttactacaaagagtgacgtctacagctttggagtcctcttgcttgaaataattagtggacgaagaccagcacaggcagtagattctgttggatggcaaagtatatttgaatgggccacgcctctggtgcaagctcatcgatatgttgaactcttggatcctctcatatcatcttcttcctcttctcagattcctgaagttggagtcatccaaaaagttgttgatcttgtttattcttgtacacaacatgtaccatcaatgcgtccgaggatgtcacacgtcgtccatcagctacaacaattagctcagcctcctattgtaaagtaagtggataagagttatagatcagcatttcttttgactgaaaccagcctgcaatcttttatcctagttacaagggctaactgtattaggcatttattttttaaaacttgccaatgacatgcaaggccttgagccttgaaccagtccatgatggtttgagatgttatacaacaactaatttgtattaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="69353" stop="68095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69053" g_stop="68391" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E351549" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69053" e_stop="68391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAGCCA</genome_strand>
        <mrna_strand>TCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353744" ref_strand="+" ref_description="SGN-E353744 [cTOS-10-F15]">
      <seq>tccttcttgacgaagaatttggcgcccatctaatgggagttggtctgtctaagtttgtgccatgggaaatcatgcacgagaggagagtcatggcaggtggtactcatgggtatcttgctccggagtttgtttacagaaatgagcttactacaaagagtgacgtctacagctttggagtcctcttgcttgaaataattagtggacgaagaccagcacaggcagtagattctgttggatggcaaagtatatttgaatgggccacgcctctggtgcaagctcatcgatatgttgaactcttggatcctctcatatcatcttcttcctcttctcagattcctgaagttggagtcatccaaaaagttgttgatcttgtttattcttgtacacaacatgtaccatcaatgcgtccgaggatgtcacacgtcgtccatcagctacaacaattagctcagcctcctattgtaaagtaagtggataagagttatagatcagcatttcttttgactgaaaccagcctgcaatcttttatcctagttacaagggctaactgtattaggcatttattttttaaaacttgccaatgacatgcaaggccttgagccttgaaccagtccatgatggtttgagatgttatacaacaactaatttgtattaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="69353" stop="68095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69053" g_stop="68391" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E353744" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69053" e_stop="68391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAGCCA</genome_strand>
        <mrna_strand>TCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266175" ref_strand="-" ref_description="SGN-E266175 [cLEI-3-C15]">
      <seq>agcttactacaaagagtgacgtctacagctttggagtcctcttgcttgaaataattagtggacgaagaccagcacaggcagtagattctgttggatggcaaagtatatttgaatgggccacgcctctggtgcaagctcatcgatatgttgaactcttggatcctctcatatcatcttcttcctcttctcagattcctgaagttggagtcatccaaaaagttgttgatcttgtttattcttgtacacaacatgtaccatcaatgcgtccgaggatgtcacacgtcgtccatcagctacaacaattagctcagcctcctattgtaaagtaagtggataagagttatagatcagcatttcttttgactgaaaccagcctgcaatcttttatcctagttacaagggctaactgtattaggcatttattttttaaaacttgccaatgacatgcaaggccttgagccttgaaccagtccatgatggtttgagatgttatacaacaactaatttgtattaccaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="69212" stop="68095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68912" g_stop="68391" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="534"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E266175" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68912" e_stop="68391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAGCCA</genome_strand>
        <mrna_strand>AGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609307" ref_strand="+" ref_description="SGN-E609307 [25312]">
      <seq>gtggagtcatccaaaaagttgttgatcttggtttattcttgtacacaacatgtaccatcaatgcgtccgaggatgtcacatgtcgtccatcagctacaacaattagctcagccccctattgtaaagtaagtggataagaattatagttcagcatttcttttgactgaaaccagcctgcaatcttttatcctagttgcaagggctaattgtattaggcattatttttgaacttgacatgcaaggccttgaggcttgaaccagtccatgatggttgagatgtaatacaactactaatttgtatcactaaagccagtatgcttttcatctgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="69010" stop="68074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68711" g_stop="68391" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="340"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E609307" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68711" e_stop="68391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGTCATCCAAAAAGTTGTTGATCTT-GTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAGCCA</genome_strand>
        <mrna_strand>GTGGAGTCATCCAAAAAGTTGTTGATCTTGGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACATGTCGTCCATCAGCTACAACAATTAGCTCAGCCCCCTATTGTAAAGTAAGTGGATAAGAATTATAGTTCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTGCAAGGGCTAATTGTATTAGGCA-TTA-TTTTT-GAAC-T-----TGACATGCAAGGCCTTGAGGCTTGAACCAGTCCATGATGG-TTGAGATGTAATACAACTACTAATTTGTATCACTAAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356174" ref_strand="+" ref_description="SGN-E356174 [cTOS-20-G18]">
      <seq>tccttcttgacgaagaatttggcgcccatctaatgggagttggtctgtctaagtttgtgccatgggaaatcatgcacgagaggagagtcatggcaggtggtactcatgggtatcttgctccggagtttgtttacagaaatgagcttactacaaagagtgacgtctacagctttggagtcctcttgcttgaaataattagtggacgaagaccagcacaggcagtagattctgttggatggcaaagtatatttgaatgggccacgcctctggtgcaagctcatcgatatgttgaactcttggatcctctcatatcatcctcctcctcctctcagaatccttgaagtggaatccttccaaaaggtggtggatttggttaatcctggaacccaacttgaaccttcatggcgtccaaggatgtcacacgtcgtccttcagttacaacaattagctcagcctcctatggtaaagtaagtgaataaaagtaataaatcagcatttcttttgactgaaaccagcctgcaaccttttatcctagttacaagggctaactgtattaggcattaattttttaaaacttgccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="69353" stop="68171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69053" g_stop="68471" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E356174" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69053" e_stop="68471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCC-TGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATG</genome_strand>
        <mrna_strand>TCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCCTCCTCCTCCTCTCAGAATCCTTGAAGTGGAATCCTTCCAAAAGGTGGTGGATTTGGTTAATCCTGGAACCCAACTTGAACCTTCATGGCGTCCAAGGATGTCACACGTCGTCCTTCAGTTACAACAATTAGCTCAGCCTCCTATGGTAAAGTAAGTGAATAAAAGTAATAAATCAGCATTTCTTTTGACTGAAACCAGCCTGCAACCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTAATTTTTTAAAACTTGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329459" ref_strand="+" ref_description="SGN-E329459 [cTOD-11-E8]">
      <seq>ggatgttgctatcatcatggtgaccgctatattctgtacgagttcatcatcaatggacccctggataggtggctacaccatattcctagaggaggtaggagtttggactggagcatgagaatgaaggtcgccaccacccttgctcaagggattgcgtttcttcatgacaaaatgaagccacaagttgtgcatagggatatccgtgcaagcaatgtccttcttgacgaagaatttggcgcccatctaatgggagttggtctgtctaagtttgtgccatgggaaatcatgcacgagaggagagtcatggcaggtggtactcatgggtatcttgctccggagtttgtttacagaaatgagcttactacaaagagtgacgtctacagctttggagtcctcttgcttgaaataattagtggacgaagaccagcacaggcagtagattctgttggatggcaaagtatatttgaatgggccacgcctctggtgcaagctcatcgatatgttgaactcttggatcctctcatatcatcttcttcctcttctcagattcctgaagttggagtcatccaaaaagttgttgatcttgtttattcttgtacacaacatgtaccatcaatgcgtccgaggatgtcacacgtcgtccatcagctacaacaattagctcagcctcctattgtaaagtaagtggataagagttatagatcagcatttcttttgactgaaaccagcctgcaatcttttatcctagttacaagggctaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="71058" stop="68204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70758" g_stop="70604" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70603" i_stop="69113" i_length="1491">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69112" g_stop="68504" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="764" r_length="609" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E329459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70758" e_stop="70604"/>
          <exon e_start="69112" e_stop="68504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTTGCTATCATCATGGTGACCGCTATATTCTGTACGAGTTCATCATCAATGGACCCCTGGATAGGTGGCTACACCATATTCCTAGAGGAGGTAGGAGTTTGGACTGGAGCATGAGAATGAAGGTCGCCACCACCCTTGCTCAAGGGATTGCGTAAGTAGTGTTCCAACATTATCTTCATGTGCATTGTAGATTAGGAATAAATATTTTAACTCATCCTTGAGGTGTATTGATTTTAGTCAGAAATGTGAGTTTATTCTTTAAATTTTATCATACTTCCATTCTTAGTCATGAGTATGAACTCATATATACATGTTTAGGTTGATGTCCAATGAAGATGTTATTGTGGAAGTCAAACAAGGGTGAAAATAGATGATAAGAATGCATTATCTATATTGTTAAGAAAAAAAGGTATTATACCTGTCCTGCAATATTCCTTTGCCTATTTTCTTTTTTCTTCTCTAGATATTTCATTCAGAAGAAATTCAAATACTGCACATCTTGACCAAGATACTTCTTGTTAACATATAATGCAATTAATAAATGAAAGCCTTTTTGGTTTACAACATCAGTTCCAGTGCCATGTAGAATTCACTTCCTAGGGATCTACCTATCTGCTTTTCCTACTCCAGCTAGATCTTACCATTGTCAAACGTGTCTTTGCAGCACTGCCCTTCTGGCTTCTCGTGTTTTCTTTCAGGTTTGGGGTGGATCTTTCCTTTCTCAATTATCACATACTCGGTTAGGTCGCCCGTGTGTGTCTTTCAATTTAAATTGTTTAAGCAGGAAATCTCTTCATGAATCTCACTAAATATTGTAGGAAAGCTATGATTGATTTTCTATTCGGGGATTCATTATTAAGTATTATGACCCTATTTAGGTGACAGAATTGTTGAACTTTTATCTAGTGAATATTTCCTTGACATGGAAATTATGGCGAATAAATTTTTCAGGGGTTTGTGAGACTACTCAGACCTAACCCCCAACAACAAATATACATGGAAGAAATATTGAAGTGTACAAAAAGAAGCCAATATATTATCCAATTATTCACGATGAGATAGTGAAGTAATCAGCATAAGATAGACAAAACCTTAGGCTTATCTACATCACCAGGTTTAATATATGCAATGCATTATGTATGGTCCCTGGTAGTTTAACTTTTCATGGACTTCTTTATTAAGAGGTATTATTTTCCATAATTTATTCAGTGTAAGTTGAAAAATATAGGCCACTTGAGTAAGCTGGGTTCGTTTTATAATGTACATACTTTTAAAGATTTCAATAGTTTGCAAGTACTTTGTAATTTTTATATTCTACAAGGAATTCAGACAGAAGTGAGTGAGAAAAGATGAAATACTTGAGGAAATGGATACCAGCGACATCTTAGTAAGAAAATAAAAACTGCATATTACTGTCCTGTTGTCTTCATGAGTTTTTGTTCCAGTCTGGTTGTGTTATGGTTGTATTTTTAACCATGAAAGGTGGTGACAGTTTTAAGACTCTGTTTTGTGCCACTGTCTCAGCTATTGCATAAGAGGAAGTGAGAGTGGCCAAAAGCATGACATCGTTTGTTTGCTAATGTCTATGATGGCAGTTTCTTTGCTTATATTGTTTAGTGCTTACTTCCATCAAATGTGACAGGTTTCTTCATGACAAAATGAAGCCACAAGTTGTGCATAGGGATATCCGTGCAAGCAATGTCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTG</genome_strand>
        <mrna_strand>GGATGTTGCTATCATCATGGTGACCGCTATATTCTGTACGAGTTCATCATCAATGGACCCCTGGATAGGTGGCTACACCATATTCCTAGAGGAGGTAGGAGTTTGGACTGGAGCATGAGAATGAAGGTCGCCACCACCCTTGCTCAAGGGATTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTCATGACAAAATGAAGCCACAAGTTGTGCATAGGGATATCCGTGCAAGCAATGTCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335678" ref_strand="+" ref_description="SGN-E335678 [cTOE-8-A22]">
      <seq>gttggtctgtctaagtttgtgccatgggaaatcatgcacgagaggagagtcatggcaggtggtactcatgggtatcttgctccggagtttgtttacagaaatgagcttactacaaagagtgacgtctacagctttggagtcctcttgcttgaaataattagtggacgaagaccagcacaggcagtagattctgttggatggcaaagtatatttgaatgggccacgcctctggtgcaagctcatcgatatgttgaactcttggatcctctcatatcatcttcttcctcttctcagattcctgaagttggagtcatccaaaaagttgttgatcttgtttattcttgtacacaacatgtaccatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="69315" stop="68350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69015" g_stop="68650" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E335678" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69015" e_stop="68650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATG</genome_strand>
        <mrna_strand>GTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339841" ref_strand="+" ref_description="SGN-E339841 [cTOF-3-G23]">
      <seq>gcccaatgaaaggagtttatgccgccggactttgacatcagtgtggaatttttgggaaatgggtggccggacgatggaatgggcggcgagagcaaaccacctggggggtatacctcggaaagtggtgatcacggcgataggtactttcgctaaggcggtggccaatctattgaacaccaccaccgtgcacaacggcgacgtccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatgtccactttagatgacccagttatgtgggcattcaaaggttttccaatttgtgatgcaaagctggctcgatgggtactggcagcggaagacatatgctttaaaaatacagtattgtcatactttttccggatcgggaaatgtataccaataacaagagggggtggaatatatcaagaacatatgaacgaagctcttgatcgtttgactgaaggagcctggctgcatacatttccagaagggaaggtctgtcaagaagatgctcctataagacgattgaagtggggaactgccagtctcattgctcgtgcccccgtgactccaattgtcttgccaattatccatcatggttttgaaaaggttatgcctgagaactatgcttttgggagaagacctccagtccctttatggaaccaggagataaaaatagtttgttggtgagccaatggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74155" stop="77867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74455" g_stop="74724" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75143" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="398" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75144" i_stop="76314" i_length="1171">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="484" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76715" g_stop="76852" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="622" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77475" g_stop="77567" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="716" r_length="94" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E339841" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74455" e_stop="74724"/>
          <exon e_start="75016" e_stop="75143"/>
          <exon e_start="76315" e_stop="76400"/>
          <exon e_start="76715" e_stop="76852"/>
          <exon e_start="77475" e_stop="77567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAATGAAAGGAGTTTATGCCGCCGGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGGGTAATTCGCCTTTTACCCTTGTATTCTTTCATCTAGTAATGGATGTTAATGTGAATTTTTTTATGCTTAGTCAATTGATCTTTTAGTACGCTCTAGGTGTTATTTTGTTACACTAAAATGGATATGCATATGATATGATATTATGTTATTCTGGAATTGAGGATTGAATTTGAAATGATCCAGTGTCACTTAACATAACCTCCATTTCATCCAGAAGTCATGAGAATGATGTATAATTTTGTCAACATTTCCTATTAAGTTTCCGCTAAATTGAAATGACATGTTTGGCTAAAGACCAACTTCCAAATGGGCAGCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAGGTAGGTTCTTGAAATGATAGCTGTCCACACACAGAAACGAACAATGGGGCTAATGCCTAAATAGCAAGGGACAATGGATTCATTTGGTTTCGGTTGTGTAGGCAGGCCTTAGGATGTTCGAATTATTGTTATTCTGTAATTTATAGTACCTGTCTAGTTATATATTTCACATTGGTTGTTTAATTCACGTGTTTCAGTACTAATTTTATCGTAAGAATAAGGTAGTGTAGCTTAGAGGATAGAGGTTATGCAGTTCCGAAAGTGTTTTAAAATCACTCTGTTGCATTTATGGCACTGCTTCATTGTTGTTATGAAGTTCATTGATTCTTTTGTGAACTTCACCAATAAATTGAGCCAATACCGTAGTTGCTTTCTCCTTTCCCTCCTGTCCAATCCTAGGAAAAGAAAATAAGAGTGGCCAAAATGCTGCGACTGTCTAACAATCTTCTGTTCTTCTTTATGCTCAAACCATTTTTGAGGAGATAAAATACGCACACATGCACACATGCATCCGTCGTATCCATATTAAGTATTGATTATGAGATTGAACCAGCGTTTATTTATATAATTCAAATTTGATCCTTGGGATTGTGATGCATTGTGTGCTTTGATCAATTTTCAGGTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAG-TTGTTGGTGAGCCAATGGAATTC</genome_strand>
        <mrna_strand>GCCCAATGAAAGGAGTTTATGCCGCCGGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC...................................................................................................................................................................................................................................................................................................TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG..........................................................................................................................................................................................................................................................................................................................CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTTGTTGGTGAGCCAATGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548612" ref_strand="+" ref_description="SGN-E548612 [TUS-62-M23]">
      <seq>cggactttgacatcagtgtggaatttttgggaaatgggtggccggacgatggaatgggcggcgagagcaaaccacctggggggtatacctcggaaagtggtgatcacggcgataggtactttcgctaaggcggtggccaatctattgaacaccaccaccgtgcacaacggcgacgtccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatgtccactttagatgacccagttatgtgggcattcaaaggttttccaatttgtgatgcaaagctggctcgatgggtactggcagcggaagacatatgctttaaaaatacagtattgtcatactttttccggatcggtgtgtaatctgttggtctgggaaatgtataccaataacaagagggggtggaatatatcaagaacatatgaacgaagctcttgatcgtttgactgaaggagcctggctgcatacatttccagaagggaaggtctgtcaagaagatgctcctataagacgattgaagtggggaactgccagtctcattgctcgtgcccccgtgactccaattgtcttgccaattatccatcatggttttgaaaaggttatgcctgagaactatgcttttgggagaagacctccagtccctttatggaaccaggagataaaaatagttgttggtgaagcaatggaaattcaccttcctgaactgcgagagatggctctatctcagtctcgggattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74180" stop="77917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74480" g_stop="74724" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75163" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="393" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75164" i_stop="76314" i_length="1151">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="479" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76715" g_stop="76852" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="617" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77475" g_stop="77617" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="760" r_length="143" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E548612" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74480" e_stop="74724"/>
          <exon e_start="75016" e_stop="75163"/>
          <exon e_start="76315" e_stop="76400"/>
          <exon e_start="76715" e_stop="76852"/>
          <exon e_start="77475" e_stop="77617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGGGTAATTCGCCTTTTACCCTTGTATTCTTTCATCTAGTAATGGATGTTAATGTGAATTTTTTTATGCTTAGTCAATTGATCTTTTAGTACGCTCTAGGTGTTATTTTGTTACACTAAAATGGATATGCATATGATATGATATTATGTTATTCTGGAATTGAGGATTGAATTTGAAATGATCCAGTGTCACTTAACATAACCTCCATTTCATCCAGAAGTCATGAGAATGATGTATAATTTTGTCAACATTTCCTATTAAGTTTCCGCTAAATTGAAATGACATGTTTGGCTAAAGACCAACTTCCAAATGGGCAGCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAGGTAGGTTCTTGAAATGATAGCTGTCCACACACAGAAACGAACAATGGGGCTAATGCCTAAATAGCAAGGGACAATGGATTCATTTGGTTTCGGTTGTGTAGGCAGGCCTTAGGATGTTCGAATTATTGTTATTCTGTAATTTATAGTACCTGTCTAGTTATATATTTCACATTGGTTGTTTAATTCACGTGTTTCAGTACTAATTTTATCGTAAGAATAAGGTAGTGTAGCTTAGAGGATAGAGGTTATGCAGTTCCGAAAGTGTTTTAAAATCACTCTGTTGCATTTATGGCACTGCTTCATTGTTGTTATGAAGTTCATTGATTCTTTTGTGAACTTCACCAATAAATTGAGCCAATACCGTAGTTGCTTTCTCCTTTCCCTCCTGTCCAATCCTAGGAAAAGAAAATAAGAGTGGCCAAAATGCTGCGACTGTCTAACAATCTTCTGTTCTTCTTTATGCTCAAACCATTTTTGAGGAGATAAAATACGCACACATGCACACATGCATCCGTCGTATCCATATTAAGTATTGATTATGAGATTGAACCAGCGTTTATTTATATAATTCAAATTTGATCCTTGGGATTGTGATGCATTGTGTGCTTTGATCAATTTTCAGGTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATC</genome_strand>
        <mrna_strand>CGGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC...................................................................................................................................................................................................................................................................................................TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG..........................................................................................................................................................................................................................................................................................................................CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAAGCAATGGAAATTCACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297097" ref_strand="+" ref_description="SGN-E297097 [cLEW-2-A13]">
      <seq>ggactttgacatcagtgtggaatttttgggaaatgggtggccggacgatggaatgggcggcgagagcaaaccacctggggggtatacctcggaaagtggtgatcacggcgataggtactttcgctaaggcggtggccaatctattgaacaccaccaccgtgcacaacggcgacgtcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74181" stop="74960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74481" g_stop="74660" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E297097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74481" e_stop="74660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTA</genome_strand>
        <mrna_strand>GGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731410" ref_strand="+" ref_description="SGN-E731410 [LA27AB07]">
      <seq>catcagtgtggaatttttgggaaatgggtggccggacgatggaatgggcggcgagagcaaaccacctggggggtatacctcggaaagtggtgatcacggcgataagtactttcgctaaggcggtggccaatctattgaacaccaccaccgtgcacaacggcgacgtccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatgtccactttagatgacccagttatgtgggcattcaaaggttttccaatttgtgatgcaaagctggctcgatgggtactggcagcggaagacatatgctttaaaaatacagtattgtcatactttttccggatcgggaaatgtataccaataacaagagggggtggaatatatcaagaacatatgaacgaagctcttgatcgtttgactgaaggagcctggctgcatacatttccagaagggaaggtctgtcaagaagatgctcctataagacgattgaagtggggaactgccagtctcattgctcgtgcccccgtgactccaattgtcttgccaattatccatcatggttttgaaaaggttatgcctgagaactatgcttttgggagaagacctccagtccctttatggaaccaggagataaaaatagttgttggtgagccaatggaattcaaccttcctgaactgcgagagatggctctatctcagtctcgggattcatcatcttccagtgggcagtggccaagaaacatcctcgggggattgaacgaagcagcacaaaaatgtctgtacatgactatatctgatcaaatccgaactaccttgggaaacttaaggaattttagtaaatcttatgccaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74190" stop="78057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74490" g_stop="74724" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75143" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="363" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75144" i_stop="76314" i_length="1171">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="449" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76715" g_stop="76852" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="587" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77475" g_stop="77757" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="870" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E731410" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74490" e_stop="74724"/>
          <exon e_start="75016" e_stop="75143"/>
          <exon e_start="76315" e_stop="76400"/>
          <exon e_start="76715" e_stop="76852"/>
          <exon e_start="77475" e_stop="77757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGGGTAATTCGCCTTTTACCCTTGTATTCTTTCATCTAGTAATGGATGTTAATGTGAATTTTTTTATGCTTAGTCAATTGATCTTTTAGTACGCTCTAGGTGTTATTTTGTTACACTAAAATGGATATGCATATGATATGATATTATGTTATTCTGGAATTGAGGATTGAATTTGAAATGATCCAGTGTCACTTAACATAACCTCCATTTCATCCAGAAGTCATGAGAATGATGTATAATTTTGTCAACATTTCCTATTAAGTTTCCGCTAAATTGAAATGACATGTTTGGCTAAAGACCAACTTCCAAATGGGCAGCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAGGTAGGTTCTTGAAATGATAGCTGTCCACACACAGAAACGAACAATGGGGCTAATGCCTAAATAGCAAGGGACAATGGATTCATTTGGTTTCGGTTGTGTAGGCAGGCCTTAGGATGTTCGAATTATTGTTATTCTGTAATTTATAGTACCTGTCTAGTTATATATTTCACATTGGTTGTTTAATTCACGTGTTTCAGTACTAATTTTATCGTAAGAATAAGGTAGTGTAGCTTAGAGGATAGAGGTTATGCAGTTCCGAAAGTGTTTTAAAATCACTCTGTTGCATTTATGGCACTGCTTCATTGTTGTTATGAAGTTCATTGATTCTTTTGTGAACTTCACCAATAAATTGAGCCAATACCGTAGTTGCTTTCTCCTTTCCCTCCTGTCCAATCCTAGGAAAAGAAAATAAGAGTGGCCAAAATGCTGCGACTGTCTAACAATCTTCTGTTCTTCTTTATGCTCAAACCATTTTTGAGGAGATAAAATACGCACACATGCACACATGCATCCGTCGTATCCATATTAAGTATTGATTATGAGATTGAACCAGCGTTTATTTATATAATTCAAATTTGATCCTTGGGATTGTGATGCATTGTGTGCTTTGATCAATTTTCAGGTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCTTGGAAAACTTAAGGAATTTTAGTAAATCTTATGCCAAGG</genome_strand>
        <mrna_strand>CATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAAGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC...................................................................................................................................................................................................................................................................................................TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG..........................................................................................................................................................................................................................................................................................................................CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCTTGGGAAACTTAAGGAATTTTAGTAAATCTTATGCCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691284" ref_strand="+" ref_description="SGN-E691284 [LH_Ea05L10]">
      <seq>cgttggattttttgggaaatgagtggccggacgatggaatgggcggcgagagcaaaccacctggggggtttacctcggaaagtggtgatcacggcgataggtactttcgctaaggcggtggccaatctactgaacaccaccaccgtgcacaacggcgacatccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatgtccactttagatgacccagttatgtgggcattcaaaggttttccaatttgtgatgcaaagctggctcgatgggtactggcagcggaagacatatgctttaaaaacacagtattgtcatactttttccggatcggtgtgtaatctgttggtctgggaaatgtataccaataacaagagggggtggaatatatcaagaacatatgaacgaagctcttgatcgtttgactgaaggagcctggctgcatacatttccagaagggaaggtctgtcaagaagatgctcctataagacgattgaagtggggaactgccagtctcgttgctcgtgcccccgtgactccaattgtcttgccaattatccatcatggttttgaaaaggttatgcctgagaactatgcttttgggagaagacctccagtccctttatggaaccaggagataaaaatagttgttggtgagccaatggaattcaaccttcctgaactgcgagagatggctctatctcaatctcgggattcatcatcttccagtgggcagtggccaagaaacatcctcgggggattgaacgaagcagcacaaaaatgtctgtacatgactatatctgatcaaatccgaactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74195" stop="78018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74494" g_stop="74724" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75163" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="378" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75164" i_stop="76314" i_length="1151">
            <donor d_prob="0.495" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="464" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76715" g_stop="76852" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="602" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77475" g_stop="77718" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="846" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E691284" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74494" e_stop="74724"/>
          <exon e_start="75016" e_stop="75163"/>
          <exon e_start="76315" e_stop="76400"/>
          <exon e_start="76715" e_stop="76852"/>
          <exon e_start="77475" e_stop="77718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGGGTAATTCGCCTTTTACCCTTGTATTCTTTCATCTAGTAATGGATGTTAATGTGAATTTTTTTATGCTTAGTCAATTGATCTTTTAGTACGCTCTAGGTGTTATTTTGTTACACTAAAATGGATATGCATATGATATGATATTATGTTATTCTGGAATTGAGGATTGAATTTGAAATGATCCAGTGTCACTTAACATAACCTCCATTTCATCCAGAAGTCATGAGAATGATGTATAATTTTGTCAACATTTCCTATTAAGTTTCCGCTAAATTGAAATGACATGTTTGGCTAAAGACCAACTTCCAAATGGGCAGCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAGGTAGGTTCTTGAAATGATAGCTGTCCACACACAGAAACGAACAATGGGGCTAATGCCTAAATAGCAAGGGACAATGGATTCATTTGGTTTCGGTTGTGTAGGCAGGCCTTAGGATGTTCGAATTATTGTTATTCTGTAATTTATAGTACCTGTCTAGTTATATATTTCACATTGGTTGTTTAATTCACGTGTTTCAGTACTAATTTTATCGTAAGAATAAGGTAGTGTAGCTTAGAGGATAGAGGTTATGCAGTTCCGAAAGTGTTTTAAAATCACTCTGTTGCATTTATGGCACTGCTTCATTGTTGTTATGAAGTTCATTGATTCTTTTGTGAACTTCACCAATAAATTGAGCCAATACCGTAGTTGCTTTCTCCTTTCCCTCCTGTCCAATCCTAGGAAAAGAAAATAAGAGTGGCCAAAATGCTGCGACTGTCTAACAATCTTCTGTTCTTCTTTATGCTCAAACCATTTTTGAGGAGATAAAATACGCACACATGCACACATGCATCCGTCGTATCCATATTAAGTATTGATTATGAGATTGAACCAGCGTTTATTTATATAATTCAAATTTGATCCTTGGGATTGTGATGCATTGTGTGCTTTGATCAATTTTCAGGTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCT</genome_strand>
        <mrna_strand>CGT-TGGATTTTTTGGGAAATGAGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTTTACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTACTGAACACCACCACCGTGCACAACGGCGACATCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC...................................................................................................................................................................................................................................................................................................TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAACACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG..........................................................................................................................................................................................................................................................................................................................CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCGTTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAATCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445863" ref_strand="+" ref_description="SGN-E445863 [cSTA-19-G13]">
      <seq>gccggacgatggaatgggcggcgagagcaaaccacctgggtggtctaccgcggaaagtggtgatcacggcgataggtactttcgctaaggtggtggccaatctactgaacaccaccaccgtgcacaacggcgacacccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatgtccacgttggatgacccagttatgtgggcattcaaaggttttccaatttgtgatgcaaagctggctcgttgggtactggcagcggaagacatatgctttaaaaatacagtattgtcatactttttccggatcggtaaatgtataccaataacaagagggggcggaatatatcaagaacatatgaatgaagctcttgatcgtttgactaacggagcctggctgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74220" stop="76702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74520" g_stop="74724" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75143" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="333" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75144" i_stop="76314" i_length="1171">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="419" r_length="86" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E445863" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74520" e_stop="74724"/>
          <exon e_start="75016" e_stop="75143"/>
          <exon e_start="76315" e_stop="76400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG</genome_strand>
        <mrna_strand>GCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGTGGTCTACCGCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGTGGTGGCCAATCTACTGAACACCACCACCGTGCACAACGGCGACACCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC...................................................................................................................................................................................................................................................................................................GTTGGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGTTGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGTATACCAATAACAAGAGGGGGCGGAATATATCAAGAACATATGAATGAAGCTCTTGATCGTTTGACTAACGGAGCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571282" ref_strand="+" ref_description="SGN-E571282 [12185]">
      <seq>cggacgatggaatgggcggcgagagcaaaccacctggtggtctaccgcggaaagtggtgatcacggcggtaggtacttttgctaaggtggtggccaatctactgaacaccaccaccgtgcacaacggcgacacccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatgtccacgttggatgacccagttatgtgggcattcaaaggttttccaatttgtgatgcaaagctggctcgttgggtactgggcagcggaagacatatgctttaaaaatacagtattgtcatactttttccggatcggtgtgtaatctgttggtctggtaaatgtataccaataacaagagggggcggaatatatcaagaacatatgaatgaagctcttgatcgtttgactaacggagcctgggctgcatacatttccagaagggaaggtctgtcaagaaaatgctcctataagacgattgaagtggggaactgccagtctcattgctcgtgcacccgtgactccaattgtcttgccaattatccatcatggttttgaaaagggttatgcctgagaactatgcttttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74222" stop="77802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74522" g_stop="74724" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75163" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="351" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75164" i_stop="76314" i_length="1151">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="437" r_length="86" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76401" i_stop="76713" i_length="313">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76714" g_stop="76852" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="577" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622">
            <donor d_prob="0.719" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77475" g_stop="77502" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="605" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E571282" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74522" e_stop="74724"/>
          <exon e_start="75016" e_stop="75163"/>
          <exon e_start="76315" e_stop="76400"/>
          <exon e_start="76714" e_stop="76852"/>
          <exon e_start="77475" e_stop="77502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACT-GGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGGGTAATTCGCCTTTTACCCTTGTATTCTTTCATCTAGTAATGGATGTTAATGTGAATTTTTTTATGCTTAGTCAATTGATCTTTTAGTACGCTCTAGGTGTTATTTTGTTACACTAAAATGGATATGCATATGATATGATATTATGTTATTCTGGAATTGAGGATTGAATTTGAAATGATCCAGTGTCACTTAACATAACCTCCATTTCATCCAGAAGTCATGAGAATGATGTATAATTTTGTCAACATTTCCTATTAAGTTTCCGCTAAATTGAAATGACATGTTTGGCTAAAGACCAACTTCCAAATGGGCAGCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAA-GGTAGGTTCTTGAAATGATAGCTGTCCACACACAGAAACGAACAATGGGGCTAATGCCTAAATAGCAAGGGACAATGGATTCATTTGGTTTCGGTTGTGTAGGCAGGCCTTAGGATGTTCGAATTATTGTTATTCTGTAATTTATAGTACCTGTCTAGTTATATATTTCACATTGGTTGTTTAATTCACGTGTTTCAGTACTAATTTTATCGTAAGAATAAGGTAGTGTAGCTTAGAGGATAGAGGTTATGCAGTTCCGAAAGTGTTTTAAAATCACTCTGTTGCATTTATGGCACTGCTTCATTGTTGTTATGAAGTTCATTGATTCTTTTGTGAACTTCACCAATAAATTGAGCCAATACCGTAGTTGCTTTCTCCTTTCCCTCCTGTCCAATCCTAGGAAAAGAAAATAAGAGTGGCCAAAATGCTGCGACTGTCTAACAATCTTCTGTTCTTCTTTATGCTCAAACCATTTTTGAGGAGATAAAATACGCACACATGCACACATGCATCCGTCGTATCCATATTAAGTATTGATTATGAGATTGAACCAGCGTTTATTTATATAATTCAAATTTGATCCTTGGGATTGTGATGCATTGTGTGCTTTGATCAATTTTCAGGTTATGCCTGAGAACTATGCTTTTGGGA</genome_strand>
        <mrna_strand>CGGACGATGGAATGGGCGGCGAGAGCAAACCACCT-GGTGGTCTACCGCGGAAAGTGGTGATCACGGCGGTAGGTACTTTTGCTAAGGTGGTGGCCAATCTACTGAACACCACCACCGTGCACAACGGCGACACCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC...................................................................................................................................................................................................................................................................................................GTTGGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGTTGGGTACTGGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGTATACCAATAACAAGAGGGGGCGGAATATATCAAGAACATATGAATGAAGCTCTTGATCGTTTGACTAACGGAGCCTGG.........................................................................................................................................................................................................................................................................................................................GCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAAATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCACCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCCTGAGAACTATGCTTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309930" ref_strand="+" ref_description="SGN-E309930 [cLEZ-10-O20]">
      <seq>tcggaaagtggtgatcacggcgataggtactttcgctaaggcggtggccaatctattgaacaccaccaccgtgcacaacggcgacgtccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatgtccactttagatgacccagttatgtgggcattcaaaggttttccaatttgtgatgcaaagctggctcgatgggtactggcagcggaagacatatgctttaaaaatacagtattgtcatactttttccggatcgggaaatgtataccaataacaagagggggtggaatatatcaagaacatatgaacgaagctcttgatcgtttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74269" stop="76688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74569" g_stop="74724" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75143" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="284" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75144" i_stop="76314" i_length="1171">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76315" g_stop="76388" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="358" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E309930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74569" e_stop="74724"/>
          <exon e_start="75016" e_stop="75143"/>
          <exon e_start="76315" e_stop="76388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACT</genome_strand>
        <mrna_strand>TCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC...................................................................................................................................................................................................................................................................................................TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582212" ref_strand="+" ref_description="SGN-E582212 [7845]">
      <seq>tactttcgctaaggtggtggccaatctactgaacatcaccaccgtgcacaacggcgacacccttatccggctagttcgatcccgcccagccggcgttcctctcctcaccgtcagcaatcacatggtccacgttggatgacccagttatgtgagcattcaaaggttttccaattcgtgatgcaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74296" stop="75372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74596" g_stop="74724" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75016" g_stop="75072" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="187" r_length="57" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E582212" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74596" e_stop="74724"/>
          <exon e_start="75016" e_stop="75072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATG-TCCACGTAAGTCACTTTATCTCTTCATTACGAGCTTCCTGTGACAGAAAAAACTTGTTAGTAGAAATTTGGTGAAATTGTTTATTGGGTAAACTAGCTATTATTGAATTTAATGCTTAACGGACGAAGAATTACAGAAATATTTTGCTGATATTTGGTATGCGTATAGAGGATTCATATAAAAATTCCATTTTGGGGTTGAAGCATAGTTGATTTAATCATTGATAGAGTGAGTTTCTCGAATACTTTGATTGTTGTAGTCATGTCTCTTATTTCCTATTGTGTTTCTAACTGCAGTTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCT</genome_strand>
        <mrna_strand>TACTTTCGCTAAGGTGGTGGCCAATCTACTGAACATCACCACCGTGCACAACGGCGACACCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGGTCCAC...................................................................................................................................................................................................................................................................................................GTTGGATGACCCAGTTATGTGAGCATTCAAAGGTTTTCCAATTCGTGATGCAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541818" ref_strand="+" ref_description="SGN-E541818 [TUS-62-M23](-)">
      <seq>tttccaatttgtgatgcaaagctggctcgatgggtactggcagcggaagacatatgctttaaaaatacagtattgtcatactttttccggatcggtgtgtaatctgttggtctgggaaatgtataccaataacaagagggggtggaatatatcaagaacatatgaacgaagctcttgatcgtttgactgaaggagcctggctgcatacatttccagaagggaaggtctgtcaagaagatgctcctataagacgattgaagtggggaactgccagtctcattgctcgtgcccccgtgactccaattgtcttgccaattatccatcatggttttgaaaaggttatgcctgagaactatgcttttgggagaagacctccagtccctttatggaaccaggagataaaaatagttgttggtgagccaatggaattcaaccttcctgaactgcgagagatggctctatctcagtctcgggattcatcatcttccagtgggcagtggccaagaaacatcctcgggggattgaacgaagcagcacaaaaatgtctgtacatgactatatctgatcaaatccgaactaccttggaaaacttaaggaattttagtaaatcttatgccaaggcagagcaataaagtaggcaatttccaagcattcaaagataaattcataagttgcatctgttttgaaggtcttgtaacttttcatttcaagattttgttagtttgagggtagacttctcatccccttaattgaggacacnggggtaatattttccccagtatcatccttgtagctgcatttttttgcattttgaaatgaaagatttcacatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74750" stop="78268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75050" g_stop="75163" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75164" i_stop="76314" i_length="1151">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="200" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76715" g_stop="76852" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="338" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77475" g_stop="77978" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="844" r_length="506" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E541818" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75050" e_stop="75163"/>
          <exon e_start="76315" e_stop="76400"/>
          <exon e_start="76715" e_stop="76852"/>
          <exon e_start="77475" e_stop="77978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGGGTAATTCGCCTTTTACCCTTGTATTCTTTCATCTAGTAATGGATGTTAATGTGAATTTTTTTATGCTTAGTCAATTGATCTTTTAGTACGCTCTAGGTGTTATTTTGTTACACTAAAATGGATATGCATATGATATGATATTATGTTATTCTGGAATTGAGGATTGAATTTGAAATGATCCAGTGTCACTTAACATAACCTCCATTTCATCCAGAAGTCATGAGAATGATGTATAATTTTGTCAACATTTCCTATTAAGTTTCCGCTAAATTGAAATGACATGTTTGGCTAAAGACCAACTTCCAAATGGGCAGCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAGGTAGGTTCTTGAAATGATAGCTGTCCACACACAGAAACGAACAATGGGGCTAATGCCTAAATAGCAAGGGACAATGGATTCATTTGGTTTCGGTTGTGTAGGCAGGCCTTAGGATGTTCGAATTATTGTTATTCTGTAATTTATAGTACCTGTCTAGTTATATATTTCACATTGGTTGTTTAATTCACGTGTTTCAGTACTAATTTTATCGTAAGAATAAGGTAGTGTAGCTTAGAGGATAGAGGTTATGCAGTTCCGAAAGTGTTTTAAAATCACTCTGTTGCATTTATGGCACTGCTTCATTGTTGTTATGAAGTTCATTGATTCTTTTGTGAACTTCACCAATAAATTGAGCCAATACCGTAGTTGCTTTCTCCTTTCCCTCCTGTCCAATCCTAGGAAAAGAAAATAAGAGTGGCCAAAATGCTGCGACTGTCTAACAATCTTCTGTTCTTCTTTATGCTCAAACCATTTTTGAGGAGATAAAATACGCACACATGCACACATGCATCCGTCGTATCCATATTAAGTATTGATTATGAGATTGAACCAGCGTTTATTTATATAATTCAAATTTGATCCTTGGGATTGTGATGCATTGTGTGCTTTGATCAATTTTCAGGTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCTTGGAAAACTTAAGGAATTTTAGTAAATCTTATGCCAAGGCAGAGCAATAAAGTAGGCAATTTCCAAGCATTCAAAGATAAATTCATAAGTTGCATCTGTTTTGAAGGTCTTGTAACTTTTCATTTCAAGATTTTGTTAGTTTGAGGGTAGACTTCTCATCCCCTTAATTGAGGACAC-GGGGTAATATTTT-CCCAGTATCATCCTTGTAGCTGCATTTTTTTGCATTTTGAAATGAAAGATTTCACATCAATTCTTGAAAA</genome_strand>
        <mrna_strand>TTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG..........................................................................................................................................................................................................................................................................................................................CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCTTGGAAAACTTAAGGAATTTTAGTAAATCTTATGCCAAGGCAGAGCAATAAAGTAGGCAATTTCCAAGCATTCAAAGATAAATTCATAAGTTGCATCTGTTTTGAAGGTCTTGTAACTTTTCATTTCAAGATTTTGTTAGTTTGAGGGTAGACTTCTCATCCCCTTAATTGAGGACACNGGGGTAATATTTTCCCCAGTATCATCCTTGTAGCTGCATTTTTTTGCATTTTGAAATGAAAGATTTCACATCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695124" ref_strand="+" ref_description="SGN-E695124 [LH_Ea05L10](-)">
      <seq>cagcggaagacatatgctttaaaaacacagtattgtcatactttttccggatcggtgtgtaatctgttggtctgggaaatgtataccaataacaagagggggtggaatatatcaagaacatatgaacgaagctcttgatcgtttgactgaaggagcctggctgcatacatttccagaagggaaggtctgtcaagaagatgctcctataagacgattgaagtggggaactgccagtctcgttgctcgtgcccccgtgactccaattgtcttgccaattatccatcatggttttgaaaaggttatgcctgagaactatgcttttgggagaagacctccagtccctttatggaaccaggagataaaaatagttgttggtgagccaatggaattcaaccttcctgaactgcgagagatggctctatctcaatctcgggattcatcatcttccagtgggcagtggccaagaaacatcctcgggggattgaacgaagcagcacaaaaatgtctgtacatgactatatttgatcaaatccgaactaccttggaaaacttgaggaattttagtaaatcctatgccaaggcagagcaataaagtaggcaatttccaagcattcaaagataattcataagttgcacctgttttgaaggtcttgtaaacttttcatttcaaaattttgatagtttgagggtggacttctcatcccttaattgaggacacagggtaataagttcccagtatcatccttgtagctgcattttttaccttaatggaatgaaagatttcacatcaattctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="74790" stop="78278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75090" g_stop="75163" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75164" i_stop="76314" i_length="1151">
            <donor d_prob="0.495" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76315" g_stop="76400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="160" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76715" g_stop="76852" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="298" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77475" g_stop="77978" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="800" r_length="502" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="815"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E695124" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75090" e_stop="75163"/>
          <exon e_start="76315" e_stop="76400"/>
          <exon e_start="76715" e_stop="76852"/>
          <exon e_start="77475" e_stop="77978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTGGTACACTTCTGTTCTTGTATTTTCATGCCCTATCTTTTGGTGTTTTTATTACTTGTACGAACTTTATATCACAGTGGGATATATGGTAGACCATTCCTCAGTGTGTTTGGTGGGTGAATTGGAAGGAGAGGAACCAAAGATGTTTGAAAGTGGACATGTATTTTCATCGCAGATGCATTCCCTATGAGAATATTTACACTATGAAATATATATTTATTTCCCTTTTGGGATTTTGGTGTAGGCTAGAAGATGTCAAATACAGTTAATAGGATGATAGGTTTTCTCAGCTTCTTACAGTAATCGTAAAGGAACTGATCCGTATGTAATTTTTGGCATAATCCTAGTGCGTCATTTTACAACCTTACTATTCCTCAAAAATGAACTCCATATCATAGTAGGGTTCAAAAGTGAAAAGCAAAATGCAAGTTATGCTTTGTCAGTGGACATGCATTTTTGAAGCAGAATATTAGGTTCCCTTAGGAAGGACAGAGCATGTTCTTGCATAGATATTCTATCAAGAACTTTGAGAATATTTGGAGATCATTTACTTTTTAATGGTTCAGTAGTGAAGGGGCTTTTGGGTGTAGGAATGATGCAATAAATGTCTTTGGAATCAGCTGCATAATCGTGATAAAAATGTGTAACTACCTATGCTTATATAAACTGAAGTAGTGCCTCAAAACTCAAGGTGATATCTTGGTGGAATAGGACTTAGGTTTAGCTTGAAATTTCCATGTTAGCACTTACTCGAATCTGCATGCGCACCTGTGGTTTCTGTACCATTCACATGGATATTAAGCTTTTCATGCTGAGCGGTTATTCAGATTATCCATCCTCTTGTAGAGCAAGCTTCCATATCGAGCAATTATTCATTTCTGCACCTATACTTCTGTTCAACATGCTTCCGTATTGACCATTCAGATCTGGATCTGTCACTGTGTGGTTTATTCTCCACTGACATGTATAACAGTCAATTTTATATTTTCTTATTTATTTCCCTTGCCAAAACGTGAAACAGAGGACTCTTAATTTGATGTGCATTAGGGGATTTGAGGTTCTGGGTTTCATTTGCAGGCCTACATGAATTCCTCAATTTAATACAGAATGTAATTGTTGGTGGGGGTTACTACTCACTTTGTGAAGATGTGCAGGGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGGGTAATTCGCCTTTTACCCTTGTATTCTTTCATCTAGTAATGGATGTTAATGTGAATTTTTTTATGCTTAGTCAATTGATCTTTTAGTACGCTCTAGGTGTTATTTTGTTACACTAAAATGGATATGCATATGATATGATATTATGTTATTCTGGAATTGAGGATTGAATTTGAAATGATCCAGTGTCACTTAACATAACCTCCATTTCATCCAGAAGTCATGAGAATGATGTATAATTTTGTCAACATTTCCTATTAAGTTTCCGCTAAATTGAAATGACATGTTTGGCTAAAGACCAACTTCCAAATGGGCAGCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAGGTAGGTTCTTGAAATGATAGCTGTCCACACACAGAAACGAACAATGGGGCTAATGCCTAAATAGCAAGGGACAATGGATTCATTTGGTTTCGGTTGTGTAGGCAGGCCTTAGGATGTTCGAATTATTGTTATTCTGTAATTTATAGTACCTGTCTAGTTATATATTTCACATTGGTTGTTTAATTCACGTGTTTCAGTACTAATTTTATCGTAAGAATAAGGTAGTGTAGCTTAGAGGATAGAGGTTATGCAGTTCCGAAAGTGTTTTAAAATCACTCTGTTGCATTTATGGCACTGCTTCATTGTTGTTATGAAGTTCATTGATTCTTTTGTGAACTTCACCAATAAATTGAGCCAATACCGTAGTTGCTTTCTCCTTTCCCTCCTGTCCAATCCTAGGAAAAGAAAATAAGAGTGGCCAAAATGCTGCGACTGTCTAACAATCTTCTGTTCTTCTTTATGCTCAAACCATTTTTGAGGAGATAAAATACGCACACATGCACACATGCATCCGTCGTATCCATATTAAGTATTGATTATGAGATTGAACCAGCGTTTATTTATATAATTCAAATTTGATCCTTGGGATTGTGATGCATTGTGTGCTTTGATCAATTTTCAGGTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCTTGGAAAACTTAAGGAATTTTAGTAAATCTTATGCCAAGGCAGAGCAATAAAGTAGGCAATTTCCAAGCATTCAAAGATAAATTCATAAGTTGCATCTGTTTTGAAGGTCTTGT-AACTTTTCATTTCAAGATTTTGTTAGTTTGAGGGTAGACTTCTCATCCCCTTAATTGAGGACACGGGGTAATATTTTCCCAGTATCATCCTTGTAGCTGCATTTTTTTGCATTTTGAAATGAAAGATTTCACATCAATTCTTGAAAA</genome_strand>
        <mrna_strand>CAGCGGAAGACATATGCTTTAAAAACACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG..........................................................................................................................................................................................................................................................................................................................CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCGTTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAATCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATTTGATCAAATCCGAACTACCTTGGAAAACTTGAGGAATTTTAGTAAATCCTATGCCAAGGCAGAGCAATAAAGTAGGCAATTTCCAAGCATTCAAAGAT-AATTCATAAGTTGCACCTGTTTTGAAGGTCTTGTAAACTTTTCATTTCAAAATTTTGATAGTTTGAGGGTGGACTTCTCAT-CCCTTAATTGAGGACACAGGGTAATAAGTTCCCAGTATCATCCTTGTAGCTGCATTTTTTACCTTAATGGAATGAAAGATTTCACATCAATTC-TGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234356" ref_strand="+" ref_description="SGN-E234356 [cLEL-8-F11](-)">
      <seq>ttaaggagttttagttaatcttatgccaaggcagagcaataaagtagtctatttcctagcattcaaagataaattcataagttgcatctgttttgaaggtcttgtaacttttcatttcaagattttgttagtttgagggtagacttctcatccccttaattgaggacacggggtaatattttcccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="77427" stop="78212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77727" g_stop="77912" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="187" polyA_stop="205"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E234356" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77727" e_stop="77912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGAATTTTAGTAAATCTTATGCCAAGGCAGAGCAATAAAGTAGGCAATTTCCAAGCATTCAAAGATAAATTCATAAGTTGCATCTGTTTTGAAGGTCTTGTAACTTTTCATTTCAAGATTTTGTTAGTTTGAGGGTAGACTTCTCATCCCCTTAATTGAGGACACGGGGTAATATTTTCCCA</genome_strand>
        <mrna_strand>TTAAGGAGTTTTAGTTAATCTTATGCCAAGGCAGAGCAATAAAGTAGTCTATTTCCTAGCATTCAAAGATAAATTCATAAGTTGCATCTGTTTTGAAGGTCTTGTAACTTTTCATTTCAAGATTTTGTTAGTTTGAGGGTAGACTTCTCATCCCCTTAATTGAGGACACGGGGTAATATTTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456447" ref_strand="+" ref_description="SGN-E456447 [cSTS-29-F15]">
      <seq>ccgctatttccttctccagttcccagccctgaaaatagtagaagaaactgtgtcatagctttcactactccacaaaactacgcaccaagattatctgagctcatacacctcaaaggatggacacccctttggtgtcctaccgtcattgttgaatctacggaacaaacaatctcttccattcatcactacctcaacccacaagctggtatcgatgaacccaattcgtttcttgaagaattttcagctctagcattcacttcaagaactgggattacagctttttcacaagctttatctattaaccccacacccccattaaccccaaatggagaaactctcacaattgcagctttgggtaatgatgctgagcttctggatcgagaattcattcgaaaaatgtgtgaaaaccctgaaagaattcgagttttggttccttcaattgcaaccccatctgggttagtggaggcattaggattgggtcaaggaagaaaagtgttgtgcccagttcctttagtgattgggttgaatgaaccacctgttgtgccgaaattccttgaggatttatcgaaaagggggtggattccagtgagattagacgcgtatgagacgcgatgggcangggcgaaatgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="78043" stop="79274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78343" g_stop="78975" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E456447" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78343" e_stop="78975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTATTCCCTTTTCCAGTTCCCAGCCCTGAAAACAGTAGAAGAAACTGTGTCATCGCTTTTACCACTCCCCAAAACTACGCACCAAGATTATCTGAACTCATACATCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCGTTCACTTCAAGAACTGGGATTACTGCTTTTTCACAAGCTTTATCTATGAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCCCAGTTCCATTAGTGATTGGGTTGAATGAACCACCTGTTGTGCCGAAATTCCTTGATGATTTATCGAAAAGGGGGTGGATTCCATTGAGATTAGACGCGTATGAGACGCGATGGGCAGGGGCGACATGCGCT</genome_strand>
        <mrna_strand>CCGCTATTTCCTTCTCCAGTTCCCAGCCCTGAAAATAGTAGAAGAAACTGTGTCATAGCTTTCACTACTCCACAAAACTACGCACCAAGATTATCTGAGCTCATACACCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCATTCACTTCAAGAACTGGGATTACAGCTTTTTCACAAGCTTTATCTATTAACCCCACACCCCCATTAACCCCAAATGGAGAAACTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGAATTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAATTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTGGGTCAAGGAAGAAAAGTGTTGTGCCCAGTTCCTTTAGTGATTGGGTTGAATGAACCACCTGTTGTGCCGAAATTCCTTGAGGATTTATCGAAAAGGGGGTGGATTCCAGTGAGATTAGACGCGTATGAGACGCGATGGGCANGGGCGAAATGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426261" ref_strand="+" ref_description="SGN-E426261 [STM-46-E4]">
      <seq>ccgctatttccttctccagttcccagccctgaaaatagtagaagaaactgtgtcatagctttcactactccacaaaactacgcaccaagattatctgagctcatacacctcaaaggatggacacccctttggtgtcctaccgtcattgttgaatctacggaacaaacaatctcttccattcatcactacctcaacccacaagctggtatcgatgaacccaattcgtttcttgaagaattttcagctctagcattcacttcaagaactgggattacagctttttcacaagctttatctattaaccccacacccccattaaccccaaatggagaaactctcacaattgcagctttgggtaatgatgctgagcttctggatcgagaattcattcgaaaaatgtgtgaaaaccctgaaagaattcgagttttggtttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="78043" stop="79076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78343" g_stop="78777" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E426261" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78343" e_stop="78777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTATTCCCTTTTCCAGTTCCCAGCCCTGAAAACAGTAGAAGAAACTGTGTCATCGCTTTTACCACTCCCCAAAACTACGCACCAAGATTATCTGAACTCATACATCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCGTTCACTTCAAGAACTGGGATTACTGCTTTTTCACAAGCTTTATCTATGAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCT</genome_strand>
        <mrna_strand>CCGCTATTTCCTTCTCCAGTTCCCAGCCCTGAAAATAGTAGAAGAAACTGTGTCATAGCTTTCACTACTCCACAAAACTACGCACCAAGATTATCTGAGCTCATACACCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCATTCACTTCAAGAACTGGGATTACAGCTTTTTCACAAGCTTTATCTATTAACCCCACACCCCCATTAACCCCAAATGGAGAAACTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGAATTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540532" ref_strand="+" ref_description="SGN-E540532 [TUS-60-N17]">
      <seq>cagttcccagccctgaaaacagtagaagaaactgtgtcatcgcttttaccactccccaaaactacgcaccaagattatctgaactcatacatctcaaaggatggacacccctttggtgtcctaccgtcattgttgaatctacggaacaaacaatctcttccattcatcactacctcaacccacaagctggtatcgatgaacccaattcgtttcttgaagaattttcagctctagcgttcacttcaagaactgggattactgctttttcacaagctttatctatgaaccccacacccccattaaccccaaatggagaaattctcacaattgcagctttgggtaatgatgctgagcttctggatcgagatttcattcgaaaaatgtgtgaaaaccctgaaagaattcgagttttggttccttcagttgcaaccccatctgggttagtggaggcattaggattaggtcaaggaagaaaagtgttatgcccagttccattagtgattgggttgaatgaaccacctgttgtgccgaaattccttgatgatttatcgaaaagggggtggattccattgagattagacgcgtatgagacgcgatgggcaggggcgacatgcgctgtggatgtggtggcaaagagtgaagaagagtgtggatttgatgcaattgtgtttactagtactggagaagtggaagtttgttgaagagtttggaggaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="78059" stop="79378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78359" g_stop="79078" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E540532" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78359" e_stop="79078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCCCAGCCCTGAAAACAGTAGAAGAAACTGTGTCATCGCTTTTACCACTCCCCAAAACTACGCACCAAGATTATCTGAACTCATACATCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCGTTCACTTCAAGAACTGGGATTACTGCTTTTTCACAAGCTTTATCTATGAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCCCAGTTCCATTAGTGATTGGGTTGAATGAACCACCTGTTGTGCCGAAATTCCTTGATGATTTATCGAAAAGGGGGTGGATTCCATTGAGATTAGACGCGTATGAGACGCGATGGGCAGGGGCGACATGCGCTGTGGATGTGGTGGCAAAGAGTGAAGAAGAGTGTGGATTTGATGCAATTGTGTTTACTAGTACTGGAGAAGTGGAAGGTTTGTTGAAGAGTTTGGAGGAATTTG</genome_strand>
        <mrna_strand>CAGTTCCCAGCCCTGAAAACAGTAGAAGAAACTGTGTCATCGCTTTTACCACTCCCCAAAACTACGCACCAAGATTATCTGAACTCATACATCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCGTTCACTTCAAGAACTGGGATTACTGCTTTTTCACAAGCTTTATCTATGAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCCCAGTTCCATTAGTGATTGGGTTGAATGAACCACCTGTTGTGCCGAAATTCCTTGATGATTTATCGAAAAGGGGGTGGATTCCATTGAGATTAGACGCGTATGAGACGCGATGGGCAGGGGCGACATGCGCTGTGGATGTGGTGGCAAAGAGTGAAGAAGAGTGTGGATTTGATGCAATTGTGTTTACTAGTACTGGAGAAGTGGAA-GTTTGTTGAAGAGTTTGGAGGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287920" ref_strand="+" ref_description="SGN-E287920 [cLES-19-P5]">
      <seq>agttcccagccctgaaaacagtagaagaaactgtgtcatcgcttttaccactccccaaaactacgcaccaagattatctgaactcatacatctcaaaggatggacacccctttggtgtcctaccgtcattgttgaatctacggaacaaacaatctcttccattcatcactacctcaacccacaagctggtatcgatgaacccaattcgtttcttgaagaattttcagctctagcgttcacttcaagaactgggattactgctttttcacaagctttatctatgaaccccacacccccattaaccccaaatggagaaattctcacaattgcagctttgggtaatgatgctgagcttctggatcgagatttcattcgaaaaatgtgtgaaaaccctgaaagaattcgagttttggttccttcagttgcaaccccatctgggttagtggaggcattaggattaggtcaaggaagaaaagtgttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="78060" stop="79144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78360" g_stop="78844" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E287920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78360" e_stop="78844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCCAGCCCTGAAAACAGTAGAAGAAACTGTGTCATCGCTTTTACCACTCCCCAAAACTACGCACCAAGATTATCTGAACTCATACATCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCGTTCACTTCAAGAACTGGGATTACTGCTTTTTCACAAGCTTTATCTATGAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCC</genome_strand>
        <mrna_strand>AGTTCCCAGCCCTGAAAACAGTAGAAGAAACTGTGTCATCGCTTTTACCACTCCCCAAAACTACGCACCAAGATTATCTGAACTCATACATCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCGTTCACTTCAAGAACTGGGATTACTGCTTTTTCACAAGCTTTATCTATGAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699811" ref_strand="+" ref_description="SGN-E699811 [FA11BB05]">
      <seq>caaaaagacatgctgtgaactagacaattatagaagttttggctataaatagcaaattgtagctccaatcaaaactttgaatgatgagcaaaaaccaaatttcaagattcttgattttgcaatgatttccatttatgagctaatgcatcaaccacaccatcaaagctaccaaaatttgaacttaccacatcaatgccaacacccaaactctcagcaccagcagctgtaacagggccatgagctgccaccaccattcttggacatctcctcctcaccattgaccaatccaatccaaattcctccaaactcttcaacaaaccttccacttctccagtactagtaaacacaattgcatcaaatccacactcttcttcactctttgccaccacatccacagcgcatgtcgcccctgcccatcgcgtctcatacgcgtctaatctcaatggaatccacccccttttcgataaatcatcaaggaatttcggcacaacaggtggttcattcaacccaatcactaatggaactgggcataacacttttcttccttgacctaatcctaatgcctccactaacccagatggggttgcaactgaaggaaccaaaactcgaattctttcagggttttcacacatttttcgaatgaaatctcgatccagaagctcagcatcattacccaaagctgcaattgtgagaatttctccatttggggttaatgggggtgtggggttcatagataaagcttgtgaaaaagcagtaatcccagttcttgaagtgaacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="79670" stop="78291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79370" g_stop="78591" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E699811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79370" e_stop="78591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGACATGCTGTGAACTAGACAATTATAGAAGTTTTGGCTATAAATAGCAAATTGTAGCTCCAATCAAAACTTTGAATGATGAGCAAAAACCAAATTTCAAGATTCTTGATTTTGCAATGATTTCCATTTATGAGCTAATGCATCAACCACACCATCAAAGCTACCAAAATTTGAACTTACCACATCAATGCCAACACCCAAACTCTCAGCACCAGCAGCTGTAACAGGGCCATGAGCTGCCACCACCATTCTTGGACATCTCCTCCTCACCATTGACCAATCCAATCCAAATTCCTCCAAACTCTTCAACAAACCTTCCACTTCTCCAGTACTAGTAAACACAATTGCATCAAATCCACACTCTTCTTCACTCTTTGCCACCACATCCACAGCGCATGTCGCCCCTGCCCATCGCGTCTCATACGCGTCTAATCTCAATGGAATCCACCCCCTTTTCGATAAATCATCAAGGAATTTCGGCACAACAGGTGGTTCATTCAACCCAATCACTAATGGAACTGGGCATAACACTTTTCTTCCTTGACCTAATCCTAATGCCTCCACTAACCCAGATGGGGTTGCAACTGAAGGAACCAAAACTCGAATTCTTTCAGGGTTTTCACACATTTTTCGAATGAAATCTCGATCCAGAAGCTCAGCATCATTACCCAAAGCTGCAATTGTGAGAATTTCTCCATTTGGGGTTAATGGGGGTGTGGGGTTCATAGATAAAGCTTGTGAAAAAGCAGTAATCCCAGTTCTTGAAGTGAACGCT</genome_strand>
        <mrna_strand>CAAAAAGACATGCTGTGAACTAGACAATTATAGAAGTTTTGGCTATAAATAGCAAATTGTAGCTCCAATCAAAACTTTGAATGATGAGCAAAAACCAAATTTCAAGATTCTTGATTTTGCAATGATTTCCATTTATGAGCTAATGCATCAACCACACCATCAAAGCTACCAAAATTTGAACTTACCACATCAATGCCAACACCCAAACTCTCAGCACCAGCAGCTGTAACAGGGCCATGAGCTGCCACCACCATTCTTGGACATCTCCTCCTCACCATTGACCAATCCAATCCAAATTCCTCCAAACTCTTCAACAAACCTTCCACTTCTCCAGTACTAGTAAACACAATTGCATCAAATCCACACTCTTCTTCACTCTTTGCCACCACATCCACAGCGCATGTCGCCCCTGCCCATCGCGTCTCATACGCGTCTAATCTCAATGGAATCCACCCCCTTTTCGATAAATCATCAAGGAATTTCGGCACAACAGGTGGTTCATTCAACCCAATCACTAATGGAACTGGGCATAACACTTTTCTTCCTTGACCTAATCCTAATGCCTCCACTAACCCAGATGGGGTTGCAACTGAAGGAACCAAAACTCGAATTCTTTCAGGGTTTTCACACATTTTTCGAATGAAATCTCGATCCAGAAGCTCAGCATCATTACCCAAAGCTGCAATTGTGAGAATTTCTCCATTTGGGGTTAATGGGGGTGTGGGGTTCATAGATAAAGCTTGTGAAAAAGCAGTAATCCCAGTTCTTGAAGTGAACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540530" ref_strand="+" ref_description="SGN-E540530 [TUS-60-N17](-)">
      <seq>aattgcagctttgggtaatgatgctgagcttctggatcgagatttcattcgaaaaatgtgtgaaaaccctgaaagaattcgagttttggttccttcagttgcaaccccatctgggttagtggaggcattaggattaggtcaaggaagaaaagtgttatgcccagttccattagtgattgggttgaatgaaccacctgttgtgccgaaattccttgatgatttatcgaaaagggggtggattccattgagattagacgcgtatgagacgcgatgggcaggggcgacatgcgctgtggatgtggtggcaaagagtgaagaagagtgtggatttgatgcaattgtgtttactagtactggagaagtggaaggtttgttgaagagtttggaggaatttggattggattggtcaatggtgaggaggagatgtccaagaatggtggtggcagctcatggccctgttacagctgctggtgctgagagtttgggtgttggcattgatgtggtaagttcaaattttggtagctttgatggtgtggttgatgcattagctcataaatggaaatcattgcaaaatcaagaatcttgaaatttggtttttgctcatcattcaaagttttgattggagctacaatttgctatttatagccaaaacttctataattgtctagttcacagcatgtctttttgttttgtactaatttggaaaagttttagtaatttttgatgttgtgagttacaaagttttgatgtttatatggatgcaacatttctcataaatgcaatcaatggaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="78384" stop="79781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78684" g_stop="79476" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="793" polyA_stop="822"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E540530" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78684" e_stop="79476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCCCAGTTCCATTAGTGATTGGGTTGAATGAACCACCTGTTGTGCCGAAATTCCTTGATGATTTATCGAAAAGGGGGTGGATTCCATTGAGATTAGACGCGTATGAGACGCGATGGGCAGGGGCGACATGCGCTGTGGATGTGGTGGCAAAGAGTGAAGAAGAGTGTGGATTTGATGCAATTGTGTTTACTAGTACTGGAGAAGTGGAAGGTTTGTTGAAGAGTTTGGAGGAATTTGGATTGGATTGGTCAATGGTGAGGAGGAGATGTCCAAGAATGGTGGTGGCAGCTCATGGCCCTGTTACAGCTGCTGGTGCTGAGAGTTTGGGTGTTGGCATTGATGTGGTAAGTTCAAATTTTGGTAGCTTTGATGGTGTGGTTGATGCATTAGCTCATAAATGGAAATCATTGCAAAATCAAGAATCTTGAAATTTGGTTTTTGCTCATCATTCAAAGTTTTGATTGGAGCTACAATTTGCTATTTATAGCCAAAACTTCTATAATTGTCTAGTTCACAGCATGTCTTTTTGTTTTGTACTAATTTGGAAAAGTTTTAGTAATTTTTGATGTTGTGAGTTACAAAGTTTTGATGTTTATATGGATGCAACATTTCTCATAAATGCAATCAATTGGAAA</genome_strand>
        <mrna_strand>AATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCCCAGTTCCATTAGTGATTGGGTTGAATGAACCACCTGTTGTGCCGAAATTCCTTGATGATTTATCGAAAAGGGGGTGGATTCCATTGAGATTAGACGCGTATGAGACGCGATGGGCAGGGGCGACATGCGCTGTGGATGTGGTGGCAAAGAGTGAAGAAGAGTGTGGATTTGATGCAATTGTGTTTACTAGTACTGGAGAAGTGGAAGGTTTGTTGAAGAGTTTGGAGGAATTTGGATTGGATTGGTCAATGGTGAGGAGGAGATGTCCAAGAATGGTGGTGGCAGCTCATGGCCCTGTTACAGCTGCTGGTGCTGAGAGTTTGGGTGTTGGCATTGATGTGGTAAGTTCAAATTTTGGTAGCTTTGATGGTGTGGTTGATGCATTAGCTCATAAATGGAAATCATTGCAAAATCAAGAATCTTGAAATTTGGTTTTTGCTCATCATTCAAAGTTTTGATTGGAGCTACAATTTGCTATTTATAGCCAAAACTTCTATAATTGTCTAGTTCACAGCATGTCTTTTTGTTTTGTACTAATTTGGAAAAGTTTTAGTAATTTTTGATGTTGTGAGTTACAAAGTTTTGATGTTTATATGGATGCAACATTTCTCATAAATGCAATCAA-TGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335196" ref_strand="+" ref_description="SGN-E335196 [cTOE-1-L10]">
      <seq>ttaacatctctttctctctctggtaccgatctttcttctaagtaaagctccattttcagcagaaattcaaaatgggtttcatcatatcctcttcgtattctcatatattctgagatttcctatttctaatttctgagcttatgaacaccatttttgcttagctacacgaagccccaaaacaagagaacacaaacccagaggtttttaggcgttttattatgagttacacctcataccatgctgttttgttaaatggggttttgcgttttttctgttttgttactgtggtttctcgatctactgcactgggttacgacttattgtcttttttaccaatgtgaactaccaagttcgaatttttaaagtattttatactgttctgtgcttgtgggtacatggatcttggtgggtaatttctttggtgcttgattagtagaaaacattgctggtaattagggagcttgctaagttatctgattttcatgagttttctgtgagctttgtagcatatcgtgcaatgttgatcgtatttttgtgattctgtttggatttttagtgttgattttggtttgggccttctgttgactatttgttgaaattggcttcttctttatgccggggttataatgttttggacttctttgatttttagtatcatggtgttactaaattggttaggtaactgctgaagttattgaagattaccgtttaattgaggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="88130" stop="89454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88430" g_stop="89154" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E335196" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88430" e_stop="89154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATCTCTTTCTCTCTCTGGTACCGATCTTTCTTCTAAGTAAAGCTCCATTTTCAGCAGAAATTCAAAATGGGTTTCATCATATCCTCTTCGTATTCTCATATATTCTGAGATTTCCTATTTCTAATTTCTGAGCTTATGAACACCATTTTTGCTTAGCTACACGAAGCCCCAAAACAAGAGAACACAAACCCAGAGGTTTTTAGGCGTTTTATTATGAGTTACACCTCATACCATGCTGTTTTGTTAAATGGGGTTTTGCGTTTTTTCTGTTTTGTTACTGTGGTTTCTCGATCTACTGCACTGGGTTACGACTTATTGTCTTTTTTACCAATGTGAACTACCAAGTTCGAATTTTTAAAGTATTTTATACTGTTCTGTGCTTGTGGGTACATGGATCTTGGTGGGTAATTTCTTTGGTGCTTGATTAGTAGAAAACATTGCTGGTAATTAGGGAGCTTGCTAAGTTATCTGATTTTCATGAGTTTTCTGTGAGCTTTGTAGCATATCGTGCAATGTTGATCGTATTTTTGTGATTCTGTTTGGATTTTTAGTGTTGATTTTGGTTTGGGACTTCTGTTGACTATTTGTTGAAATTGGCTTCTTCTTTAATGCGGGGGTTATATGTTTTTGGACTTCTTTGATTTTTAGTAATCATGGTGTTACTAAATTGGTTAGGTAACTGCTGAAGTTATTGAAGATTACCGTTTAATTGAGGAGTTG</genome_strand>
        <mrna_strand>TTAACATCTCTTTCTCTCTCTGGTACCGATCTTTCTTCTAAGTAAAGCTCCATTTTCAGCAGAAATTCAAAATGGGTTTCATCATATCCTCTTCGTATTCTCATATATTCTGAGATTTCCTATTTCTAATTTCTGAGCTTATGAACACCATTTTTGCTTAGCTACACGAAGCCCCAAAACAAGAGAACACAAACCCAGAGGTTTTTAGGCGTTTTATTATGAGTTACACCTCATACCATGCTGTTTTGTTAAATGGGGTTTTGCGTTTTTTCTGTTTTGTTACTGTGGTTTCTCGATCTACTGCACTGGGTTACGACTTATTGTCTTTTTTACCAATGTGAACTACCAAGTTCGAATTTTTAAAGTATTTTATACTGTTCTGTGCTTGTGGGTACATGGATCTTGGTGGGTAATTTCTTTGGTGCTTGATTAGTAGAAAACATTGCTGGTAATTAGGGAGCTTGCTAAGTTATCTGATTTTCATGAGTTTTCTGTGAGCTTTGTAGCATATCGTGCAATGTTGATCGTATTTTTGTGATTCTGTTTGGATTTTTAGTGTTGATTTTGGTTTGGGCCTTCTGTTGACTATTTGTTGAAATTGGCTTCTTCTTT-ATGCCGGGGTTATAATGTTTTGGACTTCTTTGATTTTTAGT-ATCATGGTGTTACTAAATTGGTTAGGTAACTGCTGAAGTTATTGAAGATTACCGTTTAATTGAGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624647" ref_strand="+" ref_description="SGN-E624647 [GI|1369851]">
      <seq>ctgagagctgtatagagtggagattataattttggaaaatgacttctgatatgccagcagttagtatgaggtcaagcaggtcatcttttggctcaagcaatggatatgaaacaccttctcactattcctttccaacctcaaatggggatgattatgatagtgatggttccaatttcgctccacccactccaaataccctatcatcagtcctgtcacccgaacttgctggtgcgataccatatattgacagattccaggttgagggttttttgaaggctatgcaaaaacagattcactctgctagcaaacgtgggttcttcctgaaaaaatctgttgggccccaagttcgagaaaagtttacatttgaggatatgctgtgtttccaaagggaacccattccaacatcaattttgaaactaaatggtgatctcattagcagggcagttaagttatttcagtctattctgaagtatatgggtattgattcctatgatagagtggctccaatcagcttggatgaacggattgagcttgttggcaagctatttaagcaggccctgaagcgatctgagcttcgggatgaaatgtttgcacaaatttcaaaacaaacaaggaataatccagagaggcattctttgattaaagcatgggagctaatgtacttgtgcgcatcttgcatgcctccaagcaaggaaattggtggatacttgtcagaatatattcatactgtagcacatgggactaatactgattccgaggttcaagtttttgctataaatactctaaatgcactgaaacgttcgattaaggctggacctaggcacacgatacctggtcgtgaggagattgaagctcatttaactggtaaaaagcttactacaatagtgtttttcttggatgaaactttcgaggaaattacatatgacatggcaaccactgttgctgatgctattgaggaggttgcagggataatcaaattgtctgctcatgttagcttcagtttgttcgagtgccgtaaggttgttactggatctaaatctccagaccttggaaatgaggagtatattggtttggatgaaaataagtatattggagatcttctggcggactttaaggcatcgaaagatagaagtaaaggagagattttgcattgtaaattgattttcaagaaaaagttgtttcgggagtcagatgaagctgttacagagccaatgttcgtgcaattatcgtatgttcaattacaacatgattacataatgggaaattatcctgttggcaaggaagatgctgcacagatgtctgctttgcagatcctggttgacattggatatgtggatggccctgaatcttgcactgactggacatcactgctggagcgatttttacccagacaaattgcaatgacacgggcaaagagggaatgggaattggacatcctttctcgttacaaagtgatggaaaatctgacaaaagatgatgccaaacaacaatttttgcggatcctgaggacacttccttatgggaattcagttttctttgctgttcggaagattgatgatccaattggacttttacctgggaaaattgtattgggcattaataagcgtggggttcattttttccgtccagttccaaaggaatatttgcattcagctgagcttagggacataatgcaatttggtagcagcaacactgctgtgttctttaagatgagagttgctggtgtcttgcatatatttcagtttgaaacgaaacagggagaagaaatttgtgttgctctgcaaacacatattaatgatgtgatgttacgccgttactctaaagcccgctcttcggctaatggttctgttaatggagatgttccaaataatctcaaaactgcaaacactgatattaatgaaagacgcattcaggatttgtctagagcccttgaagaatctcagaagaaagtcaatgatttggtggaagatttacatgaaaggcaaaaacaagaatcagagatgcaagaagaattggacggcttaaaagataacttgagttccgagaagcaaaatttagcagcggctgcttatgattgtgataaattcagatctttatgcgatgaaaaagatgcagagcttcaggctgccctaacggagaagcgaaacttggaaatgcgtctttcaaagttaagttctcaaggtttggagaaaaatattacgaaagagttggttgaagcaaataaccaggtcttacagaagatccaagaagagttgaaagctcgtactatggatttgcgtactgcagaagaaacaaagaggaggcttttgagtgaaaaagcatcacttgaggaaaaagtcataggactagagaagaagaaatcaaatgagatggaaaaccttcagaaagattttgaaaaagaatgcaaggggctaaggctccaagtctctgaacttcaaaggaaactagaagaggccaaacacgacttgattggtgcacagtctggtcttgaagctaaagacaaggaactagaaatgctacagaataatttaaaggagcttgaggagctgagagaaatgaaagaggatattgatcgaaaaaatgcacaaactgctgccatcttgaaaatgcaaggggctcaattggcagaaatggaagcactttaccgggaggaacaagttctgaggaaaaagtatttcaacataatagaagatatgaaaggcaagatcagagtctactgtagattaagaccactttgtgaaaaggaaattatagcaaaggaaagaaatgccatcagaagtgttgatgagtttaccgttgaacatttatggaaagatgataaagcaaaacagcacatgtatgaccgtgtctttgatggaaatgccacccaagatgatgtgttcgaagatactaagtatttggtgcaatcagctgttgatggatataatgtttgcatatttgcatatggacaaactggatctggcaagacattcacaatctatggagctgatagtaatccaggactgacaccaagagctatgtccgaactctttagaattatgaaaaaagacagtaataagttctctttctctttaaaggcgtacatggtagagttgtatcaggatacgttggtagatcttttattgccaaagcaagcaaagcgcttgaaattggatataaaaaaggattcaaagggcatggtttctgtggagaatgtgacagtggtgtctatttcaacgtacgaggagcttaagacaataatccaaagaggatctgaacagcgtcatacgactggaaccttgatgaatgagcagagttcaagatctcatcttattgtttcagttattatcgagagtaccaatcttcaaactcaggcaattgccagagggaagttgagttttgtggatcttgctggctcagaaagagttaaaaagtctggctcagctggcaatcaattaaaagaagctcaaagcattaacaagtccctgtcagcacttggtgatgttataagtgcattatcttcaggaaatcaacacattccttatcgaaatcacaagctaaccatgttgatgagcgactcgttaggtggaaatgctaaaaccctgatgtttgtaaacatctctccagcagaatcaaacttggatgagactcacaattccttgacgtatgcatcaagagttcgttctattgtaaatgatcccagcaaaaatgtttcctcaaaggaagtcgctcgtttaaagaagctagtttcatactggaaggaacaagctggtagaaaaggagatgatgaggaattggaggaaatccaagacgaacgaccaactaaagacaagactgatggtcgttattccatgtaaaacctctcgaattgaacacgtggaacgaaaatgaagttgagtatcttgtttagctgcctcaaaagtgtgatgagggaaatagtgaacaattgaacagcttgttcaagctggtactgaagtggttgagattttccttcccagaattttgttgtctgattgggaggcttaaagaatttagcttagagagtcctcaatcctcatgttgtatagagctatatgtgtatattatacttaaacaatcaatcaatcaatggttacttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="88866" stop="98326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89165" g_stop="89348" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89349" i_stop="89490" i_length="142">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89491" g_stop="89563" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="257" r_length="73" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89564" i_stop="89731" i_length="168">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89732" g_stop="89863" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="389" r_length="132" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89864" i_stop="89948" i_length="85">
            <donor d_prob="0.827" d_score="0.92"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89949" g_stop="90187" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="628" r_length="239" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90188" i_stop="90305" i_length="118">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90306" g_stop="90633" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="956" r_length="328" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90634" i_stop="91832" i_length="1199">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91833" g_stop="91932" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="957" r_stop="1056" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91933" i_stop="92008" i_length="76">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92009" g_stop="92190" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1057" r_stop="1238" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="92191" i_stop="92300" i_length="110">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92301" g_stop="92416" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1239" r_stop="1354" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92417" i_stop="92592" i_length="176">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92593" g_stop="92695" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1355" r_stop="1457" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92696" i_stop="93227" i_length="532">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="93228" g_stop="93380" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1458" r_stop="1610" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="93381" i_stop="93464" i_length="84">
            <donor d_prob="0.808" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="93465" g_stop="93611" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1611" r_stop="1757" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="93612" i_stop="93719" i_length="108">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="93720" g_stop="93920" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1758" r_stop="1958" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="93921" i_stop="94195" i_length="275">
            <donor d_prob="0.604" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="94196" g_stop="94360" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1959" r_stop="2123" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="94361" i_stop="94434" i_length="74">
            <donor d_prob="0.700" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="94435" g_stop="94539" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="2124" r_stop="2228" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="94540" i_stop="94641" i_length="102">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="94642" g_stop="94782" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="2229" r_stop="2369" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="94783" i_stop="94872" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="94873" g_stop="95067" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="2370" r_stop="2564" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="95068" i_stop="95365" i_length="298">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="95366" g_stop="95492" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="2565" r_stop="2691" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="95493" i_stop="95586" i_length="94">
            <donor d_prob="0.931" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="95587" g_stop="95789" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="2692" r_stop="2894" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="95790" i_stop="95883" i_length="94">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="95884" g_stop="96066" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="2895" r_stop="3077" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="96067" i_stop="96450" i_length="384">
            <donor d_prob="0.642" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="96451" g_stop="96546" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="3078" r_stop="3173" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="96547" i_stop="96695" i_length="149">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="96696" g_stop="96893" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="3174" r_stop="3371" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="21">
          <gDNA_intron_boundary i_start="96894" i_stop="97179" i_length="286">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="22">
          <gDNA_exon_boundary g_start="97180" g_stop="97451" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="3372" r_stop="3643" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="22">
          <gDNA_intron_boundary i_start="97452" i_stop="97598" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="23">
          <gDNA_exon_boundary g_start="97599" g_stop="98016" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="3644" r_stop="4065" r_length="422" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E624647" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>4061</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89165" e_stop="89348"/>
          <exon e_start="89491" e_stop="89563"/>
          <exon e_start="89732" e_stop="89863"/>
          <exon e_start="89949" e_stop="90187"/>
          <exon e_start="90306" e_stop="90633"/>
          <exon e_start="91833" e_stop="91932"/>
          <exon e_start="92009" e_stop="92190"/>
          <exon e_start="92301" e_stop="92416"/>
          <exon e_start="92593" e_stop="92695"/>
          <exon e_start="93228" e_stop="93380"/>
          <exon e_start="93465" e_stop="93611"/>
          <exon e_start="93720" e_stop="93920"/>
          <exon e_start="94196" e_stop="94360"/>
          <exon e_start="94435" e_stop="94539"/>
          <exon e_start="94642" e_stop="94782"/>
          <exon e_start="94873" e_stop="95067"/>
          <exon e_start="95366" e_stop="95492"/>
          <exon e_start="95587" e_stop="95789"/>
          <exon e_start="95884" e_stop="96066"/>
          <exon e_start="96451" e_stop="96546"/>
          <exon e_start="96696" e_stop="96893"/>
          <exon e_start="97180" e_stop="97451"/>
          <exon e_start="97599" e_stop="98016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGCTGTATAGAGCGGAGATTATAATTTTGGAAAATGACTTCTGATATGCCACCAGTTAGTATGAGGTCAAGCAGGTCATCTTTTGGCTCAAGCAATGGATATGAAACACCTTCACACTATTCCTTTCCAACCTCAAATGGGGATGATTATGATAGTGATGGTTCTAATTTCGCTCCACCGTAAGCTTTCTTTGACCATTAGATTTACTTCTTTGATCTTATTTCATACTTTGATGAAAATGGGTGGTGTTATCTAATGCTATATCTCCTACCTTACAATTTATTGTTACCAACTGCTTTTTTGCGTTTATGTAATGTGCAGCACTCCGAACACCCTCTCATCAGTCCTGTCACCTGAACTTGCTGGTGCAATACCATATATTGACAGATTCCAGGTAAGAGATGACTTTGCAGAAAAAGAGAATCATTTCAGTCTGTATGCACACAACAAAGATTGGAGTGGCTTTTTTTCTTTTCTGAATTTTGTTAAGAACGACATGGTGGATCTCAATTATGCTTTGCTGCTACTTCAGAGAGGTAATATAGATTCTTTGTGGTTATAGGTTGAAGGTTTCTTGAAGGCTATGCAAAAACAGATTCATTCTGCTAGCAAACGTGGGTTCTTCCTGAAAAAATCTGTTGGGCCGCAAGTTCGAGAAAAATTTACATTTGAGGATATGCTATGTTTTCAAAGGGTGAGATTAAGCTATTTAGCTCTTTACACTTTTGAAAATGTATCTCTCGACACTTGCAGACTAAAAACAACTTGCATCTTGACAGGAACCCATTCCAACATCAATTTTGAAAATAAATGGTGATCTCATTAGCAGGGCAGTTAAATTATTTCAGTCTATTCTGAAGTATATGGGTATTGATTCCTATGATAGAGTGGCTCCAATTAGCTTTGATGAACGGATTGAACTCGTTGGCAAGCTATTTAAGCAGGCCCTGAAGCGATCTGAGCTTCGAGATGAAATGTTTGCACAAATTTCAAAACAAACAAGGAATAATCCAGAGAGGTACTTTGACCATCAAGTATATTGATTGAGAAATGGGAAGCTGATATTCACTTCTTTCTGTTTATTCTGTTGCTTTTAACTTGACAGTGTTCCTCACATGCTTGTTTCATACATATAGGCATTCTTTGATTAAAGCATGGGAGCTGATGTACTTGTGCGCATCTTGCATGCCTCCGAGCAAGGAAATTGGTGGATACTTGTCAGAATATATTCATACTGTAGCACATGGGACTAATACTGATTCCGAAGTTCAAGTTTTTGCTATAAATACTCTAAATGCACTGAAACGTTCGATTAAGGCTGGACCTAGGCACACGATTCCTGGTCGTGAGGAGATCGAAGCTCATTTAACTGGGAAAAAGCTTACTACAATAGTGTTTTTCTTGGATGAAACCTTCGAGGAAATTACCTATGACATGGCAACCACCGTTGCTGATGCTATTGAGGTATTGTTGAATTTCCATATAGTTTATATACAACAAACTTTTTTTCATAAATTAGATGCTAATGTTTGAGTTATACAAACAAGAAATACACATGGGATTTATAATTTGGTAGAACAAAACATAATTTAGGATATCCTTGTTTTTATTTTCCACTTATCTATCCAAGAGCTAATGGCATGTTTGACTCAGTATGAACTTAACATGAAAGTTGGAAAATCTCTAATTTATATGTGGACTATGTTGGGCTTATTAGTTTTTCTTTGGTATTCAGGTTTTTTAATGATAATGAGAAAAGTTGCATGGTAAAAAGTAGGATAACTGTAATTCTTGGTTATTTTATATATGACATATCTTTCCTTCGTTCATGAAAGTGAACACTGCTCTGAAGATACTATAAGAGGGAGGCGACAATGTGTGCAGGAGGGAGTAAGATAATGCTGCATCTCCAAATGTTTTCTTGAATGAAACATCCTTGTAAAATGATTCTCATAAAAATATATATCCTTGAAAAATAAACCTAATTGATAGATGATATGTAGTTTAAGATGTAATAGCAAGCCTTCATTTACAACAGCTTAAATAGTTTGGACTTACACAACTCAACACCTTAAGGCTCTGTTGAGTGCCCTAGGCCATTATAAACCATTTTTGCACTTACATGGCGCATGTGGGACTTGATATTTAACACTAAAATTTCCATTGACAGTTTCAGTCTTTGATCTTTTCCTTTCTTCTTTGTTCTATTCCTTAGATGGTTTCTTTATCAATCTTTGCTTCCTTCCAACATAAATCTCATGTCTGTTCTAAATCTATTATTCACTTGGCTTAGCGTTTAGTGGTAATTGACTTCTGATCAGTCAATGGACAGCTTCTTGTAGTTTTTCTGGAACTTTAACTTTTGTGCTATCTGTCGTTACTTCCTTTTCTCTTCTCTTTTCTTTCTCTTTCTTAGACTCATTTTCTTAAGAGTCAAGAATTTTAATGTTTTGACTTATTATTAGTCATAGATGGCTTAGTCTCTCTAACTTGAATTTCAGAAAGGGCTTTGAGGTCATTTGACATGGTTTATTATCACCTTTTTAATTAAGAAGTCCTCTTTAAGCATTCTTGTTTTCTTGGGAAGCAGATATATTTAACGTTGGATATGATGATAATGTTTTTCCCTTTATAAATTTTGTGTGACATACCTTCTCTTTCAGGAGGTTGCAGGGATAATCAAATTGTCTGCTCATGCTAGCTTCAGTTTGTTCGAGTGCCGTAAGGTTGTTACTGGTTCTAAATCTCCAGACCTTGGAAATGGTACTATTTCCATTCCACATTATTAATTCTTTTAAGGTTGAATATTCTGCATTTTAAACGTGTATATTTTCTGTAGAGGAGTATATCGGTTTGGATGAAAATAAGTATATTGGAGATCTTCTGGCGGACTTTAAGGCATCGAAAGATAGAAGTAAAGGGGAGATTTTGCATTGTAAATTGATTTTCAAGAAAAAGCTGTTTCGGGAGTCAGATGAAGCTGTTACAGAGCCAATGTTCGTGCAATTATCGTATGTTCAAGTATGTTAGTTTGCTTATAATTAATCGAGCTATGCTAAATGTTCAAGTCATTGGTATACCTTCAAATCAAAGTTGATTCTACTATGTAATAATATTTGTTGTGTTCACAGTTACAACATGATTACATAATGGGCAATTATCCTGTTGGCAAGGAAGATGCTGCACAGATGTCTGCTTTGCAGATCCTGGTTGACATTGGATATGTGGATGGCCCTGAATCTTGCACGTCAGTAGTTCATTTTTTAACTTTTGTTCCTTTTAGATTATGCCTCATACTTCCTCCCATATTTGACTGGTCTCCAGTTCCTTGTTCCTTCTCACTATTACTTCTCTTTTCAAAGCCTGAACTTGTTGTAGTGTTTATGCCTTCTCTATATGCTAAGTTGTTTAGTTTTTTTCTAGTGACTGGACATCACTGCTGGAGCGATTTTTACCCAGACAAATTGCAATGACACGGGCAAAGAGGGAATGGGAATTGGACATCCTTTCTCGTTACAAAGTGATGGTAAGAGCTTTATCTAGGCCTTCTTGGTCAATGGATAATGTTCTAAGAAATTGAATAGAAGTTCTTTTATTGACTTTTCCCTTAATGATGCTTTTTATGCTTAACTACATGTGTTTTCATTAATAATAAAAGGTGTTCCTCCAATCAATACTACAAACAAGAACTATGCCTCAGTCCCAAACAAATTGGGGTCGGCTGGATGAATCATTGCCATTCCATTTAAGCCCATGTCATCACCACACAAGTGTTCTCCAATCAATATTAGATTATCTATGTTTCCTGCATTTCTCAAAGTCATTTTTGTGAGCAGGAAAAGAGAATTACCAGCAGTTCTCAGCTGTTGTCCCTGAATTACTTTTTAACTGTTCACTTTGTTCTATTTGTTTATTTTTTTCTTTTCATTGTGGCTAGTATCTCTTCATTTATTTGAAAATCTGCTAGCCAGCTATCCCATGATTGATGTTTAAATTACTTGGATTCTTGTGTTTGTGAACTGCTACCAACATATGGTTCATTCTTTTCTTCTCTTCAGGAAAATCTGACAAAGGATGATGCCAAACAACAATTTTTGCGGATCCTGAGGACGCTTCCTTATGGGAATTCAGTTTTCTTTGCTGTTCGAAAGATTGATGATCCTATTGGACTTTTACCTGGGAAAATTGTATTGGGCATTAATAAGCGTGGGGTATGATATAATGTACAGTGTCGCTTAACTGTTTTAAAAGTGAGATGTGTGTTTACTTTAGGCATGATTTCTGTTTCTCCACAGGTTCATTTTTTCCGTCCAGTTCCAAAGGAATATTTGCATTCAGCTGAGCTTAGGGACATAATGCAATTTGGTAGCAGCAACACTGCTGTGTTCTTTAAGATGAGAGTTGCTGGGGTCTTGCATATATTTCAGTTTGAAACGAAACAGGTTCGAAGTGTTTCTATTACCAATGAACATGCTTATGTTATGAGTTCTTAGATTGTCATTTAATCTGACTCACGATTTTGCATAGCTTGACATCTCCATTCTATGCAGGGAGAAGAAATTTGTGTTGCTCTGCAAACACATATTAATGATGTGATGTTACGCCGTTACTCTAAAGCCCGCTCTTCGGCTAATGGTTCTGTTAACGGAGATGTTCCAAATAATCTCAAAACTACAAACACTGATATTAATGAAAGACGCATTCAGGATTTGTCTAGAGCCCTTGAAGAATCTCAGAAGAAAGTCAATGATGTGAGTGGTATTTGTTGTTGTAGAAGAAACTTATTTGCTTTTTGCGAAGTTAGAATTGAAATGTTTAACTTACAAGGTTTATGCTGCTGGTAATATGAAAACAGAGTTGACTTGTATATTAGAATATATTTCTCATCTCCTTCTGTCAGTTATCTCTCTGGCAAAATGTACATGACACTTATTTGCTCTACCCATTATGCATTCATCCATCTTTTCAATTACTATAGTCATATGCACATTTGCTTTGAGCTCATGATCTTTGTACTGATAAGCAGTTGGTGGAAGATTTACATGAAAGGCAAAAACAAGAATCAGAGATGCAAGAAGAATTGGACAGCTTAAAAGATAACTTGAGTTCTGAGAAGCAAAATTTAGCAGCGGCTGCTTATGATTGTGATAAATTCAGATCTTTATGCGATGAAAAAGATGCTGAGCTTCAGGTGTTTGTTAAATGTGCTTGAATTTGATTTATTGAGGTGACAATCATCTCATTGTATTAGCCCATTCCTTACAGGCTGCCCTAACGGAGAAGCGAAACTTGGAAATGCGTCTTTCAAAGTTAAGTTCTCAAGGTTTGGAGAAAAATATTACGAAAGAGTTGGTTGAAGCAAATAACCAGGTAGAGTTATAAGTTTGTGTCTGACTTTAAATTTTTGTTGAAATAAGTTGGTGAGTTTAATAAACCTACAAAAAACAAAACTTATGTGGCTTTCACTTGCAGGTCTTACAGAAGATCCAAGAAGAGTTGAAAGCTCGTACTATGGATTTGCGTACTGCAGAAGAAACAAAGAGGAGGCTTTTGAGTGAAAAAGCATCACTTGAGGAAAAAGTCATAGGACTAGAAAAGAAGAAATCAAATGAGGTATGTTGCCTCAATGTCTTTGTATTTAGCGTGCATTCTATATTTATATTGATATTTTTATTCGACTGCACTGATTTTTTTGGAGTACAGATGGAAAGCCTTCAGAAAGATTTTGAAAAAGAATGCAAGGGGCTGAAACTCCAAGTCTCTGAACTTCAAAGGAAACTAGAAGAGGCCAAACATGACTTGATTGGTGCACAGTCTGGTCTTGAAGCTAAAGACAAGGAACTAGAAATGCTGCAGAATAATTTGAAGGAGCTTGAGGAGCTGAGAGAAATGAAAGAGGTGAACATCTTGTACTAATATTTACAACAACTATGGTTCTATCCCAAGTCAGTTGCTTTCGCTTATGTGATCCTCAGTACCCATTGGTTTTGAATTGCAAGGGTTCATGATTCAAAACTAATTTATACTGGCAGTGCACTTACTATACCTCTTCCTTTTGATATTTTGGAACTGGCAATGTTAGCAAGCTCACACAGCCAAAGTTTATGCTTAGATATTTGTGTTATAATATATGCCCTATTTGTTATGGCATATCAAGCATCATATTTTCATTTTTAATTTGACAATTATTTAACAGGATATTGATCGAAAAAATGCACAAACTGCTGCCATCTTGAAAATGCAAGGGGCTCAATTGGCAGAAATGGAAGCACTTTACCGGGAAGAACAAGTTCTAAGGAAAAAGTATTTCAACATAATAGAAGGTAAAGTTACCGGCCTTTTTTTTTGCGCCACTGAACAAAAATTATTTGCTATTTCTATTGAAGTGTAATGTTATGGACCTTACTCATGTCTCAGATATGAAAGGCAAGATCAGAGTCTACTGTAGATTAAGACCACTTTGTGAAAAGGAAATTATAGCAAAGGAAAGAAATGCCATCAGAAGTGTTGATGAGTTTACTGTTGAACATTTATGGAAAGATGATAAAGCAAAACAGCACATGTATGATCGTGTCTTTGATGGAAATGCCACCCAAGATGATGTGTTCGAAGATACTAAGGTAAGCAAGAAGTCAATTGATTTCGCTGAGAACTCTGTTAGGATCTAATCTATATTGCCTACCATTTTCTAAGTTTGACATGTTGGTGGTGCAGTACTTGGTTCAATCAGCTGTTGATGGATATAATGTTTGCATATTTGCATATGGACAGACTGGATCTGGCAAGACATTCACAATCTATGGAGCTGATAGTAATCCAGGACTGACACCAAGAGCTATGTCCGAACTCTTTCGAATTATGAAAAAAGACAGTAATAAGTTCTCTTTCTCTTTAAAGGTAGACTCTTCCCATTCTTAAAAGATTATGATAGGTTTTTATTCCGGCTTTAATTAATTTAGGTAGTACATCAATTATGCTTCAAATTACCTTACCTTATAAAGAAGCCACATTAATTATGCTGTGCTTCAAGTTTTTAAATTTCCACTTCTTCAGTGACATTTATTACAAAAGTTGTCAAGACTATGAGTGTTTGAATGTTTTCACCTTTTGAGAATGAGTAAATAAAAACAAATCATTTTTTTTTCAAAAAAATCTTTTCAACTTGTTTTGTTTTCATAAGATTTCTCTCCTTATTCGGTGCTTGTAAGTGATACAGTACCTGAATAGATGGATTTCCAGAAGGCTCATTGTAAACTCACGAGTGTTTATGAACTTGTTCAGGCGTACATGGTAGAGTTGTATCAGGATACGTTGGTGGATCTTTTATTGCCAAAGCAAGCAAAGCGCTTGAAATTGGATATAAAAAAGGACGCAAAGGTGATTGTTATTTGGAGCTTCTTAAATTATCAATACTTAATATGTCAATAAGTCCTTTGCAGTTCTCTTTTCATTTTACTAAGCTTGGATAAGCTTATGTTTATCTTTTAATTTTGGCTGTAACAATTAGCAAAATTTGGCTCAAACAGGGCATGGTTTCTGTGGAGAATGTGACAGTGGTGTCTATTTCAACGTACGAGGAGCTTAAGACAATAATCCAAAGAGGATCTGAACAGCGTCATACGACTGGAACCTTGATGAATGAGCAGAGTTCAAGATCTCATCTTATTGTTTCAGTTATTATCGAGAGTACCAATCTTCAAACTCAGGCGATTGCCAGAGGGAAGGTAGGTGTATCACACCCTTCTGCTTAATTGCCACAATTTGAACTAGTGCGACTTATATGATGTGCATTCTTGGGAATTTCAAAGTGCATCTAGATAGAAGATAGTGATATTGGTCCCTCACTTTTGCTTTAGTTTGAATATTAAACCTCTTCGCATCCTTATAGTTTGATGGAGTAGCTCAAGTTTTATTTCTTAGCATCTTTAGGTAGATTTTAGAGCTAGTATATCTAAAAAGTTTAGCTTTGTATCTTTTGCTTATGCTTTATTCTTTTCTCTGTGTCTGCAGCTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGACGTATGTTCTTTATTGTTTCACTTCTTTATCATGTTATTCATATTTACATGAGCGAATAACTTTCCTCCTTCAATTGGTCATGTCAATCATACGACTTGTATTCAATGGTTACAACTTATCTAGGAATTTGGTTTCCATGCTTCACAGGTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAG-T---TATCTTGTTTAGCTGCCTCAAAA--GTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACT-AAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTAT</genome_strand>
        <mrna_strand>CTGAGAGCTGTATAGAGTGGAGATTATAATTTTGGAAAATGACTTCTGATATGCCAGCAGTTAGTATGAGGTCAAGCAGGTCATCTTTTGGCTCAAGCAATGGATATGAAACACCTTCTCACTATTCCTTTCCAACCTCAAATGGGGATGATTATGATAGTGATGGTTCCAATTTCGCTCCACC..............................................................................................................................................CACTCCAAATACCCTATCATCAGTCCTGTCACCCGAACTTGCTGGTGCGATACCATATATTGACAGATTCCAG........................................................................................................................................................................GTTGAGGGTTTTTTGAAGGCTATGCAAAAACAGATTCACTCTGCTAGCAAACGTGGGTTCTTCCTGAAAAAATCTGTTGGGCCCCAAGTTCGAGAAAAGTTTACATTTGAGGATATGCTGTGTTTCCAAAGG.....................................................................................GAACCCATTCCAACATCAATTTTGAAACTAAATGGTGATCTCATTAGCAGGGCAGTTAAGTTATTTCAGTCTATTCTGAAGTATATGGGTATTGATTCCTATGATAGAGTGGCTCCAATCAGCTTGGATGAACGGATTGAGCTTGTTGGCAAGCTATTTAAGCAGGCCCTGAAGCGATCTGAGCTTCGGGATGAAATGTTTGCACAAATTTCAAAACAAACAAGGAATAATCCAGAGAG......................................................................................................................GCATTCTTTGATTAAAGCATGGGAGCTAATGTACTTGTGCGCATCTTGCATGCCTCCAAGCAAGGAAATTGGTGGATACTTGTCAGAATATATTCATACTGTAGCACATGGGACTAATACTGATTCCGAGGTTCAAGTTTTTGCTATAAATACTCTAAATGCACTGAAACGTTCGATTAAGGCTGGACCTAGGCACACGATACCTGGTCGTGAGGAGATTGAAGCTCATTTAACTGGTAAAAAGCTTACTACAATAGTGTTTTTCTTGGATGAAACTTTCGAGGAAATTACATATGACATGGCAACCACTGTTGCTGATGCTATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGCAGGGATAATCAAATTGTCTGCTCATGTTAGCTTCAGTTTGTTCGAGTGCCGTAAGGTTGTTACTGGATCTAAATCTCCAGACCTTGGAAATG............................................................................AGGAGTATATTGGTTTGGATGAAAATAAGTATATTGGAGATCTTCTGGCGGACTTTAAGGCATCGAAAGATAGAAGTAAAGGAGAGATTTTGCATTGTAAATTGATTTTCAAGAAAAAGTTGTTTCGGGAGTCAGATGAAGCTGTTACAGAGCCAATGTTCGTGCAATTATCGTATGTTCAA..............................................................................................................TTACAACATGATTACATAATGGGAAATTATCCTGTTGGCAAGGAAGATGCTGCACAGATGTCTGCTTTGCAGATCCTGGTTGACATTGGATATGTGGATGGCCCTGAATCTTGCAC................................................................................................................................................................................TGACTGGACATCACTGCTGGAGCGATTTTTACCCAGACAAATTGCAATGACACGGGCAAAGAGGGAATGGGAATTGGACATCCTTTCTCGTTACAAAGTGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCTGACAAAAGATGATGCCAAACAACAATTTTTGCGGATCCTGAGGACACTTCCTTATGGGAATTCAGTTTTCTTTGCTGTTCGGAAGATTGATGATCCAATTGGACTTTTACCTGGGAAAATTGTATTGGGCATTAATAAGCGTGGG....................................................................................GTTCATTTTTTCCGTCCAGTTCCAAAGGAATATTTGCATTCAGCTGAGCTTAGGGACATAATGCAATTTGGTAGCAGCAACACTGCTGTGTTCTTTAAGATGAGAGTTGCTGGTGTCTTGCATATATTTCAGTTTGAAACGAAACAG............................................................................................................GGAGAAGAAATTTGTGTTGCTCTGCAAACACATATTAATGATGTGATGTTACGCCGTTACTCTAAAGCCCGCTCTTCGGCTAATGGTTCTGTTAATGGAGATGTTCCAAATAATCTCAAAACTGCAAACACTGATATTAATGAAAGACGCATTCAGGATTTGTCTAGAGCCCTTGAAGAATCTCAGAAGAAAGTCAATGAT...................................................................................................................................................................................................................................................................................TTGGTGGAAGATTTACATGAAAGGCAAAAACAAGAATCAGAGATGCAAGAAGAATTGGACGGCTTAAAAGATAACTTGAGTTCCGAGAAGCAAAATTTAGCAGCGGCTGCTTATGATTGTGATAAATTCAGATCTTTATGCGATGAAAAAGATGCAGAGCTTCAG..........................................................................GCTGCCCTAACGGAGAAGCGAAACTTGGAAATGCGTCTTTCAAAGTTAAGTTCTCAAGGTTTGGAGAAAAATATTACGAAAGAGTTGGTTGAAGCAAATAACCAG......................................................................................................GTCTTACAGAAGATCCAAGAAGAGTTGAAAGCTCGTACTATGGATTTGCGTACTGCAGAAGAAACAAAGAGGAGGCTTTTGAGTGAAAAAGCATCACTTGAGGAAAAAGTCATAGGACTAGAGAAGAAGAAATCAAATGAG..........................................................................................ATGGAAAACCTTCAGAAAGATTTTGAAAAAGAATGCAAGGGGCTAAGGCTCCAAGTCTCTGAACTTCAAAGGAAACTAGAAGAGGCCAAACACGACTTGATTGGTGCACAGTCTGGTCTTGAAGCTAAAGACAAGGAACTAGAAATGCTACAGAATAATTTAAAGGAGCTTGAGGAGCTGAGAGAAATGAAAGAG..........................................................................................................................................................................................................................................................................................................GATATTGATCGAAAAAATGCACAAACTGCTGCCATCTTGAAAATGCAAGGGGCTCAATTGGCAGAAATGGAAGCACTTTACCGGGAGGAACAAGTTCTGAGGAAAAAGTATTTCAACATAATAGAAG..............................................................................................ATATGAAAGGCAAGATCAGAGTCTACTGTAGATTAAGACCACTTTGTGAAAAGGAAATTATAGCAAAGGAAAGAAATGCCATCAGAAGTGTTGATGAGTTTACCGTTGAACATTTATGGAAAGATGATAAAGCAAAACAGCACATGTATGACCGTGTCTTTGATGGAAATGCCACCCAAGATGATGTGTTCGAAGATACTAAG..............................................................................................TATTTGGTGCAATCAGCTGTTGATGGATATAATGTTTGCATATTTGCATATGGACAAACTGGATCTGGCAAGACATTCACAATCTATGGAGCTGATAGTAATCCAGGACTGACACCAAGAGCTATGTCCGAACTCTTTAGAATTATGAAAAAAGACAGTAATAAGTTCTCTTTCTCTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................GCGTACATGGTAGAGTTGTATCAGGATACGTTGGTAGATCTTTTATTGCCAAAGCAAGCAAAGCGCTTGAAATTGGATATAAAAAAGGATTCAAAG.....................................................................................................................................................GGCATGGTTTCTGTGGAGAATGTGACAGTGGTGTCTATTTCAACGTACGAGGAGCTTAAGACAATAATCCAAAGAGGATCTGAACAGCGTCATACGACTGGAACCTTGATGAATGAGCAGAGTTCAAGATCTCATCTTATTGTTTCAGTTATTATCGAGAGTACCAATCTTCAAACTCAGGCAATTGCCAGAGGGAAG..............................................................................................................................................................................................................................................................................................TTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGAC...................................................................................................................................................GTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCAAAGGAAGTCGCTCGTTTAAAGAAGCTAGTTTCATACTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCAACTAAAGACAAGACTGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGTGGAACGAAAATGAAGTTGAGTATCTTGTTTAGCTGCCTCAAAAGTGTGATGAGGGAAATAGTGAACAATTGAACAGCTTGTTCAAGCTG-G-TACTGAAGTGG-TTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGAGGCTTAAAGAATTTAGCTTAGAGAGTCCTCAATCCTCATGTTGTATAGAGCTATATGTGTATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709934" ref_strand="+" ref_description="SGN-E709934 [FA53CG06]">
      <seq>gtttgcatatttgcatatggacagactggatctggcaagacattcacaatctatggagctgatagtaatccaggactgacaccaagagctatgtccgaactctttcgaattatgaaaaaagaccgtaatacgttctctttctctttaaaggcgtacatggcagagttgtatcacgatacgttggtggatcttttattgccaaagcaagcaaagcgcttgaaattggatataaaaaaggacgcaaagggcatggcttctgtggagaatgcgacagtggtgtctatttcaacgtacgaggagcttaagacaataatccaaagacgatctgaacagcgtcatacgactggaaccttgatgaatgagcagagttcaagatctcatcttattgtttcagatattatcgagagtaccaatcttcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="95617" stop="97172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95917" g_stop="96066" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96067" i_stop="96450" i_length="384">
            <donor d_prob="0.642" d_score="0.96"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96451" g_stop="96546" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96547" i_stop="96695" i_length="149">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96696" g_stop="96872" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="423" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E709934" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95917" e_stop="96066"/>
          <exon e_start="96451" e_stop="96546"/>
          <exon e_start="96696" e_stop="96872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCATATTTGCATATGGACAGACTGGATCTGGCAAGACATTCACAATCTATGGAGCTGATAGTAATCCAGGACTGACACCAAGAGCTATGTCCGAACTCTTTCGAATTATGAAAAAAGACAGTAATAAGTTCTCTTTCTCTTTAAAGGTAGACTCTTCCCATTCTTAAAAGATTATGATAGGTTTTTATTCCGGCTTTAATTAATTTAGGTAGTACATCAATTATGCTTCAAATTACCTTACCTTATAAAGAAGCCACATTAATTATGCTGTGCTTCAAGTTTTTAAATTTCCACTTCTTCAGTGACATTTATTACAAAAGTTGTCAAGACTATGAGTGTTTGAATGTTTTCACCTTTTGAGAATGAGTAAATAAAAACAAATCATTTTTTTTTCAAAAAAATCTTTTCAACTTGTTTTGTTTTCATAAGATTTCTCTCCTTATTCGGTGCTTGTAAGTGATACAGTACCTGAATAGATGGATTTCCAGAAGGCTCATTGTAAACTCACGAGTGTTTATGAACTTGTTCAGGCGTACATGGTAGAGTTGTATCAGGATACGTTGGTGGATCTTTTATTGCCAAAGCAAGCAAAGCGCTTGAAATTGGATATAAAAAAGGACGCAAAGGTGATTGTTATTTGGAGCTTCTTAAATTATCAATACTTAATATGTCAATAAGTCCTTTGCAGTTCTCTTTTCATTTTACTAAGCTTGGATAAGCTTATGTTTATCTTTTAATTTTGGCTGTAACAATTAGCAAAATTTGGCTCAAACAGGGCATGGTTTCTGTGGAGAATGTGACAGTGGTGTCTATTTCAACGTACGAGGAGCTTAAGACAATAATCCAAAGAGGATCTGAACAGCGTCATACGACTGGAACCTTGATGAATGAGCAGAGTTCAAGATCTCATCTTATTGTTTCAGTTATTATCGAGAGTACCAATCTTCAAACT</genome_strand>
        <mrna_strand>GTTTGCATATTTGCATATGGACAGACTGGATCTGGCAAGACATTCACAATCTATGGAGCTGATAGTAATCCAGGACTGACACCAAGAGCTATGTCCGAACTCTTTCGAATTATGAAAAAAGACCGTAATACGTTCTCTTTCTCTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................GCGTACATGGCAGAGTTGTATCACGATACGTTGGTGGATCTTTTATTGCCAAAGCAAGCAAAGCGCTTGAAATTGGATATAAAAAAGGACGCAAAG.....................................................................................................................................................GGCATGGCTTCTGTGGAGAATGCGACAGTGGTGTCTATTTCAACGTACGAGGAGCTTAAGACAATAATCCAAAGACGATCTGAACAGCGTCATACGACTGGAACCTTGATGAATGAGCAGAGTTCAAGATCTCATCTTATTGTTTCAGATATTATCGAGAGTACCAATCTTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589555" ref_strand="+" ref_description="SGN-E589555 [43131]">
      <seq>gtggatcttttattgccaaagcaagcaaagcgcttgaaattggatataaaaaaggattcaaagggcatggtttctgtggagaatgtgacagtggtgtctatttcaacgtacgaggagcttaagacaataatccaaagaggatctgaacagcgtcatacgactggaaccttgatgaatgagcagagttcaagatctcatcttattgtttcagttattatcgagagtaccaatcttcaaactcaggcaattgccagagggaagctgagttttgtggatcttgctggctcagaaagagttaaaaagtctggctcagctggcaatcaattaaaagaagctcaaagcattaacaagtccctgtcagcacttggtgatgttataagtgcattatcttcaggaaatcaacacattccttatcgaaatcacaagctaaccatgttgatgagcgactcgttaggtggaaatgctaaaaccctgatgtttgtaaacatctctccagcagaatcaaacttagatgagactcacaattccttgacgtatgcatcaagagttcgttctattgtaaatgatcccagcaaaaatgtttcctctaaggaagtcgctcgtttaaagaagctagtctcatattggaaggaacaagctggtagaaaaggagatgatgaggaattggaggaaatccaagatgaacgaccaactaaagacaagactgatggtcgttattccatgtaaaacctctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="96184" stop="98101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96484" g_stop="96546" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96547" i_stop="96695" i_length="149">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96696" g_stop="96893" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="261" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96894" i_stop="97179" i_length="286">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97180" g_stop="97451" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="533" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97452" i_stop="97598" i_length="147">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97599" g_stop="97801" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="736" r_length="203" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E589555" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96484" e_stop="96546"/>
          <exon e_start="96696" e_stop="96893"/>
          <exon e_start="97180" e_stop="97451"/>
          <exon e_start="97599" e_stop="97801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATCTTTTATTGCCAAAGCAAGCAAAGCGCTTGAAATTGGATATAAAAAAGGACGCAAAGGTGATTGTTATTTGGAGCTTCTTAAATTATCAATACTTAATATGTCAATAAGTCCTTTGCAGTTCTCTTTTCATTTTACTAAGCTTGGATAAGCTTATGTTTATCTTTTAATTTTGGCTGTAACAATTAGCAAAATTTGGCTCAAACAGGGCATGGTTTCTGTGGAGAATGTGACAGTGGTGTCTATTTCAACGTACGAGGAGCTTAAGACAATAATCCAAAGAGGATCTGAACAGCGTCATACGACTGGAACCTTGATGAATGAGCAGAGTTCAAGATCTCATCTTATTGTTTCAGTTATTATCGAGAGTACCAATCTTCAAACTCAGGCGATTGCCAGAGGGAAGGTAGGTGTATCACACCCTTCTGCTTAATTGCCACAATTTGAACTAGTGCGACTTATATGATGTGCATTCTTGGGAATTTCAAAGTGCATCTAGATAGAAGATAGTGATATTGGTCCCTCACTTTTGCTTTAGTTTGAATATTAAACCTCTTCGCATCCTTATAGTTTGATGGAGTAGCTCAAGTTTTATTTCTTAGCATCTTTAGGTAGATTTTAGAGCTAGTATATCTAAAAAGTTTAGCTTTGTATCTTTTGCTTATGCTTTATTCTTTTCTCTGTGTCTGCAGCTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGACGTATGTTCTTTATTGTTTCACTTCTTTATCATGTTATTCATATTTACATGAGCGAATAACTTTCCTCCTTCAATTGGTCATGTCAATCATACGACTTGTATTCAATGGTTACAACTTATCTAGGAATTTGGTTTCCATGCTTCACAGGTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGA</genome_strand>
        <mrna_strand>GTGGATCTTTTATTGCCAAAGCAAGCAAAGCGCTTGAAATTGGATATAAAAAAGGATTCAAAG.....................................................................................................................................................GGCATGGTTTCTGTGGAGAATGTGACAGTGGTGTCTATTTCAACGTACGAGGAGCTTAAGACAATAATCCAAAGAGGATCTGAACAGCGTCATACGACTGGAACCTTGATGAATGAGCAGAGTTCAAGATCTCATCTTATTGTTTCAGTTATTATCGAGAGTACCAATCTTCAAACTCAGGCAATTGCCAGAGGGAAG..............................................................................................................................................................................................................................................................................................CTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTAGATGAGACTCACAATTCCTTGAC...................................................................................................................................................GTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTAGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGATGAACGACCAACTAAAGACAAGACTGATGGTCGTTATTCCATGTAAAACCTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736551" ref_strand="+" ref_description="SGN-E736551 [LC06AH01]">
      <seq>caatcttcaaactcaggcgattgccagagggaagctgagttttgtggatctttctgagccagcaagagttaaaaagtctggctcagctggcaatcaattaaaagaagctcaaagcattaacaagtccctgtcagcacttggtgatgttataagtgcattatcttcaggaaatcaacacattccttatcgaaatcacaagctaaccatgttgatgagcgactcgttaggtggaaatgctaaaaccctgatgtttgtaaacatctctccagcagaatcaaacttggatgagactcacaattccttgacgtatgcatcaagagttcgttctattgtaaatgatcccagcaaaaatgtttcctctaaggaagtcgctcgtttaaagaagctggtctcatattggaaggaacaagctggtagaaaaggagatgatgaggaattggaggaaatccaagacgaacgaccatctaaagacaagaatgatggtcgttattccatgtaaaacctctcgaattgaacacgcggaacgaaaatcaagttatcttgtttagctgcctcaaaagtgatgaggaaaatagtgaacaattgaacagcttgttcaagctgtgttactaagtggtttgagattttccttcccagaattttgttgtctgattgggtggcttaaagaagttagtttagggagtcctcaatcctcatgttgtatagagttatatgtgtatattatatcaatcaatggttaactacattctttctccccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="96560" stop="98352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96860" g_stop="96893" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96894" i_stop="97179" i_length="286">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97180" g_stop="97451" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="306" r_length="272" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97452" i_stop="97598" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97599" g_stop="98051" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="759" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="760" polyA_stop="772"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E736551" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96860" e_stop="96893"/>
          <exon e_start="97180" e_stop="97451"/>
          <exon e_start="97599" e_stop="98051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCAAACTCAGGCGATTGCCAGAGGGAAGGTAGGTGTATCACACCCTTCTGCTTAATTGCCACAATTTGAACTAGTGCGACTTATATGATGTGCATTCTTGGGAATTTCAAAGTGCATCTAGATAGAAGATAGTGATATTGGTCCCTCACTTTTGCTTTAGTTTGAATATTAAACCTCTTCGCATCCTTATAGTTTGATGGAGTAGCTCAAGTTTTATTTCTTAGCATCTTTAGGTAGATTTTAGAGCTAGTATATCTAAAAAGTTTAGCTTTGTATCTTTTGCTTATGCTTTATTCTTTTCTCTGTGTCTGCAGCTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGACGTATGTTCTTTATTGTTTCACTTCTTTATCATGTTATTCATATTTACATGAGCGAATAACTTTCCTCCTTCAATTGGTCATGTCAATCATACGACTTGTATTCAATGGTTACAACTTATCTAGGAATTTGGTTTCCATGCTTCACAGGTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACTAAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTATATCAATCAATGGTTAACTACATTCTTTCTCCCCAA</genome_strand>
        <mrna_strand>CAATCTTCAAACTCAGGCGATTGCCAGAGGGAAG..............................................................................................................................................................................................................................................................................................CTGAGTTTTGTGGATCTTTCTGAGCCAGCAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGAC...................................................................................................................................................GTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACTAAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTATATCAATCAATGGTTAACTACATTCTTTCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738066" ref_strand="+" ref_description="SGN-E738066 [LC12BA04]">
      <seq>caatcttcaaactcaggcgattgccagagggaagctgagttttgtggatctttctgagccagcaagagttaaaaagtctggctcagctggcaatcaattaaaagaagctcaaagcattaacaagtccctgtcagcacttggtgatgttataagtgcattatcttcaggaaatcaacacattccttatcgaaatcacaagctaaccatgttgatgagcgactcgttaggtggaaatgctaaaaccctgatgtttgtaaacatctctccagcagaatcaaacttggatgagactcacaattccttgacgtatgcatcaagagttcgttctattgtaaatgatcccagcaaaaatgtttcctctaaggaagtcgctcgtttaaagaagctggtctcatattggaaggaacaagctggtagaaaaggagatgatgaggaattggaggaaatccaagacgaacgaccatctaaagacaagaatgatggtcgttattccatgtaaaacctctcgaattgaacacgcggaacgaaaatcaagttatcttgtttagctgcctcaaaagtgatgaggaaaatagtgaacaattgaacagcttgttcaagctgtgttactaagtggtttgagattttccttcccagaattttgttgtctgattgggtggcttaaagaagttagtttagggagtcctcaatcctcatgttgtatagagttatatgtgtatattatatcaatcaatggttaactacattctttctccccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="96560" stop="98352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96860" g_stop="96893" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96894" i_stop="97179" i_length="286">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97180" g_stop="97451" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="306" r_length="272" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97452" i_stop="97598" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97599" g_stop="98051" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="759" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="760" polyA_stop="772"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E738066" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96860" e_stop="96893"/>
          <exon e_start="97180" e_stop="97451"/>
          <exon e_start="97599" e_stop="98051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCAAACTCAGGCGATTGCCAGAGGGAAGGTAGGTGTATCACACCCTTCTGCTTAATTGCCACAATTTGAACTAGTGCGACTTATATGATGTGCATTCTTGGGAATTTCAAAGTGCATCTAGATAGAAGATAGTGATATTGGTCCCTCACTTTTGCTTTAGTTTGAATATTAAACCTCTTCGCATCCTTATAGTTTGATGGAGTAGCTCAAGTTTTATTTCTTAGCATCTTTAGGTAGATTTTAGAGCTAGTATATCTAAAAAGTTTAGCTTTGTATCTTTTGCTTATGCTTTATTCTTTTCTCTGTGTCTGCAGCTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGACGTATGTTCTTTATTGTTTCACTTCTTTATCATGTTATTCATATTTACATGAGCGAATAACTTTCCTCCTTCAATTGGTCATGTCAATCATACGACTTGTATTCAATGGTTACAACTTATCTAGGAATTTGGTTTCCATGCTTCACAGGTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACTAAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTATATCAATCAATGGTTAACTACATTCTTTCTCCCCAA</genome_strand>
        <mrna_strand>CAATCTTCAAACTCAGGCGATTGCCAGAGGGAAG..............................................................................................................................................................................................................................................................................................CTGAGTTTTGTGGATCTTTCTGAGCCAGCAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGAC...................................................................................................................................................GTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACTAAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTATATCAATCAATGGTTAACTACATTCTTTCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540161" ref_strand="+" ref_description="SGN-E540161 [TUS-60-E17]">
      <seq>ttcaaactcaggcgattgccagagggaagctgagttttgtggatcttgctggctcagaaagagttaaaaagtctggctcagctggcaatcaattaaaagaagctcaaagcattaacaagtccctgtcagcacttggtgatgttataagtgcattatcttcaggaaatcaacacattccttatcgaaatcacaagctaaccatgttgatgagcgactcgttaggtggaaatgctaaaaccctgatgtttgtaaacatctctccagcagaatcaaacttggatgagactcacaattccttgacgtatgcatcaagagttcgttctattgtaaatgatcccagcaaaaatgtttcctctaaggaagtcgctcgtttaaagaagctggtctcatattggaaggaacaagctggtagaaaaggagatgatgaggaattggaggaaatccaagacgaacgaccatctaaagacaagaatgatggtcgttattccatgtaaaacctctcgaattgaacacgcggaacgaaaatcaagttatcttgtttagctgcctcaaaagtgatgaggaaaaaagtgaacaattgaacagcttgttcaagctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="96565" stop="98198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96865" g_stop="96893" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96894" i_stop="97179" i_length="286">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97180" g_stop="97451" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="301" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97452" i_stop="97598" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97599" g_stop="97898" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="601" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E540161" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96865" e_stop="96893"/>
          <exon e_start="97180" e_stop="97451"/>
          <exon e_start="97599" e_stop="97898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACTCAGGCGATTGCCAGAGGGAAGGTAGGTGTATCACACCCTTCTGCTTAATTGCCACAATTTGAACTAGTGCGACTTATATGATGTGCATTCTTGGGAATTTCAAAGTGCATCTAGATAGAAGATAGTGATATTGGTCCCTCACTTTTGCTTTAGTTTGAATATTAAACCTCTTCGCATCCTTATAGTTTGATGGAGTAGCTCAAGTTTTATTTCTTAGCATCTTTAGGTAGATTTTAGAGCTAGTATATCTAAAAAGTTTAGCTTTGTATCTTTTGCTTATGCTTTATTCTTTTCTCTGTGTCTGCAGCTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGACGTATGTTCTTTATTGTTTCACTTCTTTATCATGTTATTCATATTTACATGAGCGAATAACTTTCCTCCTTCAATTGGTCATGTCAATCATACGACTTGTATTCAATGGTTACAACTTATCTAGGAATTTGGTTTCCATGCTTCACAGGTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGT</genome_strand>
        <mrna_strand>TTCAAACTCAGGCGATTGCCAGAGGGAAG..............................................................................................................................................................................................................................................................................................CTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGAC...................................................................................................................................................GTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAAAAGTGAACAATTGAACAGCTTGTTCAAGCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286396" ref_strand="+" ref_description="SGN-E286396 [cLES-11-P1]">
      <seq>tcaaactcaggcgattgccagagggaagctgagttttgtggatcttgctggctcagaaagagttaaaaagtctggctcagctggcaatcaattaaaagaagctcaaagcattaacaagtccctgtcagcacttggtgatgttataagtgcattatcttcaggaaatcaacacattccttatcgaaatcacaagctaaccatgttgatgagcgactcgttaggtggaaatgctaaaaccctgatgtttgtaaacatctctccagcagaatcaaacttggatgagactcacaattccttgacgtatgcatcaagagttcgttctattgtaaatgatcccagcaaaaatgttttctctaaagaagtcgctcgtttaaagaagctggtctcatattggaaggaacaagctggtagaaaaggagatgatgaggaattggaggaaatccaagacgaacgaccatctaaagacaagaatgatggtcgttattccatgtaaaacctctcgaattgaacacgcggaacgaaaatcaagttatcttgtttagctgcctcaaaagtgatgaggaaaatagtgaacaattgaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="96566" stop="98183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96866" g_stop="96893" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96894" i_stop="97179" i_length="286">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97180" g_stop="97451" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="300" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97452" i_stop="97598" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97599" g_stop="97883" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="585" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E286396" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96866" e_stop="96893"/>
          <exon e_start="97180" e_stop="97451"/>
          <exon e_start="97599" e_stop="97883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCAGGCGATTGCCAGAGGGAAGGTAGGTGTATCACACCCTTCTGCTTAATTGCCACAATTTGAACTAGTGCGACTTATATGATGTGCATTCTTGGGAATTTCAAAGTGCATCTAGATAGAAGATAGTGATATTGGTCCCTCACTTTTGCTTTAGTTTGAATATTAAACCTCTTCGCATCCTTATAGTTTGATGGAGTAGCTCAAGTTTTATTTCTTAGCATCTTTAGGTAGATTTTAGAGCTAGTATATCTAAAAAGTTTAGCTTTGTATCTTTTGCTTATGCTTTATTCTTTTCTCTGTGTCTGCAGCTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGACGTATGTTCTTTATTGTTTCACTTCTTTATCATGTTATTCATATTTACATGAGCGAATAACTTTCCTCCTTCAATTGGTCATGTCAATCATACGACTTGTATTCAATGGTTACAACTTATCTAGGAATTTGGTTTCCATGCTTCACAGGTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGC</genome_strand>
        <mrna_strand>TCAAACTCAGGCGATTGCCAGAGGGAAG..............................................................................................................................................................................................................................................................................................CTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGAC...................................................................................................................................................GTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTTCTCTAAAGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232589" ref_strand="+" ref_description="SGN-E232589 [cLEL-5-G19](-)">
      <seq>aaaaatgtttcctctaaggaagtcgctcgtttaaagaagctggtctcatattggaaggaacaagctggtagaaaaggagatgatgaggaattggaggaaatccaagacgaacgaccatctaaagacaagaatgatggtcgttattccatgtaaaacctctcgaattgaacacgcggaacgaaaatcaagttatcttgtttagctgcctcaaaagtgatgaggaaaatagtgaacaattgaacagcttgttcaagctgtgttactaagtggtttgagattttccttcccagaattttgttgtctgattgggtggcttaaagaagttagtttagggagtcctcaatcctcatgttgtatagagttatatgtgtatattatatcaatcaatggttaactacattctttctccccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="97339" stop="98352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97639" g_stop="98051" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="428"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E232589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97639" e_stop="98051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACTAAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTATATCAATCAATGGTTAACTACATTCTTTCTCCCCAA</genome_strand>
        <mrna_strand>AAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACTAAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTATATCAATCAATGGTTAACTACATTCTTTCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726658" ref_strand="+" ref_description="SGN-E726658 [LA12BH02]">
      <seq>ccgctaataaactccaagttccaaaaaaaaaaatctaaggtaagcgcaagagcaaaaacacaaaatggagagtgaaaattcagtgccagtaattgatttagaggattttccaaggcaattatctaagttaatttgggcatgtgaaaaatggggttgtttcaaaattttgaaccatgataaaatccttccagtttcactcatggcaaagatgaaggaagtggtgagggcattgtttgatcttccaactgaaatcaagaaacgcaacaaagatgtaattgcaggatctgggtatatggctcctagtgaaagaaaccctctttatgaagctttgggtctctatgatatgtcttgtgttgaagatgtaaatgagttttgtactcagttggatgcatctccacatcaaagagagacaatcaagaagtatgctgcagcaattaatggactaatgatggacattctgcaaaagatgagtgaaggattgggactgcgaaatgtttcgtttgaggattggccttgtcagtttaggattaacaagtaccacttcaccccaaaagctgtaggttcctatggggttcagatacacacagactcaggattccttactattctacaggatgatgaatgcgttggtggtctcgaggtcatgaagaagtctggtgaatttgtagcagttgatccttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagactatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="101963" stop="104399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102260" g_stop="102664" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102665" i_stop="103580" i_length="916">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103581" g_stop="103896" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="721" r_length="316" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103897" i_stop="104073" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104074" g_stop="104099" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="747" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E726658" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102260" e_stop="102664"/>
          <exon e_start="103581" e_stop="103896"/>
          <exon e_start="104074" e_stop="104099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAATAAACTCCAAGTTCCAAAAAAAAAAATCTAAGGTAAGAGCAAGAGCAAAAACACAAAATGGAGAGTGAAAATTCAGTGCCAGTAATTGATTTAGAGGATTTTCCAAGGCAATTATCTAAGTTAATTTGGGCATGTGAAGAATGGGGTTGTTTCAGAATTTTGAACCATGATAAAATCCTTCCAGTTTCACTCATGGCAGAGATGAAGGAAGTGGTGAGGGCATTGTTTGATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTAATTGCAGGATCTGGGTATATGGCTCCTAGTGAAAGAAACCCTCTTTATGAAGCTTTGGGTCTCTATGATATGTCTTGTGTTGAAGATGTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACATCAAAGGTTTGATTTTTACTTTTTCAGTTTCTTGAAAATGAAAAAGTTGAGTTCTTTGTTTAGCTCATTGGTGTAACCTTTGATCAATTTGATACGTCAGTGACTTCTCTGTGTGGAATGTTGGAATAGGAAAATTTAGTAAATATAGAAAAAGATAATCTTTTTGGGGCAATCTGAAAAAGGGAAGTAAGACACTTGAATTGGGATGGAGGGAGTACTTTTTTTAGTTTCTTGATAATGGAAAGTTGAGTTCTTTGTGCATTGATAGTTGGTGGTGTTGGAGTTCTGTAAATGAAAAGTAGAGTTCATTTGTTGCTGATATCCTTGATGAATTAGCTATGTGAGTGACTTGCTGATGGGATCTGGAATTGATTTGTTCATATTTGGAGTAAGTTTGGTACTTAATTTTGATACAATAGTTGAAGGAACTTAAATGATCAGTGAAGCTAATAGACACTTGAGAGCTTTTGTTTCTCTTGTTTTTCCTCTTTTTCATAATTGTAATTTGTGTTAAAACAATAACACAAGTGGGGTTTGGGGAGGGTAGTGTGTACACAAACCTTACTGTTACTTTGGGAGGTAGAGGTTGTTTTCTATAGAACCCCGGCTCAAGAAAATAACAAGAGTGAAGAAACAAGGCAAAATACTAAACAAAGCATGACAAAACAATCTGTAACTACAACAAAAATAATGTGATAACCGAAGTACAAGGAACAATAAATAGTAATAGACTATCCAAAAGGAAGTGCTCCTTACAAGCTGTAGTGGCTTAATGAAGAAATTGATATCTGAACATAGTTTAAGAACAATTGGGGCATGTTTGGGTAAAGTGTAAACTATACTTACTTTTCGTGTTGAAGAAATCTGAAAAAACTTTTCTACTATAATGGTTAAAAAGCATTTTGATTGCTACTGTGAACAGAGAGACAATCAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGATTGGGACTGCGAAATGTTTCGTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACCACTTCACCCCAGAAGCTGTAGGTTCCTATGGGGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATACTGCTACTCTACCTAGTTCATTTTCAAGATTTGACGTGTTCCAACAATCTGATGCTAGCCTCTGGCAGAGTTTGTTTAGCAGGAAGTTAGATAATTCCTACTCCCTCACCCCTGGTAAGATAGAGAAAAAAGAACTAGACAATGATACTTTCCTTTTGCTATGTGAAGGTATGGAGCAATGGAAGACTATACTC</genome_strand>
        <mrna_strand>CCGCTAATAAACTCCAAGTTCCAAAAAAAAAAATCTAAGGTAAGCGCAAGAGCAAAAACACAAAATGGAGAGTGAAAATTCAGTGCCAGTAATTGATTTAGAGGATTTTCCAAGGCAATTATCTAAGTTAATTTGGGCATGTGAAAAATGGGGTTGTTTCAAAATTTTGAACCATGATAAAATCCTTCCAGTTTCACTCATGGCAAAGATGAAGGAAGTGGTGAGGGCATTGTTTGATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTAATTGCAGGATCTGGGTATATGGCTCCTAGTGAAAGAAACCCTCTTTATGAAGCTTTGGGTCTCTATGATATGTCTTGTGTTGAAGATGTAAATGAGTTTTGTACTCAGTTGGATGCATCTCCACATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGACAATCAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCAAAAGATGAGTGAAGGATTGGGACTGCGAAATGTTTCGTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACCACTTCACCCCAAAAGCTGTAGGTTCCTATGGGGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGACTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423338" ref_strand="+" ref_description="SGN-E423338 [STM-41-J24]">
      <seq>aaaaaactaaggtaagagcaaaaaacaaaaacaaaaacaaaatggagactgaaaattcagtgccagtaattgatttacaggattttccaaggcaatcatccaagttgatttgggcttgtgaagaatggggttgtttcagaattttgaaccatgataacattcttccagtttcactcatggcagagatgaaggaagtggtgaggacattgtttaatcttccaactgaaatcaagaaacgcaacaaagatgtaattgcaggatctgggtacatggctcctagtgaaaaaaaccctctttatgaagctttgggtctctatgatatgtcttgtcctgaagatgtagatgaattttgtactcagttggatgcatctccacaccaaagaaagacaatcaagaagtatgctgcagcaattaatggactaatgatggacattctgcgaaagatgagtgaagggttgggactgccaaatgtttcctttgaggattggccttgtcagtttaggattaacaagtaccacttcaccccagaagctgtaggttcctctggagttcagatacacacagactcaggattccttactattctacaggatgatgaaagcgttggcggtcttgnagtcatgaagaagtctggtgaatttgtagcagttgatccttggccaaacaccctccttgtgaatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="101983" stop="104183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102319" g_stop="102664" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="382" r_length="346" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102665" i_stop="103580" i_length="916">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103581" g_stop="103883" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="685" r_length="303" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E423338" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102319" e_stop="102664"/>
          <exon e_start="103581" e_stop="103883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATGGAGAGTGAAAATTCAGTGCCAGTAATTGATTTAGAGGATTTTCCAAGGCAATTATCTAAGTTAATTTGGGCATGTGAAGAATGGGGTTGTTTCAGAATTTTGAACCATGATAAAATCCTTCCAGTTTCACTCATGGCAGAGATGAAGGAAGTGGTGAGGGCATTGTTTGATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTAATTGCAGGATCTGGGTATATGGCTCCTAGTGAAAGAAACCCTCTTTATGAAGCTTTGGGTCTCTATGATATGTCTTGTGTTGAAGATGTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACATCAAAGGTTTGATTTTTACTTTTTCAGTTTCTTGAAAATGAAAAAGTTGAGTTCTTTGTTTAGCTCATTGGTGTAACCTTTGATCAATTTGATACGTCAGTGACTTCTCTGTGTGGAATGTTGGAATAGGAAAATTTAGTAAATATAGAAAAAGATAATCTTTTTGGGGCAATCTGAAAAAGGGAAGTAAGACACTTGAATTGGGATGGAGGGAGTACTTTTTTTAGTTTCTTGATAATGGAAAGTTGAGTTCTTTGTGCATTGATAGTTGGTGGTGTTGGAGTTCTGTAAATGAAAAGTAGAGTTCATTTGTTGCTGATATCCTTGATGAATTAGCTATGTGAGTGACTTGCTGATGGGATCTGGAATTGATTTGTTCATATTTGGAGTAAGTTTGGTACTTAATTTTGATACAATAGTTGAAGGAACTTAAATGATCAGTGAAGCTAATAGACACTTGAGAGCTTTTGTTTCTCTTGTTTTTCCTCTTTTTCATAATTGTAATTTGTGTTAAAACAATAACACAAGTGGGGTTTGGGGAGGGTAGTGTGTACACAAACCTTACTGTTACTTTGGGAGGTAGAGGTTGTTTTCTATAGAACCCCGGCTCAAGAAAATAACAAGAGTGAAGAAACAAGGCAAAATACTAAACAAAGCATGACAAAACAATCTGTAACTACAACAAAAATAATGTGATAACCGAAGTACAAGGAACAATAAATAGTAATAGACTATCCAAAAGGAAGTGCTCCTTACAAGCTGTAGTGGCTTAATGAAGAAATTGATATCTGAACATAGTTTAAGAACAATTGGGGCATGTTTGGGTAAAGTGTAAACTATACTTACTTTTCGTGTTGAAGAAATCTGAAAAAACTTTTCTACTATAATGGTTAAAAAGCATTTTGATTGCTACTGTGAACAGAGAGACAATCAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGATTGGGACTGCGAAATGTTTCGTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACCACTTCACCCCAGAAGCTGTAGGTTCCTATGGGGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGG</genome_strand>
        <mrna_strand>ACAAAATGGAGACTGAAAATTCAGTGCCAGTAATTGATTTACAGGATTTTCCAAGGCAATCATCCAAGTTGATTTGGGCTTGTGAAGAATGGGGTTGTTTCAGAATTTTGAACCATGATAACATTCTTCCAGTTTCACTCATGGCAGAGATGAAGGAAGTGGTGAGGACATTGTTTAATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTAATTGCAGGATCTGGGTACATGGCTCCTAGTGAAAAAAACCCTCTTTATGAAGCTTTGGGTCTCTATGATATGTCTTGTCCTGAAGATGTAGATGAATTTTGTACTCAGTTGGATGCATCTCCACACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACAATCAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGGTTGGGACTGCCAAATGTTTCCTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACCACTTCACCCCAGAAGCTGTAGGTTCCTCTGGAGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGCGGTCTTGNAGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450239" ref_strand="+" ref_description="SGN-E450239 [cSTS-8-F6]">
      <seq>aaaaaactaaggtaagagcaaaaaacaaaaacaaaaacaaaatggagactgaaaattcagtgccagtaattgatttacaggattttccaaggcaatcatccaagttgatttgggcttgtgaagaatggggttgtttcagaattttgaaccatgataacattcttccagtttcactcatggcagagatgaaggaagtggtgaggacattgtttaatcttccaactgaaatcaagaaacgcaacaaagatgtaattgcaggatctgggtacatggctcctagtgaaaaaaaccctctttatgaagctttgggtctctatgatatgtcttgtcctgaagatgtagatgaattttgtactcagttggatgcatctccacaccaaagaaagacaatcaagaagtatgctgcagcaattaatggactaatgatggacattctgcgaaagatgagtgaagggttgggactgccaaatgtttcctttgaggattggccttgtcagtttaggattaacaagtaccacttcaccccagaagctgtaggttcctctggagttcagatacacacagactcangattccttactattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="101983" stop="104086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102319" g_stop="102664" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="382" r_length="346" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102665" i_stop="103580" i_length="916">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103581" g_stop="103786" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="588" r_length="206" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E450239" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102319" e_stop="102664"/>
          <exon e_start="103581" e_stop="103786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATGGAGAGTGAAAATTCAGTGCCAGTAATTGATTTAGAGGATTTTCCAAGGCAATTATCTAAGTTAATTTGGGCATGTGAAGAATGGGGTTGTTTCAGAATTTTGAACCATGATAAAATCCTTCCAGTTTCACTCATGGCAGAGATGAAGGAAGTGGTGAGGGCATTGTTTGATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTAATTGCAGGATCTGGGTATATGGCTCCTAGTGAAAGAAACCCTCTTTATGAAGCTTTGGGTCTCTATGATATGTCTTGTGTTGAAGATGTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACATCAAAGGTTTGATTTTTACTTTTTCAGTTTCTTGAAAATGAAAAAGTTGAGTTCTTTGTTTAGCTCATTGGTGTAACCTTTGATCAATTTGATACGTCAGTGACTTCTCTGTGTGGAATGTTGGAATAGGAAAATTTAGTAAATATAGAAAAAGATAATCTTTTTGGGGCAATCTGAAAAAGGGAAGTAAGACACTTGAATTGGGATGGAGGGAGTACTTTTTTTAGTTTCTTGATAATGGAAAGTTGAGTTCTTTGTGCATTGATAGTTGGTGGTGTTGGAGTTCTGTAAATGAAAAGTAGAGTTCATTTGTTGCTGATATCCTTGATGAATTAGCTATGTGAGTGACTTGCTGATGGGATCTGGAATTGATTTGTTCATATTTGGAGTAAGTTTGGTACTTAATTTTGATACAATAGTTGAAGGAACTTAAATGATCAGTGAAGCTAATAGACACTTGAGAGCTTTTGTTTCTCTTGTTTTTCCTCTTTTTCATAATTGTAATTTGTGTTAAAACAATAACACAAGTGGGGTTTGGGGAGGGTAGTGTGTACACAAACCTTACTGTTACTTTGGGAGGTAGAGGTTGTTTTCTATAGAACCCCGGCTCAAGAAAATAACAAGAGTGAAGAAACAAGGCAAAATACTAAACAAAGCATGACAAAACAATCTGTAACTACAACAAAAATAATGTGATAACCGAAGTACAAGGAACAATAAATAGTAATAGACTATCCAAAAGGAAGTGCTCCTTACAAGCTGTAGTGGCTTAATGAAGAAATTGATATCTGAACATAGTTTAAGAACAATTGGGGCATGTTTGGGTAAAGTGTAAACTATACTTACTTTTCGTGTTGAAGAAATCTGAAAAAACTTTTCTACTATAATGGTTAAAAAGCATTTTGATTGCTACTGTGAACAGAGAGACAATCAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGATTGGGACTGCGAAATGTTTCGTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACCACTTCACCCCAGAAGCTGTAGGTTCCTATGGGGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTAC</genome_strand>
        <mrna_strand>ACAAAATGGAGACTGAAAATTCAGTGCCAGTAATTGATTTACAGGATTTTCCAAGGCAATCATCCAAGTTGATTTGGGCTTGTGAAGAATGGGGTTGTTTCAGAATTTTGAACCATGATAACATTCTTCCAGTTTCACTCATGGCAGAGATGAAGGAAGTGGTGAGGACATTGTTTAATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTAATTGCAGGATCTGGGTACATGGCTCCTAGTGAAAAAAACCCTCTTTATGAAGCTTTGGGTCTCTATGATATGTCTTGTCCTGAAGATGTAGATGAATTTTGTACTCAGTTGGATGCATCTCCACACCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACAATCAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGGTTGGGACTGCCAAATGTTTCCTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACCACTTCACCCCAGAAGCTGTAGGTTCCTCTGGAGTTCAGATACACACAGACTCANGATTCCTTACTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263683" ref_strand="-" ref_description="SGN-E263683 [cLEG-60-A24]">
      <seq>gagtgaaggattgggactgcgaaatgttttcgtttgaggattggccttgtcagtttaggattaaacaagtaccacttcacccccagaagctgtagtttcntatggggttcagatacacacagactcaggattccttactattctacaggatgatgaatgcgttggtggtctcgaggtcatgaagaagtctggtgaatttgtagcagttgatccttggccaaacaccctcccttgtgaatcttggagacataggcacggtatggagcaatggaagactatactccgccaagcatagagtgatatgcaaggaagcaaaactacgagtgtctattgcttcattcctcttgggaccaagggacacggcagtggaaccaccacctgagctggtaaatgctgaacacccccgtatctatgttcctttcactttcaatgattataggaagctccgtttatcgacaaagttgcaggcaggggaagctcttgatcttatgcgaactaacctgtaaaactttggaaagcatctcaggtcctccgttatattgatttacagaaatgatcttgaaagtaagaaagataatatatcttagtgggatttcatcatctatatatcgtcatatgtgtggtggagcaataaaatcatatgtgcacacatcgaatttttagatggaaattatttggttcttgatcccgaaccaattgtgataggagaaccttgttggcttgatgcatacatgttaaataaactcatctgataccaaattttatttgagagattcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="103344" stop="104895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103644" g_stop="103896" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103897" i_stop="104073" i_length="177">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104074" g_stop="104595" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="779" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E263683" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263683" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103644" e_stop="103896"/>
          <exon e_start="104074" e_stop="104595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAGGATTGGGACTGCGAAATG-TTTCGTTTGAGGATTGGCCTTGTCAGTTTAGGATT-AACAAGTACCACTTCACCCC-AGAAGCTGTAGGTTCCTATGGGGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCT-CCTTGTGAATCTTGGAGACATAGGCACGGTAACTATACTGCTACTCTACCTAGTTCATTTTCAAGATTTGACGTGTTCCAACAATCTGATGCTAGCCTCTGGCAGAGTTTGTTTAGCAGGAAGTTAGATAATTCCTACTCCCTCACCCCTGGTAAGATAGAGAAAAAAGAACTAGACAATGATACTTTCCTTTTGCTATGTGAAGGTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGTT</genome_strand>
        <mrna_strand>GAGTGAAGGATTGGGACTGCGAAATGTTTTCGTTTGAGGATTGGCCTTGTCAGTTTAGGATTAAACAAGTACCACTTCACCCCCAGAAGCTGTAGTTTCNTATGGGGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357669" ref_strand="+" ref_description="SGN-E357669 [cTOS-24-I10]">
      <seq>agactcaggattccttactattctacaggatgatgaatgcgttggtggtctcgaggtcatgaagaagtctggtgaatttgtagcagttgatccttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagactatactccgccaagcatagagtgatatgcaaggaagcaaaactacgagtgtctattgcttcattcctcttgggaccaagggacacggcagtggaaccaccacctgagctggtaaatgctgaacacccccgtatctatgttcctttcactttcaatgattataggaagctccgtttatcgacaaagttgcaggcaggggaagctcttgatcttatgcgaactaacctgtaaaactttggaaagcatctcaggtcctccgttatattgatttacagaaatgatcttgaaagtaagaaagataatatatcttagtgggatttcatcatctatatatcgtcatatgtgtggtggagcaatnaaatcatatgtgcacacatcgaatttttagatggaaattatttggttcttgatcccgaaccaattgtgataggagaaccttgttggcttgatgcatacatggntaataaactcatctgataccaaattttatttgagagattcgnntctcatatcaatggtctagctattattggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="103461" stop="104928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103761" g_stop="103896" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103897" i_stop="104073" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104074" g_stop="104626" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="689" r_length="553" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E357669" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103761" e_stop="103896"/>
          <exon e_start="104074" e_stop="104626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATACTGCTACTCTACCTAGTTCATTTTCAAGATTTGACGTGTTCCAACAATCTGATGCTAGCCTCTGGCAGAGTTTGTTTAGCAGGAAGTTAGATAATTCCTACTCCCTCACCCCTGGTAAGATAGAGAAAAAAGAACTAGACAATGATACTTTCCTTTTGCTATGTGAAGGTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCG-TTCTCATAATCAATGGTCTAGCTATTATTGGAG</genome_strand>
        <mrna_strand>AGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATNAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGGNTAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGNNTCTCAT-ATCAATGGTCTAGCTATTATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357519" ref_strand="+" ref_description="SGN-E357519 [cTOS-23-B19]">
      <seq>agactcaggattccttactattctacaggatgatgaatgcgttggtggtctcgaggtcatgaagaagtctggtgaatttgtagcagttgatccttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagactatactccgccaagcatagagtgatatgcaaggaagcaaaactacgagtgtctattgcttcattcctcttgggaccaagggacacggcagtggaaccaccacctgagctggtaaatgctgaacacccccgtatctatgttcctttcactttcaatgattataggaagctccgtttatcgacaaagttgcaggcaggggaagctcttgatcttatgcgaactaacctgtaaaactttggaaagcatctcaggtcctccgttatattgatttacagaaatgatcttgaaagtaagaaagataatatatcttagtgggatttcatcatctatatatcgtcatatgtgtggtggagcaataaaatcatatgtgcacacatcgaatttttagatggaaattatttggttcttgatcccgaaccaattgtgataggagaaccttgttggcttgatgcatacatgttaaataaactcatctgataccaaattttatttgagagattcgttctcataatcaatggtctagctattattggaggcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="103461" stop="104934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103761" g_stop="103896" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103897" i_stop="104073" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104074" g_stop="104626" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="689" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E357519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103761" e_stop="103896"/>
          <exon e_start="104074" e_stop="104626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATACTGCTACTCTACCTAGTTCATTTTCAAGATTTGACGTGTTCCAACAATCTGATGCTAGCCTCTGGCAGAGTTTGTTTAGCAGGAAGTTAGATAATTCCTACTCCCTCACCCCTGGTAAGATAGAGAAAAAAGAACTAGACAATGATACTTTCCTTTTGCTATGTGAAGGTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGTTCTCATAATCAATGGTCTAGCTATTATTGGAG</genome_strand>
        <mrna_strand>AGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGTTCTCATAATCAATGGTCTAGCTATTATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353365" ref_strand="+" ref_description="SGN-E353365 [cTOS-15-K12]">
      <seq>agactcaggattccttactattctacaggatgatgaatgcgttggtggtctcgaggtcatgaagaagtctggtgaatttgtagcagttgatccttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagactatactccgccaagcatagagtgatatgcaaggaagcaaaactacgagtgtctattgcttcattcctcttgggaccaagggacacggcagtggaaccaccacctgagctggtaaatgctgaacacccccgtatctatgttcctttcactttcaatgattataggaagctccgtttatcgacaaagttgcaggcaggggaagctcttgatcttatgcgaactaacctgtaaaactttggaaagcatctcaggtcctccgttatattgatttacagaaatgatcttgaaagtaagaaagataatatatcttagtgggatttcatcatctatatatcgtcatatgtgtggtggagcaataaaatcatatgtgcacacatcgaatttttagatggaaattattttgggtcttgatcccgaaccaattgtgataggagaaccttgttgggctgatgcatacatgttaaataaactcatctgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="103461" stop="104871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103761" g_stop="103896" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103897" i_stop="104073" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104074" g_stop="104571" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="635" r_length="499" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E353365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103761" e_stop="103896"/>
          <exon e_start="104074" e_stop="104571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATACTGCTACTCTACCTAGTTCATTTTCAAGATTTGACGTGTTCCAACAATCTGATGCTAGCCTCTGGCAGAGTTTGTTTAGCAGGAAGTTAGATAATTCCTACTCCCTCACCCCTGGTAAGATAGAGAAAAAAGAACTAGACAATGATACTTTCCTTTTGCTATGTGAAGGTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTT-GGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATAC</genome_strand>
        <mrna_strand>AGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTTGGGTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGGCTGATGCATACATGTTAAATAAACTCATCTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712540" ref_strand="+" ref_description="SGN-E712540 [FB05AE09]">
      <seq>gacacggcagtggaaccaccacctgagctggtaaatgctgaacacccccgtatctatgttcctttcactttcaatgattataggaagctccgtttatcgacaaagttgcaggcaggggaagctcttgatcttatgcgaactaacctgtaaaactttggaaagcatctcaggtcctccgttatattgatttacagaaatgatcttgaaagtaagaaagataatatatcttagtgggatttcatcatctatatatcgtcatatgtgtggtggagcaataaaatcatatgtgcacacatcgaatttttagatggaaattatttggttcttgatcccgaaccaattgtgataggagaaccttgttggcttgatgcatacatgttaaataaactcatctgataccaaattttatttgagagattcgttctcataatcaatggtctagctattattggaggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="103873" stop="104934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104173" g_stop="104626" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="468"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E712540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104173" e_stop="104626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGTTCTCATAATCAATGGTCTAGCTATTATTGGAG</genome_strand>
        <mrna_strand>GACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGTTCTCATAATCAATGGTCTAGCTATTATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257942" ref_strand="+" ref_description="SGN-E257942 [cLEG-48-A16]">
      <seq>aacgaatctctcaaataaaatttggtatcagatgagtttatttaacatgtatgcatcaagccaacaaggttctcctatcacaattggttcgggatcaagaaccaaataatttccatctaaaaattcgatgtgtgcacatatgattttattgctccaccacacatatgacgatatatagatgatgaaatcccactaagatatattatctttcttactttcaagatcatttctgtaaatcaatataacggaggacctgagatgctttccaaagttttacaggttagttcgcataagatcaagagcttcccctgcctgcaactttgtcgataaacggagcttcctataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="104895" stop="103949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104595" g_stop="104249" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E257942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104595" e_stop="104249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAATCTCTCAAATAAAATTTGGTATCAGATGAGTTTATTTAACATGTATGCATCAAGCCAACAAGGTTCTCCTATCACAATTGGTTCGGGATCAAGAACCAAATAATTTCCATCTAAAAATTCGATGTGTGCACATATGATTTTATTGCTCCACCACACATATGACGATATATAGATGATGAAATCCCACTAAGATATATTATCTTTCTTACTTTCAAGATCATTTCTGTAAATCAATATAACGGAGGACCTGAGATGCTTTCCAAAGTTTTACAGGTTAGTTCGCATAAGATCAAGAGCTTCCCCTGCCTGCAACTTTGTCGATAAACGGAGCTTCCTATAAT</genome_strand>
        <mrna_strand>AACGAATCTCTCAAATAAAATTTGGTATCAGATGAGTTTATTTAACATGTATGCATCAAGCCAACAAGGTTCTCCTATCACAATTGGTTCGGGATCAAGAACCAAATAATTTCCATCTAAAAATTCGATGTGTGCACATATGATTTTATTGCTCCACCACACATATGACGATATATAGATGATGAAATCCCACTAAGATATATTATCTTTCTTACTTTCAAGATCATTTCTGTAAATCAATATAACGGAGGACCTGAGATGCTTTCCAAAGTTTTACAGGTTAGTTCGCATAAGATCAAGAGCTTCCCCTGCCTGCAACTTTGTCGATAAACGGAGCTTCCTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350400" ref_strand="+" ref_description="SGN-E350400 [cTOS-5-F3]">
      <seq>ttttatcttccaactgaaatcaagaaacgcaacaaagatgtacttgtaggatctgggtacatggctcctagtgaaaaaaaccctctttatgaagcttttggtctctataatatgtcttgtcatgaagatttagatgagttttgtactcagttggatgcatctccacaccaaagagagacaattaagaagtatgctgcagcaattaatggactaatgatggacattctgcgaaagatgagtgaagggttgggactgccaaatgtttcttttgaggattggccttgtcagtttaggattaacaagtacaacttcacgccagaagttgtaggttcctctggggttcagatacacacagacttggcattccttactattctacaggatgatgaaagcgttggtggtcttgaggtaatgaagaagtctggtgaatttgtagcagttgatcgttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagattacactctgtcaagcatagagtgatatgcaaggaagcaaaactacgggtatctattgcttcattcatcttgggaacaagggacacagcagtggaaccaccatctgagctggtagatgctgaacacccccgtatgtatgtccttttcactttcactgattatagaaagctccgttanctcacaaagttgcaggcaggggaaactcttgaacttatgcgtactaacttgtaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="108285" stop="110885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108585" g_stop="108757" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108758" i_stop="109839" i_length="1082">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.394" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109840" g_stop="110155" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="489" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110156" i_stop="110332" i_length="177">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110333" g_stop="110585" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="741" r_length="252" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E350400" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108585" e_stop="108757"/>
          <exon e_start="109840" e_stop="110155"/>
          <exon e_start="110333" e_stop="110585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTACTTGTAGGATCTGGGTACATGGCTCCTAGTGAAAAAAACCCTCTTTATGAAGCTTTTGGTCTCTATAATATGTCTTGTCATGAAGATTTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACACCAAAGGTTCGATTTTTACTTTTTTAAGTTTCTTGAAAATGAATAAGTTGAGTTCATTGCTGTTTCCTTTGATCAATTAGCTATGTTCAGTGAAAAAATTAGTAGGTAAATATAGAAAAAGACAATCTTTTTGGTTTCTTGATGATGGAAAGTTTAGTTCTTTGTGCATTATAAGTTGTTTGATGAAGTTTTGAAATGAATAGTAGGATTCATTGTTGTTACCCTTGATCAATTAGCTTGTGACTTTTGTCATGTAGAGTGTCGAATTGGAAATTTACTAAGTGTAGAAAAAGACACTTTGTGGGACAGATAGGAAATGGAAAGTAAGACACTTGAATTGGGACAGAGGGAGTACTTATTTAGTGTTCTCGATAATGAAAAGTTGAGTTCTTTGTGCATCATTAATAGTTGGTATTGCTGTTTTGAAAATGAAAAGCAGGATTTATTTATTACGGATAATCCTTGATAAATTAGCTATGTCAGCGACTTGCTGGTGGGATCTGGAAGTGATTTGTTCGTATTGCTAGCAAATTTAGTACTTATGTTTAGCACAGTAGTTTAAGGAACTTCAATGATCAGTGAAGCTAATAATCACTTAATTTTCTCTTGTTTCTTACTTTAGTTTTTTTCATATTTGCAATATGAGTTAAACACCAACATACTCAGTTTAGTCCTGGGGTCTGGGGAAGTTAGTGTGTATGTAAACATTACCCTACTTTGGGAGGTTGATTCCGATAGACCCTCAGCTTAAGAAAATAAGAGTACTGAAGAAACAAGGCATGACCAAGCAATCTATAACTACAACAAAATAATTAGATTATTGAAGTACAAGGAATAATAAATAGTAACAGAAATCAAAGAAATAAGAAACTACAAGAGTAATACTACGACTATCCTAAAAGAAGTGCTTCTTACATGCTGGAGTGGCATCATAAAGAAATTAACAAGAAAAAGGAATCGGTATTTGGATATATTTTAAAAATTGTGGGAATCTTTGGGTAAATTATACTTACATTTCATATTGAAGAAATCTCAAAAGACTGCTCTCCAAGAATGCTTAATAGCAGTTTGATTGCTACTGTGAACAGAGAGACAATTAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGGTTGGGACTGCCAAATGTTTCTTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACAACTTCACGCCAGAAGTTGTAGGTTCCTCTGGGGTTCAGATACACACAGACTTGGCATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATGCTGCTACTCTACCTAGTTCGTTTTCAAGATTTGACGTGTTCCAACAATCTGATGCCAGCCTCTGGCAGGGTTTGTTTAGCAGGAACTTAGATAATTCCTACTCCCTTACCCCTTGTAAAATTGAGATAAAAGAAGTAGACAGTGATACTTGCCTTTTGCAATGTGAAGGTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACT</genome_strand>
        <mrna_strand>TTTTATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTACTTGTAGGATCTGGGTACATGGCTCCTAGTGAAAAAAACCCTCTTTATGAAGCTTTTGGTCTCTATAATATGTCTTGTCATGAAGATTTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACACCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGACAATTAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGGTTGGGACTGCCAAATGTTTCTTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACAACTTCACGCCAGAAGTTGTAGGTTCCTCTGGGGTTCAGATACACACAGACTTGGCATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGAACAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTCCTTTTCACTTTCACTGATTATAGAAAGCTCCGTTANCTCACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGT-AAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272156" ref_strand="+" ref_description="SGN-E272156 [cLEN-4-I1]">
      <seq>cctagtgaaaaaaaccctctttatgaagcttctggtctctataatatgtcttgtcatgaagatttagatgagttttgtactcagttggatgcatctccacaccaaagagagacaattaagaagtatgctgcagcaattaatggactaatgatggacattctgcgaaagatgagtgaagggttgggactgccaaatgtttcttttgaggattggccttgtcagtttaggattaacaagtacaacttcacgccagaagttgtaggttcctctggggttcagatacacacagacttggcattccttactattctacaggatgatgaaagcgttggtggtcttgaggtaatgaagaagtctggtgaatttgtagcagttgatcgttggccaaacaccctccttgtgaatcttggagacataagcacggtatggagcaatggaagattacactctgtcaagcatagagtgatatgcaaggaagcaaaactacgggtatctattgcttcattcatcttgggaccaagggacacagcagtggaaccaccatctgagctggtagatgctgaacacccccgcatgtatgttcctttcactttcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="108351" stop="110807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108651" g_stop="108757" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108758" i_stop="109839" i_length="1082">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.394" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109840" g_stop="110155" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="423" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110156" i_stop="110332" i_length="177">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110333" g_stop="110507" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="598" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E272156" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108651" e_stop="108757"/>
          <exon e_start="109840" e_stop="110155"/>
          <exon e_start="110333" e_stop="110507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGTGAAAAAAACCCTCTTTATGAAGCTTTTGGTCTCTATAATATGTCTTGTCATGAAGATTTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACACCAAAGGTTCGATTTTTACTTTTTTAAGTTTCTTGAAAATGAATAAGTTGAGTTCATTGCTGTTTCCTTTGATCAATTAGCTATGTTCAGTGAAAAAATTAGTAGGTAAATATAGAAAAAGACAATCTTTTTGGTTTCTTGATGATGGAAAGTTTAGTTCTTTGTGCATTATAAGTTGTTTGATGAAGTTTTGAAATGAATAGTAGGATTCATTGTTGTTACCCTTGATCAATTAGCTTGTGACTTTTGTCATGTAGAGTGTCGAATTGGAAATTTACTAAGTGTAGAAAAAGACACTTTGTGGGACAGATAGGAAATGGAAAGTAAGACACTTGAATTGGGACAGAGGGAGTACTTATTTAGTGTTCTCGATAATGAAAAGTTGAGTTCTTTGTGCATCATTAATAGTTGGTATTGCTGTTTTGAAAATGAAAAGCAGGATTTATTTATTACGGATAATCCTTGATAAATTAGCTATGTCAGCGACTTGCTGGTGGGATCTGGAAGTGATTTGTTCGTATTGCTAGCAAATTTAGTACTTATGTTTAGCACAGTAGTTTAAGGAACTTCAATGATCAGTGAAGCTAATAATCACTTAATTTTCTCTTGTTTCTTACTTTAGTTTTTTTCATATTTGCAATATGAGTTAAACACCAACATACTCAGTTTAGTCCTGGGGTCTGGGGAAGTTAGTGTGTATGTAAACATTACCCTACTTTGGGAGGTTGATTCCGATAGACCCTCAGCTTAAGAAAATAAGAGTACTGAAGAAACAAGGCATGACCAAGCAATCTATAACTACAACAAAATAATTAGATTATTGAAGTACAAGGAATAATAAATAGTAACAGAAATCAAAGAAATAAGAAACTACAAGAGTAATACTACGACTATCCTAAAAGAAGTGCTTCTTACATGCTGGAGTGGCATCATAAAGAAATTAACAAGAAAAAGGAATCGGTATTTGGATATATTTTAAAAATTGTGGGAATCTTTGGGTAAATTATACTTACATTTCATATTGAAGAAATCTCAAAAGACTGCTCTCCAAGAATGCTTAATAGCAGTTTGATTGCTACTGTGAACAGAGAGACAATTAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGGTTGGGACTGCCAAATGTTTCTTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACAACTTCACGCCAGAAGTTGTAGGTTCCTCTGGGGTTCAGATACACACAGACTTGGCATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATGCTGCTACTCTACCTAGTTCGTTTTCAAGATTTGACGTGTTCCAACAATCTGATGCCAGCCTCTGGCAGGGTTTGTTTAGCAGGAACTTAGATAATTCCTACTCCCTTACCCCTTGTAAAATTGAGATAAAAGAAGTAGACAGTGATACTTGCCTTTTGCAATGTGAAGGTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTG</genome_strand>
        <mrna_strand>CCTAGTGAAAAAAACCCTCTTTATGAAGCTTCTGGTCTCTATAATATGTCTTGTCATGAAGATTTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACACCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGACAATTAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGGTTGGGACTGCCAAATGTTTCTTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACAACTTCACGCCAGAAGTTGTAGGTTCCTCTGGGGTTCAGATACACACAGACTTGGCATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAAGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGCATGTATGTTCCTTTCACTTTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353296" ref_strand="+" ref_description="SGN-E353296 [cTOS-15-A23]">
      <seq>ccaaatgtttcttttgaggattggccttgtcagtttaggattaacaagtacaacttcacgccagaagttgtaggttcctctggggttcagatacacacagacttggcattccttactattctacaggatgatgaaagcgttggtggtcttgaggtaatgaagaagtctggtgaatttgtagcagttgatcgttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagattacactctgtcaagcatagagtgatatgcaaggaagcaaaactacgggtatctattgcttcattcatcttgggaccaagggacacagcagtggaaccaccatctgagctggtagatgctgaacacccccgtatgtatgttcctttcactttcactgattatagaaagctccgttactcaacaaagttgcaggcaggggaaactcttgaacttatgcgtactaacttgtaaaactttggcaagcatctaagatcctccggtatattgatttacagaaatgatcttgaaagtaagaaagacatatatcttaatgggatttcatcatctatatatcggccatgatctaagctaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="109622" stop="111006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109922" g_stop="110155" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="110332" i_length="177">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110333" g_stop="110706" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="607" r_length="373" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E353296" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109922" e_stop="110155"/>
          <exon e_start="110333" e_stop="110706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGTTTCTTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACAACTTCACGCCAGAAGTTGTAGGTTCCTCTGGGGTTCAGATACACACAGACTTGGCATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATGCTGCTACTCTACCTAGTTCGTTTTCAAGATTTGACGTGTTCCAACAATCTGATGCCAGCCTCTGGCAGGGTTTGTTTAGCAGGAACTTAGATAATTCCTACTCCCTTACCCCTTGTAAAATTGAGATAAAAGAAGTAGACAGTGATACTTGCCTTTTGCAATGTGAAGGTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAAT</genome_strand>
        <mrna_strand>CCAAATGTTTCTTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACAACTTCACGCCAGAAGTTGTAGGTTCCTCTGGGGTTCAGATACACACAGACTTGGCATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGGTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGAC-ATATATCTTAATGGGATTTCATCATCTATATATCGGCCATGATCTAAGCTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282244" ref_strand="+" ref_description="SGN-E282244 [cLES-4-E4]">
      <seq>gaaagcgttggtggtcttgaggtaatgaagaagtctggtgaatttgtagcagttgatcgttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagattacactctgtcaagcatagagtgatatgcaaggaagcaaaactacgggtatctattgcttcattcatcttgggaccaagggacacagcagtggaaccaccatctgagctggtagatgctgaacacccccgtatgtatgttcctttcactttcactgattatagaaagctccgttactcaacaaagttgcaggcaggggaaactcttgaacttatgcgtactaacttgtaaaactttggcaagcatctaagatcctccgttatattgatttacagaaatgatcttgaaagtaagaaagacaatatatcttagtgggatttcatcatctatatatcgtcaatgatctaagctacaatagcctataaaatggcagagcatttatgcatatcagcaaagcttctattatccatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="109754" stop="111064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110054" g_stop="110155" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="110332" i_length="177">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110333" g_stop="110764" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="534" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E282244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110054" e_stop="110155"/>
          <exon e_start="110333" e_stop="110764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATGCTGCTACTCTACCTAGTTCGTTTTCAAGATTTGACGTGTTCCAACAATCTGATGCCAGCCTCTGGCAGGGTTTGTTTAGCAGGAACTTAGATAATTCCTACTCCCTTACCCCTTGTAAAATTGAGATAAAAGAAGTAGACAGTGATACTTGCCTTTTGCAATGTGAAGGTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAATAGCCTATAAAATGGCAGAGCATTTATGCATATCAGCAAAGCTTCTATTATCCATCTTT</genome_strand>
        <mrna_strand>GAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAATAGCCTATAAAATGGCAGAGCATTTATGCATATCAGCAAAGCTTCTATTATCCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715829" ref_strand="+" ref_description="SGN-E715829 [FB15BE10]">
      <seq>cgtgtatttgtagcagttgatcgttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagattacactctgtcaagcatagagtgatatgcaaggaagcaaaactacgggtatctattgcttcattcatcttgggaccaagggacacagcagtggaaccaccatctgagctggtagatgctgaacacccccgtatgtatgttcctttcactttcactgattatagaaagctccgttactcaacaaagttgcaggcaggggaaactcttgaacttatgcgtactaacttgtaaaactttggcaagcatctaagatcctccgttatattgatttacagaaatgatcttgaaagtaagaaagacaatatatcttagtgggatttcatcatctatatatcgtcaatgatctaagctacaatagcctataaaatggcagagcatttatgcatatcagcaaagcttctattatccatctttgtattgtgtgttcttctgttatctattgctttttaaagaatagaacaggtcttatctttcattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="109791" stop="111131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110090" g_stop="110155" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="110332" i_length="177">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110333" g_stop="110830" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="564" r_length="498" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="577"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E715829" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110090" e_stop="110155"/>
          <exon e_start="110333" e_stop="110830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATGCTGCTACTCTACCTAGTTCGTTTTCAAGATTTGACGTGTTCCAACAATCTGATGCCAGCCTCTGGCAGGGTTTGTTTAGCAGGAACTTAGATAATTCCTACTCCCTTACCCCTTGTAAAATTGAGATAAAAGAAGTAGACAGTGATACTTGCCTTTTGCAATGTGAAGGTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAATAGCCTATAAAATGGCAGAGCATTTATGCATATCAGCAAAGCTTCTATTATCCATCTTTGTATTGTGTGTTCTTCTGTTATCTATTGCTTTTTAAAGAATAGAACAGGTCTTATCTTTCATTACA</genome_strand>
        <mrna_strand>CGTGTATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAATAGCCTATAAAATGGCAGAGCATTTATGCATATCAGCAAAGCTTCTATTATCCATCTTTGTATTGTGTGTTCTTCTGTTATCTATTGCTTTTTAAAGAATAGAACAGGTCTTATCTTTCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713445" ref_strand="+" ref_description="SGN-E713445 [FB08CF06]">
      <seq>gttgatcgttggccaaacaccctccttgtgaatcttggagacataggcacggtatggagcaatggaagattacactctgtcaagcatagagtgatatgcaaggaagcaaaactacgggtatctattgcttcattcatcttgggaccaagggacacagcagtggaaccaccatctgagctggtagatgctgaacacccccgtatgtatgttcctttcactttcactgattatagaaagctccgttactcaacaaagttgcaggcaggggaaactcttgaacttatgcgtactaacttgtaaaactttggcaagcatctaagatcctccgttatattgatttacagaaatgatcttgaaagtaagaaagacaatatatcttagtgggatttcatcatctatatatcgtcaatgatctaagctacaatagcctataaaatggcagagcatttatgcatatcagcaaagcttctattatccatctttgtattgtgtgttcttctgttatctattgctttttaaagaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="109805" stop="111111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110105" g_stop="110155" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="110332" i_length="177">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110333" g_stop="110812" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="531" r_length="480" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="544"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E713445" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110105" e_stop="110155"/>
          <exon e_start="110333" e_stop="110812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACGGTAACTATGCTGCTACTCTACCTAGTTCGTTTTCAAGATTTGACGTGTTCCAACAATCTGATGCCAGCCTCTGGCAGGGTTTGTTTAGCAGGAACTTAGATAATTCCTACTCCCTTACCCCTTGTAAAATTGAGATAAAAGAAGTAGACAGTGATACTTGCCTTTTGCAATGTGAAGGTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAATAGCCTATAAAATGGCAGAGCATTTATGCATATCAGCAAAGCTTCTATTATCCATCTTTGTATTGTGTGTTCTTCTGTTATCTATTGCTTTTTAAAGAATAGAACAG</genome_strand>
        <mrna_strand>GTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG.................................................................................................................................................................................GTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAATAGCCTATAAAATGGCAGAGCATTTATGCATATCAGCAAAGCTTCTATTATCCATCTTTGTATTGTGTGTTCTTCTGTTATCTATTGCTTTTTAAAGAATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380057" ref_strand="+" ref_description="SGN-E380057 [TUS-3-E23](-)">
      <seq>ggcagaaggagtgcttggtacaatgggatacattgcaccagagtgtttccacacagggaaagccacacagcaatctgatgtgtacgcgtttggggcagtgttattggaagttgtatgtggccagagacctggaaccaagattaatggctttcaattctttgttgattgggtttggtacttgcaccgcgatggccgtatcttggaagctgttgatccaaggcttggagatgactatgttgctgatgaagcaaagaaacttttactacttggtttggcttgtgcacatcctatagctactgacaggcctaaaacacaggcaatagttcagattatatcagggtcagcaccagcaccagaagttccaccattcaagccagcatttgtgtggccatcaatggtgccaattgacatagactcaagtgttatggacacaacatccattactacttctcacttcaattcaggatggagtctagactatcaaagcagggagaccccaacatatgcagatcactctttggtgtagttacttgatggtaaacaactattaccaaaaggaaaattgatttttttggccttcaattttttaaaaatatttcctgtaattatgttttcctgggaggaggttaaaaatttccttcagtttttcactttttggaagatgttatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="112012" stop="110756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111712" g_stop="111040" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E380057" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111712" e_stop="111040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGAAGGAGTGCTTGGTACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTATTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGATTAATGGCTTTCAATTCTTTGTTGATTGGGTTTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGATCCAAGGCTTGGAGATGACTATGTTGCTGATGAAGCAAAGAAACTTTTACTACTTGGTTTGGCTTGTGCACATCCTATAGCTACTGACAGGCCTAAAACACAGGCAATAGTTCAGATTATATCAGGGTCAGCACCAGCACCAGAAGTTCCACCATTCAAGCCAGCATTTGTGTGGCCATCAATGGTGCCAATTGACATAGACTCAAGTGTTATGGACACAACATCCATTACTACTTCTCACTTCAATTCAGGATGGAGTCTAGACTATCAAAGCAGGGAGACCCCAACATATGCAGATCACTCTTTGGTGTAGTTACTTGATGGTAAACAACTATTACCAAAAGGAAAATTGATTTTTTTGGCCTTCAATTTTTTAAAAATATTTCCTGTAATTATGTTTTCCTGGGAGGAGGTTAAAAATTTCCTTCAGTTTTTCACTTTTTGTTTGATGTTATTTTTC</genome_strand>
        <mrna_strand>GGCAGAAGGAGTGCTTGGTACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTATTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGATTAATGGCTTTCAATTCTTTGTTGATTGGGTTTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGATCCAAGGCTTGGAGATGACTATGTTGCTGATGAAGCAAAGAAACTTTTACTACTTGGTTTGGCTTGTGCACATCCTATAGCTACTGACAGGCCTAAAACACAGGCAATAGTTCAGATTATATCAGGGTCAGCACCAGCACCAGAAGTTCCACCATTCAAGCCAGCATTTGTGTGGCCATCAATGGTGCCAATTGACATAGACTCAAGTGTTATGGACACAACATCCATTACTACTTCTCACTTCAATTCAGGATGGAGTCTAGACTATCAAAGCAGGGAGACCCCAACATATGCAGATCACTCTTTGGTGTAGTTACTTGATGGTAAACAACTATTACCAAAAGGAAAATTGATTTTTTTGGCCTTCAATTTTTTAAAAATATTTCCTGTAATTATGTTTTCCTGGGAGGAGGTTAAAAATTTCCTTCAGTTTTTCACTTTTTGGAAGATGTTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211185" ref_strand="+" ref_description="SGN-E211185 [cLEC-70-B3]">
      <seq>gacctgaaggcgagtaacatcatgcttgactcaaagttcaatgcgcgccttggggactttggccttgcgcgagcacttgacaacgaaaggacctcgtatgctgaggcagaaggagtgcttggtacaatgggatacattgcaccagagtgtttccacacagggaaagccacacagcaatctgatgtgtacgcgtttggggcagtgttattggaagttgtatgtggccagagacctggaaccaagattaatggctttcaattctttgttgattgggtttggtacttgcaccgcgatggccgtatcttggaagctgttgatccaaggcttggagatgactatgttgctgatgaagcaaagaaacttttactacttggtttggcttgtgcacatcctatagctactgacaggcctaaaacacaggcaatagttcagattatatcagggtcagcaccagcaccagaagttccaccattcaagccagcatttgtgtggccatcaatggtgccaattgacatagactcaagtgttatggacacaacatccattactacttctcacttcaattcaggatggagtctagactatcaaagcagggagaccccaacatatgcagatcactncttggtgtagttacttgatgggtaaacactattaccaaaaggaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="112116" stop="110846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111816" g_stop="111146" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E211185" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111816" e_stop="111146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGAAGGCGAGTAACATCATGCTTGACTCAAAGTTCAATGCGCGCCTTGGGGACTTTGGCCTTGCGCGAGCACTTGACAACGAAAGGACCTCGTATGCTGAGGCAGAAGGAGTGCTTGGTACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTATTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGATTAATGGCTTTCAATTCTTTGTTGATTGGGTTTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGATCCAAGGCTTGGAGATGACTATGTTGCTGATGAAGCAAAGAAACTTTTACTACTTGGTTTGGCTTGTGCACATCCTATAGCTACTGACAGGCCTAAAACACAGGCAATAGTTCAGATTATATCAGGGTCAGCACCAGCACCAGAAGTTCCACCATTCAAGCCAGCATTTGTGTGGCCATCAATGGTGCCAATTGACATAGACTCAAGTGTTATGGACACAACATCCATTACTACTTCTCACTTCAATTCAGGATGGAGTCTAGACTATCAAAGCAGGGAGACCCCAACATATGCAGATCACTCTTTGGTGTAGTTACTTGATGGTAAACAACTATTACCAAAAGGAAAATTGAT</genome_strand>
        <mrna_strand>GACCTGAAGGCGAGTAACATCATGCTTGACTCAAAGTTCAATGCGCGCCTTGGGGACTTTGGCCTTGCGCGAGCACTTGACAACGAAAGGACCTCGTATGCTGAGGCAGAAGGAGTGCTTGGTACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTATTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGATTAATGGCTTTCAATTCTTTGTTGATTGGGTTTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGATCCAAGGCTTGGAGATGACTATGTTGCTGATGAAGCAAAGAAACTTTTACTACTTGGTTTGGCTTGTGCACATCCTATAGCTACTGACAGGCCTAAAACACAGGCAATAGTTCAGATTATATCAGGGTCAGCACCAGCACCAGAAGTTCCACCATTCAAGCCAGCATTTGTGTGGCCATCAATGGTGCCAATTGACATAGACTCAAGTGTTATGGACACAACATCCATTACTACTTCTCACTTCAATTCAGGATGGAGTCTAGACTATCAAAGCAGGGAGACCCCAACATATGCAGATCACTNCTTGGTGTAGTTACTTGATGGGTAAACACTATTACCAAAAGGAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622461" ref_strand="+" ref_description="SGN-E622461 [72828]">
      <seq>tgtttacagaggatttttagctggtgaggagaacaaagatattgctgtcaaatggttttctagggaaagcatcaaagggcaagatgatttcttggctgagcttactattatcaatcgtcttcgacataaacatcttgtcaaattgcttggatggtgtcacaagaatggaaagttactgcttgtatatgaatacatgcctaatggcagtctagatatgcacctctttgcgggcctagataaagagccgttgagctggaacgtccgctacaagattgtgcaaggtgttgcctcagcattgcactatctgcacaatgagtatgagcagagggtggtccatcgcgacctgaaggcgagtaacatcatgcttgactcaaagttcaatgcgcgccttggggactttggccttgcgcgggcacttgacaacgaaaggacctcgtatgctgaggcagaaggtgtgcttggcacaatgggatacattgcaccagagtgtttccacacagggaaagccacacagcaatctgatgtgtacgcgtttggggcagtgttgttggaagttgtatgtggccagagacctggaaccaagactaatggctttcaattctttgtgattgggttggtacttgcaccgcgatggccgtatcttggaagctgttgatccaagggcttggaggtgactatgttgctgatgaaagcagagaaacttctactgccttgtgtttggccttgtgcaacatccctataaggttacttgacaggccttaaaacacaggcaaataagttcacgatctatatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="114403" stop="111075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114103" g_stop="113955" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113954" i_stop="112008" i_length="1947">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112007" g_stop="111439" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="718" r_length="569" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E622461" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114103" e_stop="113955"/>
          <exon e_start="112007" e_stop="111439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTACAGAGGATTTTTAGCTGGTGAGGAGAACAAAGATATTGCTGTCAAATGGTTTTCTAGGGAAAGCATCAAAGGGCAAGATGATTTCTTGGCTGAGCTTACTATTATCAATCGTCTTCGACATAAACATCTTGTCAAATTGCTTGGTAAGTGTTCTTAGTTTTTCTTCAAACATAGATTTTGTGCATTTGTTTGAGTAGAGTATTAGAGTTATATTGTGCATGTTTTGTTTATGATCTTTAATAACGTTAGGGAAATGGTACTGATAACTGATAAAGTTGATGTCATGTGATCCAAAGTTATTAAGACTCTTGTGATCCAATCTTTCTCAGTATAACTACAAGTTTTGAGTCTCAAATAAGGCCTTATCTCCAATATTTCAATTGAAAATTAAACAAATAGGGTAAAGATTAGTTTTTTTTGAGTATGTACATGAAATATGTGAATAACCTTTAAGGCAAAGGAAGTTTCAAATGTAGGGTAAATTTTGCTCAAAATTAGTTGCATTTTCTTGAATTCAGCAATCAGAAATAGAAATTGTCCTCTTATGTTTTTTGATTCTCAATGAAAGAGAGAATTTATTACCAGGATTCATTGATGTGACTTGAAATAATGGTGCCAAAAACCTTGTAAAAGTTGCTGACAATTTAAAGCCAAAGATTGGTGGGACATCAAATTTAATACTCCTTTTGTTTCAATTTATATGGCTTTTTTTCTTCTTTCTTTTTTTATTATAAAAAAGAATGATTTTTTACCTTTTTTATTTCAAACTCCATCTTTTCAACTTTATACGTAATATGTTTAAGAGACTAATATTATAGAATATTTTGTATTTGACATATTTTTTTACTTTAAAATCATAAAAATCTAAAATTCTCTTTATATCTTAAACTTCGTGTAAATCGACATATAAATTGAAACGGAAGGAATTTATGTGATCTGTTTTTCAGACTCTCCAGCAGTGTTGTTGCACATGCATTGGATTCTTTTTAGAAAAAAATACTTTTTTTTTAAGGATCTGATATGTATTCATCGACATTTTTAGAGAGTGAGCAACACTATTACAATAGACTCATTAAATGCATGAGGACATGCCCTTATCTTTTTATGCTTTTCTTTTCCTAGTAACTACTAGTAAGTGATCCATGATCTTACATGCTTCTTCAACTAATTTGTGTAATTTTGGCATGGTACTAGTCTTTCTAGTCTGACATTTAGCATGCTAGGAATTTACTAAGTTGGATCATCTTCTGACAAGCAAATTTCCTCTTTTGAAGAATCAAAGTTTTCTTGAACATTTATAATAACTTGGTCCTCCTTTTTGTCTTCAATCTCCTTTTCCATTCTTAGAATTCTCAAGTCATCCCAAGGATTTGTCTAAGTTTTTGTTACCTGACTAACTAGATTTGCGTCGCATAGGGTCTATCAAAGTGAGAAACACAATATATCAAGAGTGTCTCCAATTTTTTTTAATGTTTGAAGTCGAAACCTCTAGTTAATGAACCACACTCTACTACAGTAAATGTTTTAATAGTTGATGGTACGTAAGAGTTCAAGCCAAAAATATCAAGGAAGTTAGAAAAACTAATGGAATGCCTTAAAAGTTTTGACCAAGAACCAACTTGTTGCTATGGTCCCTCCAATTTAGAAGAACAAGGCACTATCTTGAAGTGCTTCATTTTGATTTGCTTAAAAGAAGATGATCATCCTTTGTTGACCATGGAATAAAGCAGCCATTCGTCAAAGTTCAATACAATTTTTTTATGTCAAAATTTTGTGAAGCTTCCTTCTTGTCCTAACATCCCTTTCATTCATTGTCAATGATTAACACAAGTTTTGGATGTTAGTTGAATGATGATAAATTAAATCCAATGAAAAGGACATTAATTCTGTATTTTAGTATACATTCATATCTTCAAACACCTAATCTTTGTGTCACCTACTCTTGTCATCTGGCCCTACAAAGAGATAAGGTTTGTAAAATACAACAAAAAGTTGACAATTTGGGTAGTGTGCAACTTCTGTATCTAGTTATTTTTACTGATTAAAAAACAAACATAAGCATCTTACAAGATTGCATGTTATGGTGACAGGATGGTGTCACAAGAATGGAAAGCTACTGCTTGTATATGAATACATGCCTAATGGCAGTCTAGATATGCACCTCTTTGCGGGCCCAGATAAAGAGCCGCTGAGCTGGCACGTCCGCTACAAGATTGTGCAAGGTGTGGCCTCAGCATTACATTATCTGCACAATGAGTATGAGCAGAGGGTGGTCCATCGCGACCTGAAGGCGAGTAACATCATGCTTGACTCAAAGTTCAATGCGCGCCTTGGGGACTTTGGCCTTGCGCGAGCACTTGACAACGAAAGGACCTCGTATGCTGAGGCAGAAGGAGTGCTTGGTACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTATTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGATTAATGGCTTTCAATTCTTTGTTGATTGGGTTTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGATCCAA-GGCTTGGAGATGACTATGTTGCTGATG-AAGCAAAGAAACTTTTACTACTTGGTTTG</genome_strand>
        <mrna_strand>TGTTTACAGAGGATTTTTAGCTGGTGAGGAGAACAAAGATATTGCTGTCAAATGGTTTTCTAGGGAAAGCATCAAAGGGCAAGATGATTTCTTGGCTGAGCTTACTATTATCAATCGTCTTCGACATAAACATCTTGTCAAATTGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGTCACAAGAATGGAAAGTTACTGCTTGTATATGAATACATGCCTAATGGCAGTCTAGATATGCACCTCTTTGCGGGCCTAGATAAAGAGCCGTTGAGCTGGAACGTCCGCTACAAGATTGTGCAAGGTGTTGCCTCAGCATTGCACTATCTGCACAATGAGTATGAGCAGAGGGTGGTCCATCGCGACCTGAAGGCGAGTAACATCATGCTTGACTCAAAGTTCAATGCGCGCCTTGGGGACTTTGGCCTTGCGCGGGCACTTGACAACGAAAGGACCTCGTATGCTGAGGCAGAAGGTGTGCTTGGCACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTGTTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGACTAATGGCTTTCAATTCTTTG-TGATTGGG-TTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGATCCAAGGGCTTGGAGGTGACTATGTTGCTGATGAAAGCAGAGAAACTTCTACTGCCTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575293" ref_strand="+" ref_description="SGN-E575293 [34894]">
      <seq>tggaaagttactgcttgtatatgaatacatgcctaatggcagtctagatatgcacctctttgcgggcctagataaagagccgttgagctggaacgtccgctacaagattgtgcaaggtgttgcctcagcattgcactatctgcacaatgagtatgagcagagggtggtccatcgcgacctgaaggcgagtaacatcatgcttgactcaaagttcaatgcgcgccttggggactttggccttgcgcgggcacttgacaacgaaaggacctcgtatgctgaggcagaaggtgtgcttggcacaatgggatacattgcaccagagtgtttccacacagggaaagccacacagcaatctgatgtgtacgcgtttggggcagtgttgttggaagttgtatgtggccagagacctggaaccaagactaatggctttcaattctttgttgattgggtatggtacttgcaccgggatggccgtatcttggaagctgttgatcccaaggctttggaaggtgactatgttgcttgatgaaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="112291" stop="111161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111991" g_stop="111461" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E575293" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111991" e_stop="111461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGCTACTGCTTGTATATGAATACATGCCTAATGGCAGTCTAGATATGCACCTCTTTGCGGGCCCAGATAAAGAGCCGCTGAGCTGGCACGTCCGCTACAAGATTGTGCAAGGTGTGGCCTCAGCATTACATTATCTGCACAATGAGTATGAGCAGAGGGTGGTCCATCGCGACCTGAAGGCGAGTAACATCATGCTTGACTCAAAGTTCAATGCGCGCCTTGGGGACTTTGGCCTTGCGCGAGCACTTGACAACGAAAGGACCTCGTATGCTGAGGCAGAAGGAGTGCTTGGTACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTATTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGATTAATGGCTTTCAATTCTTTGTTGATTGGGTTTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGAT-CCAAGGC-TTGG-AGATGACTATGTTGC-TGATGAAGCAAA</genome_strand>
        <mrna_strand>TGGAAAGTTACTGCTTGTATATGAATACATGCCTAATGGCAGTCTAGATATGCACCTCTTTGCGGGCCTAGATAAAGAGCCGTTGAGCTGGAACGTCCGCTACAAGATTGTGCAAGGTGTTGCCTCAGCATTGCACTATCTGCACAATGAGTATGAGCAGAGGGTGGTCCATCGCGACCTGAAGGCGAGTAACATCATGCTTGACTCAAAGTTCAATGCGCGCCTTGGGGACTTTGGCCTTGCGCGGGCACTTGACAACGAAAGGACCTCGTATGCTGAGGCAGAAGGTGTGCTTGGCACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTGTTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGACTAATGGCTTTCAATTCTTTGTTGATTGGGTATGGTACTTGCACCGGGATGGCCGTATCTTGGAAGCTGTTGATCCCAAGGCTTTGGAAGGTGACTATGTTGCTTGATGAAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379256" ref_strand="+" ref_description="SGN-E379256 [TUS-3-E23]">
      <seq>caaaaacccccattttaacatatgatcttgatttgaaagaacatgtaaatcaagaatcatattttgggttttctgcatcaactgggactaactaccaactcaactgcgtattgagatggaacttaacagttgagtatttccctgaaaagaaaaatccttggttgaagattgttttaggtgttgggattcctgtagtgtctcttttgattcttggcgcggcgtgtttagggtattgttatcataagaaaaggattgataggtcacagtctaacatattgggtgcactcaagagtttgcctggaactccacaagagtttcagttcaaggctttgaagaaagctacaaacaattttgatgaaaagaataagcttgggcaaggaggatatggagttgtttacagaggatttttagctggtgaggagaacaaagatattgctgtcaaatggttttctagggaaagcatcaaagggcaagatgatttcttggctgagcttactattatcaatcgtcttcgacataaacatcttgtcaaattgcttggatggtgtcacaagaatggaaagctactgcttgtatatgaatacatgcctaatggcagtctagatatgcacctctttgcgggcccagataaagagccgctgagctggcacgtccgctacaagattgtgcaaggtgtggcctcagcattacattatctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="114794" stop="111548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114494" g_stop="113955" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113954" i_stop="112008" i_length="1947">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112007" g_stop="111848" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="700" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E379256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114494" e_stop="113955"/>
          <exon e_start="112007" e_stop="111848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACCCCCATTTTAACATATGATCTTGATTTGAAAGAACATGTAAATCAAGAATCATATTTTGGGTTTTCTGCATCAACTGGGACTAACTACCAACTCAACTGCGTATTGAGATGGAACTTAACAGTTGAGTATTTCCCTGAAAAGAAAAATCCTTGGTTGAAGATTGTTTTAGGTGTTGGGATTCCTGTAGTGTCTCTTTTGATTCTTGGCGCGGCGTGTTTAGGGTATTGTTATCATAAGAAAAGGATTGATAGGTCACAGTCTAACATATTGGGTGCACTCAAGAGTTTGCCTGGAACTCCACAAGAGTTTCAGTTCAAGGCTTTGAAGAAAGCTACAAACAATTTTGATGAAAAGAATAAGCTTGGGCAAGGAGGATATGGAGTTGTTTACAGAGGATTTTTAGCTGGTGAGGAGAACAAAGATATTGCTGTCAAATGGTTTTCTAGGGAAAGCATCAAAGGGCAAGATGATTTCTTGGCTGAGCTTACTATTATCAATCGTCTTCGACATAAACATCTTGTCAAATTGCTTGGTAAGTGTTCTTAGTTTTTCTTCAAACATAGATTTTGTGCATTTGTTTGAGTAGAGTATTAGAGTTATATTGTGCATGTTTTGTTTATGATCTTTAATAACGTTAGGGAAATGGTACTGATAACTGATAAAGTTGATGTCATGTGATCCAAAGTTATTAAGACTCTTGTGATCCAATCTTTCTCAGTATAACTACAAGTTTTGAGTCTCAAATAAGGCCTTATCTCCAATATTTCAATTGAAAATTAAACAAATAGGGTAAAGATTAGTTTTTTTTGAGTATGTACATGAAATATGTGAATAACCTTTAAGGCAAAGGAAGTTTCAAATGTAGGGTAAATTTTGCTCAAAATTAGTTGCATTTTCTTGAATTCAGCAATCAGAAATAGAAATTGTCCTCTTATGTTTTTTGATTCTCAATGAAAGAGAGAATTTATTACCAGGATTCATTGATGTGACTTGAAATAATGGTGCCAAAAACCTTGTAAAAGTTGCTGACAATTTAAAGCCAAAGATTGGTGGGACATCAAATTTAATACTCCTTTTGTTTCAATTTATATGGCTTTTTTTCTTCTTTCTTTTTTTATTATAAAAAAGAATGATTTTTTACCTTTTTTATTTCAAACTCCATCTTTTCAACTTTATACGTAATATGTTTAAGAGACTAATATTATAGAATATTTTGTATTTGACATATTTTTTTACTTTAAAATCATAAAAATCTAAAATTCTCTTTATATCTTAAACTTCGTGTAAATCGACATATAAATTGAAACGGAAGGAATTTATGTGATCTGTTTTTCAGACTCTCCAGCAGTGTTGTTGCACATGCATTGGATTCTTTTTAGAAAAAAATACTTTTTTTTTAAGGATCTGATATGTATTCATCGACATTTTTAGAGAGTGAGCAACACTATTACAATAGACTCATTAAATGCATGAGGACATGCCCTTATCTTTTTATGCTTTTCTTTTCCTAGTAACTACTAGTAAGTGATCCATGATCTTACATGCTTCTTCAACTAATTTGTGTAATTTTGGCATGGTACTAGTCTTTCTAGTCTGACATTTAGCATGCTAGGAATTTACTAAGTTGGATCATCTTCTGACAAGCAAATTTCCTCTTTTGAAGAATCAAAGTTTTCTTGAACATTTATAATAACTTGGTCCTCCTTTTTGTCTTCAATCTCCTTTTCCATTCTTAGAATTCTCAAGTCATCCCAAGGATTTGTCTAAGTTTTTGTTACCTGACTAACTAGATTTGCGTCGCATAGGGTCTATCAAAGTGAGAAACACAATATATCAAGAGTGTCTCCAATTTTTTTTAATGTTTGAAGTCGAAACCTCTAGTTAATGAACCACACTCTACTACAGTAAATGTTTTAATAGTTGATGGTACGTAAGAGTTCAAGCCAAAAATATCAAGGAAGTTAGAAAAACTAATGGAATGCCTTAAAAGTTTTGACCAAGAACCAACTTGTTGCTATGGTCCCTCCAATTTAGAAGAACAAGGCACTATCTTGAAGTGCTTCATTTTGATTTGCTTAAAAGAAGATGATCATCCTTTGTTGACCATGGAATAAAGCAGCCATTCGTCAAAGTTCAATACAATTTTTTTATGTCAAAATTTTGTGAAGCTTCCTTCTTGTCCTAACATCCCTTTCATTCATTGTCAATGATTAACACAAGTTTTGGATGTTAGTTGAATGATGATAAATTAAATCCAATGAAAAGGACATTAATTCTGTATTTTAGTATACATTCATATCTTCAAACACCTAATCTTTGTGTCACCTACTCTTGTCATCTGGCCCTACAAAGAGATAAGGTTTGTAAAATACAACAAAAAGTTGACAATTTGGGTAGTGTGCAACTTCTGTATCTAGTTATTTTTACTGATTAAAAAACAAACATAAGCATCTTACAAGATTGCATGTTATGGTGACAGGATGGTGTCACAAGAATGGAAAGCTACTGCTTGTATATGAATACATGCCTAATGGCAGTCTAGATATGCACCTCTTTGCGGGCCCAGATAAAGAGCCGCTGAGCTGGCACGTCCGCTACAAGATTGTGCAAGGTGTGGCCTCAGCATTACATTATCTGCA</genome_strand>
        <mrna_strand>CAAAAACCCCCATTTTAACATATGATCTTGATTTGAAAGAACATGTAAATCAAGAATCATATTTTGGGTTTTCTGCATCAACTGGGACTAACTACCAACTCAACTGCGTATTGAGATGGAACTTAACAGTTGAGTATTTCCCTGAAAAGAAAAATCCTTGGTTGAAGATTGTTTTAGGTGTTGGGATTCCTGTAGTGTCTCTTTTGATTCTTGGCGCGGCGTGTTTAGGGTATTGTTATCATAAGAAAAGGATTGATAGGTCACAGTCTAACATATTGGGTGCACTCAAGAGTTTGCCTGGAACTCCACAAGAGTTTCAGTTCAAGGCTTTGAAGAAAGCTACAAACAATTTTGATGAAAAGAATAAGCTTGGGCAAGGAGGATATGGAGTTGTTTACAGAGGATTTTTAGCTGGTGAGGAGAACAAAGATATTGCTGTCAAATGGTTTTCTAGGGAAAGCATCAAAGGGCAAGATGATTTCTTGGCTGAGCTTACTATTATCAATCGTCTTCGACATAAACATCTTGTCAAATTGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGTCACAAGAATGGAAAGCTACTGCTTGTATATGAATACATGCCTAATGGCAGTCTAGATATGCACCTCTTTGCGGGCCCAGATAAAGAGCCGCTGAGCTGGCACGTCCGCTACAAGATTGTGCAAGGTGTGGCCTCAGCATTACATTATCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211141" ref_strand="+" ref_description="SGN-E211141 [cLEC-69-P20]">
      <seq>tcaaacaaatgcacaaaatctatgtttgaagaaaaactaagaacacttaccaagcaatttgacaagatgtttatgtcgaagacgattgataatagtaagctcagccaagaaatcatcttgccctttgatgctttccctagaaaaccatttgacagcaatatctttgttctcctcaccagctaaaaatcctctgtaaacaactccatatcctccttgcccaagcttattcttttcatcaaaattgtttgtagctttcttcaaagccttgaactgaaactcttgtggagttccaggcaaactcttgagtgcacccaatatgttagactgtgacctatcaatccttttcttatgataacaataccctaaacacgccgcgccaagaatcaaaagagacactacaggaatcccaacacctaaaacaatcttcaaccaaggatttttcttttcagggaaatactcaactgttaagttccatctcaatacgcagttgagttggtagttagtcccagttgatgcagaaaacccaaaatatgattcttgatttacatgttctttcaaatcaagatcatatgttaaaatgggggtttttggtataggtggggtagacccatttttcagtgcttgttcaacaatataaacatcaagaactttcttgattccatcatactgtacccaaacattatagaatcttgcaccaatanggagcagttctataccatggggtgtttaagattcgacctttacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="113605" stop="114951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113905" g_stop="114651" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E211141" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113905" e_stop="114651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACAAATGCACAAAATCTATGTTTGAAGAAAAACTAAGAACACTTACCAAGCAATTTGACAAGATGTTTATGTCGAAGACGATTGATAATAGTAAGCTCAGCCAAGAAATCATCTTGCCCTTTGATGCTTTCCCTAGAAAACCATTTGACAGCAATATCTTTGTTCTCCTCACCAGCTAAAAATCCTCTGTAAACAACTCCATATCCTCCTTGCCCAAGCTTATTCTTTTCATCAAAATTGTTTGTAGCTTTCTTCAAAGCCTTGAACTGAAACTCTTGTGGAGTTCCAGGCAAACTCTTGAGTGCACCCAATATGTTAGACTGTGACCTATCAATCCTTTTCTTATGATAACAATACCCTAAACACGCCGCGCCAAGAATCAAAAGAGACACTACAGGAATCCCAACACCTAAAACAATCTTCAACCAAGGATTTTTCTTTTCAGGGAAATACTCAACTGTTAAGTTCCATCTCAATACGCAGTTGAGTTGGTAGTTAGTCCCAGTTGATGCAGAAAACCCAAAATATGATTCTTGATTTACATGTTCTTTCAAATCAAGATCATATGTTAAAATGGGGGTTTTTGGTATAGGTGGGGTAGACCCATTTTTCAGTGCTTGTTCAACAATATAAACATCAAGAACTTTCTTGATTCCATCATACTGTACCCAAACATTATAGAATCTTGCACCAATA-GGAGCAAGTTCTATACCATGGGGTGTTAAAGATTCGACCTTTACAGA</genome_strand>
        <mrna_strand>TCAAACAAATGCACAAAATCTATGTTTGAAGAAAAACTAAGAACACTTACCAAGCAATTTGACAAGATGTTTATGTCGAAGACGATTGATAATAGTAAGCTCAGCCAAGAAATCATCTTGCCCTTTGATGCTTTCCCTAGAAAACCATTTGACAGCAATATCTTTGTTCTCCTCACCAGCTAAAAATCCTCTGTAAACAACTCCATATCCTCCTTGCCCAAGCTTATTCTTTTCATCAAAATTGTTTGTAGCTTTCTTCAAAGCCTTGAACTGAAACTCTTGTGGAGTTCCAGGCAAACTCTTGAGTGCACCCAATATGTTAGACTGTGACCTATCAATCCTTTTCTTATGATAACAATACCCTAAACACGCCGCGCCAAGAATCAAAAGAGACACTACAGGAATCCCAACACCTAAAACAATCTTCAACCAAGGATTTTTCTTTTCAGGGAAATACTCAACTGTTAAGTTCCATCTCAATACGCAGTTGAGTTGGTAGTTAGTCCCAGTTGATGCAGAAAACCCAAAATATGATTCTTGATTTACATGTTCTTTCAAATCAAGATCATATGTTAAAATGGGGGTTTTTGGTATAGGTGGGGTAGACCCATTTTTCAGTGCTTGTTCAACAATATAAACATCAAGAACTTTCTTGATTCCATCATACTGTACCCAAACATTATAGAATCTTGCACCAATANGGAGC-AGTTCTATACCATGGGGTGTTTAAGATTCGACCTTTACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207595" ref_strand="+" ref_description="SGN-E207595 [cLEC-32-O23]">
      <seq>caaaaacccccattttaacatatgatcttgtttctaatgaacatgttaatcaagaatcatattttggggttgctggattaactgggactaactaccaactcaactgcgcattgagatggaacttaacagttgagtatttccctgaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="114794" stop="114041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114494" g_stop="114341" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E207595" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114494" e_stop="114341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACCCCCATTTTAACATATGATCTTGATTTGAAAGAACATGTAAATCAAGAATCATATTTTGGGTTTTCTGCATCAACTGGGACTAACTACCAACTCAACTGCGTATTGAGATGGAACTTAACAGTTGAGTATTTCCCTGAAAAGAAAAA</genome_strand>
        <mrna_strand>CAAAAACCCCCATTTTAACATATGATCTTGTTTCTAATGAACATGTTAATCAAGAATCATATTTTGGGGTTGCTGGATTAACTGGGACTAACTACCAACTCAACTGCGCATTGAGATGGAACTTAACAGTTGAGTATTTCCCTGAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612010" ref_strand="+" ref_description="SGN-E612010 [61768]">
      <seq>ctttgctgtaaagctccgagaggttgcctccgccgatttgcacagagaattcatccgccacattgacagccgttcaattttgggcaagaaaaggagatcaattatagagatatgcaagaccagagaggactggaggaagcttcagctcctaaattgcggaaaaagaaaacatcacaaccaaaggctccagtgttgcaaaaagaagggaataagacaaaaaggatgcaagatgtgcgtgcaatgccaattcaaaatgggttaacacccaccaaaagagtcccaccaaacgaagtttccccattattccaatatgctgagaaatcaacacctgaattctcgccagatgcttccacttctggaaaagaatatcgaggattaaggagaaagtatctattgctggaagaagaaagttttggtcttaataaagaattgagagaagccgaagatgagatcaaggcccttgaagacgagaagctaacactccttgatgatcttgtngtgttagaaggcctggtttgatccttcagatattcaatcccaaggccagcgattatgatggtttattcaaaatctgtttttcagtaaactggggatatatacagaattgtgtacaacaaatccaagcttctgttagcataaagttgagattgtaacgatgcattattattacatcgactggttatttattgcacaaaaaagggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="126892" stop="131191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127192" g_stop="127276" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127277" i_stop="129310" i_length="2034">
            <donor d_prob="0.312" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129311" g_stop="129322" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="96" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129323" i_stop="130296" i_length="974">
            <donor d_prob="0.308" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130297" g_stop="130902" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="705" r_length="609" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E612010" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127192" e_stop="127276"/>
          <exon e_start="129311" e_stop="129322"/>
          <exon e_start="130297" e_stop="130902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTGTAAAGCTCAGAGAAGTTGCCTCCGCCGATTTGCACAGAGAATTCAGCCGCCAAATTGACAGCCGTTCAATTTTGCCGGTAAATTTTGGGGCAAGAAAAGGAGGTGATTTTTATAATCTAGGTCTAATTGCTTAATGTTAAAATCATAAATATTCTATTACTGATGTGTTCATAGGTCCAGGGTTTATTTACGCAGTTGAATTTCATCTTCTTCGTTTACTATAATTTAAGAGGATTATTATTAGAGTTTGAACTCGATTTAGCTTTATGAAGTCTGAAAGATTTCATCTTTTTCCCCATTCAATGAATATGACTATGACTTGATGATTTAGCTATTGTTAATCAGGAATTTGTTAGGTTGCCTTTTTCCTAAGTCCAATTTATGTTACTCTGGTTTCGAGTTTTGCCTGGATATGGAGGGCAAGAAGGAACACTAGTCTGCTGTGTTTTGATTATCCTGGTAAAATATGATAAGCATCTGCTAAGCTTCCCAGATTAGGGATGAATTGGTTAAGGATTATTATAAAGGTTTTCTAATTTAATATATTTGTGATGAATAAGCGTGTTTTAGAAACGTTTGTGTCAAAGTAATGATGGCTATTGGAGGAAGAAGATTGATTGCTAATGTTTTCTTCAAAAAAAATGGAGAGAAATTACTTAAATAGCGGCAATGGTTCTTCCATACAAAAGAATGGATGTATCATGTGTGAAATGTATTCTTAATTAGAATACATGTATTCGGTGCTTGTGTTGTTCCAACTCTTCAGATATATAACTATTGGGGTTTAAATTTTCTAAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGCTGAAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAACGTGAAAAAGGGAAAAATGGAAGAGAGAAATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGCACAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAGCTGTTTTGAGTATTGCCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAAGCTCTAAGTCTCTGTCTAGCTTCGAAACCTTAGAGTTCAATTCCTTTTTTTTTTCTTTTGAGGACAAGGGAAATCCGCAGCCGCTACCCTTTGGGTGCGCACTGGGTAAAATCCCGCTCCTATTCAATAGCTCGCAAACCACAGAGGTAACCCGCACTAGATAAGCCTGGTGCGACGAGCTCGACCCAGAAGGAAAACCCCTTGCTTTCGCTGGTAAGGGGTTTCGAACTTGAGACCTCCAACATGGAGGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTAACCAAGCTCAATTCCTTTTTGGTTTTTGATTTTTGTAATCTGGAGTCATTCAAGGCTAAGTTTGCACAAAAAAATTGAAGTCGTTTCTTTGAAATGTTTGCTGTTCAGACTGTGAAATGTTTTCTTAGATTTGTTAAATTTGAGTAGAGAGCTTGTGAAAAGGACAATGTCTTTGGAGGAGATTTCCTTGTAAAATGACCATTCAATTTCGTTAATCCCCCACTAGACTCTAGAGACAGTTTGGTCAAAGATTGACTTTAACTTGCAGTGTTGTTAATGTAGGCTCATTCAATTTGGAACTTTGAAGCCTTCAAGTCTGGCATTGTAAGCAATTCTAGTCTTTGGATTGACAAATGAATTTTCCTTGCTCAACTTTGAGAATACTAAAACCTGTGTCTATTGTAGTTTGACTTTGAATGCAGAACATTGACTTTCTTATCACGAAGATTTCACTGAAATTACTGATGGAAAGGATCTAATTGAAACATCCCTCCATTATTGACTCAATACTTATTTACTCAAATCATAATAGGTCATTGTTTTTAAGTAAACAAAGGGATATATCTGTTAAATTTCGAAGGATATTAGTTGCTTGGACGTAGGAATCATATGACTTTGTGGATGTTTTAGTAAGAAACTGTGGTAACCTATGGAACCTATCTTCTTTTCTACATCCAATCCCCTAAATATGATAATAGTGGTGTGAAATATCAACTCTAATGACTTACAAATTTACTTGTAATTCTTTTGTCCTATGTTCTTCTGGTTATGTTAGGAGACTTATTGTTTGGCTGGGCATCATAAGGCCCATCATTTTGATGGTCATACATTAAGTGTTATTCTTTGAGTCTAAAGTCAAAACTGCCAATACCAGCCAAAATTGATGATAAGATATTCTTGTTAGAAAAAAAGCCTCAAAAACAGTCACCTTGGTATAGTGCTCTCATCTTGAATTAGAGTATAATGTAATCGTTTTGCTTAATTAGAACTGTAAAATGTATGGAGAAGGTAGAACAAATGAAGGTCAAAGCTTTTGACAAGGACAGAGATTCTTCACCATGACCCTCTATCCAGTCTTTCAAATCGTTTTATAGAATGGGAAAAAACTGATGTTTTTGGTGTCCAATTTAGTTTAAAATAAATTATGTGCCATGCTATGTCGGTGCTCTGTATATTGAGTTGTCTGGAACAGTATTCTCTATATTATTCAGTGGGTTCTTGTTGATAGAACTCATCTTTTCCCTCTATATTTTCCTTGAGAGTGTTAAGAAATTGATAATGTTGGTAAGTGGTTTTCATGTTACCTGGGACTCATACTTTACAGTAGTAATCTGACGTTTTTATTAATTCCTGAGTGGATCCTCTCCCGCTGCCCCACCAACACCCCAAAGATATTGTGGATGATGATCAGAACATAATGGGATATTACCTTGGACTGCATGCATGAATTACCAATTATCTTTTCAGGGTTCTTTAGTTTTTATGTGTGAGATTGGTGAGAAAGATTGCATAAGTTAGAATCTAGAAGTTGGATTCTATTATTCTTGTGGATTATACAACTGTAGCTTTCTTTCAGACTCCAGCCTTTTGATATCAATAGCTGTTTATCCTTGTAGATCAATTTTAGAGATATGCAAGACCAGAGAGGACTTGAGGAAGCTTCAGCTCCTAAAATGCGGAAAAAGAAAACATCACAACCGAAGGCTACAGTATTGCAAAAAGAAGGGAATAAGGCAAAAAGGATACAAGATGTGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGG-TTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAA-TAATCCAA-CTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTA-TATAACATCGACTGATTGTTTATTGCACAATTACCAAACTG</genome_strand>
        <mrna_strand>CTTTGCTGTAAAGCTCCGAGAGGTTGCCTCCGCCGATTTGCACAGAGAATTCATCCGCCACATTGACAGCCGTTCAATTTTG-GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTATAGAGATATGCAAGACCAGAGAGGACTGGAGGAAGCTTCAGCTCCTAAATTGCGGAAAAAGAAAACATCACAACCAAAGGCTCCAGTGTTGCAAAAAGAAGGGAATAAGACAAAAAGGATGCAAGATGTGCGTGCAATGCCAATTCAAAATGGGTTAACACCCACCAAAAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATGCTTCCACTTCTGGAAAAGAATATCGAGGATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAGCCGAAGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTNGTGTTAGAAGGCCTGGTTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTCAAAATCTG-TTTTTCAGTAAACTGGGGATATATACAGAATTGTGTACAACAAATCCAAGCTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATTATTACATCGACTGGTTATTTATTGCACAAAAAAGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612588" ref_strand="+" ref_description="SGN-E612588 [62352]">
      <seq>taaagctccgagaagttgcctccgccgatttgcacagagaattcatccgccacattgacagccgttcaattttgggcaagaaaaggagatcaattatagagatatgcaagaccagagaggactggaggaagcttcagctcctaaattgcggaaaaagaaaacatcacaaccaaaggctccagtgttgcaaaaagaagggaataaggcaaaaaggatgcaagatgtgcgtgcaatgccaattcaaaatgggttaacacccaccaaaagagtcccaccaaacgaagtttccccattattccaatatgctgagaaatcaacacctgaattctcgccagatgcttccacttctggaaaagaatatcgggcattaaggagaaagtatctattgctggaagaagaaagttttggtcttaataaagaattgagagaagccgaagatgagatcaaggcccttgaagacgagaagctaacactccttgatgatcttgttgtgttagaaggcctggttgatccttcagatattcaatcccatggccagcgattatgatggtttatttaacacatgtgttttcagtaaactggggatatatacagaattgtgtacaacaatccaacttctgttagcataaagttgagattgtaacgatgcattatataacgtcgactggtttttattgcacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="126900" stop="131198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127200" g_stop="127276" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127277" i_stop="129310" i_length="2034">
            <donor d_prob="0.312" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129311" g_stop="129322" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="88" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129323" i_stop="130296" i_length="974">
            <donor d_prob="0.308" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130297" g_stop="130898" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="689" r_length="601" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E612588" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127200" e_stop="127276"/>
          <exon e_start="129311" e_stop="129322"/>
          <exon e_start="130297" e_stop="130898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTCAGAGAAGTTGCCTCCGCCGATTTGCACAGAGAATTCAGCCGCCAAATTGACAGCCGTTCAATTTTGCCGGTAAATTTTGGGGCAAGAAAAGGAGGTGATTTTTATAATCTAGGTCTAATTGCTTAATGTTAAAATCATAAATATTCTATTACTGATGTGTTCATAGGTCCAGGGTTTATTTACGCAGTTGAATTTCATCTTCTTCGTTTACTATAATTTAAGAGGATTATTATTAGAGTTTGAACTCGATTTAGCTTTATGAAGTCTGAAAGATTTCATCTTTTTCCCCATTCAATGAATATGACTATGACTTGATGATTTAGCTATTGTTAATCAGGAATTTGTTAGGTTGCCTTTTTCCTAAGTCCAATTTATGTTACTCTGGTTTCGAGTTTTGCCTGGATATGGAGGGCAAGAAGGAACACTAGTCTGCTGTGTTTTGATTATCCTGGTAAAATATGATAAGCATCTGCTAAGCTTCCCAGATTAGGGATGAATTGGTTAAGGATTATTATAAAGGTTTTCTAATTTAATATATTTGTGATGAATAAGCGTGTTTTAGAAACGTTTGTGTCAAAGTAATGATGGCTATTGGAGGAAGAAGATTGATTGCTAATGTTTTCTTCAAAAAAAATGGAGAGAAATTACTTAAATAGCGGCAATGGTTCTTCCATACAAAAGAATGGATGTATCATGTGTGAAATGTATTCTTAATTAGAATACATGTATTCGGTGCTTGTGTTGTTCCAACTCTTCAGATATATAACTATTGGGGTTTAAATTTTCTAAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGCTGAAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAACGTGAAAAAGGGAAAAATGGAAGAGAGAAATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGCACAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAGCTGTTTTGAGTATTGCCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAAGCTCTAAGTCTCTGTCTAGCTTCGAAACCTTAGAGTTCAATTCCTTTTTTTTTTCTTTTGAGGACAAGGGAAATCCGCAGCCGCTACCCTTTGGGTGCGCACTGGGTAAAATCCCGCTCCTATTCAATAGCTCGCAAACCACAGAGGTAACCCGCACTAGATAAGCCTGGTGCGACGAGCTCGACCCAGAAGGAAAACCCCTTGCTTTCGCTGGTAAGGGGTTTCGAACTTGAGACCTCCAACATGGAGGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTAACCAAGCTCAATTCCTTTTTGGTTTTTGATTTTTGTAATCTGGAGTCATTCAAGGCTAAGTTTGCACAAAAAAATTGAAGTCGTTTCTTTGAAATGTTTGCTGTTCAGACTGTGAAATGTTTTCTTAGATTTGTTAAATTTGAGTAGAGAGCTTGTGAAAAGGACAATGTCTTTGGAGGAGATTTCCTTGTAAAATGACCATTCAATTTCGTTAATCCCCCACTAGACTCTAGAGACAGTTTGGTCAAAGATTGACTTTAACTTGCAGTGTTGTTAATGTAGGCTCATTCAATTTGGAACTTTGAAGCCTTCAAGTCTGGCATTGTAAGCAATTCTAGTCTTTGGATTGACAAATGAATTTTCCTTGCTCAACTTTGAGAATACTAAAACCTGTGTCTATTGTAGTTTGACTTTGAATGCAGAACATTGACTTTCTTATCACGAAGATTTCACTGAAATTACTGATGGAAAGGATCTAATTGAAACATCCCTCCATTATTGACTCAATACTTATTTACTCAAATCATAATAGGTCATTGTTTTTAAGTAAACAAAGGGATATATCTGTTAAATTTCGAAGGATATTAGTTGCTTGGACGTAGGAATCATATGACTTTGTGGATGTTTTAGTAAGAAACTGTGGTAACCTATGGAACCTATCTTCTTTTCTACATCCAATCCCCTAAATATGATAATAGTGGTGTGAAATATCAACTCTAATGACTTACAAATTTACTTGTAATTCTTTTGTCCTATGTTCTTCTGGTTATGTTAGGAGACTTATTGTTTGGCTGGGCATCATAAGGCCCATCATTTTGATGGTCATACATTAAGTGTTATTCTTTGAGTCTAAAGTCAAAACTGCCAATACCAGCCAAAATTGATGATAAGATATTCTTGTTAGAAAAAAAGCCTCAAAAACAGTCACCTTGGTATAGTGCTCTCATCTTGAATTAGAGTATAATGTAATCGTTTTGCTTAATTAGAACTGTAAAATGTATGGAGAAGGTAGAACAAATGAAGGTCAAAGCTTTTGACAAGGACAGAGATTCTTCACCATGACCCTCTATCCAGTCTTTCAAATCGTTTTATAGAATGGGAAAAAACTGATGTTTTTGGTGTCCAATTTAGTTTAAAATAAATTATGTGCCATGCTATGTCGGTGCTCTGTATATTGAGTTGTCTGGAACAGTATTCTCTATATTATTCAGTGGGTTCTTGTTGATAGAACTCATCTTTTCCCTCTATATTTTCCTTGAGAGTGTTAAGAAATTGATAATGTTGGTAAGTGGTTTTCATGTTACCTGGGACTCATACTTTACAGTAGTAATCTGACGTTTTTATTAATTCCTGAGTGGATCCTCTCCCGCTGCCCCACCAACACCCCAAAGATATTGTGGATGATGATCAGAACATAATGGGATATTACCTTGGACTGCATGCATGAATTACCAATTATCTTTTCAGGGTTCTTTAGTTTTTATGTGTGAGATTGGTGAGAAAGATTGCATAAGTTAGAATCTAGAAGTTGGATTCTATTATTCTTGTGGATTATACAACTGTAGCTTTCTTTCAGACTCCAGCCTTTTGATATCAATAGCTGTTTATCCTTGTAGATCAATTTTAGAGATATGCAAGACCAGAGAGGACTTGAGGAAGCTTCAGCTCCTAAAATGCGGAAAAAGAAAACATCACAACCGAAGGCTACAGTATTGCAAAAAGAAGGGAATAAGGCAAAAAGGATACAAGATGTGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACATCGACTGATTGTTTATTGCACAATTACCAA</genome_strand>
        <mrna_strand>TAAAGCTCCGAGAAGTTGCCTCCGCCGATTTGCACAGAGAATTCATCCGCCACATTGACAGCCGTTCAATTTTG-GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTATAGAGATATGCAAGACCAGAGAGGACTGGAGGAAGCTTCAGCTCCTAAATTGCGGAAAAAGAAAACATCACAACCAAAGGCTCCAGTGTTGCAAAAAGAAGGGAATAAGGCAAAAAGGATGCAAGATGTGCGTGCAATGCCAATTCAAAATGGGTTAACACCCACCAAAAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATGCTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAGCCGAAGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCATGGCCAGCGATTATGATGGTTTATTTAACACATGTGTTTTCAGTAAACTGGGGATATATACAGAATTGTGTACAACAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACGTCGACTGGTT-TTTATTGCACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593446" ref_strand="+" ref_description="SGN-E593446 [36676]">
      <seq>gaggttgcctccgccgatttgcacagagaattcatccgacacattgacagccgttcaattttgggcaagaaaaggagatcaattatagagatatgcaagaccagagaggactggaggaagcttcagctcctaaattgcggaaaaagaaaacatcacaaccaaaggctccagtgttgcaaaaagaagggaataagacaaaaaggatgcaagatgtgcgtgcaatgccaattcaaaatgggttaacacccaccaaaagagtcccaccaaacgaagtttccccattattccaatatgctgagaaatcaacacctgaattctcgccagatgcttccacttctggaaaagaatatcgaggattaaggagaaagtatctattgctggaagaagaaagttttggtcttaataaagaattgagagaagccgaagatgagatcaaggcccttgaagacgagaagctaacactccttgatgatcttgttgtgttagaaggcctggttgatccttcagcatattcaatcccaaggccagcgattatgatggtttattcaaaatctgtttttcagtaaactgcggatatatacagaattgtgtacaacaatccaacttctgttagcataaagttgagattgtaacgatgcattatattacatcgactggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="126911" stop="131178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127211" g_stop="127276" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127277" i_stop="129310" i_length="2034">
            <donor d_prob="0.312" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129311" g_stop="129322" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="77" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129323" i_stop="130296" i_length="974">
            <donor d_prob="0.308" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130297" g_stop="130879" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="660" r_length="583" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E593446" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127211" e_stop="127276"/>
          <exon e_start="129311" e_stop="129322"/>
          <exon e_start="130297" e_stop="130879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGCCTCCGCCGATTTGCACAGAGAATTCAGCCGCCAAATTGACAGCCGTTCAATTTTGCCGGTAAATTTTGGGGCAAGAAAAGGAGGTGATTTTTATAATCTAGGTCTAATTGCTTAATGTTAAAATCATAAATATTCTATTACTGATGTGTTCATAGGTCCAGGGTTTATTTACGCAGTTGAATTTCATCTTCTTCGTTTACTATAATTTAAGAGGATTATTATTAGAGTTTGAACTCGATTTAGCTTTATGAAGTCTGAAAGATTTCATCTTTTTCCCCATTCAATGAATATGACTATGACTTGATGATTTAGCTATTGTTAATCAGGAATTTGTTAGGTTGCCTTTTTCCTAAGTCCAATTTATGTTACTCTGGTTTCGAGTTTTGCCTGGATATGGAGGGCAAGAAGGAACACTAGTCTGCTGTGTTTTGATTATCCTGGTAAAATATGATAAGCATCTGCTAAGCTTCCCAGATTAGGGATGAATTGGTTAAGGATTATTATAAAGGTTTTCTAATTTAATATATTTGTGATGAATAAGCGTGTTTTAGAAACGTTTGTGTCAAAGTAATGATGGCTATTGGAGGAAGAAGATTGATTGCTAATGTTTTCTTCAAAAAAAATGGAGAGAAATTACTTAAATAGCGGCAATGGTTCTTCCATACAAAAGAATGGATGTATCATGTGTGAAATGTATTCTTAATTAGAATACATGTATTCGGTGCTTGTGTTGTTCCAACTCTTCAGATATATAACTATTGGGGTTTAAATTTTCTAAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGCTGAAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAACGTGAAAAAGGGAAAAATGGAAGAGAGAAATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGCACAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAGCTGTTTTGAGTATTGCCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAAGCTCTAAGTCTCTGTCTAGCTTCGAAACCTTAGAGTTCAATTCCTTTTTTTTTTCTTTTGAGGACAAGGGAAATCCGCAGCCGCTACCCTTTGGGTGCGCACTGGGTAAAATCCCGCTCCTATTCAATAGCTCGCAAACCACAGAGGTAACCCGCACTAGATAAGCCTGGTGCGACGAGCTCGACCCAGAAGGAAAACCCCTTGCTTTCGCTGGTAAGGGGTTTCGAACTTGAGACCTCCAACATGGAGGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTAACCAAGCTCAATTCCTTTTTGGTTTTTGATTTTTGTAATCTGGAGTCATTCAAGGCTAAGTTTGCACAAAAAAATTGAAGTCGTTTCTTTGAAATGTTTGCTGTTCAGACTGTGAAATGTTTTCTTAGATTTGTTAAATTTGAGTAGAGAGCTTGTGAAAAGGACAATGTCTTTGGAGGAGATTTCCTTGTAAAATGACCATTCAATTTCGTTAATCCCCCACTAGACTCTAGAGACAGTTTGGTCAAAGATTGACTTTAACTTGCAGTGTTGTTAATGTAGGCTCATTCAATTTGGAACTTTGAAGCCTTCAAGTCTGGCATTGTAAGCAATTCTAGTCTTTGGATTGACAAATGAATTTTCCTTGCTCAACTTTGAGAATACTAAAACCTGTGTCTATTGTAGTTTGACTTTGAATGCAGAACATTGACTTTCTTATCACGAAGATTTCACTGAAATTACTGATGGAAAGGATCTAATTGAAACATCCCTCCATTATTGACTCAATACTTATTTACTCAAATCATAATAGGTCATTGTTTTTAAGTAAACAAAGGGATATATCTGTTAAATTTCGAAGGATATTAGTTGCTTGGACGTAGGAATCATATGACTTTGTGGATGTTTTAGTAAGAAACTGTGGTAACCTATGGAACCTATCTTCTTTTCTACATCCAATCCCCTAAATATGATAATAGTGGTGTGAAATATCAACTCTAATGACTTACAAATTTACTTGTAATTCTTTTGTCCTATGTTCTTCTGGTTATGTTAGGAGACTTATTGTTTGGCTGGGCATCATAAGGCCCATCATTTTGATGGTCATACATTAAGTGTTATTCTTTGAGTCTAAAGTCAAAACTGCCAATACCAGCCAAAATTGATGATAAGATATTCTTGTTAGAAAAAAAGCCTCAAAAACAGTCACCTTGGTATAGTGCTCTCATCTTGAATTAGAGTATAATGTAATCGTTTTGCTTAATTAGAACTGTAAAATGTATGGAGAAGGTAGAACAAATGAAGGTCAAAGCTTTTGACAAGGACAGAGATTCTTCACCATGACCCTCTATCCAGTCTTTCAAATCGTTTTATAGAATGGGAAAAAACTGATGTTTTTGGTGTCCAATTTAGTTTAAAATAAATTATGTGCCATGCTATGTCGGTGCTCTGTATATTGAGTTGTCTGGAACAGTATTCTCTATATTATTCAGTGGGTTCTTGTTGATAGAACTCATCTTTTCCCTCTATATTTTCCTTGAGAGTGTTAAGAAATTGATAATGTTGGTAAGTGGTTTTCATGTTACCTGGGACTCATACTTTACAGTAGTAATCTGACGTTTTTATTAATTCCTGAGTGGATCCTCTCCCGCTGCCCCACCAACACCCCAAAGATATTGTGGATGATGATCAGAACATAATGGGATATTACCTTGGACTGCATGCATGAATTACCAATTATCTTTTCAGGGTTCTTTAGTTTTTATGTGTGAGATTGGTGAGAAAGATTGCATAAGTTAGAATCTAGAAGTTGGATTCTATTATTCTTGTGGATTATACAACTGTAGCTTTCTTTCAGACTCCAGCCTTTTGATATCAATAGCTGTTTATCCTTGTAGATCAATTTTAGAGATATGCAAGACCAGAGAGGACTTGAGGAAGCTTCAGCTCCTAAAATGCGGAAAAAGAAAACATCACAACCGAAGGCTACAGTATTGCAAAAAGAAGGGAATAAGGCAAAAAGGATACAAGATGTGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAG-ATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACATCGACTGATTG</genome_strand>
        <mrna_strand>GAGGTTGCCTCCGCCGATTTGCACAGAGAATTCATCCGACACATTGACAGCCGTTCAATTTTG-GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTATAGAGATATGCAAGACCAGAGAGGACTGGAGGAAGCTTCAGCTCCTAAATTGCGGAAAAAGAAAACATCACAACCAAAGGCTCCAGTGTTGCAAAAAGAAGGGAATAAGACAAAAAGGATGCAAGATGTGCGTGCAATGCCAATTCAAAATGGGTTAACACCCACCAAAAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATGCTTCCACTTCTGGAAAAGAATATCGAGGATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAGCCGAAGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGCATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTCAAAATCTG-TTTTTCAGTAAACTGCGGATATATACAGAATTGTGTACAACAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATTACATCGACTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606327" ref_strand="+" ref_description="SGN-E606327 [22268]">
      <seq>catccgccacattgacagccgttcaattttgggcaagaaaaggagatcaattatagagatatgcaagaccagagaggactggaggaagcttcagctcctaaattgcggaaaaagaaaacatcacaaccaaaggctccagtgttgcaaaaagaagggaataagacaaaaaggatgcaagatgtgcgtgcaatgccaattcaaaatgggttaacacccaccaaaagagtcccaccaaacgaagtttccccattattccaatatgctgagaaatcaacacctgaattctcgccagatgcttccacttctggaaaagaatatcgaggattaaggagaaagtatctattgctggaagaagaaagttttggtcttaataaagaattgagagaagccgaagatgagatcaaggcccttgaagacgagaagctaacactccttgatgatcttgttgtgttagaaggcctggttgatccttcagatattcaatcccaaggccagcgattatgatggtttattcaaaatctgtttttcagtaaactggggatatatacagaattgtgtacaagaatccaacttctgttagcataaagttgagattgtaacgatgcattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="126943" stop="131163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127243" g_stop="127276" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127277" i_stop="129310" i_length="2034">
            <donor d_prob="0.312" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129311" g_stop="129322" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="45" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129323" i_stop="130296" i_length="974">
            <donor d_prob="0.308" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130297" g_stop="130863" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="611" r_length="566" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E606327" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127243" e_stop="127276"/>
          <exon e_start="129311" e_stop="129322"/>
          <exon e_start="130297" e_stop="130863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCGCCAAATTGACAGCCGTTCAATTTTGCCGGTAAATTTTGGGGCAAGAAAAGGAGGTGATTTTTATAATCTAGGTCTAATTGCTTAATGTTAAAATCATAAATATTCTATTACTGATGTGTTCATAGGTCCAGGGTTTATTTACGCAGTTGAATTTCATCTTCTTCGTTTACTATAATTTAAGAGGATTATTATTAGAGTTTGAACTCGATTTAGCTTTATGAAGTCTGAAAGATTTCATCTTTTTCCCCATTCAATGAATATGACTATGACTTGATGATTTAGCTATTGTTAATCAGGAATTTGTTAGGTTGCCTTTTTCCTAAGTCCAATTTATGTTACTCTGGTTTCGAGTTTTGCCTGGATATGGAGGGCAAGAAGGAACACTAGTCTGCTGTGTTTTGATTATCCTGGTAAAATATGATAAGCATCTGCTAAGCTTCCCAGATTAGGGATGAATTGGTTAAGGATTATTATAAAGGTTTTCTAATTTAATATATTTGTGATGAATAAGCGTGTTTTAGAAACGTTTGTGTCAAAGTAATGATGGCTATTGGAGGAAGAAGATTGATTGCTAATGTTTTCTTCAAAAAAAATGGAGAGAAATTACTTAAATAGCGGCAATGGTTCTTCCATACAAAAGAATGGATGTATCATGTGTGAAATGTATTCTTAATTAGAATACATGTATTCGGTGCTTGTGTTGTTCCAACTCTTCAGATATATAACTATTGGGGTTTAAATTTTCTAAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGCTGAAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAACGTGAAAAAGGGAAAAATGGAAGAGAGAAATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGCACAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAACTTAAAATAAGCTGTTTTGAGTATTGCCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAAGCTCTAAGTCTCTGTCTAGCTTCGAAACCTTAGAGTTCAATTCCTTTTTTTTTTCTTTTGAGGACAAGGGAAATCCGCAGCCGCTACCCTTTGGGTGCGCACTGGGTAAAATCCCGCTCCTATTCAATAGCTCGCAAACCACAGAGGTAACCCGCACTAGATAAGCCTGGTGCGACGAGCTCGACCCAGAAGGAAAACCCCTTGCTTTCGCTGGTAAGGGGTTTCGAACTTGAGACCTCCAACATGGAGGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTAACCAAGCTCAATTCCTTTTTGGTTTTTGATTTTTGTAATCTGGAGTCATTCAAGGCTAAGTTTGCACAAAAAAATTGAAGTCGTTTCTTTGAAATGTTTGCTGTTCAGACTGTGAAATGTTTTCTTAGATTTGTTAAATTTGAGTAGAGAGCTTGTGAAAAGGACAATGTCTTTGGAGGAGATTTCCTTGTAAAATGACCATTCAATTTCGTTAATCCCCCACTAGACTCTAGAGACAGTTTGGTCAAAGATTGACTTTAACTTGCAGTGTTGTTAATGTAGGCTCATTCAATTTGGAACTTTGAAGCCTTCAAGTCTGGCATTGTAAGCAATTCTAGTCTTTGGATTGACAAATGAATTTTCCTTGCTCAACTTTGAGAATACTAAAACCTGTGTCTATTGTAGTTTGACTTTGAATGCAGAACATTGACTTTCTTATCACGAAGATTTCACTGAAATTACTGATGGAAAGGATCTAATTGAAACATCCCTCCATTATTGACTCAATACTTATTTACTCAAATCATAATAGGTCATTGTTTTTAAGTAAACAAAGGGATATATCTGTTAAATTTCGAAGGATATTAGTTGCTTGGACGTAGGAATCATATGACTTTGTGGATGTTTTAGTAAGAAACTGTGGTAACCTATGGAACCTATCTTCTTTTCTACATCCAATCCCCTAAATATGATAATAGTGGTGTGAAATATCAACTCTAATGACTTACAAATTTACTTGTAATTCTTTTGTCCTATGTTCTTCTGGTTATGTTAGGAGACTTATTGTTTGGCTGGGCATCATAAGGCCCATCATTTTGATGGTCATACATTAAGTGTTATTCTTTGAGTCTAAAGTCAAAACTGCCAATACCAGCCAAAATTGATGATAAGATATTCTTGTTAGAAAAAAAGCCTCAAAAACAGTCACCTTGGTATAGTGCTCTCATCTTGAATTAGAGTATAATGTAATCGTTTTGCTTAATTAGAACTGTAAAATGTATGGAGAAGGTAGAACAAATGAAGGTCAAAGCTTTTGACAAGGACAGAGATTCTTCACCATGACCCTCTATCCAGTCTTTCAAATCGTTTTATAGAATGGGAAAAAACTGATGTTTTTGGTGTCCAATTTAGTTTAAAATAAATTATGTGCCATGCTATGTCGGTGCTCTGTATATTGAGTTGTCTGGAACAGTATTCTCTATATTATTCAGTGGGTTCTTGTTGATAGAACTCATCTTTTCCCTCTATATTTTCCTTGAGAGTGTTAAGAAATTGATAATGTTGGTAAGTGGTTTTCATGTTACCTGGGACTCATACTTTACAGTAGTAATCTGACGTTTTTATTAATTCCTGAGTGGATCCTCTCCCGCTGCCCCACCAACACCCCAAAGATATTGTGGATGATGATCAGAACATAATGGGATATTACCTTGGACTGCATGCATGAATTACCAATTATCTTTTCAGGGTTCTTTAGTTTTTATGTGTGAGATTGGTGAGAAAGATTGCATAAGTTAGAATCTAGAAGTTGGATTCTATTATTCTTGTGGATTATACAACTGTAGCTTTCTTTCAGACTCCAGCCTTTTGATATCAATAGCTGTTTATCCTTGTAGATCAATTTTAGAGATATGCAAGACCAGAGAGGACTTGAGGAAGCTTCAGCTCCTAAAATGCGGAAAAAGAAAACATCACAACCGAAGGCTACAGTATTGCAAAAAGAAGGGAATAAGGCAAAAAGGATACAAGATGTGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATA</genome_strand>
        <mrna_strand>CATCCGCCACATTGACAGCCGTTCAATTTTG-GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATTATAGAGATATGCAAGACCAGAGAGGACTGGAGGAAGCTTCAGCTCCTAAATTGCGGAAAAAGAAAACATCACAACCAAAGGCTCCAGTGTTGCAAAAAGAAGGGAATAAGACAAAAAGGATGCAAGATGTGCGTGCAATGCCAATTCAAAATGGGTTAACACCCACCAAAAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATGCTTCCACTTCTGGAAAAGAATATCGAGGATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAGCCGAAGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTCAAAATCTG-TTTTTCAGTAAACTGGGGATATATACAGAATTGTGTACAAGAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541270" ref_strand="+" ref_description="SGN-E541270 [TUS-61-P16](-)">
      <seq>tgcatgcaatgccaattcaaaatgggttaaaacacaccaagagagtcccaccaaacgaagtttccccattattccaatatgctgagaaatcaacacctgaattctcgccagatacttccacttctggaaaagaatatcgggcattaaggagaaagtatctattgctggaagaagaaagttttggtcttaataaagaattgagagaaaccgatgatgagatcaaggcccttgaagacgagaagctaacactccttgatgatcttgttgtgttagaaggcctggttgatccttcagatattcaatcccaaggccagcgattatgatggtttatttataatgtgttttttcggtaaactggggatatatacagaattgtgtacaataatccaacttctgttagcataaagttgagattgtaacgatgccattatataacatcgactngattgtttattgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="130133" stop="131199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130433" g_stop="130899" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E541270" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130433" e_stop="130899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATG-CATTATATAACATCGACT-GATTGTTTATTGCACAATTACCAAA</genome_strand>
        <mrna_strand>TGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCCATTATATAACATCGACTNGATTGTTTATTGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548522" ref_strand="+" ref_description="SGN-E548522 [TUS-61-P16]">
      <seq>tgcatgcaatgccaattcaaaatgggttaaaacacaccaagagagtcccaccaaacgaagtttccccattattccaatatgctgagaaatcaacacctgaattctcgccagatacttccacttctggaaaagaatatcgggcattaaggagaaagtatctattgctggaagaagaaagttttggtcttaataaagaattgagagaaaccgatgatgagatcaaggcccttgaagacgagaagctaacactccttgatgatcttgttgtgttagaaggcctggttgatccttcagatattcaatcccaaggccagcgattatgatggtttatttataatgtgttttttcggtaaactggggatatatacagaattgtgtacaataatccaacttctgttagcataaagttgagattgtaacgatgcattatataacatcgactgattgtttattgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="130133" stop="131199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130433" g_stop="130899" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E548522" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130433" e_stop="130899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACATCGACTGATTGTTTATTGCACAATTACCAAA</genome_strand>
        <mrna_strand>TGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACATCGACTGATTGTTTATTGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295636" ref_strand="+" ref_description="SGN-E295636 [cLET-25-A16]">
      <seq>gcatgcaatgccaattcaaaatgggttaaaacacaccaagagagtcccaccaaacgaagtttccccattattccaatatgctgagaaatcaacacctgaattctcgccagatacttccacttctggaaaagaatatcgggcattaaggagaaagtatctattgctggaagaagaaagttttggtcttaataaagaattgagagaaaccgatgatgagatcaaggcccttgaagacgagaagctaacactccttgatgatcttgttgtgttagaaggcctggttgatccttcagatattgaatcccaaggccagcgattatgatgggttatttataatgggttttttcggtaaactggggatatatacagaattgtgtacaataatccaacttctgttagcataaagttgagattgtaacgatgcattatataacatcgactgattggttattgcagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="130134" stop="131198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130434" g_stop="130898" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E295636" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130434" e_stop="130898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACATCGACTGATTGTTTATTGCACAATTACCAA</genome_strand>
        <mrna_strand>GCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTGAATCCCAAGGCCAGCGATTATGATGGGTTATTTATAATGGGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACATCGACTGATTGGTTATTGCAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432859" ref_strand="+" ref_description="SGN-E432859 [STM-57-N1]">
      <seq>ttttttttttaataccaacatgataagatattccattaaaaaatgaactactagtacatatagaagcagagacagagagatgccaatccataatgcaattactagacaagtaaaagaatttgcagtatgcctatgagtaagctgactaggttgcaagaaccaaaactcaatactagggacaaacagaataaagaattactaattatttgtattctgctactaattacatgtattctactaagaattttgtgttggcttcatgcaaccattttcagcagctactgtgtgtaatatcttgttacttcccttatataacacaaataaatagcactgcagctgaactataccatggtacccatgttggaatgtgccactctgacaacaagtggagatgttacccatgttcttttgttcctccatgacaaggacccaaagacatatccctgtgtaggtgcagccactttgaaagtcacagtgaaattcatcttctggtaatatctagtgaaggctaatctttgcggcaccacagtaacattgataccctttggtgcaaatataactgccttgtaggtactccttgattttcccacatttgtgacagttcgagttactgagtatttgtttctgaggtttggtactgtgatggagggataatttagttcatttggcgatgcaaaggtttgatcacactttctgttgtcccttgtaattagatgcagagatttctcgtcataaccaattgaacaaagaaatgctctgtaatcttctggttgtgcatcatatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="130684" stop="132063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130980" g_stop="131763" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E432859" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130980" e_stop="131763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTTTATAATACCAACATGATAAGATATTCCATTAAAGAATGAACTACTAGTACATAT---AG-A-AG-CA-A-AGATGCCAATACATAATGCAATTACTAGACAAGTAAAAGAATTTGCAGTATCCCTATTAGTAAAACCTGACTAGGTAGCAAGAACCAAAACTCAAAACTAAAGGACAAATAGAATAAAGAATTACTAATTATTTGTATTCTGCTACTAATTACATGTATTCTTCTAAGAATTTTGTGTTGGCTTCTTCATGCAACCATTTTCAGCAGCTACTGGTTGCAATATCTTGTTACTTACCTTATATAACACAAATAAATAGCACTGCAGCTGAACTATACCACAGTACCCATATTGGAATGTGCCACTCTGACAACAAGTGGAGATGTTACCCATGTTCTTTTGTTCCTCCATGACAAGGACCCAAAGACATATCCCTGTGTAGGTGCAGCCACTTTGAAAGTCACTGTGAAATTCATCTTCTGGTAATATCTAGTGAAGGCTAATCTTCGCGGCACCACAGTAACATTGATACCCTTTGGTGCAAATATAACTGCCTTGTAAGTACTCCTTGACTTTCCCACATTTGTGACAGTTCGAGATACTGAGTAATTGTTTCTGAGGTTTGGTACTGTGATGGAGGGATAATTTAGTTCATTTGGCGATGCAAAGGTTTGATCACACGTTCTGTTGTCCCTTGTAATTAGATGCAGAGATTTCTCGTCATAACCAATTGAACAAAGAAATGCTCTGTAATCTTCTGGTTGTGCATCATATATC</genome_strand>
        <mrna_strand>TTTTTTTTTTAATACCAACATGATAAGATATTCCATTAAAAAATGAACTACTAGTACATATAGAAGCAGAGACAGAGAGATGCCAATCCATAATGCAATTACTAGACAAGTAAAAGAATTTGCAGTATGCCTATGAGT--AAGCTGACTAGGTTGCAAGAACCAAAACTCAATACT-AGGGACAAACAGAATAAAGAATTACTAATTATTTGTATTCTGCTACTAATTACATGTATTCTACTAAGAATTTTGTGTTGG---CTTCATGCAACCATTTTCAGCAGCTACTGTGTGTAATATCTTGTTACTTCCCTTATATAACACAAATAAATAGCACTGCAGCTGAACTATACCATGGTACCCATGTTGGAATGTGCCACTCTGACAACAAGTGGAGATGTTACCCATGTTCTTTTGTTCCTCCATGACAAGGACCCAAAGACATATCCCTGTGTAGGTGCAGCCACTTTGAAAGTCACAGTGAAATTCATCTTCTGGTAATATCTAGTGAAGGCTAATCTTTGCGGCACCACAGTAACATTGATACCCTTTGGTGCAAATATAACTGCCTTGTAGGTACTCCTTGATTTTCCCACATTTGTGACAGTTCGAGTTACTGAGTATTTGTTTCTGAGGTTTGGTACTGTGATGGAGGGATAATTTAGTTCATTTGGCGATGCAAAGGTTTGATCACACTTTCTGTTGTCCCTTGTAATTAGATGCAGAGATTTCTCGTCATAACCAATTGAACAAAGAAATGCTCTGTAATCTTCTGGTTGTGCATCATATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744759" ref_strand="+" ref_description="SGN-E744759 [GI|6688547]">
      <seq>gatcaaacctttgcatcgccaaatgaactaaattatccctccatcacagtaccaaacctcagaaacaattactcagtatctcgaactgtcacaaatgtgggaaagtcaaggagtacttacaaggcagttatatttgcaccaaagggtatcaatgttactgtggtgccgcgaagattagccttcactagatattaccagaagatgaatttcacagtgactttcaaagtggctgcacctacacagggatatgtctttgggtccttgtcatggaggaacaaaagaacatgggtaacatctccacttgttgtcagagcacattccaatatgggtactgtggtatagttcagctgcagtgcctatttatttgtgttatagacaggtaagtaacaagatattgcaaccagtagctgctgaaaatggttgcatgaagaagccaacacaaaattcttagaagaatacatgtaattagtagcagaatacaaataattagtaattctttattctatttgtcctttagttttgagttttggttcttgctacctagtcaggttttactaatagggatactgcaaattcttttacttgtctagtaattgcattatgtattggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="131963" stop="130752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131663" g_stop="131053" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="622"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E744759" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131663" e_stop="131053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGAGTGGCACATTCCAATATGGGTACTGTGGTATAGTTCAGCTGCAGTG-CTATTTATTTGTGTTATATA-AGGTAAGTAACAAGATATTGCAACCAGTAGCTGCTGAAAATGGTTGCATGAAGAAGCCAACACAAAATTCTTAGAAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTCTTTATTCTATTTGTCCTTTAGTTTTGAGTTTTGGTTCTTGCTACCTAGTCAGGTTTTACTAATAGGGATACTGCAAATTCTTTTACTTGTCTAGTAATTGCATTATGTATTGGC</genome_strand>
        <mrna_strand>GATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGA---GCACATTCCAATATGGGTACTGTGGTATAGTTCAGCTGCAGTGCCTATTTATTTGTGTTATAGACAGGTAAGTAACAAGATATTGCAACCAGTAGCTGCTGAAAATGGTTGCATGAAGAAGCCAACACAAAATTCTTAGAAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTCTTTATTCTATTTGTCCTTTAGTTTTGAGTTTTGGTTCTTGCTACCTAGTCAGGTTTTACTAATAGGGATACTGCAAATTCTTTTACTTGTCTAGTAATTGCATTATGTATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428334" ref_strand="-" ref_description="SGN-E428334 [STM-50-K19]">
      <seq>agaaacaaatactcagtaactcgaactgtcacaaatgtgggaaaatcaaggagtaattacaaggcagttatatttgcaccaaagggtatcaatgttactgtggtaccacgaagattagccttcactagatattaccagaagatgaatttcactgtgactttcaaagtggctgcacctacacagggatatgtctttgggtccttgtcatggaggaacaaaagaacatgggtaacatctccacttgttgtcagagtggcacattccaacatgggtaccatggtatagttcagctgcagtgctatttatttgtgttataaaagggaagtaacaagatattacacccagtagcggctgaaaatggttgcatgaagccaacacaaaattcttagtagaatacatgtaattagtagcagaatacaaataattagtaattatttattctatttgtccctagttttgagttttggttcttgcaacctagtcaaattactcataggcatactgcaaattcttttacttgtctagtaatcgcattgggatgtgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="131903" stop="130752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131603" g_stop="131068" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="555"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E428334" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428334" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131603" e_stop="131068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGAGTGGCACATTCCAATATGGGTACTGTGGTATAGTTCAGCTGCAGTGCTATTTATTTGTGTTATATAAGGTAAGTAACAAGATATTGCAACCAGTAGCTGCTGAAAATGGTTGCATGAAGAAGCCAACACAAAATTCTTAGAAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTCTTTATTCTATTTGTCCTTTAGTTTTGAGTTTTGGTTCTTGCTACCTAGTCAGGTTTTACTAATAGGGATACTGCAAATTCTTTTACTTGTCTAGTAATT</genome_strand>
        <mrna_strand>AGAAACAAATACTCAGTAACTCGAACTGTCACAAATGTGGGAAAATCAAGGAGTAATTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTACCACGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACTGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGAGTGGCACATTCCAACATGGGTACCATGGTATAGTTCAGCTGCAGTGCTATTTATTTGTGTTATAAAAGGGAAGTAACAAGATATTACACCCAGTAGCGGCTGAAAATGGTTGCAT---GAAGCCAACACAAAATTCTTAGTAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTATTTATTCTATTTGTCC-CTAGTTTTGAGTTTTGGTTCTTGCAACCTAGTCA--AATTACTCATAGGCATACTGCAAATTCTTTTACTTGTCTAGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420546" ref_strand="+" ref_description="SGN-E420546 [STM-31-K16]">
      <seq>caagtaaaagaatttgcagtatgcctatgagtaagctgactaggttgcaattaccaaaactcaatactagggacaaacagaataaagaattactaattatttgtattctgctactaattacatgtattctactaagaattttgtgttggcttcatgcaaccattttcagcagctactgtgtgtaatatcttgttacttcccttatataacacaaataaatagcactgcagctgaactataccatggtacccatgttggaatgtgccactctgacaacaagtggagatgttacccatgttcttttgttcctccatgacaaggacccaaagacatatccctgtgtaggtgcagccactttgaaagtcacagngaaattcatcttctggtaatatctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="130778" stop="131780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131078" g_stop="131480" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E420546" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131078" e_stop="131480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTAAAAGAATTTGCAGTATCCCTATTAGTAAAACCTGACTAGGTAGCAAGAACCAAAACTCAAAACTAAAGGACAAATAGAATAAAGAATTACTAATTATTTGTATTCTGCTACTAATTACATGTATTCTTCTAAGAATTTTGTGTTGGCTTCTTCATGCAACCATTTTCAGCAGCTACTGGTTGCAATATCTTGTTACTTACCTTATATAACACAAATAAATAGCACTGCAGCTGAACTATACCACAGTACCCATATTGGAATGTGCCACTCTGACAACAAGTGGAGATGTTACCCATGTTCTTTTGTTCCTCCATGACAAGGACCCAAAGACATATCCCTGTGTAGGTGCAGCCACTTTGAAAGTCACTGTGAAATTCATCTTCTGGTAATATCTAGT</genome_strand>
        <mrna_strand>CAAGTAAAAGAATTTGCAGTATGCCTATGAGT--AAGCTGACTAGGTTGCAATTACCAAAACTCAATACT-AGGGACAAACAGAATAAAGAATTACTAATTATTTGTATTCTGCTACTAATTACATGTATTCTACTAAGAATTTTGTGTTGG---CTTCATGCAACCATTTTCAGCAGCTACTGTGTGTAATATCTTGTTACTTCCCTTATATAACACAAATAAATAGCACTGCAGCTGAACTATACCATGGTACCCATGTTGGAATGTGCCACTCTGACAACAAGTGGAGATGTTACCCATGTTCTTTTGTTCCTCCATGACAAGGACCCAAAGACATATCCCTGTGTAGGTGCAGCCACTTTGAAAGTCACAGNGAAATTCATCTTCTGGTAATATCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428485" ref_strand="+" ref_description="SGN-E428485 [STM-50-M6]">
      <seq>tctgctactaattacatgtattctactaaggattttgtgttggcttctttcacccattttcagccgctactgtgtgtaatatcttgttacttcccttttataacacaaataaatagcactgcagctgaactataccatggtacccatgttggaatgtgccactctgacaacaagtggagatgttacccatgttcttttgttcctccatgacaaggacccaaagacatatccctgtgtaggtgcagtcactttgaaagtcacagtgaaattcatcttctggtaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="130887" stop="131777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131187" g_stop="131477" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E428485" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131187" e_stop="131477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTACTAATTACATGTATTCTTCTAAGAATTTTGTGTTGGCTTCTTCATGCAACCATTTTCAGCAGCTACTGGTTGCAATATCTTGTTACTTACCTTATATAACACAAATAAATAGCACTGCAGCTGAACTATACCACAGTACCCATATTGGAATGTGCCACTCTGACAACAAGTGGAGATGTTACCCATGTTCTTTTGTTCCTCCATGACAAGGACCCAAAGACATATCCCTGTGTAGGTGCAGCCACTTTGAAAGTCACTGTGAAATTCATCTTCTGGTAATATCT</genome_strand>
        <mrna_strand>TCTGCTACTAATTACATGTATTCTACTAAGGATTTTGTGTTGGCTTCTT--T-CACCCATTTTCAGCCGCTACTGTGTGTAATATCTTGTTACTTCCCTTTTATAACACAAATAAATAGCACTGCAGCTGAACTATACCATGGTACCCATGTTGGAATGTGCCACTCTGACAACAAGTGGAGATGTTACCCATGTTCTTTTGTTCCTCCATGACAAGGACCCAAAGACATATCCCTGTGTAGGTGCAGTCACTTTGAAAGTCACAGTGAAATTCATCTTCTGGTAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274682" ref_strand="+" ref_description="SGN-E274682 [cLEN-13-I4]">
      <seq>agcctgatattactgctcccggtttaaatatcctggcagcatggtccccagcaatgtctaggttgaagttcaacatactctctggaacctccatggcttgccctcacatatcaggagttgttgccttgttaaaagccgtgcatccatcatggtctccctctgcaatcaaatcagccatcatgacaacagccaaactatcagatatgcatcacaaacccataatagtagatcctgaagggaagaaggctaatccatttgattttggttctggatttgttaaccccacgaaagtcctcaatcctggtctgatatatgatgcacaaccagaagattacagagcatttctttgttcaattggttatgacgagaaatctctgcatctaattacaagggacaacagaacgtgtgatcaaacctttgcatcgccaaatgaactaaattatccctccatcacagtaccaaacctcagaaacaattactcagtatctcgaactgtcacaaatgtgggaaagtcaaggagtacttacaaggcagttatatttgcaccaaagggtatcaatgttactgtggtgccgcgaagattagccttcactagatattaccagaagatgaatttcacagtgactttcaaagtggctgcacctacacagggatatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="132579" stop="131110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132279" g_stop="132091" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131881" g_stop="131410" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="661" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E274682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132279" e_stop="132091"/>
          <exon e_start="131881" e_stop="131410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTT</genome_strand>
        <mrna_strand>AGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273399" ref_strand="+" ref_description="SGN-E273399 [cLEN-3-N6]">
      <seq>gagctcaacctgctcctcgagtaacagcattttcttcaagaggtcctaattctctaacaccagaaattttgaagcctgatattactgctcccggtttaaatatcctggcagcatggtccccagcaatgtctaggttgaagttcaacatactctctggaacctccatggcttgccctcacatatcaggagttgttgccttgttaaaagccgtgcatccatcatggtctccctctgcaatcaaatcagccatcatgacaacagccaaactatcagatatgcatcacaaacccataatagtagatcctgaagggaagaaggctaatccatttgattttggttctggatttgttaaccccacgaaagtcctcaatcctggtctgatatatgatgcacaaccagaagattacagagcatttctttgttcaattggttatgacgagaaatctctgcatctaattacaagggacaacagaacgtgtgatcaaacctttgcatcgccaaatgaactaaattatccctccatcacagtaccaaacctcagaaacaattactcagtatctcgaactgtcacaaatgtgggaaagtcaaggagtacttacaaggcagttatatttgcaccaaagggtttaaatgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="132899" stop="131205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132599" g_stop="132526" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132277" g_stop="132091" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="261" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131881" g_stop="131505" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="638" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E273399" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132599" e_stop="132526"/>
          <exon e_start="132277" e_stop="132091"/>
          <exon e_start="131881" e_stop="131505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACT</genome_strand>
        <mrna_strand>GAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTTTAAATGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237676" ref_strand="+" ref_description="SGN-E237676 [cLED-19-M10]">
      <seq>acatatcaggagttgttgccttgttaaaagccgtgcatccatcatggtctccctctgcaatcaaatcagccatcatgacaacagccaaactatcagatatgcatcacaaacccataatagtagatcctgaagggaagaaggctaatccatttgattttggttctggatttgttaaccccacgaaagtcctcaatcctggtctgatatatgatgcacaaccagaagattacagagcatttctttgttcaattggttatgacgagaaatctctgcatctaattacaagggacaacagaacgtgtgatcaaacctttgcatcgccaaatgaactaaattatccctccatcacagtaccaaacctcagaaacaattactcagtatctcgaactgtcacaaatgtgggaaagtcaaggagtacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="132474" stop="131244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132174" g_stop="132091" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131881" g_stop="131544" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="422" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E237676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132174" e_stop="132091"/>
          <exon e_start="131881" e_stop="131544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTAC</genome_strand>
        <mrna_strand>ACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607168" ref_strand="+" ref_description="SGN-E607168 [23127]">
      <seq>aaaactgttttgggagctcaacggctcctcgagtacagcattttcttcaagaggtcctaattctctaacaccagaaattttgaagcctgatattactgctccgggattaaatatcctggcagcatggtccccagcaatgtctaatttgaacttcaacatactctctggaacttccatggcttgccctcacatatcaggagttgttgccttgttaaaagccgtgcatccatcatggtctccctctgcaatcaaatcagccatcatgacaacagccaaactatcagatatgcatcacaaacccataatagtagatcctgaagggaagagagctaatccatttgattttggttctggattcgttaaccccacgaaagtcctggatcctggtctgatatatgatgcacaaccagcagattacagagcatttctttgttcaattggttatgacgagaaatctctgcatctaattacaagggacaacagaacgtgtgatcaaacctttgcatcgccaaatgaactaaaattatcccctccatccacagtacccagaacctcagaaaccaaaatactcagtaaactcgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="132912" stop="131296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132612" g_stop="132526" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132277" g_stop="132091" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="272" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131881" g_stop="131619" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="537" r_length="265" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E607168" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132612" e_stop="132526"/>
          <exon e_start="132277" e_stop="132091"/>
          <exon e_start="131881" e_stop="131619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACT-AAATTAT-CCCTCCATC</genome_strand>
        <mrna_strand>AAAACTGTTTTGGGAGCTCAA-CGGCTCCTCGAGT-ACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCGGGATTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAATTTGAACTTCAACATACTCTCTGGAACTTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAGAGCTAATCCATTTGATTTTGGTTCTGGATTCGTTAACCCCACGAAAGTCCTGGATCCTGGTCTGATATATGATGCACAACCAGCAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAAATTATCCCCTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244877" ref_strand="+" ref_description="SGN-E244877 [cLEF-2-L9]">
      <seq>aacaccagattttttgaagcctgatattactgctcccgggggaaatatcctggcagcatggtgcccagcaatgtctaggttgaagttcaacatactctctggaacctccatggcttgccctcacatatcaagagttgttgccttgttaaaagccgtgcatccatcatggtctccctctgcaatcaaatcagccatcatgacaacagccaaactatcagatatgcatcacaaacccataatagtagatcctgaagggaagaaggctaatccattagattttggttctggatttggtaaccccacgaaagtcctcaatcctggtctgatatatgatgcacaaccagaagattacagagcatttctttgttcaattgggtatgacgagaaatctctggatctaattacaagggacaacaggaacgtgtgatcaaacctttgcatcgccaaatgaactaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="132587" stop="131329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132544" g_stop="132526" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132277" g_stop="132091" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="206" r_length="187" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131881" g_stop="131629" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="460" r_length="254" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E244877" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132544" e_stop="132526"/>
          <exon e_start="132277" e_stop="132091"/>
          <exon e_start="131881" e_stop="131629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACA-GAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTA</genome_strand>
        <mrna_strand>AACACCAGATTTTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCCGGGGGAAATATCCTGGCAGCATGGTGCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAAGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTAGATTTTGGTTCTGGATTTGGTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGGTATGACGAGAAATCTCTGGATCTAATTACAAGGGACAACAGGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244875" ref_strand="+" ref_description="SGN-E244875 [cLEF-2-L5]">
      <seq>aacaccagaaattttgaagcctgatattactgctcccggtttaaatatcctggcagcatggtccccagcaatgtctaagttgaagttcaacatactctctggaacctccatggcttgccctcacatatcaagagttgttgccttgttaaaagccgtgcatccatcatggtctccctctgcaatcaaatcagccattatgacaacagccaaactatcagatatgcatcacaaacccataatagtagatcctgaagggaagaacgctaatccatttgatttaggatctggatttgttaaccccacgaaagtcctcaatcctggtctgatatatgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="132583" stop="131451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132544" g_stop="132526" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132277" g_stop="132091" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="206" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131881" g_stop="131751" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="337" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E244875" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132544" e_stop="132526"/>
          <exon e_start="132277" e_stop="132091"/>
          <exon e_start="131881" e_stop="131751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCA</genome_strand>
        <mrna_strand>AACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAAGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAAGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATTATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAACGCTAATCCATTTGATTTAGGATCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479634" ref_strand="+" ref_description="SGN-E479634 [cSTD-10-B4]">
      <seq>ctttttgggtgactagtcttagcttatctcaaatgaatacatctgcaaggatcatacctgcttctgaagcttatgctggatacttcactccctatcaatccagttattgcttagatagttctttgaatagaactaaggccaaagggaaggttcttgtgtgtcgacatgctggaagctcaagtgagtcaaagctggagaaaagcaatatagttaaacaagctggtggggttgggatgatccttattgatgaagcagacaagggtgtggctatccctttcaccattccagcagcaactgttgggaaaaggattggaaacaagaatcctagcttacattaataatacacggttcacttccttcttagtggctgttgatgtttgttttatttttctttgatattattagcaatcatctcatcttttttatattaacagcctccctacggcaaggattctctctgctaaaactgttttgggagctcaacctgctcctcgagtaacagcattttcttcaagaggtcctaattctctaacaccagaaattttgaagcctgatattactgctccgggattaaatatcctggcagcatggtccccagcaatgtctaatttgaacttcaacatactctctggaacttccatggcttgccctcacatatcangagttgttgccttgttaaaagccgtgcatccatcatggtctccctctgcaatcaaatcagccatcatgacaacagccaaactatcagatatgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133454" stop="131561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133160" g_stop="133066" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="103" r_length="96" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133065" i_stop="132972" i_length="94">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132971" g_stop="132526" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="549" r_length="446" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132277" g_stop="132091" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="736" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131881" g_stop="131861" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="757" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E479634" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133160" e_stop="133066"/>
          <exon e_start="132971" e_stop="132526"/>
          <exon e_start="132277" e_stop="132091"/>
          <exon e_start="131881" e_stop="131861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGA-AAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAG-ATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCATC</genome_strand>
        <mrna_strand>GGTGACTAGTCTTAGCTTATCTCAAATGAATACATCTGCAAGGATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCCTATCAATCCAG..............................................................................................TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGGGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATCCCTTTCACCATTCCAGCAGCAACTGTTGGGAAAAGGATTGGAAACAAGAATCCTAGCTTACATTAATAATACACGGTTCACTTCCTTCTTAGTGGCTGTTGATGTTTG-TTTTATTTTTCTTTGATATTATTAGCAATCATCTCATCTTTTTTATATTAACAGCCTCCCTACGGCAAGGATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCGGGATTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAATTTGAACTTCAACATACTCTCTGGAACTTCCATGGCTTGCCCTCACATATCANGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420545" ref_strand="+" ref_description="SGN-E420545 [STM-31-K16]">
      <seq>tgaaagtcttagcttatatcaaatgaatacatctgcaagaatcatacctgcttctgaagcttatgctggatacttcactccctatcaatccaggtgaagcagaagttattgcttagatagttctttgaatagaactaaggccaaagggaaggttcttgtgtgtcgacatgctggaagctcaagtgagtcaaagctggagaaaagcaatatagttaaacaagctggtggagttgggatgatccttattgatgaagcagacaagggtgtggctatccccttctccattccagcagcaactgttgggaaaaagattggaaacaagatcctagcatacattaataatacacgcctccctacggcaaggattctctctgctaaaactgttttgggagctcaacctgctcctcgagtaacagcattttcttcaaaaggtcctaattctctaacaccagaaattttgaagcctgatattactgctccgggattaaatatcctggcagcatggtccccagcaatgtctaggttgaacttcaacatactctctggaacttccatggcttgccctcacatatcaggagttgttgctttgttaaaagccgtgcatncatcatggtctccctctgcaatcaaatcagccatcatgacaacagccaaactatcagatatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133458" stop="131563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133158" g_stop="133054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133053" i_stop="132972" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132971" g_stop="132729" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="348" r_length="243" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132728" i_stop="132641" i_length="88">
            <donor d_prob="0.724" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132640" g_stop="132526" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="463" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132277" g_stop="132091" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="650" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131881" g_stop="131863" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="669" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E420545" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133158" e_stop="133054"/>
          <exon e_start="132971" e_stop="132729"/>
          <exon e_start="132640" e_stop="132526"/>
          <exon e_start="132277" e_stop="132091"/>
          <exon e_start="131881" e_stop="131863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAGGTAAACTAGATGCCTTACATAGTCTAACTATGCAACTCTTGATTCTGAGGTTTGCTTTAAAGAAGGAAAAGGGTGAGGGGATCAAGATTTGGTTTTGTTTGAGCATATTATCTTAAAAATACTTATGGTTTTATTTGAGCATTGTATGTTAATGTATAAAGTGAATTTAACTATTACAGAATAATCTAATGTCATGAATGTTAATGCAGCCAAACTATCAGATATGCA</genome_strand>
        <mrna_strand>TGAAAGTCTTAGCTTATATCAAATGAATACATCTGCAAGAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCCTATCAATCCAGGTGAAGCAGAAG..................................................................................TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATCCCCTTCTCCATTCCAGCAGCAACTGTTGGGAAAAAGATTGGAAACAAGATCCTAGCATACATTAATAATACACG........................................................................................CCTCCCTACGGCAAGGATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAAAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCGGGATTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAACTTCAACATACTCTCTGGAACTTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCTTTGTTAAAAGCCGTGCATNCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG.................................................................................................................................................................................................................CCAAACTATCAGATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406407" ref_strand="+" ref_description="SGN-E406407 [PPI-3-P9]">
      <seq>tgaaagtcttagcttatatcaaatgaatacatctgcaagaatcatacctgcttctgaagcttatgctggatacttcactccctatcaatccaggtgaagcagaagttattgcttagatagttctttgaatagaactaaggccaaagggaaggttcttgtgtgtcgacatgctggaagctcaagtgagtcaaagctggagaaaagcaatatagttaaacaagctggtggagttgggatgatccttattgatgaagcagacaagggtgtggctatccccttctccattccagcagcaactgttgggaaaaagattggaaacaagatcctagcatacattaataatacacgcctccctacggcaaggattctctctgctaaaactgttttgggagctcaacctgctcctcgagtaacagcattttcttcaaaaggtcctaattctctaacaccagaaattttgaagcctgatattactgctccgggattaaatatcctggcagcatggtccccagcaatgtctaggttgaacttcaacatactctctggaacttccatggcttgccctcacatatcangagttgttgctttgttaaaagccgtgcatccatcatggtctncctctgcaatcaaatcagccatcatgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133458" stop="131793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133158" g_stop="133054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133053" i_stop="132972" i_length="82">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132971" g_stop="132729" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="348" r_length="243" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132728" i_stop="132641" i_length="88">
            <donor d_prob="0.724" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132640" g_stop="132526" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="463" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132277" g_stop="132093" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="648" r_length="185" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E406407" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133158" e_stop="133054"/>
          <exon e_start="132971" e_stop="132729"/>
          <exon e_start="132640" e_stop="132526"/>
          <exon e_start="132277" e_stop="132093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAAC</genome_strand>
        <mrna_strand>TGAAAGTCTTAGCTTATATCAAATGAATACATCTGCAAGAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCCTATCAATCCAGGTGAAGCAGAAG..................................................................................TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATCCCCTTCTCCATTCCAGCAGCAACTGTTGGGAAAAAGATTGGAAACAAGATCCTAGCATACATTAATAATACACG........................................................................................CCTCCCTACGGCAAGGATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAAAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCGGGATTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAACTTCAACATACTCTCTGGAACTTCCATGGCTTGCCCTCACATATCANGAGTTGTTGCTTTGTTAAAAGCCGTGCATCCATCATGGTCTNCCTCTGCAATCAAATCAGCCATCATGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345375" ref_strand="+" ref_description="SGN-E345375 [cTOF-13-E20]">
      <seq>aaagtcttagcttatctcaaatgcatacatctgcaaaaatcatacctgcttctgaagcttatgctggatacttcactccttatcaatccaggtgaagcagaagttattgcttagatagttctttgaatagaactaaggccaaagggaaggttcttgtgtgtcgacatgctggaagctcaagtgagtcaaagctggagaaaagcaatatagttaaacaagctggtggagttgggatgatccttattgatgaagcagacaagggtgtggctattcccttctccattccagcagcaactgttgggcaaaagattggaaaaaagatcctagcttacattaataatacacggttcacttctttgttagtggctgttgatatttgtttttattgttctttgatgttgttagcaatcatctcatctcttttatatttacagcctccctactgcaagaattctctctgctaaaactgttttgggagctcaacctgctcctcgagtaacagcattttcttcaagaggtcctaattctctaacaccagaaattttgaagcctgatattactgctcccggtttaaatatcctggcagcatggtccccagcaatgtctangttgaagttcaacatactctctggaacctncatggcttgccctcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133456" stop="131870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133156" g_stop="133054" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133053" i_stop="132972" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132971" g_stop="132526" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="549" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132277" g_stop="132170" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="657" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E345375" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133156" e_stop="133054"/>
          <exon e_start="132971" e_stop="132526"/>
          <exon e_start="132277" e_stop="132170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATA</genome_strand>
        <mrna_strand>AAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAG..................................................................................TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTANGTTGAAGTTCAACATACTCTCTGGAACCTNCATGGCTTGCCCTCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428333" ref_strand="+" ref_description="SGN-E428333 [STM-50-K19]">
      <seq>ctttttgggtgatagtcttagcttatctcaaatgaatacatctgcaaggatcatacctgcttctgaagcttatgctggatacttcactccctatcaatccagttattgcttagatagttctttgaatagaactaaggccaaagggaaggttcttgtgtgtcgacatgctggaagctcaagtgagtcaaagctggagaaaagcaatatagttaaacaagctggtggggttgggatgatccttattgatgaagcagacaagggtgtggctatccctttcaccattccagcagcaactgttgggaaaaggattggaaacaagatcctagcttacattaataatacacggttcacttccttcttagtggctgttgatgtttgttttatttttctttgatattattagcaatcatctcatcttttttatattaacagcctccctacggcaaggattctctctgctaaaactgttttgggagctcaacctgctcctcgagtaacagcattttcttcaagaggtcctaattctctaacaccagaaattttgaagcctgatattactgctcccgggataaatatcctggcagcatggtccccagcaatgtctaatttgaactttcacatactctctggaacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133461" stop="131888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133160" g_stop="133066" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="102" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133065" i_stop="132972" i_length="94">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132971" g_stop="132526" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="547" r_length="445" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132277" g_stop="132188" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="637" r_length="90" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E428333" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133160" e_stop="133066"/>
          <exon e_start="132971" e_stop="132526"/>
          <exon e_start="132277" e_stop="132188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAGGTAATTTATTTGCTTAAAATAGTACCGAATTAAAAGTCTTTCAACTGCTCCTTTGTTTTCTACATCGATCCCTCTTTGCATTTATCATTTAGACCAACAAAGTCTTATGTTGCATCCTGAGATTTCCTTCCAGGATCTTCAATGTGGTTTTAGATTCTTTCTTTTAACTTTGCATCTCTTTGTTCCTACTTTATATGAGGATTTACTTTTTTTCTTGCAAGTAATATACCTGCTGATTTTCCTTGTAGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCC</genome_strand>
        <mrna_strand>GGTGATAGTCTTAGCTTATCTCAAATGAATACATCTGCAAGGATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCCTATCAATCCAG..............................................................................................TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGGGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATCCCTTTCACCATTCCAGCAGCAACTGTTGGGAAAAGGATTGGAAACAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCCTTCTTAGTGGCTGTTGATGTTTG-TTTTATTTTTCTTTGATATTATTAGCAATCATCTCATCTTTTTTATATTAACAGCCTCCCTACGGCAAGGATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG........................................................................................................................................................................................................................................................CCTGATATTACTGCTCCCGGGATAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAATTTGAACTTTCACATACTCTCTGGAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245226" ref_strand="+" ref_description="SGN-E245226 [cLEF-44-B21]">
      <seq>tccccaaggagattattttagtgatgcaatttctgtggggtcatttcatgctgttagccgtgggatacttgtagtggcctccgttggaaatgaaggaacctctggttcagccacaaatttagctccttggatgatcacagttgcagccagttcaaccgatagagattttacatctgatgttttactaggaaatagagttcaactcacgggtgaaagtcttagcttatctcaaatgcatacatctgcaaaaatcatacctgcttctgaagcttatgctggatacttcactccttatcaatccaggtgaagcagaagttattgcttagatagttctttgaatagaactaaggccaaagggaaggttcttgtgtgtcgacatgctggaagctcaagtgagtcaaagctggagaaaagcaatatagttaaacaagctggtggagttgggatgatccttattgatgaagcagacaagggtgtggctattcccttctccattccagcagcaactgttgggcaaaagattggaaaaaagatcctagcttacattaataataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133748" stop="132431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133448" g_stop="133241" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133160" g_stop="133054" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="315" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133053" i_stop="132972" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132971" g_stop="132731" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="556" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E245226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133448" e_stop="133241"/>
          <exon e_start="133160" e_stop="133054"/>
          <exon e_start="132971" e_stop="132731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACGGTAATCCCACTTTTCGAATAGTTCATATGTGAAGTTATATCCAGTTTCTATCTCCTCATTATGTTCTGGATATTTGGAAGGGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACA</genome_strand>
        <mrna_strand>TCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG................................................................................GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAG..................................................................................TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246938" ref_strand="+" ref_description="SGN-E246938 [cLEF-41-L2]">
      <seq>tctggttgctatgatgttgatttgttggctgcatttgatgatgcaattagagatggggttcatgtcatttctatatctttgggcccagatgctccccaaggagattattttagtgatgcaatttctgtggggtcatttcatgctgttagccgtgggatacttgtagtggcctccgttggaaatgaaggaacctctggttcagccacaaatttagctccttggatgatcacagttgcagccagttcaaccgatagagattttacatctgatgttttactaggaaatagagttcaactcacgggtgaaagtcttagcttatctcaaatgcatacatctgcaaaaatcatacctgcttctgaagcttatgctggatacttcactccttatcaatccaggtgaagcagaaggtacttaactgtttgttaattgtagatatgtatgcattgacaattatattaaagtacttttcgttcctatcttttccactagttattgcttagatagttctttgaatagaactaaggccaaagggaaggttcttgtgtgtcgacatgctggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133840" stop="132599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133540" g_stop="133241" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133160" g_stop="132899" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="562" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E246938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133540" e_stop="133241"/>
          <exon e_start="133160" e_stop="132899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACGGTAATCCCACTTTTCGAATAGTTCATATGTGAAGTTATATCCAGTTTCTATCTCCTCATTATGTTCTGGATATTTGGAAGGGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGC</genome_strand>
        <mrna_strand>TCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG................................................................................GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396406" ref_strand="+" ref_description="SGN-E396406 [TUS-35-N23]">
      <seq>ttcaagtctgccagggacagttctggtcatggaagtcatacagcttcaactgctgctgggcgttatgtagctgatatgaattacaaaggtttggcatctggaggagccagaggtggtgccccaatggccaggatagcagtgtacaaaacctgctggagttctggttgctatgatgttgatttgttggctgcatttgatgatgcaattagagatggggttcatgtcatttctatatctttgggcccagatgctccccaaggagattattttagtgatgcaatttctgtggggtcatttcatgctgttagccgtgggatacttgtagtggcctccgttggaaatgaaggaacctctggttcagccacaaatttagctccttggatgatcacagttgcagccagttcaaccgatagagattttacatctgatgttttactaggaaatagagttcaactcacgggtgaaagtcttagcttatctcaaatgcatacatctgcaaaaatcatacctgcttctgaagcttatgctggatacttcactccttatcaatccaggtgaagcaaaagttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133999" stop="132749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133699" g_stop="133241" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133160" g_stop="133054" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="566" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E396406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133699" e_stop="133241"/>
          <exon e_start="133160" e_stop="133054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACGGTAATCCCACTTTTCGAATAGTTCATATGTGAAGTTATATCCAGTTTCTATCTCCTCATTATGTTCTGGATATTTGGAAGGGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAG</genome_strand>
        <mrna_strand>TTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG................................................................................GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276528" ref_strand="+" ref_description="SGN-E276528 [cLEN-17-A12]">
      <seq>tcaagtctgccagggacagttctggtcatggaagtcatacagcttcaactgctgctgggcgttatgtagctgatatgaattacaaaggtttggcatctggaggagccagaggtggtgccccaatggccaggatagcagtgtacaaaacctgctggagttctggttgctatgatgttgatttgttggctgcatttgatgatgcaattagagatggggttcatgtcatttctatatctttgggcccagatgctccccaaggagattattttagtgatgcaatttctgtggggtcatttcatgctgttagccgtgggatacttgtagtggcctccgttggaaatgaaggaacctctggttcagccacaaatttagctccttggatgatcacagttgcagccagttcaaccgatagagattttacatctgatgttttactaggaaatagagttcaactcacgggtgaaagtcttagcttatctcaaatgcatacatctgcaaaaatcatacctgcttctgaagcttatgctggatacttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="133998" stop="132781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133698" g_stop="133241" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133160" g_stop="133081" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="538" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E276528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133698" e_stop="133241"/>
          <exon e_start="133160" e_stop="133081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACGGTAATCCCACTTTTCGAATAGTTCATATGTGAAGTTATATCCAGTTTCTATCTCCTCATTATGTTCTGGATATTTGGAAGGGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCAC</genome_strand>
        <mrna_strand>TCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG................................................................................GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337672" ref_strand="+" ref_description="SGN-E337672 [cTOE-17-H13]">
      <seq>acatgcctccagtgcctgctggatggaaaggacaatgccaatcaggggaagcattcaatgcctcaatatgcaacaggaaaataattggggcaagatattatatgagtggctatgcagctgaagaagatgaaaagatcatgttcaagtctgccagggacagttctggtcatggaagtcatacagcttcaactgctgctgggcgttatgtagctgatatgaattacaaaggtttggcatctggaggagccagaggtggtgccccaatggccaggatagcagtgtacaaaacctgctggagttctggttgctatgatgttgatttgttggctgcatttgatgatgcaattagagatggggttcatgtcatttctatatctttgggcccagatgctccccaaggagattattttagtgatgcaatttctgtggggtcatttcatgctgttagccgtgggatacttgtagtggcctccgttggaaatgaaggaacctctggttcagccacaaatttagctccttggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="134224" stop="133014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133924" g_stop="133849" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133763" g_stop="133314" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="526" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E337672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133924" e_stop="133849"/>
          <exon e_start="133763" e_stop="133314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAGGTTTCTTTTAATTATCAACCATTTCTTGCAGTTTAATGTATTGTTTTATAGATGACAAGTCTAATAAGAATTTTGTCTTGTATAGGAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGAT</genome_strand>
        <mrna_strand>ACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG.....................................................................................GAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335477" ref_strand="+" ref_description="SGN-E335477 [cTOE-2-I11]">
      <seq>gaatttggcctgagtctccaagttttagggacacccacatgcctccagtgcctgctggatggaaaggacaatgccaatcaggggaagcattcaatgcctcaatatgcaacaggaaaataattggggcaagatattatatgagtggctatgcagctgaagaagatgaaaagatcatgttcaagtctgccagggacagttctggtcatggaagtcatacagcttcaactgctgctgggcgttatgtagctgatatgaattacaaaggtttggcatctggaggagccagaggtggtgccccaatggccaggatagcagtgtacaaaacctgctggagttctggttgctatgatgttgatttgttggctgcatttgatgatgcaattagagatggggttcatgtcatttctatatctttgggcccagatgctccccaaggagattattttagtgatgcaatttctgtggggtcatttcatgctgttagccgtgggatacttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="134260" stop="133075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133960" g_stop="133849" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133763" g_stop="133375" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="501" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E335477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133960" e_stop="133849"/>
          <exon e_start="133763" e_stop="133375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAGGTTTCTTTTAATTATCAACCATTTCTTGCAGTTTAATGTATTGTTTTATAGATGACAAGTCTAATAAGAATTTTGTCTTGTATAGGAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAG</genome_strand>
        <mrna_strand>GAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG.....................................................................................GAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480084" ref_strand="+" ref_description="SGN-E480084 [cSTD-12-H7]">
      <seq>cttgttctgctataaaaaactcatctttttttctgcttgtagttgataatacattcttttactagcctcatacaacaagataggagatgggtgtttcaaaaaagactctttttttactctttctttgtgtttttcttggagaaattagtctctgcttttcttccaagttatatgtggtgtacatgggaagcaaagatagtgatgagcaccaagatgagattttgaggcaaaaccatcaaatgcttactgatattcatggaggaaatgttgaacaagccaagacttctcatgtatacagctatagacatggttttaaaggctttgcagccaagttgactgagaaacaggcttctgaaatatctaaaatgcctggtgtggtatctgtatttccaaatactaagaggaacctgcatacaactcattcatgggattttatggggctcagtgaagatgaaacaatggaaatcccaggtttttccaccaagaaccaagttaatgtaatcattggtttcattgatacaggaatttggcctgaatctncaaagtttagcgacaccaacatgcctncagtgccagctggatggaagggacantgccaatcangggaggcattcaatgcctcaatatgcaacaggaaaataattggggcaagatattatatgagtggctatgcagctgaagaagatgatggaaagaccatgtttcaagtctgccagggacagtactggtcattggaagtcatacagcttcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135621" stop="133348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135321" g_stop="135150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="265" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134768" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="363" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134676" g_stop="134518" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="522" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133960" g_stop="133849" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="634" r_length="112" r_score="0.893"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="133763" g_stop="133648" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="755" r_length="121" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E480084" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135321" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134768"/>
          <exon e_start="134676" e_stop="134518"/>
          <exon e_start="133960" e_stop="133849"/>
          <exon e_start="133763" e_stop="133648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTAGTGAGTCTTTTACCTAATGTTTTATGTTACTGTTGATTACCTAATTTGATGGTTTGTACTCAGTCCACTGTTTGATGTTGAAACAAAACAGAAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAGGTGATCATTTCTCTGTTCAACTAGCTCAAAGTTGTCTTAATTGCTGCAATCTTGTTCCAGTTAGGTGAAAGATATGATTGTTTAGGTGATCGATGGCACAAACAAAGTCGGTCCCTTCACTGATTGTGTTGTCACGTAATCACTAGTTACTTTTCTTAAGAAGAGTACAATAACATGACTCTGAAAAAGTGCTGAGTTTGTCATTTAGGTACATATGGTTGAACCTGGGGAAAGTAGTTCCTTTAGTACGTTGTTCCCTTTTCATCTCTGTAGGCATGTAGGATAAGTTTTACTGCGCATCAATCAATTCTTGTTTCAATCATTTGAGAATGATGGGATATGTTTGCTTAGATTTTCTTTAGCCCAAGTTTATTCAATTTTTCAACTTCCCAGTTTCTTCTTTGCATTTGTTGTACTGCTTGTGAATGTAAATAGAGTAAAGTCATCTCTCTGTTCATAACCTTATCAGTTTATCATTAGCCTGGTCCCCAGCTTCCTTGTTTTTTTCGAACTAATTAGATTTTGAGGTTAAGATCTTGAGACATTTACTGAAACAGGAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAGGTTTCTTTTAATTATCAACCATTTCTTGCAGTTTAATGTATTGTTTTATAGATGACAAGTCTAATAAGAATTTTGTCTTGTATAGGAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGA---AAAGATCATG-TTCAAGTCTGCCAGGGACAGTTCTGGTCA-TGGAAGTCATACAGCTTCAACTG</genome_strand>
        <mrna_strand>CTTGTTCTGCTATAAAAAA-CTCATC----TTTTTTTCTGCTTGTAGTTGATAATACATTCTTTTACTAGCCTCATACAACAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTCTTTCTTTGTGTTTTTCTTGGAGAAATTAGTCTCTGCTTTTCTTCCAAG..........................................................................................TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCACCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAACAAGCCAAGACTTCTCATGTATACAGCTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA...........................................................................................AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGGAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGCCTGAATCTNCAAAGTTTAGCGACACCAACATGCCTNCAGTGCCAGCTGGATGGAAGGGACANTGCCAATCANGGGAGGCATTCAATGCCTCAATATGCAACAG.....................................................................................GAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGATGGAAAGACCATGTTTCAAGTCTGCCAGGGACAGTACTGGTCATTGGAAGTCATACAGCTTCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576470" ref_strand="+" ref_description="SGN-E576470 [59693]">
      <seq>agatgggtgtttcaaaaaagactcttcttttactctttctttgtgtttttcttggagaaattagtctctgcttttcttccaagttatatgtggtgtacatgggaagcaaagatagtgatgagcaccaagatgagattttgagacaaaaccatcaaatgcttactgatattcatggaggaaatgttgaacaacgccaagacttctcatgtatacagttatagacatggttttaaaggctttgcagccaagttgactgagaaacaggcttctgaaatatctaaaatgcctggtgtggtatctgtatttccaaatactaagaggaacctgcatacaactcattcatgggattttatggggctcagtgaagatgaaacaatggaaatcccaggtttttccaccaagaaccaagttaatgtaatcattggtttcattgatacaggaatttggcctgagtctccaagttttagggataccaacatgcctccagtgccagctggatggaaaggacaatgccaatcaggggaagcattcaatgcctcaatatgcaacaggaaaataattggggcaagatattatatgacgtggctatgcagctgaagaagataatggaaagacatgttcaagtctgccgagggacagtactggtcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135532" stop="133405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135232" g_stop="135150" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="181" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134768" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="280" r_length="99" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134676" g_stop="134518" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="439" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133960" g_stop="133849" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="551" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="133763" g_stop="133667" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="652" r_length="101" r_score="0.856"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E576470" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135232" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134768"/>
          <exon e_start="134676" e_stop="134518"/>
          <exon e_start="133960" e_stop="133849"/>
          <exon e_start="133763" e_stop="133667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAACAA-GCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTAGTGAGTCTTTTACCTAATGTTTTATGTTACTGTTGATTACCTAATTTGATGGTTTGTACTCAGTCCACTGTTTGATGTTGAAACAAAACAGAAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAGGTGATCATTTCTCTGTTCAACTAGCTCAAAGTTGTCTTAATTGCTGCAATCTTGTTCCAGTTAGGTGAAAGATATGATTGTTTAGGTGATCGATGGCACAAACAAAGTCGGTCCCTTCACTGATTGTGTTGTCACGTAATCACTAGTTACTTTTCTTAAGAAGAGTACAATAACATGACTCTGAAAAAGTGCTGAGTTTGTCATTTAGGTACATATGGTTGAACCTGGGGAAAGTAGTTCCTTTAGTACGTTGTTCCCTTTTCATCTCTGTAGGCATGTAGGATAAGTTTTACTGCGCATCAATCAATTCTTGTTTCAATCATTTGAGAATGATGGGATATGTTTGCTTAGATTTTCTTTAGCCCAAGTTTATTCAATTTTTCAACTTCCCAGTTTCTTCTTTGCATTTGTTGTACTGCTTGTGAATGTAAATAGAGTAAAGTCATCTCTCTGTTCATAACCTTATCAGTTTATCATTAGCCTGGTCCCCAGCTTCCTTGTTTTTTTCGAACTAATTAGATTTTGAGGTTAAGATCTTGAGACATTTACTGAAACAGGAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAGGTTTCTTTTAATTATCAACCATTTCTTGCAGTTTAATGTATTGTTTTATAGATGACAAGTCTAATAAGAATTTTGTCTTGTATAGGAAAATAATTGGGGCAAGATATTATATGA-GTGGCTATGCAGCTGAAGAAGATGA--AAAGATCATGTTCAAGTCTGCC-AGGGACAGTTCTGGTCATGGA</genome_strand>
        <mrna_strand>AGATGGGTGTTTCAAAAAAGACTCTTCTTTTACTCTTTCTTTGTGTTTTTCTTGGAGAAATTAGTCTCTGCTTTTCTTCCAAG..........................................................................................TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCACCAAGATGAGATTTTGAGACAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAACAACGCCAAGACTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA...........................................................................................AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGGAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGCCTGAGTCTCCAAGTTTTAGGGATACCAACATGCCTCCAGTGCCAGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG.....................................................................................GAAAATAATTGGGGCAAGATATTATATGACGTGGCTATGCAGCTGAAGAAGATAATGGAAAGACATGTTCAAGTCTGCCGAGGGACAGTACTGGTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576471" ref_strand="+" ref_description="SGN-E576471 [59694]">
      <seq>agatgggtgtttcaaaaaagactcttcttttactctttctttgtgtttttcttggagaaattagtctctgcttttcttccaagttatatgtggtgtacatgggaagcaaagatagtgatgagcaccaagatgagattttgagacaaaaccatcaaatgcttactgatattcatggaggaaatgttgaacaagccaagacttctcatgtatacagttatagacatggttttaaaggctttgcagccaagttgactgagaaacaggcttctgaaatatctaaaatgcctggtgtggtatctgtatttccaaatactaagaggaacctgcatacaactcattcatgggattttatggggctcagtgaagatgaaacaatggaaatcccaggtttttccaccaagaaccaagttaatgtaatcattggtttcattgatacaggaatttggcctgagtctccaagttttagggataccaacatgcctccagtgccagctggatggaaaggacaatgccaatcaggggaagcattcaatgcctcaatatgcaacaggcaaaataattggggcaagatattatatgagtggctatgcagctgaagaagataactggaaagacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135532" stop="133409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135232" g_stop="135150" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="181" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134768" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="279" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134676" g_stop="134518" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="438" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133960" g_stop="133849" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="550" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="133763" g_stop="133714" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="601" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E576471" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135232" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134768"/>
          <exon e_start="134676" e_stop="134518"/>
          <exon e_start="133960" e_stop="133849"/>
          <exon e_start="133763" e_stop="133714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTAGTGAGTCTTTTACCTAATGTTTTATGTTACTGTTGATTACCTAATTTGATGGTTTGTACTCAGTCCACTGTTTGATGTTGAAACAAAACAGAAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAGGTGATCATTTCTCTGTTCAACTAGCTCAAAGTTGTCTTAATTGCTGCAATCTTGTTCCAGTTAGGTGAAAGATATGATTGTTTAGGTGATCGATGGCACAAACAAAGTCGGTCCCTTCACTGATTGTGTTGTCACGTAATCACTAGTTACTTTTCTTAAGAAGAGTACAATAACATGACTCTGAAAAAGTGCTGAGTTTGTCATTTAGGTACATATGGTTGAACCTGGGGAAAGTAGTTCCTTTAGTACGTTGTTCCCTTTTCATCTCTGTAGGCATGTAGGATAAGTTTTACTGCGCATCAATCAATTCTTGTTTCAATCATTTGAGAATGATGGGATATGTTTGCTTAGATTTTCTTTAGCCCAAGTTTATTCAATTTTTCAACTTCCCAGTTTCTTCTTTGCATTTGTTGTACTGCTTGTGAATGTAAATAGAGTAAAGTCATCTCTCTGTTCATAACCTTATCAGTTTATCATTAGCCTGGTCCCCAGCTTCCTTGTTTTTTTCGAACTAATTAGATTTTGAGGTTAAGATCTTGAGACATTTACTGAAACAGGAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAGGTTTCTTTTAATTATCAACCATTTCTTGCAGTTTAATGTATTGTTTTATAGATGACAAGTCTAATAAGAATTTTGTCTTGTATAGG-AAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAG</genome_strand>
        <mrna_strand>AGATGGGTGTTTCAAAAAAGACTCTTCTTTTACTCTTTCTTTGTGTTTTTCTTGGAGAAATTAGTCTCTGCTTTTCTTCCAAG..........................................................................................TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCACCAAGATGAGATTTTGAGACAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAACAAGCCAAGACTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA...........................................................................................AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGGAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGCCTGAGTCTCCAAGTTTTAGGGATACCAACATGCCTCCAGTGCCAGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG.....................................................................................GCAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399879" ref_strand="+" ref_description="SGN-E399879 [cSTC-2-L2]">
      <seq>cttttactagcctcatacaacaagataggagatgggtgtttcaaaaaagactctttttttactctttctttgtgtttttcttggagaaattagtctctgcttttcttccaagttatatgtggtgtacatgggaagcaaagatagtgatgagcaccaagatgagattttgaggcaaaaccatcaaatgcttactgatattcatggaggaaatgttgaacaagccaagacttctcatgtatacagttatagacatggttttaaaggctttgcagccaagttgactgagaaacaggcttctgaaatatctaaaatgcctggtgtggtatctgtatttccaaatactaagaggaacctgcatacaactcattcatgggattttatggggctcagtgaagatgaaacaatggaaatcccaggtttttccaccaagaaccaagttaatgtaatcattggtttcattgatacaggaatttggcctgaatctccaagttttagcgacaccaacatgcctccaatgccagctggatggaaaggacaatgccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135561" stop="133583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135261" g_stop="135150" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="210" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134768" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="308" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134676" g_stop="134518" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="467" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133960" g_stop="133883" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="545" r_length="78" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E399879" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135261" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134768"/>
          <exon e_start="134676" e_stop="134518"/>
          <exon e_start="133960" e_stop="133883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTAGTGAGTCTTTTACCTAATGTTTTATGTTACTGTTGATTACCTAATTTGATGGTTTGTACTCAGTCCACTGTTTGATGTTGAAACAAAACAGAAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAGGTGATCATTTCTCTGTTCAACTAGCTCAAAGTTGTCTTAATTGCTGCAATCTTGTTCCAGTTAGGTGAAAGATATGATTGTTTAGGTGATCGATGGCACAAACAAAGTCGGTCCCTTCACTGATTGTGTTGTCACGTAATCACTAGTTACTTTTCTTAAGAAGAGTACAATAACATGACTCTGAAAAAGTGCTGAGTTTGTCATTTAGGTACATATGGTTGAACCTGGGGAAAGTAGTTCCTTTAGTACGTTGTTCCCTTTTCATCTCTGTAGGCATGTAGGATAAGTTTTACTGCGCATCAATCAATTCTTGTTTCAATCATTTGAGAATGATGGGATATGTTTGCTTAGATTTTCTTTAGCCCAAGTTTATTCAATTTTTCAACTTCCCAGTTTCTTCTTTGCATTTGTTGTACTGCTTGTGAATGTAAATAGAGTAAAGTCATCTCTCTGTTCATAACCTTATCAGTTTATCATTAGCCTGGTCCCCAGCTTCCTTGTTTTTTTCGAACTAATTAGATTTTGAGGTTAAGATCTTGAGACATTTACTGAAACAGGAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAAT</genome_strand>
        <mrna_strand>CTTTTACTAGCCTCATACAACAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTCTTTCTTTGTGTTTTTCTTGGAGAAATTAGTCTCTGCTTTTCTTCCAAG..........................................................................................TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCACCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAACAAGCCAAGACTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA...........................................................................................AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGGAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGCCTGAATCTCCAAGTTTTAGCGACACCAACATGCCTCCAATGCCAGCTGGATGGAAAGGACAATGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329136" ref_strand="+" ref_description="SGN-E329136 [cTOD-2-G11]">
      <seq>ttttcaaatcattctctctctctgtgtgtcttgttctgctataaaaaacctcatctttttttttttcatcttgtagttgataatacattcttttactagccttatacatcaagataggagatgggtgtttcaaaaaagactctttttttactatttgttagtgtttttcttggagaaattagtctctgctcttctaccaagttatatgtggtgtacatggnaancaaagatagtgatgagcatcaagatgagattttgaggcaaaaccatcaaatgcttactgatattcatggaggaaatgttgaacaagccaagagttctcatgtatacagttatagacatggttttaaaggctttncagccaagttgactgagaaacaggcttctgaaatatctaaaatgcctggtgtggtatctgtatttccaaatactaagagaaacctgcatacaactcattcatgggattttatggggctcagtgaagatgaaacaatggaaatcccaggtttttccaccaagaaccaagttaatgtaatcattggtttcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135650" stop="134223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135350" g_stop="135150" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="299" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134768" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134676" g_stop="134523" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="551" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E329136" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135350" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134768"/>
          <exon e_start="134676" e_stop="134523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTAGTGAGTCTTTTACCTAATGTTTTATGTTACTGTTGATTACCTAATTTGATGGTTTGTACTCAGTCCACTGTTTGATGTTGAAACAAAACAGAAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGA</genome_strand>
        <mrna_strand>TTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAG..........................................................................................TTATATGTGGTGTACATGGNAANCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTNCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA...........................................................................................AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428484" ref_strand="+" ref_description="SGN-E428484 [STM-50-M6]">
      <seq>cttgttctgctataaaaaactcatctttttttctgcttgtagttgataatacattcttttactagcctcatacaacaagataggagatgggtgtttcaaaaaagactctttttttactctttctttgtgtttttcttggagaaattagtctctgcttttcttccaagttatatgtggtgtacatgggaagcaaagatagtgatgagcaccaagatgagattttgaggcaaaaccatcaaatgcttactgatattcatggaggaaatgttgaacaagccaagacttctcatgtatacagctatagacatggttttaaaggctttgcagccaagttgactgagaaacaggcttctgaaatatctaaaatgcctggtgtggtatctgtatttccaaatactaagaggaacctgcatacaactcattcatgggattttatggggctcagtgaagatgaaacaatggaaatcccaggttttttcaccaagaaccaagttaatgtaatcattggtttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135621" stop="134224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135321" g_stop="135150" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="265" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134768" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="363" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134676" g_stop="134524" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="516" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E428484" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135321" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134768"/>
          <exon e_start="134676" e_stop="134524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTAGTGAGTCTTTTACCTAATGTTTTATGTTACTGTTGATTACCTAATTTGATGGTTTGTACTCAGTCCACTGTTTGATGTTGAAACAAAACAGAAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTG</genome_strand>
        <mrna_strand>CTTGTTCTGCTATAAAAAA-CTCATC----TTTTTTTCTGCTTGTAGTTGATAATACATTCTTTTACTAGCCTCATACAACAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTCTTTCTTTGTGTTTTTCTTGGAGAAATTAGTCTCTGCTTTTCTTCCAAG..........................................................................................TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCACCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAACAAGCCAAGACTTCTCATGTATACAGCTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA...........................................................................................AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGGAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTTCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248028" ref_strand="+" ref_description="SGN-E248028 [cLEF-47-I24]">
      <seq>cattttcttttgtctaaacaatcgggaaaaaaggggtttatgagatcgaatatgattatatgaaatatctcttaattttatccgacgcagtacgtcaatggaaatatattatgtctactactattacacagtatacctgtgactgaataatctctttctctttctctctccctctcctctttattttcaaatgattctctctctctgcgtgtcttgttctgctataaaaaacctcatctttttttgttttcatctatgagatgataatacattcttttactaaccttatacatcaagataggagatgggtgtttcacaaaagactctttttttactattggtgggtgtggttcttggagaaattagtctctgctcttctaccaagttatatgtggcgtacatgggaagcaaagatcgcgatgagcatcaagatgagagatcgaggcaaaaccatcaaatgcttactgatattcatggaggaaatgttgaacaagccaagagttctcatgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135833" stop="134536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135533" g_stop="135150" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="483" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134836" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="513" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E248028" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135533" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTTTTGTCTAAGCAATCGCGAAAAAAATTATTTAAGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTTAATGGAAATATATTTTGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTT-TTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAACAAGCCAAGAGTTCTCATGTATA</genome_strand>
        <mrna_strand>CATTTTCTTTTGTCTAAACAATCGGGAAAAAAGGGGTTTATGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTCAATGGAAATATATTATGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATGATTCTCTCTCTCTGCGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTGTTTTCATCTATGAGATGATAATACATTCTTTTACTAACCTTATACATCAAGATAGGAGATGGGTGTTTCACAAAAGACTCTTTTTTTACTATTGGTGGGTGTGGTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAG..........................................................................................TTATATGTGGCGTACATGGGAAGCAAAGATCGCGATGAGCATCAAGATGAGAGATCGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAACAAGCCAAGAGTTCTCATGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248025" ref_strand="+" ref_description="SGN-E248025 [cLEF-47-I8]">
      <seq>ttccattttcttttgtctaagcaatcgcgaaaaaaattatttaagagatcgaatatgattatatgaaatatctcttaattttatccgacgcagtacgttaatggaaatatattttgtctactactattacacagtatacctgtgactgaataatctctttctctttctctctccctctcctctttattttcaaatcattctctctctctgtgtgtcttgttctgctataaaaaacctcatcttttttttttttcatcttgtagttgataatacattcttttactagccttatacatcaagataggagatgggtgtttcaaaaaagactctttttttactatttgttagtgtttttcttggagaaattagtctctgctcttctaccaagttatatgtggtgtacatgggaagcaaagatagtgatgagcatcaagatgagattttgaggcaaaaccatcaaatgcttactgatattcatggaggaaatgttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="-" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="135836" stop="134660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135536" g_stop="135150" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90">
            <donor d_prob="0.267" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135059" g_stop="134962" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="486" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134865" g_stop="134858" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="494" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="-" ref_id="SGN-E248025" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135536" e_stop="135150"/>
          <exon e_start="135059" e_stop="134962"/>
          <exon e_start="134865" e_stop="134858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTTCTTTTGTCTAAGCAATCGCGAAAAAAATTATTTAAGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTTAATGGAAATATATTTTGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATC-TTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAGGTAAATTTGGCTCTGTGTGAACTATGGGGACATATGGGGTTTTCTTTGAATGATGAATAGTTAGTAAAGTTGTGTTTTTTCTGTGTTTAGTTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAAGTAAGTTGTTGGTACTTTTAGCTATGAGTTTGTTTTCCCCCTTTTTGTCTGTTTTTGGCAAAAATAAAAAACTGAAGTGGTTAATAATCTTTACAGTGTTGAAC</genome_strand>
        <mrna_strand>TTCCATTTTCTTTTGTCTAAGCAATCGCGAAAAAAATTATTTAAGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTTAATGGAAATATATTTTGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAG..........................................................................................TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA................................................................................................TGTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747324" ref_strand="+" ref_description="SGN-E747324 [GI|47104638]">
      <seq>ttttttttttttttgagtgaacctctttatctcttattcacaattgattgccatattccaccatgaaaatatacagtgcaaaaaacatcaacaaaaatggtggcattagcttcttcatctctctgcaattccccttcttcaattatccattcctcaaaaacatctatacccaatttcattacattctcttccttaagttattacaagaaaaggggaaaatcgcttgcaagtcgtagccttggaattgttgctgctactgaaggttctgttaacaaatctagtggaaaagatgaggaaaaacaagaagacccatcagttcctacatgggctaaacccggtacggatgagcctccaccatgggctagaaatgaagcacagaaagattcttcaagcattcaagttccattcgttgtttatttgcttgcttctgctgtcacagcaattgcagcgattggttctattttcgagtacacgaatcagaaacctgtgtttggagttttgggttcagatagtgttttttatgctccattgcttgggttctttgtgttcactggcattcccacttctgcattcctttggttcaaatcagtacaagttgctaacaaggaggctgaggaacaagaccgcagggatggatatatgtaacatctaatatgcaatctttaggtgatatctgcagcatcttatatgcatttttcagatgttgttgatggttgtttcctaaaatactatcatcgcaaatgaatactttctcgaggtttgttctttctagagcagcatgagtgtaaaaattgtcttctcaataccagttattccgctttatcaattctaaaagtctttaatcaccagatttgactatttccatctctcatttgaaaaaatagtttatcgatttgtggttagacaagttacttgctgatcttttggcacaacttgtgtaagttatccaccaatctggtgttgcttcttaactcttaacatatcgaccttggtaaatcactaattctctatcttgtccctcactaccaagacttaggagcttgaggctttggttcacaacgtatttactaataagttgtaataaatagtcaaaagaatattcaaataggtcctgtgagttaaatacatagcataacttacaagttcagtctactctcattttgatggtatatcagcacttattccttcctcttatttattaagtgaacgaaaaaagttcacactctaatagcatcatagcatgtattgtctgcttgccttcacatgtctttttggtttcaagtgtttgtacctaagaaaccagcaagtcatttgtttcttggaattgagtagtgatatctgcagaatggtttgatactacattctacatgttgtatttcatttctttgaaataggatcgatatagttcttaatctgaagactatctctaaagtatgcttatattgctttagtttactgtttctcatttttgtagtatctgcctgagaatttcttgaaaaactgatcgcgagctagtaaaaaaaaatgttcagtcgttccacaacattctctctccttcctcgttgtgctatcacacagaactctgaattttgcagtctacttcctttgagcttttcaactctctggggcggtgaagttcatccatttctccaagagaagagaaaagatagggaagcaacatcatatgaagtcatgtgaacacaacttttgtccctgtagggaggacaattgtatttttccctcagaaatgaactttaatatagaaatatgtcatgggcatttcgaatcagaaaggaacttcaatatagaaatatgtcatgggcatttcaaatataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="145673" stop="149141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145971" g_stop="146420" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146421" i_stop="146519" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146520" g_stop="146636" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="567" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146637" i_stop="147571" i_length="935">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147572" g_stop="148840" g_length="1269"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="1836" r_length="1269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1837" polyA_stop="1852"/>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E747324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1836</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145971" e_stop="146420"/>
          <exon e_start="146520" e_stop="146636"/>
          <exon e_start="147572" e_stop="148840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTTTTTTTTTGAGTGAACCTCTTTATCTCTTATTCACAATTGATTGCCATATTCCACCATGAAAATATACAGTGCAAAAAACATCAACAAAAATGGTGGCATTAGCTTCTTCATCTCTCTGCAATTCCCCTTCTTCAATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCGGTGAGTTTTTTTCTTTTAAATCAGGAATTTCATTTTCTAGTGGAGAAGTTTTTTGGGGTCATTATAAAGATTGATTCTTGATTGGGTTTTTGAGTGCAGATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCTGTAAGTTGATTTATTTTTTTCTCTGTTCATGTCTTTCTGCTGTTTACGTTATGTTGAATTGTTTTGAATGATGAAACTAAGTTAGCGTTTGACCATAAATTTTGGACTAAATTTTGGTAATTTATATTTTGAATATCCGTTTGGCCGTGAAATTTGATTAGTTTTTGAAAATATGATCCTCAAAATACTTTTCAAGTTCCCAAAAGGGGCTTTTTTAGTTTTTGGGACTTCCACTCACGAGACATCAAATGTATGGCCAAATACAACTTTAAGTTCTAAAACTAACAACTTCAAAGAGTTTCTACCTCCGTCTTCAAATCTATGGCCAAACGGGAGCTTAAGACTATACAAATTTGGTCTTTTTGCAAGTTCTGTTTTCAACCCACTTGTAGGTGATTTACTGCCTGTATTTCCATATTTTAAGATAATGGTAGCTACTTCTGTTATTTAAATTATAAGGTAACAATTTCATTAATTGGAAAGAGGAACCAATGAAGAAGTTCCTTAATAGATCTTTGTTTTGTTAGTTACATTTCGGTTCAAAAATATTCCCTTGTTTCAATTTGTTTGTTCTAATTTCCATTTTAGTCCGTTTAAGAAAGAACAGGTTTTTCCTTTTCTAGAAATTCGGTAATTCTAACTTTCTATATGATATGTTTAAGACTACAAAATTCAAAAGATATTTTTACTTTCTTGAATTCCGTGCCAAGTTAATACTAGACAAACAAATTGGCTAAATATGCCAGTCTTGCCTGCATGGTGAGTACTGTATGGCTGGCATAATTTGTGGAACCTAACAGGGTTGGCTCCTCGGCCGACCCTCCATTTAAAAATAATAATAATAATAAAATCAGGGGAGTACTACTTTTGGCAAAAAGAAAAAGGAAAAGTTGATGTTTCTATATTCATTTGAGCTGATTAGAACATATATCCAGGCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGCAGGGATGGATATATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATCTTATATGCATTTTTCAGATGTTGTTGATGGTTGTTTCCTAAAATACTATCATCGCAAATGAATACTTTCTCGAGGTTTGTTCTTTCTAGAGCAGCATGAGTGTAAAAATTGTCTTCTCAATACCAGTTATTCCGCTTTATCAATTCTAAAAGTCTTTAATCACCAGATTTGACTATTTCCATCTCTCATTTGAAAAAATAGTTTATCGATTTGTGGTTAGACAAGTTACTTGCTGATCTTTTGGCACAACTTGTGTAAGTTATCCACCAATCTGGTGTTGCTTCTTAACTCTTAACATATCGACCTTGGTAAATCACTAATTCTCTATCTTGTCCCTCACTACCAAGACTTAGGAGCTTGAGGCTTTGGTTCACAACGTATTTACTAATAAGTTGTAATAAATAGTCAAAAGAATATTCAAATAGGTCCTGTGAGTTAAATACATAGCATAACTTACAAGTTCAGTCTACTCTCATTTTGATGGTATATCAGCACTTATTCCTTCCTCTTATTTATTAAGTGAACGAAAAAAGTTCACACTCTAATAGCATCATAGCATGTATTGTCTGCTTGCCTTCACATGTCTTTTTGGTTTCAAGTGTTTGTACCTAAGAAACCAGCAAGTCATTTGTTTCTTGGAATTGAGTAGTGATATCTGCAGAATGGTTTGATACTACATTCTACATGTTGTATTTCATTTCTTTGAAATAGGATCGATATAGTTCTTAATCTGAAGACTATCTCTAAAGTATGCTTATATTGCTTTAGTTTACTGTTTCTCATTTTTGTAGTATCTGCCTGAGAATTTCTTGAAAAACTGATCGCGAGCTAGTAAAAAAAAATGTTCAGTCGTTCCACAACATTCTCTCTCCTTCCTCGTTGTGCTATCACACAGAACTCTGAATTTTGCAGTCTACTTCCTTTGAGCTTTTCAACTCTCTGGGGCGGTGAAGTTCATCCATTTCTCCAAGAGAAGAGAAAAGATAGGGAAGCAACATCATATGAAGTCATGTGAACACAACTTTTGTCCCTGTAGGGAGGACAATTGTATTTTTCCCTCAGAAATGAACTTTAATATAGAAATATGTCATGGGCATTTCGAATCAGAAAGGAACTTCAATATAGAAATATGTCATGGGCATTTCAAATATAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTGAGTGAACCTCTTTATCTCTTATTCACAATTGATTGCCATATTCCACCATGAAAATATACAGTGCAAAAAACATCAACAAAAATGGTGGCATTAGCTTCTTCATCTCTCTGCAATTCCCCTTCTTCAATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCG...................................................................................................ATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGCAGGGATGGATATATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATCTTATATGCATTTTTCAGATGTTGTTGATGGTTGTTTCCTAAAATACTATCATCGCAAATGAATACTTTCTCGAGGTTTGTTCTTTCTAGAGCAGCATGAGTGTAAAAATTGTCTTCTCAATACCAGTTATTCCGCTTTATCAATTCTAAAAGTCTTTAATCACCAGATTTGACTATTTCCATCTCTCATTTGAAAAAATAGTTTATCGATTTGTGGTTAGACAAGTTACTTGCTGATCTTTTGGCACAACTTGTGTAAGTTATCCACCAATCTGGTGTTGCTTCTTAACTCTTAACATATCGACCTTGGTAAATCACTAATTCTCTATCTTGTCCCTCACTACCAAGACTTAGGAGCTTGAGGCTTTGGTTCACAACGTATTTACTAATAAGTTGTAATAAATAGTCAAAAGAATATTCAAATAGGTCCTGTGAGTTAAATACATAGCATAACTTACAAGTTCAGTCTACTCTCATTTTGATGGTATATCAGCACTTATTCCTTCCTCTTATTTATTAAGTGAACGAAAAAAGTTCACACTCTAATAGCATCATAGCATGTATTGTCTGCTTGCCTTCACATGTCTTTTTGGTTTCAAGTGTTTGTACCTAAGAAACCAGCAAGTCATTTGTTTCTTGGAATTGAGTAGTGATATCTGCAGAATGGTTTGATACTACATTCTACATGTTGTATTTCATTTCTTTGAAATAGGATCGATATAGTTCTTAATCTGAAGACTATCTCTAAAGTATGCTTATATTGCTTTAGTTTACTGTTTCTCATTTTTGTAGTATCTGCCTGAGAATTTCTTGAAAAACTGATCGCGAGCTAGTAAAAAAAAATGTTCAGTCGTTCCACAACATTCTCTCTCCTTCCTCGTTGTGCTATCACACAGAACTCTGAATTTTGCAGTCTACTTCCTTTGAGCTTTTCAACTCTCTGGGGCGGTGAAGTTCATCCATTTCTCCAAGAGAAGAGAAAAGATAGGGAAGCAACATCATATGAAGTCATGTGAACACAACTTTTGTCCCTGTAGGGAGGACAATTGTATTTTTCCCTCAGAAATGAACTTTAATATAGAAATATGTCATGGGCATTTCGAATCAGAAAGGAACTTCAATATAGAAATATGTCATGGGCATTTCAAATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325469" ref_strand="+" ref_description="SGN-E325469 [cTOC-1-F4]">
      <seq>ccccgggctgcagaaaacataacaaaaatggggcattagcttcttcatcttctgcaattccccttcttcaattatcattctaaaaacatctatcccaatttcattacattctcttcttaagttattacaagaaaggggaaaatcgcttgcaagtcgtaccttggaattgtgctgctactgaaggttctgttaacaaatctagtggaaaagatgaggaaaaacaagaagacccatcagttcctacatgggctaaacccggtacggatgagcctccaccatgggctagaaatgaagcacagaaagattcttcaagcattcaagttccattcgttgtttatttgcttgcttctgctgtcacagcaattgcagcgattggttctattttcgagtacacgaatcagaaacctgtgtttggagttttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="145747" stop="146873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146047" g_stop="146420" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="371" r_length="363" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146421" i_stop="146519" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146520" g_stop="146573" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="425" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E325469" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146047" e_stop="146420"/>
          <exon e_start="146520" e_stop="146573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAAAACATCAACAAAAATGGTGGCATTAGCTTCTTCATCTCTCTGCAATTCCCCTTCTTCAATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCGGTGAGTTTTTTTCTTTTAAATCAGGAATTTCATTTTCTAGTGGAGAAGTTTTTTGGGGTCATTATAAAGATTGATTCTTGATTGGGTTTTTGAGTGCAGATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGT</genome_strand>
        <mrna_strand>TGCAGAAAACAT-AACAAAAATGG-GGCATTAGCTTCTTCATCT-TCTGCAATTCCCCTTCTTCAATTAT-CATT-CT-AAAAACATCTAT-CCCAATTTCATTACATTCTCTT-CTTAAGTTATTACAAG-AAAGGGGAAAATCGCTTGCAAGTCGTA-CCTTGGAATTG-TGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCG...................................................................................................ATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570942" ref_strand="+" ref_description="SGN-E570942 [15606]">
      <seq>caaaaatggtgacattagcttcttcatctctctgcaattcctcttcttcacttatccattcctcaaaaacatctctacccaatttcattacattctcttcctcaagttattacaagaaaaggggaaaatcgcttgcaagtcgtagccttggaattgtagctgctactgaaggctctgttaacaaatccagtggaaaagatgaagaaaaacaagaagacccatcagttcctacatgggctaaacccggtacggatgagcctccaccatgggctagaaatgaagcacagaaagattcttcaagctttcaagttccattcattgtttatttgcttgcttctgctgtcacagcaattgcagcgattggttctattttcgagtacacgaatcagaaacctgtgtttggagttttgggttcagatagtgttttttatgctcccttgcttgggttctttgttttcactggcattcccacttctgcattcctttggttcaaatcagtacaagttgctaacaaggaggcagaggaacaagaccgcnagggatggatataatgtaacatctaatatgcaatttttaggtgatatctgcagcatctttatatgcatgttcagatgctgcatgtaagtgggttgtttccaaagaaaatcatcatggcaaaatggatatttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="145762" stop="148010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146062" g_stop="146420" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146421" i_stop="146519" i_length="99">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146520" g_stop="146636" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="476" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146637" i_stop="147571" i_length="935">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147572" g_stop="147710" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="617" r_length="141" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E570942" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146062" e_stop="146420"/>
          <exon e_start="146520" e_stop="146636"/>
          <exon e_start="147572" e_stop="147710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGTGGCATTAGCTTCTTCATCTCTCTGCAATTCCCCTTCTTCAATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCGGTGAGTTTTTTTCTTTTAAATCAGGAATTTCATTTTCTAGTGGAGAAGTTTTTTGGGGTCATTATAAAGATTGATTCTTGATTGGGTTTTTGAGTGCAGATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCTGTAAGTTGATTTATTTTTTTCTCTGTTCATGTCTTTCTGCTGTTTACGTTATGTTGAATTGTTTTGAATGATGAAACTAAGTTAGCGTTTGACCATAAATTTTGGACTAAATTTTGGTAATTTATATTTTGAATATCCGTTTGGCCGTGAAATTTGATTAGTTTTTGAAAATATGATCCTCAAAATACTTTTCAAGTTCCCAAAAGGGGCTTTTTTAGTTTTTGGGACTTCCACTCACGAGACATCAAATGTATGGCCAAATACAACTTTAAGTTCTAAAACTAACAACTTCAAAGAGTTTCTACCTCCGTCTTCAAATCTATGGCCAAACGGGAGCTTAAGACTATACAAATTTGGTCTTTTTGCAAGTTCTGTTTTCAACCCACTTGTAGGTGATTTACTGCCTGTATTTCCATATTTTAAGATAATGGTAGCTACTTCTGTTATTTAAATTATAAGGTAACAATTTCATTAATTGGAAAGAGGAACCAATGAAGAAGTTCCTTAATAGATCTTTGTTTTGTTAGTTACATTTCGGTTCAAAAATATTCCCTTGTTTCAATTTGTTTGTTCTAATTTCCATTTTAGTCCGTTTAAGAAAGAACAGGTTTTTCCTTTTCTAGAAATTCGGTAATTCTAACTTTCTATATGATATGTTTAAGACTACAAAATTCAAAAGATATTTTTACTTTCTTGAATTCCGTGCCAAGTTAATACTAGACAAACAAATTGGCTAAATATGCCAGTCTTGCCTGCATGGTGAGTACTGTATGGCTGGCATAATTTGTGGAACCTAACAGGGTTGGCTCCTCGGCCGACCCTCCATTTAAAAATAATAATAATAATAAAATCAGGGGAGTACTACTTTTGGCAAAAAGAAAAAGGAAAAGTTGATGTTTCTATATTCATTTGAGCTGATTAGAACATATATCCAGGCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGC-AGGGATGGATAT-ATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATC-TTATATGCATTTTTCAGATGTTG</genome_strand>
        <mrna_strand>CAAAAATGGTGACATTAGCTTCTTCATCTCTCTGCAATTCCTCTTCTTCACTTATCCATTCCTCAAAAACATCTCTACCCAATTTCATTACATTCTCTTCCTCAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTAGCTGCTACTGAAGGCTCTGTTAACAAATCCAGTGGAAAAGATGAAGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCTTTCAAGTTCCATTCATTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCG...................................................................................................ATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCCTTGCTTGGGTTCTTTGTTTTCACTGGCATTCCCACTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCAGAGGAACAAGACCGCNAGGGATGGATATAATGTAACATCTAATATGCAATTTTTAGGTGATATCTGCAGCATCTTTATATGCA-TGTTCAGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319659" ref_strand="+" ref_description="SGN-E319659 [cTOB-12-D19]">
      <seq>tagcttcttcatctctctgcaattccccttcttcaattatccattcctcaaaaacatctatacccaatttcattacattctcttccttaagttattacaagaaaaggggaaaatcgcttgcaagtcgtagccttggaattgttgctgctactgaaggttctgttaacaaatctagtggaaaagatgaggaaaaacaagaagacccatcagttcctacatgggctaaacccggtacggatgagcctccaccatgggctagaaatgaagcacagaaagattcttcaagcattcaagttccattcggtgtttatttgcttgcttctgctgtcacagcaattgcagcgattgggtctattttcgagtacacgaatcagaaacctgtgtttggagttttgggttcagatagtgttttttatgctccattgcttgggttctttgtgttcactggcattcccacttctgcattcctttggttcaaatcagtacaagttgctaacaaggaggctgaggaacaagaccgcagggatggatatatgtaacatctaatatgcaatctttaggtgatatctgcagcatcttatatgcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="145777" stop="148000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146077" g_stop="146420" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146421" i_stop="146519" i_length="99">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146520" g_stop="146636" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="461" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146637" i_stop="147571" i_length="935">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147572" g_stop="147700" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="590" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E319659" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146077" e_stop="146420"/>
          <exon e_start="146520" e_stop="146636"/>
          <exon e_start="147572" e_stop="147700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCTTCATCTCTCTGCAATTCCCCTTCTTCAATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCGGTGAGTTTTTTTCTTTTAAATCAGGAATTTCATTTTCTAGTGGAGAAGTTTTTTGGGGTCATTATAAAGATTGATTCTTGATTGGGTTTTTGAGTGCAGATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCTGTAAGTTGATTTATTTTTTTCTCTGTTCATGTCTTTCTGCTGTTTACGTTATGTTGAATTGTTTTGAATGATGAAACTAAGTTAGCGTTTGACCATAAATTTTGGACTAAATTTTGGTAATTTATATTTTGAATATCCGTTTGGCCGTGAAATTTGATTAGTTTTTGAAAATATGATCCTCAAAATACTTTTCAAGTTCCCAAAAGGGGCTTTTTTAGTTTTTGGGACTTCCACTCACGAGACATCAAATGTATGGCCAAATACAACTTTAAGTTCTAAAACTAACAACTTCAAAGAGTTTCTACCTCCGTCTTCAAATCTATGGCCAAACGGGAGCTTAAGACTATACAAATTTGGTCTTTTTGCAAGTTCTGTTTTCAACCCACTTGTAGGTGATTTACTGCCTGTATTTCCATATTTTAAGATAATGGTAGCTACTTCTGTTATTTAAATTATAAGGTAACAATTTCATTAATTGGAAAGAGGAACCAATGAAGAAGTTCCTTAATAGATCTTTGTTTTGTTAGTTACATTTCGGTTCAAAAATATTCCCTTGTTTCAATTTGTTTGTTCTAATTTCCATTTTAGTCCGTTTAAGAAAGAACAGGTTTTTCCTTTTCTAGAAATTCGGTAATTCTAACTTTCTATATGATATGTTTAAGACTACAAAATTCAAAAGATATTTTTACTTTCTTGAATTCCGTGCCAAGTTAATACTAGACAAACAAATTGGCTAAATATGCCAGTCTTGCCTGCATGGTGAGTACTGTATGGCTGGCATAATTTGTGGAACCTAACAGGGTTGGCTCCTCGGCCGACCCTCCATTTAAAAATAATAATAATAATAAAATCAGGGGAGTACTACTTTTGGCAAAAAGAAAAAGGAAAAGTTGATGTTTCTATATTCATTTGAGCTGATTAGAACATATATCCAGGCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGCAGGGATGGATATATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATCTTATATGCATTTT</genome_strand>
        <mrna_strand>TAGCTTCTTCATCTCTCTGCAATTCCCCTTCTTCAATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGGTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCG...................................................................................................ATTGGGTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGCAGGGATGGATATATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATCTTATATGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737990" ref_strand="+" ref_description="SGN-E737990 [LC11DG07]">
      <seq>aattatccattcctcaaaaacatctatacccaatttcattacattctcttccttaagtttttacaagaaaaggggaaaatcgcttgcaagtcgtagccttggaattgttgctgctactgaaggttctgttaacaaatctagtggaaaagatgaggaaaaacaagaagacccatcagttcctacatgggctaaacccggtacggatgagcctccaccatgggctagaaatgaagcacagaaagattcttcaagcattcaagttccattcgttgtttatttgcttgcttctgctgtcacagcaattgcagcgattggttctattttcgagtacacgaatcagaaacctgtgtttggagttttgggttcagatagtgttttttatgctccattgcttgggttctttgtgttcactggcattcccacttctgcattcctttggttcaaatcagtacaagttgctaacaaggaggctgaggaacaagaccgcagggatggatatatgtaacatctaatatgcaatctttaggtgatatctgcagcatcttatatgcatttttcagatgttgttgatggttgtttcctaaaatactatcatcgcaaatgaatactttctcgaggtttgttctttctatagcagcatgagtgtaaaaattgtcttctcaataccagttattccgctttatcaattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="145811" stop="148138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146111" g_stop="146420" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146421" i_stop="146519" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146520" g_stop="146636" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="427" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146637" i_stop="147571" i_length="935">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147572" g_stop="147837" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="693" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E737990" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146111" e_stop="146420"/>
          <exon e_start="146520" e_stop="146636"/>
          <exon e_start="147572" e_stop="147837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCGGTGAGTTTTTTTCTTTTAAATCAGGAATTTCATTTTCTAGTGGAGAAGTTTTTTGGGGTCATTATAAAGATTGATTCTTGATTGGGTTTTTGAGTGCAGATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCTGTAAGTTGATTTATTTTTTTCTCTGTTCATGTCTTTCTGCTGTTTACGTTATGTTGAATTGTTTTGAATGATGAAACTAAGTTAGCGTTTGACCATAAATTTTGGACTAAATTTTGGTAATTTATATTTTGAATATCCGTTTGGCCGTGAAATTTGATTAGTTTTTGAAAATATGATCCTCAAAATACTTTTCAAGTTCCCAAAAGGGGCTTTTTTAGTTTTTGGGACTTCCACTCACGAGACATCAAATGTATGGCCAAATACAACTTTAAGTTCTAAAACTAACAACTTCAAAGAGTTTCTACCTCCGTCTTCAAATCTATGGCCAAACGGGAGCTTAAGACTATACAAATTTGGTCTTTTTGCAAGTTCTGTTTTCAACCCACTTGTAGGTGATTTACTGCCTGTATTTCCATATTTTAAGATAATGGTAGCTACTTCTGTTATTTAAATTATAAGGTAACAATTTCATTAATTGGAAAGAGGAACCAATGAAGAAGTTCCTTAATAGATCTTTGTTTTGTTAGTTACATTTCGGTTCAAAAATATTCCCTTGTTTCAATTTGTTTGTTCTAATTTCCATTTTAGTCCGTTTAAGAAAGAACAGGTTTTTCCTTTTCTAGAAATTCGGTAATTCTAACTTTCTATATGATATGTTTAAGACTACAAAATTCAAAAGATATTTTTACTTTCTTGAATTCCGTGCCAAGTTAATACTAGACAAACAAATTGGCTAAATATGCCAGTCTTGCCTGCATGGTGAGTACTGTATGGCTGGCATAATTTGTGGAACCTAACAGGGTTGGCTCCTCGGCCGACCCTCCATTTAAAAATAATAATAATAATAAAATCAGGGGAGTACTACTTTTGGCAAAAAGAAAAAGGAAAAGTTGATGTTTCTATATTCATTTGAGCTGATTAGAACATATATCCAGGCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGCAGGGATGGATATATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATCTTATATGCATTTTTCAGATGTTGTTGATGGTTGTTTCCTAAAATACTATCATCGCAAATGAATACTTTCTCGAGGTTTGTTCTTTCTAGAGCAGCATGAGTGTAAAAATTGTCTTCTCAATACCAGTTATTCCGCTTTATCAATTCTAAA</genome_strand>
        <mrna_strand>AATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTTTTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCG...................................................................................................ATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGCAGGGATGGATATATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATCTTATATGCATTTTTCAGATGTTGTTGATGGTTGTTTCCTAAAATACTATCATCGCAAATGAATACTTTCTCGAGGTTTGTTCTTTCTATAGCAGCATGAGTGTAAAAATTGTCTTCTCAATACCAGTTATTCCGCTTTATCAATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296346" ref_strand="+" ref_description="SGN-E296346 [cLET-19-H16]">
      <seq>gaaaatcgcttgcaagtcgtagccttggaattgttgctgctactgaaggttctgttaacaaatctagtggaaaagatgaggaaaaacaagaagacccatcagttcctacatgggctaaacccggtacggatgagcctccaccatgggctagaaatgaagcacagaaagattcttcaagcattcaagttccattcgttgtttatttgcttgcttctgctgtcacagcaattgcagcgattggttctattttcgagtacacgaatcagaaacctgtgtttggagttttgggttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020J02-qqTP9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0020J02.1" temp_strand="+" temp_description="C02SLm0020J02.1  AC226519.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0020J02 sequenced_by:kribb upload_account_name:korea">
        <position start="145885" stop="146876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146185" g_stop="146420" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146421" i_stop="146519" i_length="99">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146520" g_stop="146576" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="293" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020J02.1" gen_strand="+" ref_id="SGN-E296346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020J02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146185" e_stop="146420"/>
          <exon e_start="146520" e_stop="146576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCGGTGAGTTTTTTTCTTTTAAATCAGGAATTTCATTTTCTAGTGGAGAAGTTTTTTGGGGTCATTATAAAGATTGATTCTTGATTGGGTTTTTGAGTGCAGATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCA</genome_strand>
        <mrna_strand>GAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCG...................................................................................................ATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>207</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2405" PGL_stop="724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2405" e_stop="2311"/>
            <exon e_start="1968" e_stop="1889"/>
            <exon e_start="1013" e_stop="724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.867" acc_prob="0.998" e_score="0.895"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="0.950"/>
          <exon-only e_score="0.890"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="2405" e_stop="2311" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.867" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2310" i_stop="1969" i_length="342"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="1968" e_stop="1889" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="1888" i_stop="1014" i_length="875"/>
          </intron>
          <exon e_serial="3" e_score="0.890">
            <gDNA_exon_boundary e_start="1013" e_stop="724" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2405" stop="2311"/>
              <exon start="1968" stop="1889"/>
              <exon start="1013" stop="724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAATAGCCAAATATCATCAGTTTTTTTTCTTTCTTGTTTCTTCGATTCGTCTCTGTCGACCGATTGGATCCCTCAGAGCTAAAAACTTCGAA : AAGCCTTGCTTTCTTAGATGGCTAACCGAGCTCCTGTCAGAACTAACAACTCAGCCCTCATTGCCATGATCGCTGATGAG : GACACAATTACTGGATTTTTACTGGCTGGAGTTGGCAATGTTGATTTGAGGAGGAAAACAAATTACCTTATTGTGGATTCAAGTAAGTTCCAATTTTGGAATTACCAGTTCTCCAGTATTTTGAGGATCTTTCATTTACTTTCTGCTGTAGTTTATACTCTCCACCAAAATAGAATGGTTAGTTATTTTCCAAATTAATAAATTCTCTTCCAAATGGCTAGTTTCTTTTACCAATGTGGGCAAAGGAGCTTGAAATTTGGGGGAGGGAGTTTAGATGTTAAGTTTTTTTT</gDNA_template>
            <first_frame> S  K  *  P  N  I  I  S  F  F  S  F  L  F  L  R  F  V  S  V  D  R  L  D  P  S  E  L  K  T  S  K :   S  L  A  F  L  D  G  *  P  S  S  C  Q  N  *  Q  L  S  P  H  C  H  D  R  *  *   : G  H  N  Y  W  I  F  T  G  W  S  W  Q  C  *  F  E  E  E  N  K  L  P  Y  C  G  F  K  *  V  P  I  L  E  L  P  V  L  Q  Y  F  E  D  L  S  F  T  F  C  C  S  L  Y  S  P  P  K  *  N  G  *  L  F  S  K  L  I  N  S  L  P  N  G  *  F  L  L  P  M  W  A  K  E  L  E  I  W  G  R  E  F  R  C  *  V  F  F </first_frame>
            <second_frame>  A  N  S  Q  I  S  S  V  F  F  L  S  C  F  F  D  S  S  L  S  T  D  W  I  P  Q  S  *  K  L  R   : K  A  L  L  S  *  M  A  N  R  A  P  V  R  T  N  N  S  A  L  I  A  M  I  A  D  E  :  D  T  I  T  G  F  L  L  A  G  V  G  N  V  D  L  R  R  K  T  N  Y  L  I  V  D  S  S  K  F  Q  F  W  N  Y  Q  F  S  S  I  L  R  I  F  H  L  L  S  A  V  V  Y  T  L  H  Q  N  R  M  V  S  Y  F  P  N  *  *  I  L  F  Q  M  A  S  F  F  Y  Q  C  G  Q  R  S  L  K  F  G  G  G  S  L  D  V  K  F  F   </second_frame>
            <third_frame>   Q  I  A  K  Y  H  Q  F  F  F  F  L  V  S  S  I  R  L  C  R  P  I  G  S  L  R  A  K  N  F  E  :  K  P  C  F  L  R  W  L  T  E  L  L  S  E  L  T  T  Q  P  S  L  P  *  S  L  M  R :   T  Q  L  L  D  F  Y  W  L  E  L  A  M  L  I  *  G  G  K  Q  I  T  L  L  W  I  Q  V  S  S  N  F  G  I  T  S  S  P  V  F  *  G  S  F  I  Y  F  L  L  *  F  I  L  S  T  K  I  E  W  L  V  I  F  Q  I  N  K  F  S  S  K  W  L  V  S  F  T  N  V  G  K  G  A  *  N  L  G  E  G  V  *  M  L  S  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1951" stop="1889"/>
                    <exon start="1013" stop="816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MANRAPVRTNNSALIAMIADEDTITGFLLAGVGNVDLRRKTNYLIVDSSKFQFWNYQFSSILRIFHLLSAVVYTLHQNRMVSYFPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3079" PGL_stop="6655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3079" e_stop="3238"/>
            <exon e_start="5776" e_stop="5844"/>
            <exon e_start="5947" e_stop="6053"/>
            <exon e_start="6136" e_stop="6655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.017" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.882" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3079" e_stop="3238" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.017">
            <gDNA_intron_boundary i_start="3239" i_stop="5775" i_length="2537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5776" e_stop="5844" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.902">
            <gDNA_intron_boundary i_start="5845" i_stop="5946" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5947" e_stop="6053" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.882">
            <gDNA_intron_boundary i_start="6054" i_stop="6135" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6136" e_stop="6655" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3079" stop="3238"/>
              <exon start="5776" stop="5844"/>
              <exon start="5947" stop="6053"/>
              <exon start="6136" stop="6655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3098" stop="3238"/>
              <exon start="5776" stop="5844"/>
              <exon start="5947" stop="6053"/>
              <exon start="6136" stop="6178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6143" stop="6517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278296" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCACCATTCATTTGTTGATTGATGATGTTGATGTGCAAAGGGGTATGGCCAAGCAGCTCATCCGTTGTTCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAAGCTAGCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAA : ATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAG : TTAAGATTGTGAAGGATGAAGTGACTAAGAGATCAAAGGGATATGCTTTTATTCAGTACACTTCTCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAG : TACATCAATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTACAAAGAAAGACTTTGGCAGATACCCGAGAAGTTGTGGACCACCTGTGGAGAGATTACCATCTGAAAATGAAGTTCCAGACCTAAAAGAAAACTGCTAAGGTAATGTTTACGCTAGTGTTAGAGTGGCAATCATTGATAGGTGCATGACAGTTCCACAAGTCATCATTCTTGAAACTACTGTGATGCAGCTTTGGTTCGACTTGATAAAACTTCTATTGCGTAAAATTTCACTCTTAGGTCACTCCTACAGGTTACAGGACTAGTTTACTTGTTCTGTCATCGCATTCTGTGTTTTGCATGTAAACTTCACACACATATATATTGTGTTTGTTCTATTAGGCATGGCGCGTTGCATGTCAGTCCAGGTCAATTACTTCATACTAGAAGAGGCTAAGTGTACTTCCGGTCATCTTTCAAAATCTGTACTTAGAATCATGTATATTAAATCGCAAGACTTGTGCTTTCTCAACTTGATGT</gDNA_template>
            <first_frame> K  P  P  F  I  C  *  L  M  M  L  M  C  K  G  V  W  P  S  S  S  S  V  V  L  L  Q  T  P  N  G  H  K  S  F  K  T  Q  A  S  F  S  S  Y  P  L  A  S  K  V  M  V  R   : N  L  S  Y  S  T  D  E  S  C  L  E  K  I  F  S  N  F  G  H  V  A  E   : V  K  I  V  K  D  E  V  T  K  R  S  K  G  Y  A  F  I  Q  Y  T  S  Q  E  N  A  M  L  A  L  D  S  M  D  H  K  :  Y  I  N  G  R  V  I  F  V  E  L  A  K  P  T  K  K  D  F  G  R  Y  P  R  S  C  G  P  P  V  E  R  L  P  S  E  N  E  V  P  D  L  K  E  N  C  *  G  N  V  Y  A  S  V  R  V  A  I  I  D  R  C  M  T  V  P  Q  V  I  I  L  E  T  T  V  M  Q  L  W  F  D  L  I  K  L  L  L  R  K  I  S  L  L  G  H  S  Y  R  L  Q  D  *  F  T  C  S  V  I  A  F  C  V  L  H  V  N  F  T  H  I  Y  I  V  F  V  L  L  G  M  A  R  C  M  S  V  Q  V  N  Y  F  I  L  E  E  A  K  C  T  S  G  H  L  S  K  S  V  L  R  I  M  Y  I  K  S  Q  D  L  C  F  L  N  L  M  </first_frame>
            <second_frame>  N  H  H  S  F  V  D  *  *  C  *  C  A  K  G  Y  G  Q  A  A  H  P  L  F  C  C  R  H  Q  M  D  T  N  P  S  K  P  K  L  A  F  L  A  T  L  L  P  A  K  L  W  L  E  :  I  Y  H  T  P  L  M  K  V  V  W  R  K  Y  F  Q  I  L  V  M  L  L  K  :  L  R  L  *  R  M  K  *  L  R  D  Q  R  D  M  L  L  F  S  T  L  L  K  K  M  P  C  L  L  L  I  A  W  I  T  S :   T  S  M  A  G  L  Y  L  W  N  L  Q  S  L  Q  R  K  T  L  A  D  T  R  E  V  V  D  H  L  W  R  D  Y  H  L  K  M  K  F  Q  T  *  K  K  T  A  K  V  M  F  T  L  V  L  E  W  Q  S  L  I  G  A  *  Q  F  H  K  S  S  F  L  K  L  L  *  C  S  F  G  S  T  *  *  N  F  Y  C  V  K  F  H  S  *  V  T  P  T  G  Y  R  T  S  L  L  V  L  S  S  H  S  V  F  C  M  *  T  S  H  T  Y  I  L  C  L  F  Y  *  A  W  R  V  A  C  Q  S  R  S  I  T  S  Y  *  K  R  L  S  V  L  P  V  I  F  Q  N  L  Y  L  E  S  C  I  L  N  R  K  T  C  A  F  S  T  *  C </second_frame>
            <third_frame>   T  T  I  H  L  L  I  D  D  V  D  V  Q  R  G  M  A  K  Q  L  I  R  C  S  V  A  D  T  K  W  T  Q  I  L  Q  N  P  S  *  L  F  *  L  P  S  C  Q  Q  S  Y  G  *  K :   S  I  I  L  H  *  *  K  L  S  G  E  N  I  F  K  F  W  S  C  C  *  S :   *  D  C  E  G  *  S  D  *  E  I  K  G  I  C  F  Y  S  V  H  F  S  R  K  C  H  A  C  S  *  *  H  G  S  Q   : V  H  Q  W  Q  G  Y  I  C  G  T  C  K  A  Y  K  E  R  L  W  Q  I  P  E  K  L  W  T  T  C  G  E  I  T  I  *  K  *  S  S  R  P  K  R  K  L  L  R  *  C  L  R  *  C  *  S  G  N  H  *  *  V  H  D  S  S  T  S  H  H  S  *  N  Y  C  D  A  A  L  V  R  L  D  K  T  S  I  A  *  N  F  T  L  R  S  L  L  Q  V  T  G  L  V  Y  L  F  C  H  R  I  L  C  F  A  C  K  L  H  T  H  I  Y  C  V  C  S  I  R  H  G  A  L  H  V  S  P  G  Q  L  L  H  T  R  R  G  *  V  Y  F  R  S  S  F  K  I  C  T  *  N  H  V  Y  *  I  A  R  L  V  L  S  Q  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3100" stop="3238"/>
                    <exon start="5776" stop="5844"/>
                    <exon start="5947" stop="6053"/>
                    <exon start="6136" stop="6276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMMLMCKGVWPSSSSVVLLQTPNGHKSFKTQASFSSYPLASKVMVRNLSYSTDESCLEKIFSNFGHVAEVKIVKDEVTKRSKGYAFIQYTSQENAMLALDSMDHKYINGRVIFVELAKPTKKDFGRYPRSCGPPVERLPSENEVPDLKENC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6442" stop="6654"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTCSVIAFCVLHVNFTHIYIVFVLLGMARCMSVQVNYFILEEAKCTSGHLSKSVLRIMYIKSQDLCFLNLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3121" e_stop="3238"/>
            <exon e_start="5776" e_stop="5844"/>
            <exon e_start="5947" e_stop="6517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.017" e_score="0.924"/>
          <exon-intron don_prob="0.995" acc_prob="0.902" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="3121" e_stop="3238" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.017">
            <gDNA_intron_boundary i_start="3239" i_stop="5775" i_length="2537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5776" e_stop="5844" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.902">
            <gDNA_intron_boundary i_start="5845" i_stop="5946" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="5947" e_stop="6517" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3121" stop="3238"/>
              <exon start="5776" stop="5844"/>
              <exon start="5947" stop="6209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278455" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6143" stop="6517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278296" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGTATGGCCAAGCAGCTCATCCGTTGTTCTGTTGCAGACACCAAATGGACACAAATCCTTCAAAACCCAAGCTAGCTTTTCTAGCTACCCTCTTGCCAGCAAAGTTATGGTTAGAA : ATCTATCATACTCCACTGATGAAAGTTGTCTGGAGAAAATATTTTCAAATTTTGGTCATGTTGCTGAAG : TTAAGATTGTGAAGGATGAAGTGACTAAGAGATCAAAGGGATATGCTTTTATTCAGTACACTTCTCAAGAAAATGCCATGCTTGCTCTTGATAGCATGGATCACAAGGTTATACTCTATAAATTTGTTTTGGATTTTTAATTCCCTTCACAGTATGTCTTCTTCGTCACGTTCTCTCTTCCCTTGTCAGTACATCAATGGCAGGGTTATATTTGTGGAACTTGCAAAGCCTACAAAGAAAGACTTTGGCAGATACCCGAGAAGTTGTGGACCACCTGTGGAGAGATTACCATCTGAAAATGAAGTTCCAGACCTAAAAGAAAACTGCTAAGGTAATGTTTACGCTAGTGTTAGAGTGGCAATCATTGATAGGTGCATGACAGTTCCACAAGTCATCATTCTTGAAACTACTGTGATGCAGCTTTGGTTCGACTTGATAAAACTTCTATTGCGTAAAATTTCACTCTTAGGTCACTCCTACAGGTTACAGGACTAGTTTACTTGTTCTGTCATCGCATTCTGTGTTTTGCATGTAAACTTCACACACATATATATTGTGTTTGTTCTATTAG</gDNA_template>
            <first_frame> G  V  W  P  S  S  S  S  V  V  L  L  Q  T  P  N  G  H  K  S  F  K  T  Q  A  S  F  S  S  Y  P  L  A  S  K  V  M  V  R   : N  L  S  Y  S  T  D  E  S  C  L  E  K  I  F  S  N  F  G  H  V  A  E   : V  K  I  V  K  D  E  V  T  K  R  S  K  G  Y  A  F  I  Q  Y  T  S  Q  E  N  A  M  L  A  L  D  S  M  D  H  K  V  I  L  Y  K  F  V  L  D  F  *  F  P  S  Q  Y  V  F  F  V  T  F  S  L  P  L  S  V  H  Q  W  Q  G  Y  I  C  G  T  C  K  A  Y  K  E  R  L  W  Q  I  P  E  K  L  W  T  T  C  G  E  I  T  I  *  K  *  S  S  R  P  K  R  K  L  L  R  *  C  L  R  *  C  *  S  G  N  H  *  *  V  H  D  S  S  T  S  H  H  S  *  N  Y  C  D  A  A  L  V  R  L  D  K  T  S  I  A  *  N  F  T  L  R  S  L  L  Q  V  T  G  L  V  Y  L  F  C  H  R  I  L  C  F  A  C  K  L  H  T  H  I  Y  C  V  C  S  I   </first_frame>
            <second_frame>  G  Y  G  Q  A  A  H  P  L  F  C  C  R  H  Q  M  D  T  N  P  S  K  P  K  L  A  F  L  A  T  L  L  P  A  K  L  W  L  E  :  I  Y  H  T  P  L  M  K  V  V  W  R  K  Y  F  Q  I  L  V  M  L  L  K  :  L  R  L  *  R  M  K  *  L  R  D  Q  R  D  M  L  L  F  S  T  L  L  K  K  M  P  C  L  L  L  I  A  W  I  T  R  L  Y  S  I  N  L  F  W  I  F  N  S  L  H  S  M  S  S  S  S  R  S  L  F  P  C  Q  Y  I  N  G  R  V  I  F  V  E  L  A  K  P  T  K  K  D  F  G  R  Y  P  R  S  C  G  P  P  V  E  R  L  P  S  E  N  E  V  P  D  L  K  E  N  C  *  G  N  V  Y  A  S  V  R  V  A  I  I  D  R  C  M  T  V  P  Q  V  I  I  L  E  T  T  V  M  Q  L  W  F  D  L  I  K  L  L  L  R  K  I  S  L  L  G  H  S  Y  R  L  Q  D  *  F  T  C  S  V  I  A  F  C  V  L  H  V  N  F  T  H  I  Y  I  V  F  V  L  L  </second_frame>
            <third_frame>   G  M  A  K  Q  L  I  R  C  S  V  A  D  T  K  W  T  Q  I  L  Q  N  P  S  *  L  F  *  L  P  S  C  Q  Q  S  Y  G  *  K :   S  I  I  L  H  *  *  K  L  S  G  E  N  I  F  K  F  W  S  C  C  *  S :   *  D  C  E  G  *  S  D  *  E  I  K  G  I  C  F  Y  S  V  H  F  S  R  K  C  H  A  C  S  *  *  H  G  S  Q  G  Y  T  L  *  I  C  F  G  F  L  I  P  F  T  V  C  L  L  R  H  V  L  S  S  L  V  S  T  S  M  A  G  L  Y  L  W  N  L  Q  S  L  Q  R  K  T  L  A  D  T  R  E  V  V  D  H  L  W  R  D  Y  H  L  K  M  K  F  Q  T  *  K  K  T  A  K  V  M  F  T  L  V  L  E  W  Q  S  L  I  G  A  *  Q  F  H  K  S  S  F  L  K  L  L  *  C  S  F  G  S  T  *  *  N  F  Y  C  V  K  F  H  S  *  V  T  P  T  G  Y  R  T  S  L  L  V  L  S  S  H  S  V  F  C  M  *  T  S  H  T  Y  I  L  C  L  F  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3121" stop="3238"/>
                    <exon start="5776" stop="5844"/>
                    <exon start="5947" stop="6086"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVWPSSSSVVLLQTPNGHKSFKTQASFSSYPLASKVMVRNLSYSTDESCLEKIFSNFGHVAEVKIVKDEVTKRSKGYAFIQYTSQENAMLALDSMDHKVILYKFVLDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5971" stop="6276"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRDQRDMLLFSTLLKKMPCLLLIAWITRLYSINLFWIFNSLHSMSSSSRSLFPCQYINGRVIFVELAKPTKKDFGRYPRSCGPPVERLPSENEVPDLKENC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3970" e_stop="4457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="3970" e_stop="4457" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3970" stop="4457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATCAGATTGAAAGTTTACAGCTTGAATCAATAATACGGTGTCTACTATCTATGTGTAGTGTGGATGATAGTTTTTGAACTTGTCTTCGTTATATGTTTCATCCATGTCCTATAAAAGCTAAACTTTTAAGACTTTTTGAAGCTTGGATACAACATCTGTTGGTCATAGCTGAAAAACTCTATTGACTTTGTAGTATCTTTTCCAAGAAACGGTGGGCGGAACTTAAATCAAAGAGAGAATTAAGTTTGTTTAGGATCTCTATTGGTGGAATTTGTTGTCGTCTGGGTACTGCTTGACACTAGTAATGTACAACCCACATTGCTTGCTTGTTATTCTGATCAAATAGTGATGTAGTAACTAGTGATAAGCTATGTTGCTTGAACTCTTCAAAAATGTTGACAGCTGCGTGTCCGATTCTCCAAAAATAGTGTATTTTTGAAGAATCCGACACGGATGTTGCATCAAAAGCAAAGAGTTCCGGAAACT</gDNA_template>
            <first_frame> A  S  D  *  K  F  T  A  *  I  N  N  T  V  S  T  I  Y  V  *  C  G  *  *  F  L  N  L  S  S  L  Y  V  S  S  M  S  Y  K  S  *  T  F  K  T  F  *  S  L  D  T  T  S  V  G  H  S  *  K  T  L  L  T  L  *  Y  L  F  Q  E  T  V  G  G  T  *  I  K  E  R  I  K  F  V  *  D  L  Y  W  W  N  L  L  S  S  G  Y  C  L  T  L  V  M  Y  N  P  H  C  L  L  V  I  L  I  K  *  *  C  S  N  *  *  *  A  M  L  L  E  L  F  K  N  V  D  S  C  V  S  D  S  P  K  I  V  Y  F  *  R  I  R  H  G  C  C  I  K  S  K  E  F  R  K   </first_frame>
            <second_frame>  H  Q  I  E  S  L  Q  L  E  S  I  I  R  C  L  L  S  M  C  S  V  D  D  S  F  *  T  C  L  R  Y  M  F  H  P  C  P  I  K  A  K  L  L  R  L  F  E  A  W  I  Q  H  L  L  V  I  A  E  K  L  Y  *  L  C  S  I  F  S  K  K  R  W  A  E  L  K  S  K  R  E  L  S  L  F  R  I  S  I  G  G  I  C  C  R  L  G  T  A  *  H  *  *  C  T  T  H  I  A  C  L  L  F  *  S  N  S  D  V  V  T  S  D  K  L  C  C  L  N  S  S  K  M  L  T  A  A  C  P  I  L  Q  K  *  C  I  F  E  E  S  D  T  D  V  A  S  K  A  K  S  S  G  N  </second_frame>
            <third_frame>   I  R  L  K  V  Y  S  L  N  Q  *  Y  G  V  Y  Y  L  C  V  V  W  M  I  V  F  E  L  V  F  V  I  C  F  I  H  V  L  *  K  L  N  F  *  D  F  L  K  L  G  Y  N  I  C  W  S  *  L  K  N  S  I  D  F  V  V  S  F  P  R  N  G  G  R  N  L  N  Q  R  E  N  *  V  C  L  G  S  L  L  V  E  F  V  V  V  W  V  L  L  D  T  S  N  V  Q  P  T  L  L  A  C  Y  S  D  Q  I  V  M  *  *  L  V  I  S  Y  V  A  *  T  L  Q  K  C  *  Q  L  R  V  R  F  S  K  N  S  V  F  L  K  N  P  T  R  M  L  H  Q  K  Q  R  V  P  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020J02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10534" PGL_stop="17548"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10534" e_stop="10785"/>
            <exon e_start="11147" e_stop="11260"/>
            <exon e_start="13200" e_stop="13295"/>
            <exon e_start="13561" e_stop="13603"/>
            <exon e_start="13898" e_stop="14053"/>
            <exon e_start="14337" e_stop="14417"/>
            <exon e_start="16908" e_stop="17006"/>
            <exon e_start="17157" e_stop="17548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.264" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10534" e_stop="10785" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11147" e_stop="11260" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13200" e_stop="13295" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.966">
            <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13561" e_stop="13603" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13898" e_stop="14053" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14337" e_stop="14417" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.264">
            <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16908" e_stop="17006" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150"/>
          </intron>
          <exon e_serial="8" e_score="0.913">
            <gDNA_exon_boundary e_start="17157" e_stop="17548" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10534" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14053"/>
              <exon start="14337" stop="14410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10554" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14053"/>
              <exon start="14337" stop="14417"/>
              <exon start="16908" stop="17006"/>
              <exon start="17157" stop="17192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10555" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10559" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="13951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10560" stop="10785"/>
              <exon start="11147" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10566" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="13999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10567" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14053"/>
              <exon start="14337" stop="14417"/>
              <exon start="16908" stop="17006"/>
              <exon start="17157" stop="17506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10572" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14053"/>
              <exon start="14337" stop="14417"/>
              <exon start="16908" stop="17006"/>
              <exon start="17157" stop="17262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10576" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10606" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="13949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13205" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14053"/>
              <exon start="14337" stop="14417"/>
              <exon start="16908" stop="16954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14000" stop="14053"/>
              <exon start="14337" stop="14417"/>
              <exon start="16908" stop="17006"/>
              <exon start="17157" stop="17548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17310" stop="17535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTAAGCGTTACAATTGTATTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT : ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG : ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC : TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT : GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG : GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG : ATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATG : GGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGTGACGATGATGAAGAATACTACGATGGTGAAGATGAAGAATAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGATTTGTCTAAATATGTTCTTGAAAATTCTATTTTATTTT</gDNA_template>
            <first_frame> N  L  S  V  T  I  V  F  G  E  E  R  E  K  R  E  G  R  *  Y  Y  S  N  G  E  W  R  R  R  R  R  R  S  T  I  R  T  T  T  T  A  A  A  T  V  E  A  D  P  T  E  S  T  A  N  R  S  A  G  S  Y  L  R  R  R  N  L  R  S  L  S  L  R  T  C  S  R  P  R  T  S  *  E  T  :  I  A  *  R  S  A  S  C  W  M  L  Q  *  *  N  H  S  Q  I  Q  G  K  N  C  Y  E  *  K  G  A  I  *  I  F  A  P  L  Q  :  M  G  *  *  S  Y  S  R  C  A  L  G  C  N  P  R  V  H  *  E  T  S  D  *  L  C  G  T  *  R  S  S  :  L  C  G  C  K  W  S  W  K  *  C  L  R  V   : C  *  V  H  W  *  V  L  G  D  Q  A  D  *  W  N  I  Y  F  R  F  N  N  E  D  C  K  R  L  Q  *  I  C  D  A  Q  F  G  Q  R  I  F  K  N  G  S  W  S  E  L  R  E   : G  K  K  A  E  S  E  Q  G  F  E  K  V  A  *  E  S  K  E  T  T  R  E  S  G  R  E   : D  T  N  S  S  K  A  S  K  Y  L  G  G  E  C  *  *  I  G  C  W  F  P  *  D  V  *  R  G  L  P  Q  N   : G  N  C  H  K  R  P  N  S  R  T  D  E  D  Q  E  Y  K  R  A  S  I  *  Q  R  R  G  *  *  *  I  *  L  L  L  R  E  Q  *  R  *  *  R  I  L  R  W  *  R  *  R  I  G  L  F  T  F  S  C  Y  V  V  M  *  N  V  V  Y  G  S  S  W  M  K  M  Y  Y  V  L  T  F  G  C  A  C  D  M  R  V  L  F  W  *  N  V  V  A  I  S  C  V  V  N  R  D  Q  A  *  S  C  T  I  T  L  S  I  R  V  I  C  L  N  M  F  L  K  I  L  F  Y  F </first_frame>
            <second_frame>  I  *  A  L  Q  L  Y  L  E  K  R  E  R  R  E  K  G  D  N  T  I  V  M  E  N  G  G  G  G  G  E  D  P  Q  L  E  P  P  P  Q  P  Q  R  R  L  K  P  I  P  P  N  P  P  P  T  D  R  P  A  R  I  Y  A  D  G  I  Y  D  L  F  H  F  G  H  A  R  A  L  E  Q  A  K  K  L :   L  P  N  A  Q  L  L  V  G  C  C  N  D  E  I  T  H  K  F  K  G  K  T  V  M  N  E  K  E  R  Y  E  S  L  R  H  C  R :   W  V  D  E  V  I  P  D  A  P  W  V  V  T  P  E  F  I  E  K  H  R  I  D  Y  V  A  H  D  A  L  P :   Y  A  D  A  S  G  A  G  N  D  V  Y  E  Y  :  V  K  S  I  G  K  F  L  E  T  K  R  T  D  G  I  S  T  S  D  L  I  M  R  I  V  K  D  Y  N  E  Y  V  M  R  N  L  D  R  G  Y  S  R  T  D  L  G  L  S  Y  V  K  :  E  K  R  L  R  V  N  R  G  L  K  K  L  H  E  R  V  K  K  Q  Q  E  K  V  E  E  K  :  I  Q  T  V  A  K  H  R  N  I  W  V  E  N  A  D  R  L  V  A  G  F  L  E  M  F  E  E  G  C  H  K  M  :  G  T  V  I  R  D  R  I  Q  E  Q  M  R  T  K  S  I  K  G  L  L  Y  D  K  E  E  D  D  D  E  Y  D  Y  Y  Y  G  S  S  D  D  D  E  E  Y  Y  D  G  E  D  E  E  *  G  C  S  L  S  H  V  M  W  *  C  K  M  *  F  M  D  Q  V  G  *  R  C  I  M  S  *  R  L  D  A  R  V  I  C  V  F  Y  F  G  R  M  *  W  Q  L  V  V  L  *  T  V  I  K  H  S  L  V  P  *  R  C  Q  S  E  *  F  V  *  I  C  S  *  K  F  Y  F  I   </second_frame>
            <third_frame>   F  K  R  Y  N  C  I  W  R  R  E  R  E  E  R  R  A  I  I  L  *  *  W  R  M  E  E  E  E  E  K  I  H  N  *  N  H  H  H  S  R  S  D  G  *  S  R  S  H  R  I  H  R  Q  Q  I  G  R  L  V  F  T  P  T  E  S  T  I  S  F  T  S  D  M  L  A  P  S  N  K  L  R  N   : Y  C  L  T  L  S  F  L  L  D  A  A  M  M  K  S  L  T  N  S  R  E  K  L  L  *  M  K  R  S  D  M  N  L  C  A  T  A   : D  G  L  M  K  L  F  Q  M  R  L  G  L  *  P  Q  S  S  L  R  N  I  G  L  T  M  W  H  M  T  L  F   : L  M  R  M  Q  V  E  L  E  M  M  F  T  S  M :   L  S  P  L  V  S  S  W  R  P  S  G  L  M  E  Y  L  L  Q  I  *  *  *  G  L  *  K  T  T  M  N  M  *  C  A  I  W  T  E  D  I  Q  E  R  I  L  V  *  A  T  *  R :   K  K  G  *  E  *  T  G  V  *  K  S  C  M  R  E  *  R  N  N  K  R  K  W  K  R  R :   Y  K  Q  *  Q  S  I  E  I  F  G  W  R  M  L  I  D  W  L  L  V  S  L  R  C  L  K  R  V  A  T  K  W :   E  L  S  *  E  T  E  F  K  N  R  *  G  P  R  V  *  K  G  F  Y  M  T  K  K  R  M  M  M  N  M  T  T  I  T  G  A  V  T  M  M  K  N  T  T  M  V  K  M  K  N  R  V  V  H  F  L  M  L  C  G  D  V  K  C  S  L  W  I  K  L  D  E  D  V  L  C  P  N  V  W  M  R  V  *  Y  A  C  F  I  L  V  E  C  S  G  N  *  L  C  C  K  P  *  S  S  I  V  L  Y  H  N  A  V  N  Q  S  D  L  S  K  Y  V  L  E  N  S  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10541" stop="10785"/>
                    <exon start="11147" stop="11260"/>
                    <exon start="13200" stop="13295"/>
                    <exon start="13561" stop="13603"/>
                    <exon start="13898" stop="14053"/>
                    <exon start="14337" stop="14417"/>
                    <exon start="16908" stop="17006"/>
                    <exon start="17157" stop="17312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLYLEKRERREKGDNTIVMENGGGGGEDPQLEPPPQPQRRLKPIPPNPPPTDRPARIYADGIYDLFHFGHARALEQAKKLLPNAQLLVGCCNDEITHKFKGKTVMNEKERYESLRHCRWVDEVIPDAPWVVTPEFIEKHRIDYVAHDALPYADASGAGNDVYEYVKSIGKFLETKRTDGISTSDLIMRIVKDYNEYVMRNLDRGYSRTDLGLSYVKEKRLRVNRGLKKLHERVKKQQEKVEEKIQTVAKHRNIWVENADRLVAGFLEMFEEGCHKMGTVIRDRIQEQMRTKSIKGLLYDKEEDDDEYDYYYGSSDDDEEYYDGEDEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10555" e_stop="10785"/>
            <exon e_start="11147" e_stop="11260"/>
            <exon e_start="13200" e_stop="13295"/>
            <exon e_start="13561" e_stop="13603"/>
            <exon e_start="13898" e_stop="14176"/>
            <exon e_start="14227" e_stop="14627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.957"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10555" e_stop="10785" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11147" e_stop="11260" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13200" e_stop="13295" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.966">
            <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13561" e_stop="13603" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13604" i_stop="13897" i_length="294"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="13898" e_stop="14176" e_length="279"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14177" i_stop="14226" i_length="50"/>
          </intron>
          <exon e_serial="6" e_score="0.880">
            <gDNA_exon_boundary e_start="14227" e_stop="14627" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10555" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10559" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="13951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10560" stop="10785"/>
              <exon start="11147" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10566" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="13999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10576" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="14000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10606" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13603"/>
              <exon start="13898" stop="13949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13898" stop="14176"/>
              <exon start="14227" stop="14627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGAGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT : ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG : ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC : TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGAGTAT : GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAGGTATACTCTTTAGTGTTTTGATTTGGTGATGTAGTAATACCTTACCTTTCTGAGGAAAGAATTGTTCTTGTTTTGCAAATGCAATGAAAAGAAAAAGGGTGCTAATTGAATTATGTAGACTTT : TTTTTTTATTCCTCACTAATAATAGTAGAATCAATGGCGCAGAGTCAAAGATTACATTTTCTTTCATTATTTGCTTTGCCAGGTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAGGTATATTCTTAAGTATTTGTCTGCTTTTCATTTCTCTATTTCGAATACAAACTTGTCAGAAGAGTCTCCAATCTCTATGGAATATGTGGTTTTTGAATAAAGTTTGGCAATTATCTGGAAAAAGCAAGGAAAAAGGATATTGAGATCTATGTCTTCTGTCATTTATGCAAATTATTTTTTTAAAAAGAAGGTAACCATATTTTATATAAC</gDNA_template>
            <first_frame> F  G  E  E  R  E  K  R  E  G  R  *  Y  Y  S  N  G  E  W  R  R  R  R  R  R  S  T  I  R  T  T  T  T  A  A  A  T  V  E  A  D  P  T  E  S  T  A  N  R  S  A  G  S  Y  L  R  R  R  N  L  R  S  L  S  L  R  T  C  S  R  P  R  T  S  *  E  T  :  I  A  *  R  S  A  S  C  W  M  L  Q  *  *  N  H  S  Q  I  Q  G  K  N  C  Y  E  *  K  G  A  I  *  I  F  A  P  L  Q  :  M  G  *  *  S  Y  S  R  C  A  L  G  C  N  P  R  V  H  *  E  T  S  D  *  L  C  G  T  *  R  S  S  :  L  C  G  C  K  W  S  W  K  *  C  L  R  V   : C  *  V  H  W  *  V  L  G  D  Q  A  D  *  W  N  I  Y  F  R  F  N  N  E  D  C  K  R  L  Q  *  I  C  D  A  Q  F  G  Q  R  I  F  K  N  G  S  W  S  E  L  R  E  G  I  L  F  S  V  L  I  W  *  C  S  N  T  L  P  F  *  G  K  N  C  S  C  F  A  N  A  M  K  R  K  R  V  L  I  E  L  C  R  L   : F  F  L  F  L  T  N  N  S  R  I  N  G  A  E  S  K  I  T  F  S  F  I  I  C  F  A  R  Y  *  L  H  H  C  L  F  *  E  K  R  L  R  V  N  R  G  L  K  K  L  H  E  R  V  K  K  Q  Q  E  K  V  E  E  K  V  Y  S  *  V  F  V  C  F  S  F  L  Y  F  E  Y  K  L  V  R  R  V  S  N  L  Y  G  I  C  G  F  *  I  K  F  G  N  Y  L  E  K  A  R  K  K  D  I  E  I  Y  V  F  C  H  L  C  K  L  F  F  *  K  E  G  N  H  I  L  Y  N </first_frame>
            <second_frame>  L  E  K  R  E  R  R  E  K  G  D  N  T  I  V  M  E  N  G  G  G  G  G  E  D  P  Q  L  E  P  P  P  Q  P  Q  R  R  L  K  P  I  P  P  N  P  P  P  T  D  R  P  A  R  I  Y  A  D  G  I  Y  D  L  F  H  F  G  H  A  R  A  L  E  Q  A  K  K  L :   L  P  N  A  Q  L  L  V  G  C  C  N  D  E  I  T  H  K  F  K  G  K  T  V  M  N  E  K  E  R  Y  E  S  L  R  H  C  R :   W  V  D  E  V  I  P  D  A  P  W  V  V  T  P  E  F  I  E  K  H  R  I  D  Y  V  A  H  D  A  L  P :   Y  A  D  A  S  G  A  G  N  D  V  Y  E  Y  :  V  K  S  I  G  K  F  L  E  T  K  R  T  D  G  I  S  T  S  D  L  I  M  R  I  V  K  D  Y  N  E  Y  V  M  R  N  L  D  R  G  Y  S  R  T  D  L  G  L  S  Y  V  K  V  Y  S  L  V  F  *  F  G  D  V  V  I  P  Y  L  S  E  E  R  I  V  L  V  L  Q  M  Q  *  K  E  K  G  C  *  L  N  Y  V  D  F  :  F  F  Y  S  S  L  I  I  V  E  S  M  A  Q  S  Q  R  L  H  F  L  S  L  F  A  L  P  G  I  N  F  I  I  A  S  F  R  K  K  G  *  E  *  T  G  V  *  K  S  C  M  R  E  *  R  N  N  K  R  K  W  K  R  R  Y  I  L  K  Y  L  S  A  F  H  F  S  I  S  N  T  N  L  S  E  E  S  P  I  S  M  E  Y  V  V  F  E  *  S  L  A  I  I  W  K  K  Q  G  K  R  I  L  R  S  M  S  S  V  I  Y  A  N  Y  F  F  K  K  K  V  T  I  F  Y  I   </second_frame>
            <third_frame>   W  R  R  E  R  E  E  R  R  A  I  I  L  *  *  W  R  M  E  E  E  E  E  K  I  H  N  *  N  H  H  H  S  R  S  D  G  *  S  R  S  H  R  I  H  R  Q  Q  I  G  R  L  V  F  T  P  T  E  S  T  I  S  F  T  S  D  M  L  A  P  S  N  K  L  R  N   : Y  C  L  T  L  S  F  L  L  D  A  A  M  M  K  S  L  T  N  S  R  E  K  L  L  *  M  K  R  S  D  M  N  L  C  A  T  A   : D  G  L  M  K  L  F  Q  M  R  L  G  L  *  P  Q  S  S  L  R  N  I  G  L  T  M  W  H  M  T  L  F   : L  M  R  M  Q  V  E  L  E  M  M  F  T  S  M :   L  S  P  L  V  S  S  W  R  P  S  G  L  M  E  Y  L  L  Q  I  *  *  *  G  L  *  K  T  T  M  N  M  *  C  A  I  W  T  E  D  I  Q  E  R  I  L  V  *  A  T  *  R  Y  T  L  *  C  F  D  L  V  M  *  *  Y  L  T  F  L  R  K  E  L  F  L  F  C  K  C  N  E  K  K  K  G  A  N  *  I  M  *  T  F :   F  F  I  P  H  *  *  *  *  N  Q  W  R  R  V  K  D  Y  I  F  F  H  Y  L  L  C  Q  V  L  T  S  S  L  P  L  L  G  K  K  A  E  S  E  Q  G  F  E  K  V  A  *  E  S  K  E  T  T  R  E  S  G  R  E  G  I  F  L  S  I  C  L  L  F  I  S  L  F  R  I  Q  T  C  Q  K  S  L  Q  S  L  W  N  M  W  F  L  N  K  V  W  Q  L  S  G  K  S  K  E  K  G  Y  *  D  L  C  L  L  S  F  M  Q  I  I  F  L  K  R  R  *  P  Y  F  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10556" stop="10785"/>
                    <exon start="11147" stop="11260"/>
                    <exon start="13200" stop="13295"/>
                    <exon start="13561" stop="13603"/>
                    <exon start="13898" stop="14074"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKRERREKGDNTIVMENGGGGGEDPQLEPPPQPQRRLKPIPPNPPPTDRPARIYADGIYDLFHFGHARALEQAKKLLPNAQLLVGCCNDEITHKFKGKTVMNEKERYESLRHCRWVDEVIPDAPWVVTPEFIEKHRIDYVAHDALPYADASGAGNDVYEYVKSIGKFLETKRTDGISTSDLIMRIVKDYNEYVMRNLDRGYSRTDLGLSYVKVYSLVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="10560" e_stop="10785"/>
            <exon e_start="11147" e_stop="11260"/>
            <exon e_start="13200" e_stop="13295"/>
            <exon e_start="13561" e_stop="13599"/>
            <exon e_start="13898" e_stop="14053"/>
            <exon e_start="14337" e_stop="14417"/>
            <exon e_start="16908" e_stop="17006"/>
            <exon e_start="17157" e_stop="17548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.982"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.966" e_score="0.979"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.988" e_score="0.994"/>
          <exon-intron don_prob="0.996" acc_prob="0.264" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="10560" e_stop="10785" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11147" e_stop="11260" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="13200" e_stop="13295" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.966">
            <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13561" e_stop="13599" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13600" i_stop="13897" i_length="298"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="13898" e_stop="14053" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14054" i_stop="14336" i_length="283"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14337" e_stop="14417" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.264">
            <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16908" e_stop="17006" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150"/>
          </intron>
          <exon e_serial="8" e_score="0.913">
            <gDNA_exon_boundary e_start="17157" e_stop="17548" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10560" stop="10785"/>
              <exon start="11147" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10586" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13599"/>
              <exon start="13898" stop="14053"/>
              <exon start="14337" stop="14341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14000" stop="14053"/>
              <exon start="14337" stop="14417"/>
              <exon start="16908" stop="17006"/>
              <exon start="17157" stop="17548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17310" stop="17535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT : ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG : ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC : TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGA : GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG : GAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG : ATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATG : GGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGTGACGATGATGAAGAATACTACGATGGTGAAGATGAAGAATAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGATTTGTCTAAATATGTTCTTGAAAATTCTATTTTATTTT</gDNA_template>
            <first_frame> R  R  E  R  E  E  R  R  A  I  I  L  *  *  W  R  M  E  E  E  E  E  K  I  H  N  *  N  H  H  H  S  R  S  D  G  *  S  R  S  H  R  I  H  R  Q  Q  I  G  R  L  V  F  T  P  T  E  S  T  I  S  F  T  S  D  M  L  A  P  S  N  K  L  R  N   : Y  C  L  T  L  S  F  L  L  D  A  A  M  M  K  S  L  T  N  S  R  E  K  L  L  *  M  K  R  S  D  M  N  L  C  A  T  A   : D  G  L  M  K  L  F  Q  M  R  L  G  L  *  P  Q  S  S  L  R  N  I  G  L  T  M  W  H  M  T  L  F   : L  M  R  M  Q  V  E  L  E  M  M  F  T   : S  *  V  H  W  *  V  L  G  D  Q  A  D  *  W  N  I  Y  F  R  F  N  N  E  D  C  K  R  L  Q  *  I  C  D  A  Q  F  G  Q  R  I  F  K  N  G  S  W  S  E  L  R  E   : G  K  K  A  E  S  E  Q  G  F  E  K  V  A  *  E  S  K  E  T  T  R  E  S  G  R  E   : D  T  N  S  S  K  A  S  K  Y  L  G  G  E  C  *  *  I  G  C  W  F  P  *  D  V  *  R  G  L  P  Q  N   : G  N  C  H  K  R  P  N  S  R  T  D  E  D  Q  E  Y  K  R  A  S  I  *  Q  R  R  G  *  *  *  I  *  L  L  L  R  E  Q  *  R  *  *  R  I  L  R  W  *  R  *  R  I  G  L  F  T  F  S  C  Y  V  V  M  *  N  V  V  Y  G  S  S  W  M  K  M  Y  Y  V  L  T  F  G  C  A  C  D  M  R  V  L  F  W  *  N  V  V  A  I  S  C  V  V  N  R  D  Q  A  *  S  C  T  I  T  L  S  I  R  V  I  C  L  N  M  F  L  K  I  L  F  Y  F </first_frame>
            <second_frame>  E  E  R  E  K  R  E  G  R  *  Y  Y  S  N  G  E  W  R  R  R  R  R  R  S  T  I  R  T  T  T  T  A  A  A  T  V  E  A  D  P  T  E  S  T  A  N  R  S  A  G  S  Y  L  R  R  R  N  L  R  S  L  S  L  R  T  C  S  R  P  R  T  S  *  E  T  :  I  A  *  R  S  A  S  C  W  M  L  Q  *  *  N  H  S  Q  I  Q  G  K  N  C  Y  E  *  K  G  A  I  *  I  F  A  P  L  Q  :  M  G  *  *  S  Y  S  R  C  A  L  G  C  N  P  R  V  H  *  E  T  S  D  *  L  C  G  T  *  R  S  S  :  L  C  G  C  K  W  S  W  K  *  C  L  R  :  V  K  S  I  G  K  F  L  E  T  K  R  T  D  G  I  S  T  S  D  L  I  M  R  I  V  K  D  Y  N  E  Y  V  M  R  N  L  D  R  G  Y  S  R  T  D  L  G  L  S  Y  V  K  :  E  K  R  L  R  V  N  R  G  L  K  K  L  H  E  R  V  K  K  Q  Q  E  K  V  E  E  K  :  I  Q  T  V  A  K  H  R  N  I  W  V  E  N  A  D  R  L  V  A  G  F  L  E  M  F  E  E  G  C  H  K  M  :  G  T  V  I  R  D  R  I  Q  E  Q  M  R  T  K  S  I  K  G  L  L  Y  D  K  E  E  D  D  D  E  Y  D  Y  Y  Y  G  S  S  D  D  D  E  E  Y  Y  D  G  E  D  E  E  *  G  C  S  L  S  H  V  M  W  *  C  K  M  *  F  M  D  Q  V  G  *  R  C  I  M  S  *  R  L  D  A  R  V  I  C  V  F  Y  F  G  R  M  *  W  Q  L  V  V  L  *  T  V  I  K  H  S  L  V  P  *  R  C  Q  S  E  *  F  V  *  I  C  S  *  K  F  Y  F  I   </second_frame>
            <third_frame>   K  R  E  R  R  E  K  G  D  N  T  I  V  M  E  N  G  G  G  G  G  E  D  P  Q  L  E  P  P  P  Q  P  Q  R  R  L  K  P  I  P  P  N  P  P  P  T  D  R  P  A  R  I  Y  A  D  G  I  Y  D  L  F  H  F  G  H  A  R  A  L  E  Q  A  K  K  L :   L  P  N  A  Q  L  L  V  G  C  C  N  D  E  I  T  H  K  F  K  G  K  T  V  M  N  E  K  E  R  Y  E  S  L  R  H  C  R :   W  V  D  E  V  I  P  D  A  P  W  V  V  T  P  E  F  I  E  K  H  R  I  D  Y  V  A  H  D  A  L  P :   Y  A  D  A  S  G  A  G  N  D  V  Y  E :   L  S  P  L  V  S  S  W  R  P  S  G  L  M  E  Y  L  L  Q  I  *  *  *  G  L  *  K  T  T  M  N  M  *  C  A  I  W  T  E  D  I  Q  E  R  I  L  V  *  A  T  *  R :   K  K  G  *  E  *  T  G  V  *  K  S  C  M  R  E  *  R  N  N  K  R  K  W  K  R  R :   Y  K  Q  *  Q  S  I  E  I  F  G  W  R  M  L  I  D  W  L  L  V  S  L  R  C  L  K  R  V  A  T  K  W :   E  L  S  *  E  T  E  F  K  N  R  *  G  P  R  V  *  K  G  F  Y  M  T  K  K  R  M  M  M  N  M  T  T  I  T  G  A  V  T  M  M  K  N  T  T  M  V  K  M  K  N  R  V  V  H  F  L  M  L  C  G  D  V  K  C  S  L  W  I  K  L  D  E  D  V  L  C  P  N  V  W  M  R  V  *  Y  A  C  F  I  L  V  E  C  S  G  N  *  L  C  C  K  P  *  S  S  I  V  L  Y  H  N  A  V  N  Q  S  D  L  S  K  Y  V  L  E  N  S  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10562" stop="10785"/>
                    <exon start="11147" stop="11260"/>
                    <exon start="13200" stop="13295"/>
                    <exon start="13561" stop="13599"/>
                    <exon start="13898" stop="13961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRERREKGDNTIVMENGGGGGEDPQLEPPPQPQRRLKPIPPNPPPTDRPARIYADGIYDLFHFGHARALEQAKKLLPNAQLLVGCCNDEITHKFKGKTVMNEKERYESLRHCRWVDEVIPDAPWVVTPEFIEKHRIDYVAHDALPYADASGAGNDVYELSPLVSSWRPSGLMEYLLQI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13591" stop="13599"/>
                    <exon start="13898" stop="14053"/>
                    <exon start="14337" stop="14417"/>
                    <exon start="16908" stop="17006"/>
                    <exon start="17157" stop="17312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLRVKSIGKFLETKRTDGISTSDLIMRIVKDYNEYVMRNLDRGYSRTDLGLSYVKEKRLRVNRGLKKLHERVKKQQEKVEEKIQTVAKHRNIWVENADRLVAGFLEMFEEGCHKMGTVIRDRIQEQMRTKSIKGLLYDKEEDDDEYDYYYGSSDDDEEYYDGEDEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="10560" e_stop="10785"/>
            <exon e_start="11147" e_stop="11260"/>
            <exon e_start="13200" e_stop="13295"/>
            <exon e_start="13561" e_stop="13599"/>
            <exon e_start="13898" e_stop="14053"/>
            <exon e_start="14309" e_stop="14417"/>
            <exon e_start="16908" e_stop="16929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.982"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.264" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="10560" e_stop="10785" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10786" i_stop="11146" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11147" e_stop="11260" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11261" i_stop="13199" i_length="1939"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13200" e_stop="13295" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.966">
            <gDNA_intron_boundary i_start="13296" i_stop="13560" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13561" e_stop="13599" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13600" i_stop="13897" i_length="298"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13898" e_stop="14053" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.956">
            <gDNA_intron_boundary i_start="14054" i_stop="14308" i_length="255"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14309" e_stop="14417" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.264">
            <gDNA_intron_boundary i_start="14418" i_stop="16907" i_length="2490"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16908" e_stop="16929" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10560" stop="10785"/>
              <exon start="11147" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10785"/>
              <exon start="11147" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11151" stop="11260"/>
              <exon start="13200" stop="13295"/>
              <exon start="13561" stop="13599"/>
              <exon start="13898" stop="14053"/>
              <exon start="14309" stop="14417"/>
              <exon start="16908" stop="16929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGAGAGAGAGAAGAGAGAAGGGCGATAATACTATAGTAATGGAGAATGGAGGAGGAGGAGGAGAAGATCCACAATTAGAACCACCACCACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCCGACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACT : ATTGCCTAACGCTCAGCTTCTTGTTGGATGCTGCAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAG : ATGGGTTGATGAAGTTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCC : TTATGCGGATGCAAGTGGAGCTGGAAATGATGTTTACGA : GTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAATAATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCAATTTGGACAGAGGATATTCAAGAACGGATCTTGGTCTGAGCTACGTGAAG : GTATTAACTTCATCATTGCCTCTTTTAGGAAAAAAGGCTGAGAGTGAACAGGGGTTTGAAAAAGTTGCATGAGAGAGTAAAGAAACAACAAGAGAAAGTGGAAGAGAAG : ATACAAACAGTAGCAAAGCATC</gDNA_template>
            <first_frame> R  R  E  R  E  E  R  R  A  I  I  L  *  *  W  R  M  E  E  E  E  E  K  I  H  N  *  N  H  H  H  S  R  S  D  G  *  S  R  S  H  R  I  H  R  Q  Q  I  G  R  L  V  F  T  P  T  E  S  T  I  S  F  T  S  D  M  L  A  P  S  N  K  L  R  N   : Y  C  L  T  L  S  F  L  L  D  A  A  M  M  K  S  L  T  N  S  R  E  K  L  L  *  M  K  R  S  D  M  N  L  C  A  T  A   : D  G  L  M  K  L  F  Q  M  R  L  G  L  *  P  Q  S  S  L  R  N  I  G  L  T  M  W  H  M  T  L  F   : L  M  R  M  Q  V  E  L  E  M  M  F  T   : S  *  V  H  W  *  V  L  G  D  Q  A  D  *  W  N  I  Y  F  R  F  N  N  E  D  C  K  R  L  Q  *  I  C  D  A  Q  F  G  Q  R  I  F  K  N  G  S  W  S  E  L  R  E   : G  I  N  F  I  I  A  S  F  R  K  K  G  *  E  *  T  G  V  *  K  S  C  M  R  E  *  R  N  N  K  R  K  W  K  R  R :   Y  K  Q  *  Q  S  I </first_frame>
            <second_frame>  E  E  R  E  K  R  E  G  R  *  Y  Y  S  N  G  E  W  R  R  R  R  R  R  S  T  I  R  T  T  T  T  A  A  A  T  V  E  A  D  P  T  E  S  T  A  N  R  S  A  G  S  Y  L  R  R  R  N  L  R  S  L  S  L  R  T  C  S  R  P  R  T  S  *  E  T  :  I  A  *  R  S  A  S  C  W  M  L  Q  *  *  N  H  S  Q  I  Q  G  K  N  C  Y  E  *  K  G  A  I  *  I  F  A  P  L  Q  :  M  G  *  *  S  Y  S  R  C  A  L  G  C  N  P  R  V  H  *  E  T  S  D  *  L  C  G  T  *  R  S  S  :  L  C  G  C  K  W  S  W  K  *  C  L  R  :  V  K  S  I  G  K  F  L  E  T  K  R  T  D  G  I  S  T  S  D  L  I  M  R  I  V  K  D  Y  N  E  Y  V  M  R  N  L  D  R  G  Y  S  R  T  D  L  G  L  S  Y  V  K  :  V  L  T  S  S  L  P  L  L  G  K  K  A  E  S  E  Q  G  F  E  K  V  A  *  E  S  K  E  T  T  R  E  S  G  R  E   : D  T  N  S  S  K  A   </second_frame>
            <third_frame>   K  R  E  R  R  E  K  G  D  N  T  I  V  M  E  N  G  G  G  G  G  E  D  P  Q  L  E  P  P  P  Q  P  Q  R  R  L  K  P  I  P  P  N  P  P  P  T  D  R  P  A  R  I  Y  A  D  G  I  Y  D  L  F  H  F  G  H  A  R  A  L  E  Q  A  K  K  L :   L  P  N  A  Q  L  L  V  G  C  C  N  D  E  I  T  H  K  F  K  G  K  T  V  M  N  E  K  E  R  Y  E  S  L  R  H  C  R :   W  V  D  E  V  I  P  D  A  P  W  V  V  T  P  E  F  I  E  K  H  R  I  D  Y  V  A  H  D  A  L  P :   Y  A  D  A  S  G  A  G  N  D  V  Y  E :   L  S  P  L  V  S  S  W  R  P  S  G  L  M  E  Y  L  L  Q  I  *  *  *  G  L  *  K  T  T  M  N  M  *  C  A  I  W  T  E  D  I  Q  E  R  I  L  V  *  A  T  *  R :   Y  *  L  H  H  C  L  F  *  E  K  R  L  R  V  N  R  G  L  K  K  L  H  E  R  V  K  K  Q  Q  E  K  V  E  E  K  :  I  Q  T  V  A  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10562" stop="10785"/>
                    <exon start="11147" stop="11260"/>
                    <exon start="13200" stop="13295"/>
                    <exon start="13561" stop="13599"/>
                    <exon start="13898" stop="13961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRERREKGDNTIVMENGGGGGEDPQLEPPPQPQRRLKPIPPNPPPTDRPARIYADGIYDLFHFGHARALEQAKKLLPNAQLLVGCCNDEITHKFKGKTVMNEKERYESLRHCRWVDEVIPDAPWVVTPEFIEKHRIDYVAHDALPYADASGAGNDVYELSPLVSSWRPSGLMEYLLQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="16842" e_stop="17006"/>
            <exon e_start="17157" e_stop="17535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="0.927"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="16842" e_stop="17006" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="17007" i_stop="17156" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="17157" e_stop="17535" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16842" stop="17006"/>
              <exon start="17157" stop="17527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17310" stop="17535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCATCACTTTAAGCTATTTCTAGTCTTCTAGCACAAAACACGCTAAAAAAGAGTACCTGTTGCAGATACAAACAGTAGCAAAGCATCGAAATATTTGGGTGGAGAATGCTGATAGATTGGTTGCTGGTTTCCTTGAGATGTTTGAAGAGGGTTGCCACAAAATG : GGAACTGTCATAAGAGACCGAATTCAAGAACAGATGAGGACCAAGAGTATAAAAGGGCTTCTATATGACAAAGAAGAGGATGATGATGAATATGACTACTATTACGGGAGCAGTGACGATGATGAAGAATACTACGATGGTGAAGATGAAGAATAGGGTTGTTCACTTTCTCATGTTATGTGGTGATGTAAAATGTAGTTTATGGATCAAGTTGGATGAAGATGTATTATGTCCTAACGTTTGGATGCGCGTGTGATATGCGTGTTTTATTTTGGTAGAATGTAGTGGCAATTAGTTGTGTTGTAAACCGTGATCAAGCATAGTCTTGTACCATAACGCTGTCAATCAGAGTGATTTGTCTAAATATGTTCTTGAAAAT</gDNA_template>
            <first_frame> T  I  T  L  S  Y  F  *  S  S  S  T  K  H  A  K  K  E  Y  L  L  Q  I  Q  T  V  A  K  H  R  N  I  W  V  E  N  A  D  R  L  V  A  G  F  L  E  M  F  E  E  G  C  H  K  M  :  G  T  V  I  R  D  R  I  Q  E  Q  M  R  T  K  S  I  K  G  L  L  Y  D  K  E  E  D  D  D  E  Y  D  Y  Y  Y  G  S  S  D  D  D  E  E  Y  Y  D  G  E  D  E  E  *  G  C  S  L  S  H  V  M  W  *  C  K  M  *  F  M  D  Q  V  G  *  R  C  I  M  S  *  R  L  D  A  R  V  I  C  V  F  Y  F  G  R  M  *  W  Q  L  V  V  L  *  T  V  I  K  H  S  L  V  P  *  R  C  Q  S  E  *  F  V  *  I  C  S  *  K  </first_frame>
            <second_frame>  P  S  L  *  A  I  S  S  L  L  A  Q  N  T  L  K  K  S  T  C  C  R  Y  K  Q  *  Q  S  I  E  I  F  G  W  R  M  L  I  D  W  L  L  V  S  L  R  C  L  K  R  V  A  T  K  W :   E  L  S  *  E  T  E  F  K  N  R  *  G  P  R  V  *  K  G  F  Y  M  T  K  K  R  M  M  M  N  M  T  T  I  T  G  A  V  T  M  M  K  N  T  T  M  V  K  M  K  N  R  V  V  H  F  L  M  L  C  G  D  V  K  C  S  L  W  I  K  L  D  E  D  V  L  C  P  N  V  W  M  R  V  *  Y  A  C  F  I  L  V  E  C  S  G  N  *  L  C  C  K  P  *  S  S  I  V  L  Y  H  N  A  V  N  Q  S  D  L  S  K  Y  V  L  E  N </second_frame>
            <third_frame>   H  H  F  K  L  F  L  V  F  *  H  K  T  R  *  K  R  V  P  V  A  D  T  N  S  S  K  A  S  K  Y  L  G  G  E  C  *  *  I  G  C  W  F  P  *  D  V  *  R  G  L  P  Q  N   : G  N  C  H  K  R  P  N  S  R  T  D  E  D  Q  E  Y  K  R  A  S  I  *  Q  R  R  G  *  *  *  I  *  L  L  L  R  E  Q  *  R  *  *  R  I  L  R  W  *  R  *  R  I  G  L  F  T  F  S  C  Y  V  V  M  *  N  V  V  Y  G  S  S  W  M  K  M  Y  Y  V  L  T  F  G  C  A  C  D  M  R  V  L  F  W  *  N  V  V  A  I  S  C  V  V  N  R  D  Q  A  *  S  C  T  I  T  L  S  I  R  V  I  C  L  N  M  F  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16866" stop="17006"/>
                    <exon start="17157" stop="17312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSTKHAKKEYLLQIQTVAKHRNIWVENADRLVAGFLEMFEEGCHKMGTVIRDRIQEQMRTKSIKGLLYDKEEDDDEYDYYYGSSDDDEEYYDGEDEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18619" PGL_stop="27896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18619" e_stop="18789"/>
            <exon e_start="21634" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="22872" e_stop="22920"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24377" e_stop="24457"/>
            <exon e_start="24546" e_stop="24656"/>
            <exon e_start="24774" e_stop="24856"/>
            <exon e_start="26044" e_stop="26163"/>
            <exon e_start="26256" e_stop="26378"/>
            <exon e_start="26634" e_stop="26700"/>
            <exon e_start="26791" e_stop="26870"/>
            <exon e_start="27409" e_stop="27896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.528" e_score="0.942"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="18619" e_stop="18789" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.528">
            <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21634" e_stop="21806" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22872" e_stop="22920" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24377" e_stop="24457" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24656" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24774" e_stop="24856" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26044" e_stop="26163" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26256" e_stop="26378" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26634" e_stop="26700" e_length="67"/>
          </exon>
          <intron i_serial="11" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="26791" e_stop="26870" e_length="80"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="27409" e_stop="27896" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18619" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18665" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18671" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18671" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18671" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18674" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18681" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18704" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18704" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18721" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18760" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21653" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21657" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22898" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22901" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24432" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24444" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26130" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26334" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26817" stop="26870"/>
              <exon start="27409" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27438" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27439" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTATGTGTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT : TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG : ATGAACTGGTCATCAAAACCAAAAAG : AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG : GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT : ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG : GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG : CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA : ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG : GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG : GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</gDNA_template>
            <first_frame> P  M  C  I  W  S  P  N  S  *  I  K  T  H  R  P  Q  P  P  A  L  S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  :  *  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : G  F  V  W  W  R  L  W  H  G  *  H  L  E  *  *  R :   *  T  G  H  Q  N  Q  K   : E  A  Q  D  F  C  Y  T  C  C  G  S  *  A  S  R  M  L  I  Q  S  S  I  R  K  S  S   : G  C  I  S  L  C  C  C  R  *  N  A  E  N  L  *  K  *  I  G  S  G  A  Y  S  I  G  C  S  W  R  G  S  Q  *  R  R   : Y  V  F  P  *  S  G  Q  W  E  *  H  G  E  *  K  S  S  G  R  R  K  N  R  F  G  *  K  :  A  A  K  A  Q  N  A  D  S  S  *  E  E  S  T  G  *  T  Q  R  T  V  E  S  R  S  *  S  N  K  S  S  T  T  L  Q  R  D  *  *  :  L  T  G  Y  Y  S  R  N  R  E  R  G  R  R  K  T  E  T  T  S  T  S  C  H  C  Y  K  R  K  T  K  I  L  S  T  T  L  G  K  A  Q  :  I  R  A  C  S  C  S  G  F  T  V  *  R  D  Y  W  F  P  A  *  I  K   : G  M  L  H  P  C  K  R  S  I  *  K  P  G  E  K  G  T  S  C  S  F  K  K  E  *  Q  :  E  I  E  *  I  A  S  N  T  D  K  C  F  H  H  R  T  M  R  P  S  S  R  S  P  G  *  E  T  L  *  T  A  R  C  W  F  M  S  A  N  L  E  W  *  S  W  L  L  L  L  L  A  K  W  R  C  R  S  V  Y  L  T  D  A  Y  G  S  L  H  N  I  L  *  S  W  S  S  Y  F  G  S  K  S  D  N  *  L  L  M  Y  L  E  A  E  D  W  C  D  F  S  *  *  T  R  N  D  S  Q  S  Q  P  F  L  N  F  K  M  G  T  L  I  I  N  M  Y  P  K  V  F  N  Y  S  N  *  V  N  F  L  F  D  H  I  R  S  T  I  Y  H  K  F  *  F  S  R  L  E  R  Q  H  F  L   </first_frame>
            <second_frame>  L  C  V  F  G  A  L  I  P  K  S  K  L  T  G  H  S  L  Q  L  S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  F :   R  E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  D  S  S  G  G  D  S  G  M  V  D  I  W  N  D  K   : D  E  L  V  I  K  T  K  K  :  K  P  K  T  S  V  I  P  A  V  E  V  E  P  P  G  C  S  F  N  P  P  S  E  S  H  Q  :  D  A  L  A  C  A  V  A  D  E  M  Q  K  I  Y  R  N  E  L  G  P  E  P  I  P  L  V  V  P  G  E  V  V  N  E  E  D  :  M  Y  F  L  E  A  D  S  G  S  D  T  E  N  E  N  L  V  E  D  G  K  T  D  L  D  K  R :   P  Q  K  P  K  M  L  T  Q  V  E  K  N  R  R  A  R  R  K  E  Q  L  K  A  E  A  E  A  T  K  A  A  Q  L  S  K  E  I  D  S :   L  P  D  I  I  Q  E  I  E  R  E  E  G  E  K  Q  K  R  H  L  R  R  V  T  A  I  K  E  K  L  K  S  C  P  P  R  L  G  K  R  K :   F  V  P  A  P  A  Q  V  L  L  S  E  E  I  T  G  S  L  R  K  L  K  :  G  C  C  T  L  A  R  D  R  F  K  S  L  E  K  R  G  L  V  V  P  S  K  K  S  S  R :   K  *  S  E  L  Q  V  T  Q  I  N  V  F  I  T  A  L  *  D  H  H  P  D  H  L  D  E  R  H  C  R  Q  Q  G  V  G  L  C  L  Q  I  W  S  G  R  A  G  C  S  Y  C  *  Q  N  G  D  V  D  L  F  I  L  L  M  H  M  V  H  Y  T  I  F  Y  S  H  G  Q  V  T  L  G  A  K  V  I  I  N  Y  *  C  I  W  R  Q  K  I  G  V  I  S  L  D  E  P  E  M  I  P  R  V  S  L  F  *  I  L  K  W  E  L  S  *  S  I  C  T  P  K  F  L  I  T  L  I  R  S  T  F  Y  L  I  T  L  D  Q  L  Y  I  T  N  F  D  F  Q  D  L  K  D  N  I  F  Y  </second_frame>
            <third_frame>   Y  V  Y  L  E  P  *  F  L  N  Q  N  S  Q  A  T  A  S  S  S  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D   : L  E  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   I  R  L  V  E  T  L  A  W  L  T  F  G  M  I  K  :  M  N  W  S  S  K  P  K  R :   S  P  R  L  L  L  Y  L  L  W  K  L  S  L  Q  D  A  H  S  I  L  H  P  K  V  I  R :   M  H  *  L  V  L  L  Q  M  K  C  R  K  F  I  E  M  N  W  V  R  S  L  F  H  W  L  F  L  E  R  *  S  M  K  K  I :   C  I  S  L  K  R  T  V  G  V  T  R  R  M  K  I  *  W  K  T  E  K  Q  I  W  I  K   : G  R  K  S  P  K  C  *  L  K  L  R  R  I  D  G  L  D  A  K  N  S  *  K  Q  K  L  K  Q  Q  K  Q  H  N  S  P  K  R  L  I   : A  Y  R  I  L  F  K  K  *  R  E  R  K  E  K  N  R  N  D  I  Y  V  V  S  L  L  *  K  K  N  *  N  L  V  H  H  A  W  E  S  A   : N  S  C  L  L  L  L  R  F  Y  C  L  K  R  L  L  V  P  C  V  N  *  R :   D  V  A  P  L  Q  E  I  D  L  K  A  W  R  K  G  D  *  L  F  L  Q  K  R  V  A   : G  N  R  V  N  C  K  *  H  R  *  M  F  S  S  P  H  Y  E  T  I  I  P  I  T  W  M  R  D  T  V  D  S  K  V  L  V  Y  V  C  K  F  G  V  V  E  L  A  A  L  T  V  S  K  M  E  M  *  I  C  L  S  Y  *  C  I  W  F  I  T  Q  Y  F  I  V  M  V  K  L  L  W  E  Q  K  *  *  L  I  T  D  V  S  G  G  R  R  L  V  *  F  L  L  M  N  Q  K  *  F  P  E  S  A  F  F  K  F  *  N  G  N  S  H  N  Q  Y  V  P  Q  S  F  *  L  L  *  L  G  Q  L  F  I  *  S  H  *  I  N  Y  I  S  Q  I  L  I  F  K  T  *  K  T  T  F  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18620" stop="18789"/>
                    <exon start="21634" stop="21806"/>
                    <exon start="22534" stop="22703"/>
                    <exon start="22872" stop="22920"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24377" stop="24457"/>
                    <exon start="24546" stop="24656"/>
                    <exon start="24774" stop="24856"/>
                    <exon start="26044" stop="26163"/>
                    <exon start="26256" stop="26378"/>
                    <exon start="26634" stop="26700"/>
                    <exon start="26791" stop="26870"/>
                    <exon start="27409" stop="27415"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCVFGALIPKSKLTGHSLQLSLFCSLNSQRHCVGDQQAQRRSKTLVCRLSISQRDGFREMGKNKSSRKGKKAWRANISTEDIEDFFDNSTKDALSGGSLAQVPSDSLFYVDKSRDLSVKRKIEKHREKVLRYDSILQSNAFVEPVPSSTGKKSKKKSKLQIAKDTAQQGQKDSSGGDSGMVDIWNDKDELVIKTKKKPKTSVIPAVEVEPPGCSFNPPSESHQDALACAVADEMQKIYRNELGPEPIPLVVPGEVVNEEDMYFLEADSGSDTENENLVEDGKTDLDKRPQKPKMLTQVEKNRRARRKEQLKAEAEATKAAQLSKEIDSLPDIIQEIEREEGEKQKRHLRRVTAIKEKLKSCPPRLGKRKFVPAPAQVLLSEEITGSLRKLKGCCTLARDRFKSLEKRGLVVPSKKSSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18626" e_stop="18789"/>
            <exon e_start="21637" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="22872" e_stop="22920"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24377" e_stop="24457"/>
            <exon e_start="24546" e_stop="24656"/>
            <exon e_start="24774" e_stop="24856"/>
            <exon e_start="26044" e_stop="26163"/>
            <exon e_start="26256" e_stop="26378"/>
            <exon e_start="26634" e_stop="26700"/>
            <exon e_start="26791" e_stop="26870"/>
            <exon e_start="27409" e_stop="27896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="0.945"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="18626" e_stop="18789" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21637" e_stop="21806" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22872" e_stop="22920" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24377" e_stop="24457" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24656" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24774" e_stop="24856" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26044" e_stop="26163" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26256" e_stop="26378" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26634" e_stop="26700" e_length="67"/>
          </exon>
          <intron i_serial="11" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="26791" e_stop="26870" e_length="80"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="27409" e_stop="27896" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18626" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18664" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18664" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18669" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18672" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18673" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18673" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18686" stop="18789"/>
              <exon start="21637" stop="21766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18712" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18718" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21653" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21657" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22898" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22901" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24432" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24444" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26130" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26334" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26817" stop="26870"/>
              <exon start="27409" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27438" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27439" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT : AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG : ATGAACTGGTCATCAAAACCAAAAAG : AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG : GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT : ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG : GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG : CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA : ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG : GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG : GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</gDNA_template>
            <first_frame> V  F  G  A  L  I  P  K  S  K  L  T  G  H  S  L  Q  L  S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  L :   E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  D  S  S  G  G  D  S  G  M  V  D  I  W  N  D  K   : D  E  L  V  I  K  T  K  K  :  K  P  K  T  S  V  I  P  A  V  E  V  E  P  P  G  C  S  F  N  P  P  S  E  S  H  Q  :  D  A  L  A  C  A  V  A  D  E  M  Q  K  I  Y  R  N  E  L  G  P  E  P  I  P  L  V  V  P  G  E  V  V  N  E  E  D  :  M  Y  F  L  E  A  D  S  G  S  D  T  E  N  E  N  L  V  E  D  G  K  T  D  L  D  K  R :   P  Q  K  P  K  M  L  T  Q  V  E  K  N  R  R  A  R  R  K  E  Q  L  K  A  E  A  E  A  T  K  A  A  Q  L  S  K  E  I  D  S :   L  P  D  I  I  Q  E  I  E  R  E  E  G  E  K  Q  K  R  H  L  R  R  V  T  A  I  K  E  K  L  K  S  C  P  P  R  L  G  K  R  K :   F  V  P  A  P  A  Q  V  L  L  S  E  E  I  T  G  S  L  R  K  L  K  :  G  C  C  T  L  A  R  D  R  F  K  S  L  E  K  R  G  L  V  V  P  S  K  K  S  S  R :   K  *  S  E  L  Q  V  T  Q  I  N  V  F  I  T  A  L  *  D  H  H  P  D  H  L  D  E  R  H  C  R  Q  Q  G  V  G  L  C  L  Q  I  W  S  G  R  A  G  C  S  Y  C  *  Q  N  G  D  V  D  L  F  I  L  L  M  H  M  V  H  Y  T  I  F  Y  S  H  G  Q  V  T  L  G  A  K  V  I  I  N  Y  *  C  I  W  R  Q  K  I  G  V  I  S  L  D  E  P  E  M  I  P  R  V  S  L  F  *  I  L  K  W  E  L  S  *  S  I  C  T  P  K  F  L  I  T  L  I  R  S  T  F  Y  L  I  T  L  D  Q  L  Y  I  T  N  F  D  F  Q  D  L  K  D  N  I  F  Y  </first_frame>
            <second_frame>  Y  L  E  P  *  F  L  N  Q  N  S  Q  A  T  A  S  S  S  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D   : *  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   I  R  L  V  E  T  L  A  W  L  T  F  G  M  I  K  :  M  N  W  S  S  K  P  K  R :   S  P  R  L  L  L  Y  L  L  W  K  L  S  L  Q  D  A  H  S  I  L  H  P  K  V  I  R :   M  H  *  L  V  L  L  Q  M  K  C  R  K  F  I  E  M  N  W  V  R  S  L  F  H  W  L  F  L  E  R  *  S  M  K  K  I :   C  I  S  L  K  R  T  V  G  V  T  R  R  M  K  I  *  W  K  T  E  K  Q  I  W  I  K   : G  R  K  S  P  K  C  *  L  K  L  R  R  I  D  G  L  D  A  K  N  S  *  K  Q  K  L  K  Q  Q  K  Q  H  N  S  P  K  R  L  I   : A  Y  R  I  L  F  K  K  *  R  E  R  K  E  K  N  R  N  D  I  Y  V  V  S  L  L  *  K  K  N  *  N  L  V  H  H  A  W  E  S  A   : N  S  C  L  L  L  L  R  F  Y  C  L  K  R  L  L  V  P  C  V  N  *  R :   D  V  A  P  L  Q  E  I  D  L  K  A  W  R  K  G  D  *  L  F  L  Q  K  R  V  A   : G  N  R  V  N  C  K  *  H  R  *  M  F  S  S  P  H  Y  E  T  I  I  P  I  T  W  M  R  D  T  V  D  S  K  V  L  V  Y  V  C  K  F  G  V  V  E  L  A  A  L  T  V  S  K  M  E  M  *  I  C  L  S  Y  *  C  I  W  F  I  T  Q  Y  F  I  V  M  V  K  L  L  W  E  Q  K  *  *  L  I  T  D  V  S  G  G  R  R  L  V  *  F  L  L  M  N  Q  K  *  F  P  E  S  A  F  F  K  F  *  N  G  N  S  H  N  Q  Y  V  P  Q  S  F  *  L  L  *  L  G  Q  L  F  I  *  S  H  *  I  N  Y  I  S  Q  I  L  I  F  K  T  *  K  T  T  F  S  T </second_frame>
            <third_frame>   I  W  S  P  N  S  *  I  K  T  H  R  P  Q  P  P  A  L  S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  :  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : G  F  V  W  W  R  L  W  H  G  *  H  L  E  *  *  R :   *  T  G  H  Q  N  Q  K   : E  A  Q  D  F  C  Y  T  C  C  G  S  *  A  S  R  M  L  I  Q  S  S  I  R  K  S  S   : G  C  I  S  L  C  C  C  R  *  N  A  E  N  L  *  K  *  I  G  S  G  A  Y  S  I  G  C  S  W  R  G  S  Q  *  R  R   : Y  V  F  P  *  S  G  Q  W  E  *  H  G  E  *  K  S  S  G  R  R  K  N  R  F  G  *  K  :  A  A  K  A  Q  N  A  D  S  S  *  E  E  S  T  G  *  T  Q  R  T  V  E  S  R  S  *  S  N  K  S  S  T  T  L  Q  R  D  *  *  :  L  T  G  Y  Y  S  R  N  R  E  R  G  R  R  K  T  E  T  T  S  T  S  C  H  C  Y  K  R  K  T  K  I  L  S  T  T  L  G  K  A  Q  :  I  R  A  C  S  C  S  G  F  T  V  *  R  D  Y  W  F  P  A  *  I  K   : G  M  L  H  P  C  K  R  S  I  *  K  P  G  E  K  G  T  S  C  S  F  K  K  E  *  Q  :  E  I  E  *  I  A  S  N  T  D  K  C  F  H  H  R  T  M  R  P  S  S  R  S  P  G  *  E  T  L  *  T  A  R  C  W  F  M  S  A  N  L  E  W  *  S  W  L  L  L  L  L  A  K  W  R  C  R  S  V  Y  L  T  D  A  Y  G  S  L  H  N  I  L  *  S  W  S  S  Y  F  G  S  K  S  D  N  *  L  L  M  Y  L  E  A  E  D  W  C  D  F  S  *  *  T  R  N  D  S  Q  S  Q  P  F  L  N  F  K  M  G  T  L  I  I  N  M  Y  P  K  V  F  N  Y  S  N  *  V  N  F  L  F  D  H  I  R  S  T  I  Y  H  K  F  *  F  S  R  L  E  R  Q  H  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18626" stop="18789"/>
                    <exon start="21637" stop="21806"/>
                    <exon start="22534" stop="22703"/>
                    <exon start="22872" stop="22920"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24377" stop="24457"/>
                    <exon start="24546" stop="24656"/>
                    <exon start="24774" stop="24856"/>
                    <exon start="26044" stop="26163"/>
                    <exon start="26256" stop="26378"/>
                    <exon start="26634" stop="26700"/>
                    <exon start="26791" stop="26870"/>
                    <exon start="27409" stop="27415"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1248</number_coding_nucleotides>
                  <number_encoded_amino_acids>416</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFGALIPKSKLTGHSLQLSLFCSLNSQRHCVGDQQAQRRSKTLVCRLSISQRDGLEMGKNKSSRKGKKAWRANISTEDIEDFFDNSTKDALSGGSLAQVPSDSLFYVDKSRDLSVKRKIEKHREKVLRYDSILQSNAFVEPVPSSTGKKSKKKSKLQIAKDTAQQGQKDSSGGDSGMVDIWNDKDELVIKTKKKPKTSVIPAVEVEPPGCSFNPPSESHQDALACAVADEMQKIYRNELGPEPIPLVVPGEVVNEEDMYFLEADSGSDTENENLVEDGKTDLDKRPQKPKMLTQVEKNRRARRKEQLKAEAEATKAAQLSKEIDSLPDIIQEIEREEGEKQKRHLRRVTAIKEKLKSCPPRLGKRKFVPAPAQVLLSEEITGSLRKLKGCCTLARDRFKSLEKRGLVVPSKKSSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18645" e_stop="18822"/>
            <exon e_start="21634" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="22872" e_stop="22920"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24377" e_stop="24457"/>
            <exon e_start="24546" e_stop="24656"/>
            <exon e_start="24774" e_stop="24856"/>
            <exon e_start="26044" e_stop="26163"/>
            <exon e_start="26256" e_stop="26378"/>
            <exon e_start="26634" e_stop="26700"/>
            <exon e_start="26791" e_stop="26870"/>
            <exon e_start="27409" e_stop="27896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.162" acc_prob="0.528" e_score="0.929"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="0.974"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.900" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="18645" e_stop="18822" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.162" acc_prob="0.528">
            <gDNA_intron_boundary i_start="18823" i_stop="21633" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="21634" e_stop="21806" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22872" e_stop="22920" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24377" e_stop="24457" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24656" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24774" e_stop="24856" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26044" e_stop="26163" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26256" e_stop="26378" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26634" e_stop="26700" e_length="67"/>
          </exon>
          <intron i_serial="11" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="26791" e_stop="26870" e_length="80"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="27409" e_stop="27896" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18645" stop="18822"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18654" stop="18822"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18654" stop="18822"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21653" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21657" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22898" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22901" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24432" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24444" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26130" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26334" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26817" stop="26870"/>
              <exon start="27409" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27438" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27439" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTA : TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG : ATGAACTGGTCATCAAAACCAAAAAG : AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG : GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT : ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG : GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG : CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA : ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG : GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG : GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</gDNA_template>
            <first_frame> L  N  Q  N  S  Q  A  T  A  S  S  S  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D  C  K  L  P  H  L  P  L  V  I  F   : I  E  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   I  R  L  V  E  T  L  A  W  L  T  F  G  M  I  K  :  M  N  W  S  S  K  P  K  R :   S  P  R  L  L  L  Y  L  L  W  K  L  S  L  Q  D  A  H  S  I  L  H  P  K  V  I  R :   M  H  *  L  V  L  L  Q  M  K  C  R  K  F  I  E  M  N  W  V  R  S  L  F  H  W  L  F  L  E  R  *  S  M  K  K  I :   C  I  S  L  K  R  T  V  G  V  T  R  R  M  K  I  *  W  K  T  E  K  Q  I  W  I  K   : G  R  K  S  P  K  C  *  L  K  L  R  R  I  D  G  L  D  A  K  N  S  *  K  Q  K  L  K  Q  Q  K  Q  H  N  S  P  K  R  L  I   : A  Y  R  I  L  F  K  K  *  R  E  R  K  E  K  N  R  N  D  I  Y  V  V  S  L  L  *  K  K  N  *  N  L  V  H  H  A  W  E  S  A   : N  S  C  L  L  L  L  R  F  Y  C  L  K  R  L  L  V  P  C  V  N  *  R :   D  V  A  P  L  Q  E  I  D  L  K  A  W  R  K  G  D  *  L  F  L  Q  K  R  V  A   : G  N  R  V  N  C  K  *  H  R  *  M  F  S  S  P  H  Y  E  T  I  I  P  I  T  W  M  R  D  T  V  D  S  K  V  L  V  Y  V  C  K  F  G  V  V  E  L  A  A  L  T  V  S  K  M  E  M  *  I  C  L  S  Y  *  C  I  W  F  I  T  Q  Y  F  I  V  M  V  K  L  L  W  E  Q  K  *  *  L  I  T  D  V  S  G  G  R  R  L  V  *  F  L  L  M  N  Q  K  *  F  P  E  S  A  F  F  K  F  *  N  G  N  S  H  N  Q  Y  V  P  Q  S  F  *  L  L  *  L  G  Q  L  F  I  *  S  H  *  I  N  Y  I  S  Q  I  L  I  F  K  T  *  K  T  T  F  S  T </first_frame>
            <second_frame>  *  I  K  T  H  R  P  Q  P  P  A  L  S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  V  S  Y  L  I  S  H  *  *  Y  L  :  *  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : G  F  V  W  W  R  L  W  H  G  *  H  L  E  *  *  R :   *  T  G  H  Q  N  Q  K   : E  A  Q  D  F  C  Y  T  C  C  G  S  *  A  S  R  M  L  I  Q  S  S  I  R  K  S  S   : G  C  I  S  L  C  C  C  R  *  N  A  E  N  L  *  K  *  I  G  S  G  A  Y  S  I  G  C  S  W  R  G  S  Q  *  R  R   : Y  V  F  P  *  S  G  Q  W  E  *  H  G  E  *  K  S  S  G  R  R  K  N  R  F  G  *  K  :  A  A  K  A  Q  N  A  D  S  S  *  E  E  S  T  G  *  T  Q  R  T  V  E  S  R  S  *  S  N  K  S  S  T  T  L  Q  R  D  *  *  :  L  T  G  Y  Y  S  R  N  R  E  R  G  R  R  K  T  E  T  T  S  T  S  C  H  C  Y  K  R  K  T  K  I  L  S  T  T  L  G  K  A  Q  :  I  R  A  C  S  C  S  G  F  T  V  *  R  D  Y  W  F  P  A  *  I  K   : G  M  L  H  P  C  K  R  S  I  *  K  P  G  E  K  G  T  S  C  S  F  K  K  E  *  Q  :  E  I  E  *  I  A  S  N  T  D  K  C  F  H  H  R  T  M  R  P  S  S  R  S  P  G  *  E  T  L  *  T  A  R  C  W  F  M  S  A  N  L  E  W  *  S  W  L  L  L  L  L  A  K  W  R  C  R  S  V  Y  L  T  D  A  Y  G  S  L  H  N  I  L  *  S  W  S  S  Y  F  G  S  K  S  D  N  *  L  L  M  Y  L  E  A  E  D  W  C  D  F  S  *  *  T  R  N  D  S  Q  S  Q  P  F  L  N  F  K  M  G  T  L  I  I  N  M  Y  P  K  V  F  N  Y  S  N  *  V  N  F  L  F  D  H  I  R  S  T  I  Y  H  K  F  *  F  S  R  L  E  R  Q  H  F  L   </second_frame>
            <third_frame>   K  S  K  L  T  G  H  S  L  Q  L  S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  L  *  A  T  S  S  P  I  S  N  I  Y :   R  E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  D  S  S  G  G  D  S  G  M  V  D  I  W  N  D  K   : D  E  L  V  I  K  T  K  K  :  K  P  K  T  S  V  I  P  A  V  E  V  E  P  P  G  C  S  F  N  P  P  S  E  S  H  Q  :  D  A  L  A  C  A  V  A  D  E  M  Q  K  I  Y  R  N  E  L  G  P  E  P  I  P  L  V  V  P  G  E  V  V  N  E  E  D  :  M  Y  F  L  E  A  D  S  G  S  D  T  E  N  E  N  L  V  E  D  G  K  T  D  L  D  K  R :   P  Q  K  P  K  M  L  T  Q  V  E  K  N  R  R  A  R  R  K  E  Q  L  K  A  E  A  E  A  T  K  A  A  Q  L  S  K  E  I  D  S :   L  P  D  I  I  Q  E  I  E  R  E  E  G  E  K  Q  K  R  H  L  R  R  V  T  A  I  K  E  K  L  K  S  C  P  P  R  L  G  K  R  K :   F  V  P  A  P  A  Q  V  L  L  S  E  E  I  T  G  S  L  R  K  L  K  :  G  C  C  T  L  A  R  D  R  F  K  S  L  E  K  R  G  L  V  V  P  S  K  K  S  S  R :   K  *  S  E  L  Q  V  T  Q  I  N  V  F  I  T  A  L  *  D  H  H  P  D  H  L  D  E  R  H  C  R  Q  Q  G  V  G  L  C  L  Q  I  W  S  G  R  A  G  C  S  Y  C  *  Q  N  G  D  V  D  L  F  I  L  L  M  H  M  V  H  Y  T  I  F  Y  S  H  G  Q  V  T  L  G  A  K  V  I  I  N  Y  *  C  I  W  R  Q  K  I  G  V  I  S  L  D  E  P  E  M  I  P  R  V  S  L  F  *  I  L  K  W  E  L  S  *  S  I  C  T  P  K  F  L  I  T  L  I  R  S  T  F  Y  L  I  T  L  D  Q  L  Y  I  T  N  F  D  F  Q  D  L  K  D  N  I  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18794" stop="18822"/>
                    <exon start="21634" stop="21806"/>
                    <exon start="22534" stop="22703"/>
                    <exon start="22872" stop="22920"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24377" stop="24457"/>
                    <exon start="24546" stop="24656"/>
                    <exon start="24774" stop="24856"/>
                    <exon start="26044" stop="26163"/>
                    <exon start="26256" stop="26378"/>
                    <exon start="26634" stop="26700"/>
                    <exon start="26791" stop="26870"/>
                    <exon start="27409" stop="27415"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATSSPISNIYREMGKNKSSRKGKKAWRANISTEDIEDFFDNSTKDALSGGSLAQVPSDSLFYVDKSRDLSVKRKIEKHREKVLRYDSILQSNAFVEPVPSSTGKKSKKKSKLQIAKDTAQQGQKDSSGGDSGMVDIWNDKDELVIKTKKKPKTSVIPAVEVEPPGCSFNPPSESHQDALACAVADEMQKIYRNELGPEPIPLVVPGEVVNEEDMYFLEADSGSDTENENLVEDGKTDLDKRPQKPKMLTQVEKNRRARRKEQLKAEAEATKAAQLSKEIDSLPDIIQEIEREEGEKQKRHLRRVTAIKEKLKSCPPRLGKRKFVPAPAQVLLSEEITGSLRKLKGCCTLARDRFKSLEKRGLVVPSKKSSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="18680" e_stop="18822"/>
            <exon e_start="21394" e_stop="21545"/>
            <exon e_start="21637" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="22872" e_stop="22920"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24377" e_stop="24457"/>
            <exon e_start="24546" e_stop="24656"/>
            <exon e_start="24774" e_stop="24856"/>
            <exon e_start="26044" e_stop="26163"/>
            <exon e_start="26256" e_stop="26378"/>
            <exon e_start="26634" e_stop="26700"/>
            <exon e_start="26791" e_stop="26870"/>
            <exon e_start="27409" e_stop="27896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.162" acc_prob="0.984" e_score="0.993"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="0.974"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.900" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="18680" e_stop="18822" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.162" acc_prob="0.984">
            <gDNA_intron_boundary i_start="18823" i_stop="21393" i_length="2571"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21394" e_stop="21545" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="21546" i_stop="21636" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="21637" e_stop="21806" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22872" e_stop="22920" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24377" e_stop="24457" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24656" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24774" e_stop="24856" e_length="83"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26044" e_stop="26163" e_length="120"/>
          </exon>
          <intron i_serial="10" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26256" e_stop="26378" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="26634" e_stop="26700" e_length="67"/>
          </exon>
          <intron i_serial="12" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="26791" e_stop="26870" e_length="80"/>
          </exon>
          <intron i_serial="13" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="27409" e_stop="27896" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18680" stop="18822"/>
              <exon start="21394" stop="21545"/>
              <exon start="21637" stop="21727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21653" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21657" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22898" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22901" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24432" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24444" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26130" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26334" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26817" stop="26870"/>
              <exon start="27409" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27438" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27439" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTA : ATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAG : AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG : ATGAACTGGTCATCAAAACCAAAAAG : AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG : GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT : ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG : GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG : CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA : ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG : GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG : GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</gDNA_template>
            <first_frame> S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  L  *  A  T  S  S  P  I  S  N  I  * :   L  V  W  P  S  L  F  V  Q  Q  L  S  E  I  H  I  P  F  Y  E  S  F  S  L  P  N  L  D  R  F  I  L  N  T  V  H  *  S  L  *  L  S  Y  L  F  T  *  E  S  R   : E  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   I  R  L  V  E  T  L  A  W  L  T  F  G  M  I  K  :  M  N  W  S  S  K  P  K  R :   S  P  R  L  L  L  Y  L  L  W  K  L  S  L  Q  D  A  H  S  I  L  H  P  K  V  I  R :   M  H  *  L  V  L  L  Q  M  K  C  R  K  F  I  E  M  N  W  V  R  S  L  F  H  W  L  F  L  E  R  *  S  M  K  K  I :   C  I  S  L  K  R  T  V  G  V  T  R  R  M  K  I  *  W  K  T  E  K  Q  I  W  I  K   : G  R  K  S  P  K  C  *  L  K  L  R  R  I  D  G  L  D  A  K  N  S  *  K  Q  K  L  K  Q  Q  K  Q  H  N  S  P  K  R  L  I   : A  Y  R  I  L  F  K  K  *  R  E  R  K  E  K  N  R  N  D  I  Y  V  V  S  L  L  *  K  K  N  *  N  L  V  H  H  A  W  E  S  A   : N  S  C  L  L  L  L  R  F  Y  C  L  K  R  L  L  V  P  C  V  N  *  R :   D  V  A  P  L  Q  E  I  D  L  K  A  W  R  K  G  D  *  L  F  L  Q  K  R  V  A   : G  N  R  V  N  C  K  *  H  R  *  M  F  S  S  P  H  Y  E  T  I  I  P  I  T  W  M  R  D  T  V  D  S  K  V  L  V  Y  V  C  K  F  G  V  V  E  L  A  A  L  T  V  S  K  M  E  M  *  I  C  L  S  Y  *  C  I  W  F  I  T  Q  Y  F  I  V  M  V  K  L  L  W  E  Q  K  *  *  L  I  T  D  V  S  G  G  R  R  L  V  *  F  L  L  M  N  Q  K  *  F  P  E  S  A  F  F  K  F  *  N  G  N  S  H  N  Q  Y  V  P  Q  S  F  *  L  L  *  L  G  Q  L  F  I  *  S  H  *  I  N  Y  I  S  Q  I  L  I  F  K  T  *  K  T  T  F  S  T </first_frame>
            <second_frame>  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D  C  K  L  P  H  L  P  L  V  I  F   : N  W  F  G  P  P  C  L  C  S  S  C  Q  R  S  I  S  H  S  T  R  V  L  A  C  Q  I  S  T  D  L  F  L  T  L  S  T  N  L  F  D  L  A  T  C  S  L  R  N  Q  E  :  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : G  F  V  W  W  R  L  W  H  G  *  H  L  E  *  *  R :   *  T  G  H  Q  N  Q  K   : E  A  Q  D  F  C  Y  T  C  C  G  S  *  A  S  R  M  L  I  Q  S  S  I  R  K  S  S   : G  C  I  S  L  C  C  C  R  *  N  A  E  N  L  *  K  *  I  G  S  G  A  Y  S  I  G  C  S  W  R  G  S  Q  *  R  R   : Y  V  F  P  *  S  G  Q  W  E  *  H  G  E  *  K  S  S  G  R  R  K  N  R  F  G  *  K  :  A  A  K  A  Q  N  A  D  S  S  *  E  E  S  T  G  *  T  Q  R  T  V  E  S  R  S  *  S  N  K  S  S  T  T  L  Q  R  D  *  *  :  L  T  G  Y  Y  S  R  N  R  E  R  G  R  R  K  T  E  T  T  S  T  S  C  H  C  Y  K  R  K  T  K  I  L  S  T  T  L  G  K  A  Q  :  I  R  A  C  S  C  S  G  F  T  V  *  R  D  Y  W  F  P  A  *  I  K   : G  M  L  H  P  C  K  R  S  I  *  K  P  G  E  K  G  T  S  C  S  F  K  K  E  *  Q  :  E  I  E  *  I  A  S  N  T  D  K  C  F  H  H  R  T  M  R  P  S  S  R  S  P  G  *  E  T  L  *  T  A  R  C  W  F  M  S  A  N  L  E  W  *  S  W  L  L  L  L  L  A  K  W  R  C  R  S  V  Y  L  T  D  A  Y  G  S  L  H  N  I  L  *  S  W  S  S  Y  F  G  S  K  S  D  N  *  L  L  M  Y  L  E  A  E  D  W  C  D  F  S  *  *  T  R  N  D  S  Q  S  Q  P  F  L  N  F  K  M  G  T  L  I  I  N  M  Y  P  K  V  F  N  Y  S  N  *  V  N  F  L  F  D  H  I  R  S  T  I  Y  H  K  F  *  F  S  R  L  E  R  Q  H  F  L   </second_frame>
            <third_frame>   S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  V  S  Y  L  I  S  H  *  *  Y  L  :  I  G  L  A  L  P  V  C  A  A  A  V  R  D  P  Y  P  I  L  R  E  F  *  L  A  K  S  R  Q  I  Y  S  *  H  C  P  L  I  S  L  T  *  L  L  V  H  L  G  I  K  R :   E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  D  S  S  G  G  D  S  G  M  V  D  I  W  N  D  K   : D  E  L  V  I  K  T  K  K  :  K  P  K  T  S  V  I  P  A  V  E  V  E  P  P  G  C  S  F  N  P  P  S  E  S  H  Q  :  D  A  L  A  C  A  V  A  D  E  M  Q  K  I  Y  R  N  E  L  G  P  E  P  I  P  L  V  V  P  G  E  V  V  N  E  E  D  :  M  Y  F  L  E  A  D  S  G  S  D  T  E  N  E  N  L  V  E  D  G  K  T  D  L  D  K  R :   P  Q  K  P  K  M  L  T  Q  V  E  K  N  R  R  A  R  R  K  E  Q  L  K  A  E  A  E  A  T  K  A  A  Q  L  S  K  E  I  D  S :   L  P  D  I  I  Q  E  I  E  R  E  E  G  E  K  Q  K  R  H  L  R  R  V  T  A  I  K  E  K  L  K  S  C  P  P  R  L  G  K  R  K :   F  V  P  A  P  A  Q  V  L  L  S  E  E  I  T  G  S  L  R  K  L  K  :  G  C  C  T  L  A  R  D  R  F  K  S  L  E  K  R  G  L  V  V  P  S  K  K  S  S  R :   K  *  S  E  L  Q  V  T  Q  I  N  V  F  I  T  A  L  *  D  H  H  P  D  H  L  D  E  R  H  C  R  Q  Q  G  V  G  L  C  L  Q  I  W  S  G  R  A  G  C  S  Y  C  *  Q  N  G  D  V  D  L  F  I  L  L  M  H  M  V  H  Y  T  I  F  Y  S  H  G  Q  V  T  L  G  A  K  V  I  I  N  Y  *  C  I  W  R  Q  K  I  G  V  I  S  L  D  E  P  E  M  I  P  R  V  S  L  F  *  I  L  K  W  E  L  S  *  S  I  C  T  P  K  F  L  I  T  L  I  R  S  T  F  Y  L  I  T  L  D  Q  L  Y  I  T  N  F  D  F  Q  D  L  K  D  N  I  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21520" stop="21545"/>
                    <exon start="21637" stop="21806"/>
                    <exon start="22534" stop="22703"/>
                    <exon start="22872" stop="22920"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24377" stop="24457"/>
                    <exon start="24546" stop="24656"/>
                    <exon start="24774" stop="24856"/>
                    <exon start="26044" stop="26163"/>
                    <exon start="26256" stop="26378"/>
                    <exon start="26634" stop="26700"/>
                    <exon start="26791" stop="26870"/>
                    <exon start="27409" stop="27415"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVHLGIKREMGKNKSSRKGKKAWRANISTEDIEDFFDNSTKDALSGGSLAQVPSDSLFYVDKSRDLSVKRKIEKHREKVLRYDSILQSNAFVEPVPSSTGKKSKKKSKLQIAKDTAQQGQKDSSGGDSGMVDIWNDKDELVIKTKKKPKTSVIPAVEVEPPGCSFNPPSESHQDALACAVADEMQKIYRNELGPEPIPLVVPGEVVNEEDMYFLEADSGSDTENENLVEDGKTDLDKRPQKPKMLTQVEKNRRARRKEQLKAEAEATKAAQLSKEIDSLPDIIQEIEREEGEKQKRHLRRVTAIKEKLKSCPPRLGKRKFVPAPAQVLLSEEITGSLRKLKGCCTLARDRFKSLEKRGLVVPSKKSSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="18644" e_stop="18826"/>
            <exon e_start="21634" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="22872" e_stop="22920"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24377" e_stop="24457"/>
            <exon e_start="24546" e_stop="24656"/>
            <exon e_start="24774" e_stop="24856"/>
            <exon e_start="26044" e_stop="26163"/>
            <exon e_start="26256" e_stop="26378"/>
            <exon e_start="26634" e_stop="26700"/>
            <exon e_start="26791" e_stop="26870"/>
            <exon e_start="27409" e_stop="27896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.528" e_score="0.929"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="0.974"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.900" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="18644" e_stop="18826" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.528">
            <gDNA_intron_boundary i_start="18827" i_stop="21633" i_length="2807"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="21634" e_stop="21806" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22872" e_stop="22920" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24377" e_stop="24457" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24656" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24774" e_stop="24856" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26044" e_stop="26163" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26256" e_stop="26378" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26634" e_stop="26700" e_length="67"/>
          </exon>
          <intron i_serial="11" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="26791" e_stop="26870" e_length="80"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="27409" e_stop="27896" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18644" stop="18826"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21653" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21657" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22898" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22901" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24432" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24444" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26130" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26334" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26817" stop="26870"/>
              <exon start="27409" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27438" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27439" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATTGTAAGCTACCTCATCTCCCATTAGTAATATTTAGTAT : TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG : ATGAACTGGTCATCAAAACCAAAAAG : AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG : GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT : ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG : GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG : CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA : ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG : GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG : GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</gDNA_template>
            <first_frame> P  K  S  K  L  T  G  H  S  L  Q  L  S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  L  *  A  T  S  S  P  I  S  N  I  *  Y  :  *  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : G  F  V  W  W  R  L  W  H  G  *  H  L  E  *  *  R :   *  T  G  H  Q  N  Q  K   : E  A  Q  D  F  C  Y  T  C  C  G  S  *  A  S  R  M  L  I  Q  S  S  I  R  K  S  S   : G  C  I  S  L  C  C  C  R  *  N  A  E  N  L  *  K  *  I  G  S  G  A  Y  S  I  G  C  S  W  R  G  S  Q  *  R  R   : Y  V  F  P  *  S  G  Q  W  E  *  H  G  E  *  K  S  S  G  R  R  K  N  R  F  G  *  K  :  A  A  K  A  Q  N  A  D  S  S  *  E  E  S  T  G  *  T  Q  R  T  V  E  S  R  S  *  S  N  K  S  S  T  T  L  Q  R  D  *  *  :  L  T  G  Y  Y  S  R  N  R  E  R  G  R  R  K  T  E  T  T  S  T  S  C  H  C  Y  K  R  K  T  K  I  L  S  T  T  L  G  K  A  Q  :  I  R  A  C  S  C  S  G  F  T  V  *  R  D  Y  W  F  P  A  *  I  K   : G  M  L  H  P  C  K  R  S  I  *  K  P  G  E  K  G  T  S  C  S  F  K  K  E  *  Q  :  E  I  E  *  I  A  S  N  T  D  K  C  F  H  H  R  T  M  R  P  S  S  R  S  P  G  *  E  T  L  *  T  A  R  C  W  F  M  S  A  N  L  E  W  *  S  W  L  L  L  L  L  A  K  W  R  C  R  S  V  Y  L  T  D  A  Y  G  S  L  H  N  I  L  *  S  W  S  S  Y  F  G  S  K  S  D  N  *  L  L  M  Y  L  E  A  E  D  W  C  D  F  S  *  *  T  R  N  D  S  Q  S  Q  P  F  L  N  F  K  M  G  T  L  I  I  N  M  Y  P  K  V  F  N  Y  S  N  *  V  N  F  L  F  D  H  I  R  S  T  I  Y  H  K  F  *  F  S  R  L  E  R  Q  H  F  L   </first_frame>
            <second_frame>  L  N  Q  N  S  Q  A  T  A  S  S  S  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D  C  K  L  P  H  L  P  L  V  I  F  S  I :   R  E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  D  S  S  G  G  D  S  G  M  V  D  I  W  N  D  K   : D  E  L  V  I  K  T  K  K  :  K  P  K  T  S  V  I  P  A  V  E  V  E  P  P  G  C  S  F  N  P  P  S  E  S  H  Q  :  D  A  L  A  C  A  V  A  D  E  M  Q  K  I  Y  R  N  E  L  G  P  E  P  I  P  L  V  V  P  G  E  V  V  N  E  E  D  :  M  Y  F  L  E  A  D  S  G  S  D  T  E  N  E  N  L  V  E  D  G  K  T  D  L  D  K  R :   P  Q  K  P  K  M  L  T  Q  V  E  K  N  R  R  A  R  R  K  E  Q  L  K  A  E  A  E  A  T  K  A  A  Q  L  S  K  E  I  D  S :   L  P  D  I  I  Q  E  I  E  R  E  E  G  E  K  Q  K  R  H  L  R  R  V  T  A  I  K  E  K  L  K  S  C  P  P  R  L  G  K  R  K :   F  V  P  A  P  A  Q  V  L  L  S  E  E  I  T  G  S  L  R  K  L  K  :  G  C  C  T  L  A  R  D  R  F  K  S  L  E  K  R  G  L  V  V  P  S  K  K  S  S  R :   K  *  S  E  L  Q  V  T  Q  I  N  V  F  I  T  A  L  *  D  H  H  P  D  H  L  D  E  R  H  C  R  Q  Q  G  V  G  L  C  L  Q  I  W  S  G  R  A  G  C  S  Y  C  *  Q  N  G  D  V  D  L  F  I  L  L  M  H  M  V  H  Y  T  I  F  Y  S  H  G  Q  V  T  L  G  A  K  V  I  I  N  Y  *  C  I  W  R  Q  K  I  G  V  I  S  L  D  E  P  E  M  I  P  R  V  S  L  F  *  I  L  K  W  E  L  S  *  S  I  C  T  P  K  F  L  I  T  L  I  R  S  T  F  Y  L  I  T  L  D  Q  L  Y  I  T  N  F  D  F  Q  D  L  K  D  N  I  F  Y  </second_frame>
            <third_frame>   *  I  K  T  H  R  P  Q  P  P  A  L  S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  V  S  Y  L  I  S  H  *  *  Y  L  V   : L  E  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   I  R  L  V  E  T  L  A  W  L  T  F  G  M  I  K  :  M  N  W  S  S  K  P  K  R :   S  P  R  L  L  L  Y  L  L  W  K  L  S  L  Q  D  A  H  S  I  L  H  P  K  V  I  R :   M  H  *  L  V  L  L  Q  M  K  C  R  K  F  I  E  M  N  W  V  R  S  L  F  H  W  L  F  L  E  R  *  S  M  K  K  I :   C  I  S  L  K  R  T  V  G  V  T  R  R  M  K  I  *  W  K  T  E  K  Q  I  W  I  K   : G  R  K  S  P  K  C  *  L  K  L  R  R  I  D  G  L  D  A  K  N  S  *  K  Q  K  L  K  Q  Q  K  Q  H  N  S  P  K  R  L  I   : A  Y  R  I  L  F  K  K  *  R  E  R  K  E  K  N  R  N  D  I  Y  V  V  S  L  L  *  K  K  N  *  N  L  V  H  H  A  W  E  S  A   : N  S  C  L  L  L  L  R  F  Y  C  L  K  R  L  L  V  P  C  V  N  *  R :   D  V  A  P  L  Q  E  I  D  L  K  A  W  R  K  G  D  *  L  F  L  Q  K  R  V  A   : G  N  R  V  N  C  K  *  H  R  *  M  F  S  S  P  H  Y  E  T  I  I  P  I  T  W  M  R  D  T  V  D  S  K  V  L  V  Y  V  C  K  F  G  V  V  E  L  A  A  L  T  V  S  K  M  E  M  *  I  C  L  S  Y  *  C  I  W  F  I  T  Q  Y  F  I  V  M  V  K  L  L  W  E  Q  K  *  *  L  I  T  D  V  S  G  G  R  R  L  V  *  F  L  L  M  N  Q  K  *  F  P  E  S  A  F  F  K  F  *  N  G  N  S  H  N  Q  Y  V  P  Q  S  F  *  L  L  *  L  G  Q  L  F  I  *  S  H  *  I  N  Y  I  S  Q  I  L  I  F  K  T  *  K  T  T  F  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18699" stop="18826"/>
                    <exon start="21634" stop="21806"/>
                    <exon start="22534" stop="22703"/>
                    <exon start="22872" stop="22920"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24377" stop="24457"/>
                    <exon start="24546" stop="24656"/>
                    <exon start="24774" stop="24856"/>
                    <exon start="26044" stop="26163"/>
                    <exon start="26256" stop="26378"/>
                    <exon start="26634" stop="26700"/>
                    <exon start="26791" stop="26870"/>
                    <exon start="27409" stop="27415"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLRDTVSATSKHSGAAKLSSVDSLSLSVTDCKLPHLPLVIFSIREMGKNKSSRKGKKAWRANISTEDIEDFFDNSTKDALSGGSLAQVPSDSLFYVDKSRDLSVKRKIEKHREKVLRYDSILQSNAFVEPVPSSTGKKSKKKSKLQIAKDTAQQGQKDSSGGDSGMVDIWNDKDELVIKTKKKPKTSVIPAVEVEPPGCSFNPPSESHQDALACAVADEMQKIYRNELGPEPIPLVVPGEVVNEEDMYFLEADSGSDTENENLVEDGKTDLDKRPQKPKMLTQVEKNRRARRKEQLKAEAEATKAAQLSKEIDSLPDIIQEIEREEGEKQKRHLRRVTAIKEKLKSCPPRLGKRKFVPAPAQVLLSEEITGSLRKLKGCCTLARDRFKSLEKRGLVVPSKKSSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="18620" e_stop="18789"/>
            <exon e_start="21394" e_stop="21545"/>
            <exon e_start="21634" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="22872" e_stop="22920"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24377" e_stop="24457"/>
            <exon e_start="24546" e_stop="24656"/>
            <exon e_start="24774" e_stop="24856"/>
            <exon e_start="26044" e_stop="26163"/>
            <exon e_start="26256" e_stop="26378"/>
            <exon e_start="26634" e_stop="26700"/>
            <exon e_start="26791" e_stop="26870"/>
            <exon e_start="27409" e_stop="27896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.528" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.900" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18620" e_stop="18789" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="18790" i_stop="21393" i_length="2604"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21394" e_stop="21545" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.528">
            <gDNA_intron_boundary i_start="21546" i_stop="21633" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21634" e_stop="21806" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22872" e_stop="22920" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24377" e_stop="24457" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24656" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24774" e_stop="24856" e_length="83"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26044" e_stop="26163" e_length="120"/>
          </exon>
          <intron i_serial="10" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26256" e_stop="26378" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="26634" e_stop="26700" e_length="67"/>
          </exon>
          <intron i_serial="12" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="26791" e_stop="26870" e_length="80"/>
          </exon>
          <intron i_serial="13" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="27409" e_stop="27896" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18620" stop="18789"/>
              <exon start="21394" stop="21545"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21653" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21657" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22584" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22898" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22901" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24432" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24444" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26130" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26334" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26817" stop="26870"/>
              <exon start="27409" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27438" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27439" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATGTGTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT : ATTGGTTTGGCCCTCCCTGTTTGTGCAGCAGCTGTCAGAGATCCATATCCCATTCTACGAGAGTTTTAGCTTGCCAAATCTCGACAGATTTATTCTTAACACTGTCCACTAATCTCTTTGACTTAGCTACTTGTTCACTTAGGAATCAAGAG : TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG : ATGAACTGGTCATCAAAACCAAAAAG : AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG : GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT : ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG : GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG : CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA : ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG : GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG : GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</gDNA_template>
            <first_frame> L  C  V  F  G  A  L  I  P  K  S  K  L  T  G  H  S  L  Q  L  S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  L :   L  V  W  P  S  L  F  V  Q  Q  L  S  E  I  H  I  P  F  Y  E  S  F  S  L  P  N  L  D  R  F  I  L  N  T  V  H  *  S  L  *  L  S  Y  L  F  T  *  E  S  R   : V  E  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   I  R  L  V  E  T  L  A  W  L  T  F  G  M  I  K  :  M  N  W  S  S  K  P  K  R :   S  P  R  L  L  L  Y  L  L  W  K  L  S  L  Q  D  A  H  S  I  L  H  P  K  V  I  R :   M  H  *  L  V  L  L  Q  M  K  C  R  K  F  I  E  M  N  W  V  R  S  L  F  H  W  L  F  L  E  R  *  S  M  K  K  I :   C  I  S  L  K  R  T  V  G  V  T  R  R  M  K  I  *  W  K  T  E  K  Q  I  W  I  K   : G  R  K  S  P  K  C  *  L  K  L  R  R  I  D  G  L  D  A  K  N  S  *  K  Q  K  L  K  Q  Q  K  Q  H  N  S  P  K  R  L  I   : A  Y  R  I  L  F  K  K  *  R  E  R  K  E  K  N  R  N  D  I  Y  V  V  S  L  L  *  K  K  N  *  N  L  V  H  H  A  W  E  S  A   : N  S  C  L  L  L  L  R  F  Y  C  L  K  R  L  L  V  P  C  V  N  *  R :   D  V  A  P  L  Q  E  I  D  L  K  A  W  R  K  G  D  *  L  F  L  Q  K  R  V  A   : G  N  R  V  N  C  K  *  H  R  *  M  F  S  S  P  H  Y  E  T  I  I  P  I  T  W  M  R  D  T  V  D  S  K  V  L  V  Y  V  C  K  F  G  V  V  E  L  A  A  L  T  V  S  K  M  E  M  *  I  C  L  S  Y  *  C  I  W  F  I  T  Q  Y  F  I  V  M  V  K  L  L  W  E  Q  K  *  *  L  I  T  D  V  S  G  G  R  R  L  V  *  F  L  L  M  N  Q  K  *  F  P  E  S  A  F  F  K  F  *  N  G  N  S  H  N  Q  Y  V  P  Q  S  F  *  L  L  *  L  G  Q  L  F  I  *  S  H  *  I  N  Y  I  S  Q  I  L  I  F  K  T  *  K  T  T  F  S  T </first_frame>
            <second_frame>  Y  V  Y  L  E  P  *  F  L  N  Q  N  S  Q  A  T  A  S  S  S  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D   : Y  W  F  G  P  P  C  L  C  S  S  C  Q  R  S  I  S  H  S  T  R  V  L  A  C  Q  I  S  T  D  L  F  L  T  L  S  T  N  L  F  D  L  A  T  C  S  L  R  N  Q  E  :  *  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : G  F  V  W  W  R  L  W  H  G  *  H  L  E  *  *  R :   *  T  G  H  Q  N  Q  K   : E  A  Q  D  F  C  Y  T  C  C  G  S  *  A  S  R  M  L  I  Q  S  S  I  R  K  S  S   : G  C  I  S  L  C  C  C  R  *  N  A  E  N  L  *  K  *  I  G  S  G  A  Y  S  I  G  C  S  W  R  G  S  Q  *  R  R   : Y  V  F  P  *  S  G  Q  W  E  *  H  G  E  *  K  S  S  G  R  R  K  N  R  F  G  *  K  :  A  A  K  A  Q  N  A  D  S  S  *  E  E  S  T  G  *  T  Q  R  T  V  E  S  R  S  *  S  N  K  S  S  T  T  L  Q  R  D  *  *  :  L  T  G  Y  Y  S  R  N  R  E  R  G  R  R  K  T  E  T  T  S  T  S  C  H  C  Y  K  R  K  T  K  I  L  S  T  T  L  G  K  A  Q  :  I  R  A  C  S  C  S  G  F  T  V  *  R  D  Y  W  F  P  A  *  I  K   : G  M  L  H  P  C  K  R  S  I  *  K  P  G  E  K  G  T  S  C  S  F  K  K  E  *  Q  :  E  I  E  *  I  A  S  N  T  D  K  C  F  H  H  R  T  M  R  P  S  S  R  S  P  G  *  E  T  L  *  T  A  R  C  W  F  M  S  A  N  L  E  W  *  S  W  L  L  L  L  L  A  K  W  R  C  R  S  V  Y  L  T  D  A  Y  G  S  L  H  N  I  L  *  S  W  S  S  Y  F  G  S  K  S  D  N  *  L  L  M  Y  L  E  A  E  D  W  C  D  F  S  *  *  T  R  N  D  S  Q  S  Q  P  F  L  N  F  K  M  G  T  L  I  I  N  M  Y  P  K  V  F  N  Y  S  N  *  V  N  F  L  F  D  H  I  R  S  T  I  Y  H  K  F  *  F  S  R  L  E  R  Q  H  F  L   </second_frame>
            <third_frame>   M  C  I  W  S  P  N  S  *  I  K  T  H  R  P  Q  P  P  A  L  S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  :  I  G  L  A  L  P  V  C  A  A  A  V  R  D  P  Y  P  I  L  R  E  F  *  L  A  K  S  R  Q  I  Y  S  *  H  C  P  L  I  S  L  T  *  L  L  V  H  L  G  I  K  S :   R  E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  D  S  S  G  G  D  S  G  M  V  D  I  W  N  D  K   : D  E  L  V  I  K  T  K  K  :  K  P  K  T  S  V  I  P  A  V  E  V  E  P  P  G  C  S  F  N  P  P  S  E  S  H  Q  :  D  A  L  A  C  A  V  A  D  E  M  Q  K  I  Y  R  N  E  L  G  P  E  P  I  P  L  V  V  P  G  E  V  V  N  E  E  D  :  M  Y  F  L  E  A  D  S  G  S  D  T  E  N  E  N  L  V  E  D  G  K  T  D  L  D  K  R :   P  Q  K  P  K  M  L  T  Q  V  E  K  N  R  R  A  R  R  K  E  Q  L  K  A  E  A  E  A  T  K  A  A  Q  L  S  K  E  I  D  S :   L  P  D  I  I  Q  E  I  E  R  E  E  G  E  K  Q  K  R  H  L  R  R  V  T  A  I  K  E  K  L  K  S  C  P  P  R  L  G  K  R  K :   F  V  P  A  P  A  Q  V  L  L  S  E  E  I  T  G  S  L  R  K  L  K  :  G  C  C  T  L  A  R  D  R  F  K  S  L  E  K  R  G  L  V  V  P  S  K  K  S  S  R :   K  *  S  E  L  Q  V  T  Q  I  N  V  F  I  T  A  L  *  D  H  H  P  D  H  L  D  E  R  H  C  R  Q  Q  G  V  G  L  C  L  Q  I  W  S  G  R  A  G  C  S  Y  C  *  Q  N  G  D  V  D  L  F  I  L  L  M  H  M  V  H  Y  T  I  F  Y  S  H  G  Q  V  T  L  G  A  K  V  I  I  N  Y  *  C  I  W  R  Q  K  I  G  V  I  S  L  D  E  P  E  M  I  P  R  V  S  L  F  *  I  L  K  W  E  L  S  *  S  I  C  T  P  K  F  L  I  T  L  I  R  S  T  F  Y  L  I  T  L  D  Q  L  Y  I  T  N  F  D  F  Q  D  L  K  D  N  I  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21520" stop="21545"/>
                    <exon start="21634" stop="21806"/>
                    <exon start="22534" stop="22703"/>
                    <exon start="22872" stop="22920"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24377" stop="24457"/>
                    <exon start="24546" stop="24656"/>
                    <exon start="24774" stop="24856"/>
                    <exon start="26044" stop="26163"/>
                    <exon start="26256" stop="26378"/>
                    <exon start="26634" stop="26700"/>
                    <exon start="26791" stop="26870"/>
                    <exon start="27409" stop="27415"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVHLGIKSREMGKNKSSRKGKKAWRANISTEDIEDFFDNSTKDALSGGSLAQVPSDSLFYVDKSRDLSVKRKIEKHREKVLRYDSILQSNAFVEPVPSSTGKKSKKKSKLQIAKDTAQQGQKDSSGGDSGMVDIWNDKDELVIKTKKKPKTSVIPAVEVEPPGCSFNPPSESHQDALACAVADEMQKIYRNELGPEPIPLVVPGEVVNEEDMYFLEADSGSDTENENLVEDGKTDLDKRPQKPKMLTQVEKNRRARRKEQLKAEAEATKAAQLSKEIDSLPDIIQEIEREEGEKQKRHLRRVTAIKEKLKSCPPRLGKRKFVPAPAQVLLSEEITGSLRKLKGCCTLARDRFKSLEKRGLVVPSKKSSRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18620" stop="18789"/>
                    <exon start="21394" stop="21505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCVFGALIPKSKLTGHSLQLSLFCSLNSQRHCVGDQQAQRRSKTLVCRLSISQRDGLLVWPSLFVQQLSEIHIPFYESFSLPNLDRFILNTVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="18626" e_stop="18789"/>
            <exon e_start="21637" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24377" e_stop="24457"/>
            <exon e_start="24546" e_stop="24656"/>
            <exon e_start="24774" e_stop="24856"/>
            <exon e_start="26044" e_stop="26163"/>
            <exon e_start="26256" e_stop="26378"/>
            <exon e_start="26634" e_stop="26700"/>
            <exon e_start="26791" e_stop="26870"/>
            <exon e_start="27409" e_stop="27896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="0.945"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="0.994"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="0.992"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="18626" e_stop="18789" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="18790" i_stop="21636" i_length="2847"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="21637" e_stop="21806" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22704" i_stop="23007" i_length="304"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="23034" i_stop="24376" i_length="1343"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24377" e_stop="24457" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="24458" i_stop="24545" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24656" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="24657" i_stop="24773" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24774" e_stop="24856" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24857" i_stop="26043" i_length="1187"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26044" e_stop="26163" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26164" i_stop="26255" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="26256" e_stop="26378" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="26379" i_stop="26633" i_length="255"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26634" e_stop="26700" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26701" i_stop="26790" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="0.988">
            <gDNA_exon_boundary e_start="26791" e_stop="26870" e_length="80"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26871" i_stop="27408" i_length="538"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="27409" e_stop="27896" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18626" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18664" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18686" stop="18789"/>
              <exon start="21637" stop="21766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18712" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18744" stop="18789"/>
              <exon start="21637" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="23008" stop="23031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="23033"/>
              <exon start="24377" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24432" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24444" stop="24457"/>
              <exon start="24546" stop="24656"/>
              <exon start="24774" stop="24856"/>
              <exon start="26044" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26130" stop="26163"/>
              <exon start="26256" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26334" stop="26378"/>
              <exon start="26634" stop="26700"/>
              <exon start="26791" stop="26870"/>
              <exon start="27409" stop="27766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26817" stop="26870"/>
              <exon start="27409" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27433" stop="27879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27438" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27439" stop="27896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT : AGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : ATGAACTGGTCATCAAAACCAAAAAG : AAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTTGAGCCTCCAGGATGCTCATTCAATCCTCCATCCGAAAGTCATCAG : GATGCATTAGCTTGTGCTGTTGCAGATGAAATGCAGAAAATTTATAGAAATGAATTGGGTCCGGAGCCTATTCCATTGGTTGTTCCTGGAGAGGTAGTCAATGAAGAAGAT : ATGTATTTCCTTGAAGCGGACAGTGGGAGTGACACGGAGAATGAAAATCTAGTGGAAGACGGAAAAACAGATTTGGATAAAAG : GCCGCAAAAGCCCAAAATGCTGACTCAAGTTGAGAAGAATCGACGGGCTAGACGCAAAGAACAGTTGAAAGCAGAAGCTGAAGCAACAAAAGCAGCACAACTCTCCAAAGAGATTGATAG : CTTACCGGATATTATTCAAGAAATAGAGAGAGAGGAAGGAGAAAAACAGAAACGACATCTACGTCGTGTCACTGCTATAAAAGAAAAACTAAAATCTTGTCCACCACGCTTGGGAAAGCGCAA : ATTCGTGCCTGCTCCTGCTCAGGTTTTACTGTCTGAAGAGATTACTGGTTCCCTGCGTAAATTAAAG : GGATGTTGCACCCTTGCAAGAGATCGATTTAAAAGCCTGGAGAAAAGGGGACTAGTTGTTCCTTCAAAAAAGAGTAGCAG : GAAATAGAGTGAATTGCAAGTAACACAGATAAATGTTTTCATCACCGCACTATGAGACCATCATCCCGATCACCTGGATGAGAGACACTGTAGACAGCAAGGTGTTGGTTTATGTCTGCAAATTTGGAGTGGTAGAGCTGGCTGCTCTTACTGTTAGCAAAATGGAGATGTAGATCTGTTTATCTTACTGATGCATATGGTTCATTACACAATATTTTATAGTCATGGTCAAGTTACTTTGGGAGCAAAAGTGATAATTAATTACTGATGTATCTGGAGGCAGAAGATTGGTGTGATTTCTCTTGATGAACCAGAAATGATTCCCAGAGTCAGCCTTTTTTAAATTTTAAAATGGGAACTCTCATAATCAATATGTACCCCAAAGTTTTTAATTACTCTAATTAGGTCAACTTTTTATTTGATCACATTAGATCAACTATATATCACAAATTTTGATTTTCAAGACTTGAAAGACAACATTTTCTACT</gDNA_template>
            <first_frame> V  F  G  A  L  I  P  K  S  K  L  T  G  H  S  L  Q  L  S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  L :   E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  M  N  W  S  S  K  P  K  R :   S  P  R  L  L  L  Y  L  L  W  K  L  S  L  Q  D  A  H  S  I  L  H  P  K  V  I  R :   M  H  *  L  V  L  L  Q  M  K  C  R  K  F  I  E  M  N  W  V  R  S  L  F  H  W  L  F  L  E  R  *  S  M  K  K  I :   C  I  S  L  K  R  T  V  G  V  T  R  R  M  K  I  *  W  K  T  E  K  Q  I  W  I  K   : G  R  K  S  P  K  C  *  L  K  L  R  R  I  D  G  L  D  A  K  N  S  *  K  Q  K  L  K  Q  Q  K  Q  H  N  S  P  K  R  L  I   : A  Y  R  I  L  F  K  K  *  R  E  R  K  E  K  N  R  N  D  I  Y  V  V  S  L  L  *  K  K  N  *  N  L  V  H  H  A  W  E  S  A   : N  S  C  L  L  L  L  R  F  Y  C  L  K  R  L  L  V  P  C  V  N  *  R :   D  V  A  P  L  Q  E  I  D  L  K  A  W  R  K  G  D  *  L  F  L  Q  K  R  V  A   : G  N  R  V  N  C  K  *  H  R  *  M  F  S  S  P  H  Y  E  T  I  I  P  I  T  W  M  R  D  T  V  D  S  K  V  L  V  Y  V  C  K  F  G  V  V  E  L  A  A  L  T  V  S  K  M  E  M  *  I  C  L  S  Y  *  C  I  W  F  I  T  Q  Y  F  I  V  M  V  K  L  L  W  E  Q  K  *  *  L  I  T  D  V  S  G  G  R  R  L  V  *  F  L  L  M  N  Q  K  *  F  P  E  S  A  F  F  K  F  *  N  G  N  S  H  N  Q  Y  V  P  Q  S  F  *  L  L  *  L  G  Q  L  F  I  *  S  H  *  I  N  Y  I  S  Q  I  L  I  F  K  T  *  K  T  T  F  S  T </first_frame>
            <second_frame>  Y  L  E  P  *  F  L  N  Q  N  S  Q  A  T  A  S  S  S  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D   : *  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   *  T  G  H  Q  N  Q  K   : E  A  Q  D  F  C  Y  T  C  C  G  S  *  A  S  R  M  L  I  Q  S  S  I  R  K  S  S   : G  C  I  S  L  C  C  C  R  *  N  A  E  N  L  *  K  *  I  G  S  G  A  Y  S  I  G  C  S  W  R  G  S  Q  *  R  R   : Y  V  F  P  *  S  G  Q  W  E  *  H  G  E  *  K  S  S  G  R  R  K  N  R  F  G  *  K  :  A  A  K  A  Q  N  A  D  S  S  *  E  E  S  T  G  *  T  Q  R  T  V  E  S  R  S  *  S  N  K  S  S  T  T  L  Q  R  D  *  *  :  L  T  G  Y  Y  S  R  N  R  E  R  G  R  R  K  T  E  T  T  S  T  S  C  H  C  Y  K  R  K  T  K  I  L  S  T  T  L  G  K  A  Q  :  I  R  A  C  S  C  S  G  F  T  V  *  R  D  Y  W  F  P  A  *  I  K   : G  M  L  H  P  C  K  R  S  I  *  K  P  G  E  K  G  T  S  C  S  F  K  K  E  *  Q  :  E  I  E  *  I  A  S  N  T  D  K  C  F  H  H  R  T  M  R  P  S  S  R  S  P  G  *  E  T  L  *  T  A  R  C  W  F  M  S  A  N  L  E  W  *  S  W  L  L  L  L  L  A  K  W  R  C  R  S  V  Y  L  T  D  A  Y  G  S  L  H  N  I  L  *  S  W  S  S  Y  F  G  S  K  S  D  N  *  L  L  M  Y  L  E  A  E  D  W  C  D  F  S  *  *  T  R  N  D  S  Q  S  Q  P  F  L  N  F  K  M  G  T  L  I  I  N  M  Y  P  K  V  F  N  Y  S  N  *  V  N  F  L  F  D  H  I  R  S  T  I  Y  H  K  F  *  F  S  R  L  E  R  Q  H  F  L   </second_frame>
            <third_frame>   I  W  S  P  N  S  *  I  K  T  H  R  P  Q  P  P  A  L  S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  :  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : D  E  L  V  I  K  T  K  K  :  K  P  K  T  S  V  I  P  A  V  E  V  E  P  P  G  C  S  F  N  P  P  S  E  S  H  Q  :  D  A  L  A  C  A  V  A  D  E  M  Q  K  I  Y  R  N  E  L  G  P  E  P  I  P  L  V  V  P  G  E  V  V  N  E  E  D  :  M  Y  F  L  E  A  D  S  G  S  D  T  E  N  E  N  L  V  E  D  G  K  T  D  L  D  K  R :   P  Q  K  P  K  M  L  T  Q  V  E  K  N  R  R  A  R  R  K  E  Q  L  K  A  E  A  E  A  T  K  A  A  Q  L  S  K  E  I  D  S :   L  P  D  I  I  Q  E  I  E  R  E  E  G  E  K  Q  K  R  H  L  R  R  V  T  A  I  K  E  K  L  K  S  C  P  P  R  L  G  K  R  K :   F  V  P  A  P  A  Q  V  L  L  S  E  E  I  T  G  S  L  R  K  L  K  :  G  C  C  T  L  A  R  D  R  F  K  S  L  E  K  R  G  L  V  V  P  S  K  K  S  S  R :   K  *  S  E  L  Q  V  T  Q  I  N  V  F  I  T  A  L  *  D  H  H  P  D  H  L  D  E  R  H  C  R  Q  Q  G  V  G  L  C  L  Q  I  W  S  G  R  A  G  C  S  Y  C  *  Q  N  G  D  V  D  L  F  I  L  L  M  H  M  V  H  Y  T  I  F  Y  S  H  G  Q  V  T  L  G  A  K  V  I  I  N  Y  *  C  I  W  R  Q  K  I  G  V  I  S  L  D  E  P  E  M  I  P  R  V  S  L  F  *  I  L  K  W  E  L  S  *  S  I  C  T  P  K  F  L  I  T  L  I  R  S  T  F  Y  L  I  T  L  D  Q  L  Y  I  T  N  F  D  F  Q  D  L  K  D  N  I  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22664" stop="22703"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24377" stop="24457"/>
                    <exon start="24546" stop="24656"/>
                    <exon start="24774" stop="24856"/>
                    <exon start="26044" stop="26163"/>
                    <exon start="26256" stop="26378"/>
                    <exon start="26634" stop="26700"/>
                    <exon start="26791" stop="26870"/>
                    <exon start="27409" stop="27415"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSDSQGYCSTGSKDELVIKTKKKPKTSVIPAVEVEPPGCSFNPPSESHQDALACAVADEMQKIYRNELGPEPIPLVVPGEVVNEEDMYFLEADSGSDTENENLVEDGKTDLDKRPQKPKMLTQVEKNRRARRKEQLKAEAEATKAAQLSKEIDSLPDIIQEIEREEGEKQKRHLRRVTAIKEKLKSCPPRLGKRKFVPAPAQVLLSEEITGSLRKLKGCCTLARDRFKSLEKRGLVVPSKKSSRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21696" stop="21806"/>
                    <exon start="22534" stop="22674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRRILKISLTTPLKMLFQAVLLLKFPVTLSFMSTNPEIFLSNGKLKNTGRKYFDMIVYYKAMPLLNLYLLQLGRNPRRKVNFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="18619" e_stop="18789"/>
            <exon e_start="21634" e_stop="21806"/>
            <exon e_start="22534" e_stop="22703"/>
            <exon e_start="22872" e_stop="22920"/>
            <exon e_start="23008" e_stop="23033"/>
            <exon e_start="24373" e_stop="24412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.528" e_score="0.942"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.825"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="18619" e_stop="18789" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.528">
            <gDNA_intron_boundary i_start="18790" i_stop="21633" i_length="2844"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21634" e_stop="21806" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="21807" i_stop="22533" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22534" e_stop="22703" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22704" i_stop="22871" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22872" e_stop="22920" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22921" i_stop="23007" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23008" e_stop="23033" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23034" i_stop="24372" i_length="1339"/>
          </intron>
          <exon e_serial="6" e_score="0.825">
            <gDNA_exon_boundary e_start="24373" e_stop="24412" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18619" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18649" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
              <exon start="24373" stop="24412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18665" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18671" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18671" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18674" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18704" stop="18789"/>
              <exon start="21634" stop="21806"/>
              <exon start="22534" stop="22703"/>
              <exon start="22872" stop="22920"/>
              <exon start="23008" stop="23033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTATGTGTATTTGGAGCCCTAATTCCTAAATCAAAACTCACAGGCCACAGCCTCCAGCTCTCTCTTTTTTGTTCTCTGAACTCTCAGAGACACTGTGTCGGCGACCAGCAAGCACAGCGGCGCAGCAAAACTCTCGTCTGTCGACTCTCTATCTCTCAGCGTGACGGATT : TAGAGAGATGGGGAAGAATAAGAGCTCAAGGAAAGGGAAGAAGGCATGGAGAGCCAACATAAGTACGGAGGATATTGAAGATTTCTTTGACAACTCCACTAAAGATGCTCTTTCAGGCGGTTCTCTTGCTCAAGTTCCCAGTGACTCTCTCTTTTATGTCGACAAATCCAGAG : ATCTTTCTGTCAAACGGAAAATTGAAAAACACCGGGAGAAAGTACTTCGATATGATAGTATACTACAAAGCAATGCCTTTGTTGAACCTGTACCTTCTTCAACTGGGAAGAAATCCAAGAAGAAAAGTAAACTTCAGATAGCCAAGGATACTGCTCAACAGGGTCAAAAG : GATTCGTCTGGTGGAGACTCTGGCATGGTTGACATTTGGAATGATAAAG : ATGAACTGGTCATCAAAACCAAAAAG : ACAGAAGCCCAAGACTTCTGTTATACCTGCTGTGGAAGTT</gDNA_template>
            <first_frame> P  M  C  I  W  S  P  N  S  *  I  K  T  H  R  P  Q  P  P  A  L  S  F  L  F  S  E  L  S  E  T  L  C  R  R  P  A  S  T  A  A  Q  Q  N  S  R  L  S  T  L  Y  L  S  A  *  R  I  :  *  R  D  G  E  E  *  E  L  K  E  R  E  E  G  M  E  S  Q  H  K  Y  G  G  Y  *  R  F  L  *  Q  L  H  *  R  C  S  F  R  R  F  S  C  S  S  S  Q  *  L  S  L  L  C  R  Q  I  Q  R :   S  F  C  Q  T  E  N  *  K  T  P  G  E  S  T  S  I  *  *  Y  T  T  K  Q  C  L  C  *  T  C  T  F  F  N  W  E  E  I  Q  E  E  K  *  T  S  D  S  Q  G  Y  C  S  T  G  S  K   : G  F  V  W  W  R  L  W  H  G  *  H  L  E  *  *  R :   *  T  G  H  Q  N  Q  K   : D  R  S  P  R  L  L  L  Y  L  L  W  K   </first_frame>
            <second_frame>  L  C  V  F  G  A  L  I  P  K  S  K  L  T  G  H  S  L  Q  L  S  L  F  C  S  L  N  S  Q  R  H  C  V  G  D  Q  Q  A  Q  R  R  S  K  T  L  V  C  R  L  S  I  S  Q  R  D  G  F :   R  E  M  G  K  N  K  S  S  R  K  G  K  K  A  W  R  A  N  I  S  T  E  D  I  E  D  F  F  D  N  S  T  K  D  A  L  S  G  G  S  L  A  Q  V  P  S  D  S  L  F  Y  V  D  K  S  R   : D  L  S  V  K  R  K  I  E  K  H  R  E  K  V  L  R  Y  D  S  I  L  Q  S  N  A  F  V  E  P  V  P  S  S  T  G  K  K  S  K  K  K  S  K  L  Q  I  A  K  D  T  A  Q  Q  G  Q  K  :  D  S  S  G  G  D  S  G  M  V  D  I  W  N  D  K   : D  E  L  V  I  K  T  K  K  :  T  E  A  Q  D  F  C  Y  T  C  C  G  S  </second_frame>
            <third_frame>   Y  V  Y  L  E  P  *  F  L  N  Q  N  S  Q  A  T  A  S  S  S  L  F  F  V  L  *  T  L  R  D  T  V  S  A  T  S  K  H  S  G  A  A  K  L  S  S  V  D  S  L  S  L  S  V  T  D   : L  E  R  W  G  R  I  R  A  Q  G  K  G  R  R  H  G  E  P  T  *  V  R  R  I  L  K  I  S  L  T  T  P  L  K  M  L  F  Q  A  V  L  L  L  K  F  P  V  T  L  S  F  M  S  T  N  P  E  :  I  F  L  S  N  G  K  L  K  N  T  G  R  K  Y  F  D  M  I  V  Y  Y  K  A  M  P  L  L  N  L  Y  L  L  Q  L  G  R  N  P  R  R  K  V  N  F  R  *  P  R  I  L  L  N  R  V  K  R :   I  R  L  V  E  T  L  A  W  L  T  F  G  M  I  K  :  M  N  W  S  S  K  P  K  R :   Q  K  P  K  T  S  V  I  P  A  V  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18620" stop="18789"/>
                    <exon start="21634" stop="21806"/>
                    <exon start="22534" stop="22703"/>
                    <exon start="22872" stop="22920"/>
                    <exon start="23008" stop="23033"/>
                    <exon start="24373" stop="24411"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCVFGALIPKSKLTGHSLQLSLFCSLNSQRHCVGDQQAQRRSKTLVCRLSISQRDGFREMGKNKSSRKGKKAWRANISTEDIEDFFDNSTKDALSGGSLAQVPSDSLFYVDKSRDLSVKRKIEKHREKVLRYDSILQSNAFVEPVPSSTGKKSKKKSKLQIAKDTAQQGQKDSSGGDSGMVDIWNDKDELVIKTKKTEAQDFCYTCCGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43176" PGL_stop="42608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43176" e_stop="42608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43176" e_stop="42608" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43176" stop="42608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43069" stop="42626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTTAAGTTGAAGTCAATAAATGGTGTTGTGAATGGAGTTAACATAGTGGATAATATGTTTTCTGGATCAAATAAAGGGATTGATATTGTTCAATTGGATCAAAGTAATGGACCATTTAAGACAATTGAACAAGTTGTGGTGGATAGAAATAATGTTAAGGGGATGAATCTCAAGGGCACAATTGGAAGTGGAGTTGTTGAAGGGAATGGTACATCATGGACTATGGATTTTAATCCAATTCTTGTATTTCCTAACCTTATTAAACATGTTCAGTACACGTTTTTCCCTAGCGGGAACGTGTTCGTTAATCATGCTTTGAGAAATATATCGAATAATAAGGTTATCGTTGAATCTAACGTTCAAGTTCCAGCAAGGGTTCTCGTGACGGTGGATCAAGGGAAATGAGCTTATTTGAGCTAACAAAAATTAGGGATTTATCTAGCTAGTTATTATGTTACAAAGGTGATTAGGTCTCTTTGAATCATTCTTGAAAAAAGAAATGTTTATGTTTAAGAAAAATTCAAAAAGTATAATCCAGCAATACAAGGAATGCTTTTTGATTGGCA</gDNA_template>
            <first_frame> F  V  K  L  K  S  I  N  G  V  V  N  G  V  N  I  V  D  N  M  F  S  G  S  N  K  G  I  D  I  V  Q  L  D  Q  S  N  G  P  F  K  T  I  E  Q  V  V  V  D  R  N  N  V  K  G  M  N  L  K  G  T  I  G  S  G  V  V  E  G  N  G  T  S  W  T  M  D  F  N  P  I  L  V  F  P  N  L  I  K  H  V  Q  Y  T  F  F  P  S  G  N  V  F  V  N  H  A  L  R  N  I  S  N  N  K  V  I  V  E  S  N  V  Q  V  P  A  R  V  L  V  T  V  D  Q  G  K  *  A  Y  L  S  *  Q  K  L  G  I  Y  L  A  S  Y  Y  V  T  K  V  I  R  S  L  *  I  I  L  E  K  R  N  V  Y  V  *  E  K  F  K  K  Y  N  P  A  I  Q  G  M  L  F  D  W   </first_frame>
            <second_frame>  L  L  S  *  S  Q  *  M  V  L  *  M  E  L  T  *  W  I  I  C  F  L  D  Q  I  K  G  L  I  L  F  N  W  I  K  V  M  D  H  L  R  Q  L  N  K  L  W  W  I  E  I  M  L  R  G  *  I  S  R  A  Q  L  E  V  E  L  L  K  G  M  V  H  H  G  L  W  I  L  I  Q  F  L  Y  F  L  T  L  L  N  M  F  S  T  R  F  S  L  A  G  T  C  S  L  I  M  L  *  E  I  Y  R  I  I  R  L  S  L  N  L  T  F  K  F  Q  Q  G  F  S  *  R  W  I  K  G  N  E  L  I  *  A  N  K  N  *  G  F  I  *  L  V  I  M  L  Q  R  *  L  G  L  F  E  S  F  L  K  K  E  M  F  M  F  K  K  N  S  K  S  I  I  Q  Q  Y  K  E  C  F  L  I  G  </second_frame>
            <third_frame>   C  *  V  E  V  N  K  W  C  C  E  W  S  *  H  S  G  *  Y  V  F  W  I  K  *  R  D  *  Y  C  S  I  G  S  K  *  W  T  I  *  D  N  *  T  S  C  G  G  *  K  *  C  *  G  D  E  S  Q  G  H  N  W  K  W  S  C  *  R  E  W  Y  I  M  D  Y  G  F  *  S  N  S  C  I  S  *  P  Y  *  T  C  S  V  H  V  F  P  *  R  E  R  V  R  *  S  C  F  E  K  Y  I  E  *  *  G  Y  R  *  I  *  R  S  S  S  S  K  G  S  R  D  G  G  S  R  E  M  S  L  F  E  L  T  K  I  R  D  L  S  S  *  L  L  C  Y  K  G  D  *  V  S  L  N  H  S  *  K  K  K  C  L  C  L  R  K  I  Q  K  V  *  S  S  N  T  R  N  A  F  *  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43176" stop="42769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVKLKSINGVVNGVNIVDNMFSGSNKGIDIVQLDQSNGPFKTIEQVVVDRNNVKGMNLKGTIGSGVVEGNGTSWTMDFNPILVFPNLIKHVQYTFFPSGNVFVNHALRNISNNKVIVESNVQVPARVLVTVDQGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="44562" PGL_stop="43192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44562" e_stop="44336"/>
            <exon e_start="44261" e_stop="44025"/>
            <exon e_start="43770" e_stop="43192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44562" e_stop="44336" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="44335" i_stop="44262" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44261" e_stop="44025" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.990">
            <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43770" e_stop="43192" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44562" stop="44336"/>
              <exon start="44261" stop="44025"/>
              <exon start="43770" stop="43633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44541" stop="44336"/>
              <exon start="44261" stop="44090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44541" stop="44361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44538" stop="44336"/>
              <exon start="44261" stop="44025"/>
              <exon start="43770" stop="43527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44336"/>
              <exon start="44261" stop="44025"/>
              <exon start="43770" stop="43428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44336"/>
              <exon start="44261" stop="44025"/>
              <exon start="43770" stop="43516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44336"/>
              <exon start="44261" stop="44025"/>
              <exon start="43770" stop="43567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44336"/>
              <exon start="44261" stop="44025"/>
              <exon start="43770" stop="43639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44247" stop="44025"/>
              <exon start="43770" stop="43351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44240" stop="44025"/>
              <exon start="43770" stop="43285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44076" stop="44025"/>
              <exon start="43770" stop="43192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44075" stop="44025"/>
              <exon start="43770" stop="43275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACATAGAAGGCAAACAGCATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACT : GTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG : ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCTGGTTTAACACAAACAAGGATTGTGGATTCTTATTTGGATTACACTGGAATTGTGGCAGAGGATCCTGTTCAACTCACAATTTCAAACACATTT</gDNA_template>
            <first_frame> S  H  R  R  Q  T  A  W  E  K  K  H  G  L  C  P  C  F  L  S  L  L  V  Y  P  M  F  M  E  M  F  I  H  M  I  I  N  *  G  N  Y  K  L  L  Q  L  K  L  L  V  A  I  R  F  L  L  F  L  L  L  L  L  L  D  F  L  H  R  H  H  H  H  Q  *  *  L :   L  H  Q  V  Q  K  Y  I  M  *  H  H  M  V  L  I  Q  L  E  N  *  I  A  H  K  L  F  Y  K  Q  F  L  M  H  L  K  V  H  L  M  V  S  *  C  K  E  F  Q  I  L  V  V  L  K  L  I  L  K  V  E  I  I  *  L  A  N  H  Y  N  S  L  L  L  A  V  A  I  *  * :   F  M  E  V  P  *  K  L  Q  M  I  F  Q  E  M  D  I  Y  S  I  Y  R  H  L  Q  A  T  V  L  S  F  Y  S  N  S  *  L  *  E  I  Y  Y  L  M  Q  I  S  E  E  A  V  Y  K  *  *  I  H  *  E  Q  A  L  T  I  V  T  S  H  I  S  Q  Q  M  V  S  *  P  K  V  D  M  K  H  T  L  E  I  H  F  L  D  N  I  S  L  L  V  V  I  K  G  R  G  I  S  P  A  P  R  *  I  *  R  E  M  I  I  L  L  L  M  *  *  Y  S  Q  L  K  L  V  *  L  Y  Q  V  K  Q  I  C  Y  Q  V  Y  I  V  T  I  R  L  Q  D  L  V  G  L  E  F  T  *  N  S  L  V  *  H  K  Q  G  L  W  I  L  I  W  I  T  L  E  L  W  Q  R  I  L  F  N  S  Q  F  Q  T  H   </first_frame>
            <second_frame>  H  I  E  G  K  Q  H  G  R  K  N  M  G  F  V  L  V  F  Y  L  C  L  S  I  Q  C  L  W  K  C  S  F  I  *  S  S  I  E  E  I  T  S  F  Y  S  *  N  C  *  S  R  F  D  F  S  F  S  F  S  F  S  Y  *  I  F  S  I  A  I  I  T  I  S  N  N   : C  Y  T  K  S  K  S  I  S  C  N  I  I  W  C  *  S  N  W  K  I  R  *  H  T  S  Y  S  T  S  N  F  *  C  T  *  R  S  I  *  W  F  L  N  A  R  N  F  K  S  W  W  C  S  N  *  S  *  R  W  K  L  F  N  *  P  T  I  T  I  P  Y  C  *  P  W  Q  S  N   : D  S  W  R  Y  P  K  S  F  R  *  F  S  K  R  W  I  F  T  R  F  I  D  I  F  K  Q  R  S  *  V  F  I  R  I  H  N  F  K  R  F  I  T  *  C  K  F  Q  R  R  R  Y  T  S  D  K  F  T  K  N  K  H  *  Q  L  L  H  H  T  F  H  N  K  W  Y  H  S  Q  R  W  T  *  N  I  H  *  K  F  I  S  W  T  T  Y  H  C  W  W  *  *  R  G  E  E  F  L  R  H  R  D  K  S  S  G  K  *  *  F  C  Y  *  C  S  D  I  L  S  *  N  W  C  N  C  I  R  S  S  K  F  V  I  R  Y  T  L  L  Q  *  G  Y  R  I  W  W  D  W  N  L  L  K  T  P  W  F  N  T  N  K  D  C  G  F  L  F  G  L  H  W  N  C  G  R  G  S  C  S  T  H  N  F  K  H  I  </second_frame>
            <third_frame>   T  *  K  A  N  S  M  G  E  K  T  W  A  L  S  L  F  F  I  F  A  C  L  S  N  V  Y  G  N  V  H  S  Y  D  H  Q  L  R  K  L  Q  A  F  T  A  E  I  A  S  R  D  S  I  S  P  F  P  S  P  S  P  T  R  F  S  P  S  P  S  S  P  S  V  I  T  :  V  T  P  S  P  K  V  Y  H  V  T  S  Y  G  A  D  P  T  G  K  L  D  S  T  Q  A  I  L  Q  A  I  S  D  A  L  E  G  P  S  N  G  F  L  M  Q  G  I  S  N  L  G  G  A  Q  I  N  L  E  G  G  N  Y  L  I  S  Q  P  L  Q  F  P  I  V  S  R  G  N  L  M  :  I  H  G  G  T  L  K  A  S  D  D  F  P  R  D  G  Y  L  L  D  L  S  T  S  S  S  N  G  P  E  F  L  F  E  F  I  T  L  R  D  L  L  L  D  A  N  F  R  G  G  G  I  Q  V  I  N  S  L  R  T  S  I  D  N  C  Y  I  T  H  F  T  T  N  G  I  I  A  K  G  G  H  E  T  Y  I  R  N  S  F  L  G  Q  H  I  T  A  G  G  D  K  G  E  R  N  F  S  G  T  A  I  N  L  A  G  N  D  N  S  V  T  D  V  V  I  F  S  A  E  I  G  V  I  V  S  G  Q  A  N  L  L  S  G  I  H  C  Y  N  K  A  T  G  F  G  G  T  G  I  Y  L  K  L  P  G  L  T  Q  T  R  I  V  D  S  Y  L  D  Y  T  G  I  V  A  E  D  P  V  Q  L  T  I  S  N  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44554" stop="44336"/>
                    <exon start="44261" stop="44025"/>
                    <exon start="43770" stop="43192"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KANSMGEKTWALSLFFIFACLSNVYGNVHSYDHQLRKLQAFTAEIASRDSISPFPSPSPTRFSPSPSSPSVITVTPSPKVYHVTSYGADPTGKLDSTQAILQAISDALEGPSNGFLMQGISNLGGAQINLEGGNYLISQPLQFPIVSRGNLMIHGGTLKASDDFPRDGYLLDLSTSSSNGPEFLFEFITLRDLLLDANFRGGGIQVINSLRTSIDNCYITHFTTNGIIAKGGHETYIRNSFLGQHITAGGDKGERNFSGTAINLAGNDNSVTDVVIFSAEIGVIVSGQANLLSGIHCYNKATGFGGTGIYLKLPGLTQTRIVDSYLDYTGIVAEDPVQLTISNTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44552" e_stop="44025"/>
            <exon e_start="43770" e_stop="43192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44552" e_stop="44025" e_length="528"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.990">
            <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43770" e_stop="43192" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44552" stop="44025"/>
              <exon start="43770" stop="43410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44551" stop="44025"/>
              <exon start="43770" stop="43518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44541" stop="44361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44247" stop="44025"/>
              <exon start="43770" stop="43351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44240" stop="44025"/>
              <exon start="43770" stop="43285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44076" stop="44025"/>
              <exon start="43770" stop="43192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44075" stop="44025"/>
              <exon start="43770" stop="43275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAAACAGCATGGGAGAAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTCTCCTACTAGATTTTCTCCATCGCCATCATCACCATCAGTAATAACTGTAAGTCTTTTTAACTTTTTTCCTCAATTTATGTTAAACGTATCGTAAATTACCTATTTTATGTATTATATTAGGTTACACCAAGTCCAAAAGTATATCATGTAACATCATATGGTGCTGATCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG : ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCTGGTTTAACACAAACAAGGATTGTGGATTCTTATTTGGATTACACTGGAATTGTGGCAGAGGATCCTGTTCAACTCACAATTTCAAACACATTT</gDNA_template>
            <first_frame> G  K  Q  H  G  R  K  N  M  G  F  V  L  V  F  Y  L  C  L  S  I  Q  C  L  W  K  C  S  F  I  *  S  S  I  E  E  I  T  S  F  Y  S  *  N  C  *  S  R  F  D  F  S  F  S  F  S  F  S  Y  *  I  F  S  I  A  I  I  T  I  S  N  N  C  K  S  F  *  L  F  S  S  I  Y  V  K  R  I  V  N  Y  L  F  Y  V  L  Y  *  V  T  P  S  P  K  V  Y  H  V  T  S  Y  G  A  D  P  T  G  K  L  D  S  T  Q  A  I  L  Q  A  I  S  D  A  L  E  G  P  S  N  G  F  L  M  Q  G  I  S  N  L  G  G  A  Q  I  N  L  E  G  G  N  Y  L  I  S  Q  P  L  Q  F  P  I  V  S  R  G  N  L  M  :  I  H  G  G  T  L  K  A  S  D  D  F  P  R  D  G  Y  L  L  D  L  S  T  S  S  S  N  G  P  E  F  L  F  E  F  I  T  L  R  D  L  L  L  D  A  N  F  R  G  G  G  I  Q  V  I  N  S  L  R  T  S  I  D  N  C  Y  I  T  H  F  T  T  N  G  I  I  A  K  G  G  H  E  T  Y  I  R  N  S  F  L  G  Q  H  I  T  A  G  G  D  K  G  E  R  N  F  S  G  T  A  I  N  L  A  G  N  D  N  S  V  T  D  V  V  I  F  S  A  E  I  G  V  I  V  S  G  Q  A  N  L  L  S  G  I  H  C  Y  N  K  A  T  G  F  G  G  T  G  I  Y  L  K  L  P  G  L  T  Q  T  R  I  V  D  S  Y  L  D  Y  T  G  I  V  A  E  D  P  V  Q  L  T  I  S  N  T  F </first_frame>
            <second_frame>  A  N  S  M  G  E  K  T  W  A  L  S  L  F  F  I  F  A  C  L  S  N  V  Y  G  N  V  H  S  Y  D  H  Q  L  R  K  L  Q  A  F  T  A  E  I  A  S  R  D  S  I  S  P  F  P  S  P  S  P  T  R  F  S  P  S  P  S  S  P  S  V  I  T  V  S  L  F  N  F  F  P  Q  F  M  L  N  V  S  *  I  T  Y  F  M  Y  Y  I  R  L  H  Q  V  Q  K  Y  I  M  *  H  H  M  V  L  I  Q  L  E  N  *  I  A  H  K  L  F  Y  K  Q  F  L  M  H  L  K  V  H  L  M  V  S  *  C  K  E  F  Q  I  L  V  V  L  K  L  I  L  K  V  E  I  I  *  L  A  N  H  Y  N  S  L  L  L  A  V  A  I  *  * :   F  M  E  V  P  *  K  L  Q  M  I  F  Q  E  M  D  I  Y  S  I  Y  R  H  L  Q  A  T  V  L  S  F  Y  S  N  S  *  L  *  E  I  Y  Y  L  M  Q  I  S  E  E  A  V  Y  K  *  *  I  H  *  E  Q  A  L  T  I  V  T  S  H  I  S  Q  Q  M  V  S  *  P  K  V  D  M  K  H  T  L  E  I  H  F  L  D  N  I  S  L  L  V  V  I  K  G  R  G  I  S  P  A  P  R  *  I  *  R  E  M  I  I  L  L  L  M  *  *  Y  S  Q  L  K  L  V  *  L  Y  Q  V  K  Q  I  C  Y  Q  V  Y  I  V  T  I  R  L  Q  D  L  V  G  L  E  F  T  *  N  S  L  V  *  H  K  Q  G  L  W  I  L  I  W  I  T  L  E  L  W  Q  R  I  L  F  N  S  Q  F  Q  T  H   </second_frame>
            <third_frame>   Q  T  A  W  E  K  K  H  G  L  C  P  C  F  L  S  L  L  V  Y  P  M  F  M  E  M  F  I  H  M  I  I  N  *  G  N  Y  K  L  L  Q  L  K  L  L  V  A  I  R  F  L  L  F  L  L  L  L  L  L  D  F  L  H  R  H  H  H  H  Q  *  *  L  *  V  F  L  T  F  F  L  N  L  C  *  T  Y  R  K  L  P  I  L  C  I  I  L  G  Y  T  K  S  K  S  I  S  C  N  I  I  W  C  *  S  N  W  K  I  R  *  H  T  S  Y  S  T  S  N  F  *  C  T  *  R  S  I  *  W  F  L  N  A  R  N  F  K  S  W  W  C  S  N  *  S  *  R  W  K  L  F  N  *  P  T  I  T  I  P  Y  C  *  P  W  Q  S  N   : D  S  W  R  Y  P  K  S  F  R  *  F  S  K  R  W  I  F  T  R  F  I  D  I  F  K  Q  R  S  *  V  F  I  R  I  H  N  F  K  R  F  I  T  *  C  K  F  Q  R  R  R  Y  T  S  D  K  F  T  K  N  K  H  *  Q  L  L  H  H  T  F  H  N  K  W  Y  H  S  Q  R  W  T  *  N  I  H  *  K  F  I  S  W  T  T  Y  H  C  W  W  *  *  R  G  E  E  F  L  R  H  R  D  K  S  S  G  K  *  *  F  C  Y  *  C  S  D  I  L  S  *  N  W  C  N  C  I  R  S  S  K  F  V  I  R  Y  T  L  L  Q  *  G  Y  R  I  W  W  D  W  N  L  L  K  T  P  W  F  N  T  N  K  D  C  G  F  L  F  G  L  H  W  N  C  G  R  G  S  C  S  T  H  N  F  K  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44261" stop="44025"/>
                    <exon start="43770" stop="43192"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTPSPKVYHVTSYGADPTGKLDSTQAILQAISDALEGPSNGFLMQGISNLGGAQINLEGGNYLISQPLQFPIVSRGNLMIHGGTLKASDDFPRDGYLLDLSTSSSNGPEFLFEFITLRDLLLDANFRGGGIQVINSLRTSIDNCYITHFTTNGIIAKGGHETYIRNSFLGQHITAGGDKGERNFSGTAINLAGNDNSVTDVVIFSAEIGVIVSGQANLLSGIHCYNKATGFGGTGIYLKLPGLTQTRIVDSYLDYTGIVAEDPVQLTISNTF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44551" stop="44288"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANSMGEKTWALSLFFIFACLSNVYGNVHSYDHQLRKLQAFTAEIASRDSISPFPSPSPTRFSPSPSSPSVITVSLFNFFPQFMLNVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44535" e_stop="44382"/>
            <exon e_start="44214" e_stop="44025"/>
            <exon e_start="43770" e_stop="43192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.969" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="44535" e_stop="44382" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44381" i_stop="44215" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44214" e_stop="44025" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.990">
            <gDNA_intron_boundary i_start="44024" i_stop="43771" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43770" e_stop="43192" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44382"/>
              <exon start="44214" stop="44025"/>
              <exon start="43770" stop="43700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44076" stop="44025"/>
              <exon start="43770" stop="43192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44075" stop="44025"/>
              <exon start="43770" stop="43275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACATGGGCTTTGTCCTTGTTTTTTATCTTTGCTTGTCTATCCAATGTTTATGGAAATGTTCATTCATATGATCATCAATTGAGGAAATTACAAGCTTTTACAGCTGAAATTGCTAGTCGCGATTCGATTTCTCCTTTTCCTTCTCCTTC : TCCAACTGGAAAATTAGATAGCACACAAGCTATTCTACAAGCAATTTCTGATGCACTTGAAGGTCCATCTAATGGTTTCTTAATGCAAGGAATTTCAAATCTTGGTGGTGCTCAAATTAATCTTGAAGGTGGAAATTATTTAATTAGCCAACCATTACAATTCCCTATTGTTAGCCGTGGCAATCTAATG : ATTCATGGAGGTACCCTAAAAGCTTCAGATGATTTTCCAAGAGATGGATATTTACTCGATTTATCGACATCTTCAAGCAACGGTCCTGAGTTTTTATTCGAATTCATAACTTTAAGAGATTTATTACTTGATGCAAATTTCAGAGGAGGCGGTATACAAGTGATAAATTCACTAAGAACAAGCATTGACAATTGTTACATCACACATTTCACAACAAATGGTATCATAGCCAAAGGTGGACATGAAACATACATTAGAAATTCATTTCTTGGACAACATATCACTGCTGGTGGTGATAAAGGGGAGAGGAATTTCTCCGGCACCGCGATAAATCTAGCGGGAAATGATAATTCTGTTACTGATGTAGTGATATTCTCAGCTGAAATTGGTGTAATTGTATCAGGTCAAGCAAATTTGTTATCAGGTATACATTGTTACAATAAGGCTACAGGATTTGGTGGGACTGGAATTTACTTAAAACTCCCTGGTTTAACACAAACAAGGATTGTGGATTCTTATTTGGATTACACTGGAATTGTGGCAGAGGATCCTGTTCAACTCACAATTTCAAACACATTT</gDNA_template>
            <first_frame> K  K  H  G  L  C  P  C  F  L  S  L  L  V  Y  P  M  F  M  E  M  F  I  H  M  I  I  N  *  G  N  Y  K  L  L  Q  L  K  L  L  V  A  I  R  F  L  L  F  L  L  L   : L  Q  L  E  N  *  I  A  H  K  L  F  Y  K  Q  F  L  M  H  L  K  V  H  L  M  V  S  *  C  K  E  F  Q  I  L  V  V  L  K  L  I  L  K  V  E  I  I  *  L  A  N  H  Y  N  S  L  L  L  A  V  A  I  *  * :   F  M  E  V  P  *  K  L  Q  M  I  F  Q  E  M  D  I  Y  S  I  Y  R  H  L  Q  A  T  V  L  S  F  Y  S  N  S  *  L  *  E  I  Y  Y  L  M  Q  I  S  E  E  A  V  Y  K  *  *  I  H  *  E  Q  A  L  T  I  V  T  S  H  I  S  Q  Q  M  V  S  *  P  K  V  D  M  K  H  T  L  E  I  H  F  L  D  N  I  S  L  L  V  V  I  K  G  R  G  I  S  P  A  P  R  *  I  *  R  E  M  I  I  L  L  L  M  *  *  Y  S  Q  L  K  L  V  *  L  Y  Q  V  K  Q  I  C  Y  Q  V  Y  I  V  T  I  R  L  Q  D  L  V  G  L  E  F  T  *  N  S  L  V  *  H  K  Q  G  L  W  I  L  I  W  I  T  L  E  L  W  Q  R  I  L  F  N  S  Q  F  Q  T  H   </first_frame>
            <second_frame>  K  N  M  G  F  V  L  V  F  Y  L  C  L  S  I  Q  C  L  W  K  C  S  F  I  *  S  S  I  E  E  I  T  S  F  Y  S  *  N  C  *  S  R  F  D  F  S  F  S  F  S  F  :  S  N  W  K  I  R  *  H  T  S  Y  S  T  S  N  F  *  C  T  *  R  S  I  *  W  F  L  N  A  R  N  F  K  S  W  W  C  S  N  *  S  *  R  W  K  L  F  N  *  P  T  I  T  I  P  Y  C  *  P  W  Q  S  N   : D  S  W  R  Y  P  K  S  F  R  *  F  S  K  R  W  I  F  T  R  F  I  D  I  F  K  Q  R  S  *  V  F  I  R  I  H  N  F  K  R  F  I  T  *  C  K  F  Q  R  R  R  Y  T  S  D  K  F  T  K  N  K  H  *  Q  L  L  H  H  T  F  H  N  K  W  Y  H  S  Q  R  W  T  *  N  I  H  *  K  F  I  S  W  T  T  Y  H  C  W  W  *  *  R  G  E  E  F  L  R  H  R  D  K  S  S  G  K  *  *  F  C  Y  *  C  S  D  I  L  S  *  N  W  C  N  C  I  R  S  S  K  F  V  I  R  Y  T  L  L  Q  *  G  Y  R  I  W  W  D  W  N  L  L  K  T  P  W  F  N  T  N  K  D  C  G  F  L  F  G  L  H  W  N  C  G  R  G  S  C  S  T  H  N  F  K  H  I  </second_frame>
            <third_frame>   K  T  W  A  L  S  L  F  F  I  F  A  C  L  S  N  V  Y  G  N  V  H  S  Y  D  H  Q  L  R  K  L  Q  A  F  T  A  E  I  A  S  R  D  S  I  S  P  F  P  S  P  S :   P  T  G  K  L  D  S  T  Q  A  I  L  Q  A  I  S  D  A  L  E  G  P  S  N  G  F  L  M  Q  G  I  S  N  L  G  G  A  Q  I  N  L  E  G  G  N  Y  L  I  S  Q  P  L  Q  F  P  I  V  S  R  G  N  L  M  :  I  H  G  G  T  L  K  A  S  D  D  F  P  R  D  G  Y  L  L  D  L  S  T  S  S  S  N  G  P  E  F  L  F  E  F  I  T  L  R  D  L  L  L  D  A  N  F  R  G  G  G  I  Q  V  I  N  S  L  R  T  S  I  D  N  C  Y  I  T  H  F  T  T  N  G  I  I  A  K  G  G  H  E  T  Y  I  R  N  S  F  L  G  Q  H  I  T  A  G  G  D  K  G  E  R  N  F  S  G  T  A  I  N  L  A  G  N  D  N  S  V  T  D  V  V  I  F  S  A  E  I  G  V  I  V  S  G  Q  A  N  L  L  S  G  I  H  C  Y  N  K  A  T  G  F  G  G  T  G  I  Y  L  K  L  P  G  L  T  Q  T  R  I  V  D  S  Y  L  D  Y  T  G  I  V  A  E  D  P  V  Q  L  T  I  S  N  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44533" stop="44382"/>
                    <exon start="44214" stop="44025"/>
                    <exon start="43770" stop="43192"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTWALSLFFIFACLSNVYGNVHSYDHQLRKLQAFTAEIASRDSISPFPSPSPTGKLDSTQAILQAISDALEGPSNGFLMQGISNLGGAQINLEGGNYLISQPLQFPIVSRGNLMIHGGTLKASDDFPRDGYLLDLSTSSSNGPEFLFEFITLRDLLLDANFRGGGIQVINSLRTSIDNCYITHFTTNGIIAKGGHETYIRNSFLGQHITAGGDKGERNFSGTAINLAGNDNSVTDVVIFSAEIGVIVSGQANLLSGIHCYNKATGFGGTGIYLKLPGLTQTRIVDSYLDYTGIVAEDPVQLTISNTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56368" PGL_stop="53084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56368" e_stop="56231"/>
            <exon e_start="53878" e_stop="53768"/>
            <exon e_start="53306" e_stop="53084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56368" e_stop="56231" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56230" i_stop="53879" i_length="2352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53878" e_stop="53768" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.977">
            <gDNA_intron_boundary i_start="53767" i_stop="53307" i_length="461"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53306" e_stop="53084" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56368" stop="56231"/>
              <exon start="53878" stop="53768"/>
              <exon start="53306" stop="53084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56368" stop="56231"/>
              <exon start="53878" stop="53768"/>
              <exon start="53306" stop="53084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56368" stop="56231"/>
              <exon start="53878" stop="53768"/>
              <exon start="53306" stop="53095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAGATAATGCGATTGTTTCAGTACTTGAGTCAATGGAAATCCAAAGCCAATGACGGAATTCAACAATCACTTCTTATCGCCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATG : GTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGA : GTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTAGTCCTTATTACCTAATTCTAAATAATGATTGTTAATTTATTTTGGTAAGGATGCTTTACCATGAATTTGATTTTTTTGTACATTTGCAATATTTAAGGTATGAAATCAAGAAAAATGTTGAGAGACA</gDNA_template>
            <first_frame> E  K  I  M  R  L  F  Q  Y  L  S  Q  W  K  S  K  A  N  D  G  I  Q  Q  S  L  L  I  A  K  F  L  C  L  L  H  V  T  S  N  Y  V  F  S  P  V  M  :  V  P  K  G  H  V  W  I  Q  G  D  N  I  Y  A  S  K  D  S  R  Q  L  G  P  I  P  C  G  L  I  S  G  K  V  L  Y  R  :  V  W  P  P  E  C  F  G  S  L  *  P  Q  K  Q  C  I  V  L  K  I  Y  N  *  N  E  K  C  D  S  L  L  V  L  I  T  *  F  *  I  M  I  V  N  L  F  W  *  G  C  F  T  M  N  L  I  F  L  Y  I  C  N  I  *  G  M  K  S  R  K  M  L  R  D  </first_frame>
            <second_frame>  R  R  *  C  D  C  F  S  T  *  V  N  G  N  P  K  P  M  T  E  F  N  N  H  F  L  S  P  N  S  S  A  Y  Y  M  S  Q  A  T  T  F  S  L  Q  *  W :   F  Q  R  G  M  F  G  F  K  E  I  T  S  M  L  Q  R  I  H  D  S  S  G  Q  S  L  V  A  L  S  R  E  K  C  Y  T  E :   Y  G  L  Q  S  V  L  V  H  Y  D  H  K  N  N  V  L  Y  *  R  Y  T  I  K  M  R  N  V  I  L  Y  *  S  L  L  P  N  S  K  *  *  L  L  I  Y  F  G  K  D  A  L  P  *  I  *  F  F  C  T  F  A  I  F  K  V  *  N  Q  E  K  C  *  E  T </second_frame>
            <third_frame>   E  D  N  A  I  V  S  V  L  E  S  M  E  I  Q  S  Q  *  R  N  S  T  I  T  S  Y  R  Q  I  P  L  L  I  T  C  H  K  Q  L  R  F  L  S  S  N   : G  S  K  G  A  C  L  D  S  R  R  *  H  L  C  F  K  G  F  T  T  A  R  A  N  P  L  W  P  Y  L  G  K  S  V  I  Q   : S  M  A  S  R  V  F  W  F  I  M  T  T  K  T  M  Y  C  T  E  D  I  Q  L  K  *  E  M  *  F  F  T  S  P  Y  Y  L  I  L  N  N  D  C  *  F  I  L  V  R  M  L  Y  H  E  F  D  F  F  V  H  L  Q  Y  L  R  Y  E  I  K  K  N  V  E  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56368" stop="56231"/>
                    <exon start="53878" stop="53768"/>
                    <exon start="53306" stop="53274"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKIMRLFQYLSQWKSKANDGIQQSLLIAKFLCLLHVTSNYVFSPVMVPKGHVWIQGDNIYASKDSRQLGPIPCGLISGKVLYRVWPPECFGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56286" e_stop="56231"/>
            <exon e_start="56150" e_stop="55926"/>
            <exon e_start="53878" e_stop="53768"/>
            <exon e_start="53306" e_stop="53211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56286" e_stop="56231" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56230" i_stop="56151" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56150" e_stop="55926" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.990">
            <gDNA_intron_boundary i_start="55925" i_stop="53879" i_length="2047"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53878" e_stop="53768" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.977">
            <gDNA_intron_boundary i_start="53767" i_stop="53307" i_length="461"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53306" e_stop="53211" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56286" stop="56231"/>
              <exon start="56150" stop="55926"/>
              <exon start="53878" stop="53768"/>
              <exon start="53306" stop="53211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAATTCCTCTGCTTATTACATGTCACAAGCAACTACGTTTTCTCTCCAGTAATG : GTGTACGGTCCGAGCATGTTGCCGACCCTGAATCTTACCGGTGATGTTTTGCTGGTTGAACATTTGTCGCCGTTGTTCGATAAGTTGGGACCTGGAGATGTAATCCTTGTTCGGTCACCTGATAACCCTAGGAAGACTGTAACTAAACGAATTATTGGCATGGAGGGTGATACTGTCACTTTTCTAGCTGACCCTTCAAAAAGTGACCGGTATATTAGCTTAAAG : GTTCCAAAGGGGCATGTTTGGATTCAAGGAGATAACATCTATGCTTCAAAGGATTCACGACAGCTCGGGCCAATCCCTTGTGGCCTTATCTCGGGAAAAGTGTTATACAGA : GTATGGCCTCCAGAGTGTTTTGGTTCATTATGACCACAAAAACAATGTATTGTACTGAAGATATACAATTAAAATGAGAAATGTGATTCTTTACTA</gDNA_template>
            <first_frame> P  N  S  S  A  Y  Y  M  S  Q  A  T  T  F  S  L  Q  *  W :   C  T  V  R  A  C  C  R  P  *  I  L  P  V  M  F  C  W  L  N  I  C  R  R  C  S  I  S  W  D  L  E  M  *  S  L  F  G  H  L  I  T  L  G  R  L  *  L  N  E  L  L  A  W  R  V  I  L  S  L  F  *  L  T  L  Q  K  V  T  G  I  L  A  *  R :   F  Q  R  G  M  F  G  F  K  E  I  T  S  M  L  Q  R  I  H  D  S  S  G  Q  S  L  V  A  L  S  R  E  K  C  Y  T  E :   Y  G  L  Q  S  V  L  V  H  Y  D  H  K  N  N  V  L  Y  *  R  Y  T  I  K  M  R  N  V  I  L  Y   </first_frame>
            <second_frame>  Q  I  P  L  L  I  T  C  H  K  Q  L  R  F  L  S  S  N   : G  V  R  S  E  H  V  A  D  P  E  S  Y  R  *  C  F  A  G  *  T  F  V  A  V  V  R  *  V  G  T  W  R  C  N  P  C  S  V  T  *  *  P  *  E  D  C  N  *  T  N  Y  W  H  G  G  *  Y  C  H  F  S  S  *  P  F  K  K  *  P  V  Y  *  L  K   : G  S  K  G  A  C  L  D  S  R  R  *  H  L  C  F  K  G  F  T  T  A  R  A  N  P  L  W  P  Y  L  G  K  S  V  I  Q   : S  M  A  S  R  V  F  W  F  I  M  T  T  K  T  M  Y  C  T  E  D  I  Q  L  K  *  E  M  *  F  F  T  </second_frame>
            <third_frame>   K  F  L  C  L  L  H  V  T  S  N  Y  V  F  S  P  V  M  :  V  Y  G  P  S  M  L  P  T  L  N  L  T  G  D  V  L  L  V  E  H  L  S  P  L  F  D  K  L  G  P  G  D  V  I  L  V  R  S  P  D  N  P  R  K  T  V  T  K  R  I  I  G  M  E  G  D  T  V  T  F  L  A  D  P  S  K  S  D  R  Y  I  S  L  K  :  V  P  K  G  H  V  W  I  Q  G  D  N  I  Y  A  S  K  D  S  R  Q  L  G  P  I  P  C  G  L  I  S  G  K  V  L  Y  R  :  V  W  P  P  E  C  F  G  S  L  *  P  Q  K  Q  C  I  V  L  K  I  Y  N  *  N  E  K  C  D  S  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56284" stop="56231"/>
                    <exon start="56150" stop="55926"/>
                    <exon start="53878" stop="53768"/>
                    <exon start="53306" stop="53274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLCLLHVTSNYVFSPVMVYGPSMLPTLNLTGDVLLVEHLSPLFDKLGPGDVILVRSPDNPRKTVTKRIIGMEGDTVTFLADPSKSDRYISLKVPKGHVWIQGDNIYASKDSRQLGPIPCGLISGKVLYRVWPPECFGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="60834" PGL_stop="66440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60834" e_stop="61036"/>
            <exon e_start="61844" e_stop="61932"/>
            <exon e_start="62115" e_stop="62218"/>
            <exon e_start="62290" e_stop="62374"/>
            <exon e_start="62490" e_stop="62606"/>
            <exon e_start="64225" e_stop="64334"/>
            <exon e_start="64414" e_stop="64519"/>
            <exon e_start="64626" e_stop="64712"/>
            <exon e_start="65262" e_stop="65504"/>
            <exon e_start="65618" e_stop="65743"/>
            <exon e_start="65817" e_stop="65978"/>
            <exon e_start="66168" e_stop="66440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.801" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60834" e_stop="61036" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61037" i_stop="61843" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61844" e_stop="61932" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61933" i_stop="62114" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62115" e_stop="62218" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="62219" i_stop="62289" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62290" e_stop="62374" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.801" acc_prob="0.891">
            <gDNA_intron_boundary i_start="62375" i_stop="62489" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62490" e_stop="62606" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62607" i_stop="64224" i_length="1618"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64225" e_stop="64334" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="64335" i_stop="64413" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64414" e_stop="64519" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64520" i_stop="64625" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64626" e_stop="64712" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.924" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64713" i_stop="65261" i_length="549"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65262" e_stop="65504" e_length="243"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="65618" e_stop="65743" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.894" acc_prob="0.985">
            <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65817" e_stop="65978" e_length="162"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65979" i_stop="66167" i_length="189"/>
          </intron>
          <exon e_serial="12" e_score="0.978">
            <gDNA_exon_boundary e_start="66168" e_stop="66440" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60834" stop="61036"/>
              <exon start="61844" stop="61932"/>
              <exon start="62115" stop="62218"/>
              <exon start="62290" stop="62374"/>
              <exon start="62490" stop="62576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61867" stop="61932"/>
              <exon start="62115" stop="62218"/>
              <exon start="62290" stop="62374"/>
              <exon start="62490" stop="62606"/>
              <exon start="64225" stop="64334"/>
              <exon start="64414" stop="64476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64246" stop="64334"/>
              <exon start="64414" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64467" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64468" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64694" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65297" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65379" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251037" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65925" stop="65978"/>
              <exon start="66168" stop="66419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCTCATTCCAATTTTGGAGTGCCGTGGCGTTGTTCGCTTGCTTTTATAAGCCTTTGCAGCAAGCAGCCATGGCGGCGCCTCCTCCTTCTATTACATTCTCATTTCCAGTTCCCCATGCAATCATGATGAAATCTATGTCAATCTTATCCTTCATTCTTCTTCTTTCACCTTTGTTCGCCATGGCTAACACATCATTTG : GTGCTGAAAATACAGAAGGCATAAAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAG : GTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAAC : GTGGGTGGACCAAATGGGCAATGTCCATGGTCGGGCTGAAGGAATTAATCCAAGTGAAAAGGCTTTGTTAATTGGCTCTCATTTG : GATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGAAGGTTGGGTAAACTCCGGCGGCCAGTTGAG : GTAATCGCATTTAGTGATGAGGAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAA : TGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAG : GTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAG : GTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG : GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG : CATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG : GTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTACTTAATTTGAAC</gDNA_template>
            <first_frame> S  S  L  I  P  I  L  E  C  R  G  V  V  R  L  L  L  *  A  F  A  A  S  S  H  G  G  A  S  S  F  Y  Y  I  L  I  S  S  S  P  C  N  H  D  E  I  Y  V  N  L  I  L  H  S  S  S  F  T  F  V  R  H  G  *  H  I  I  W :   C  *  K  Y  R  R  H  K  V  *  S  F  P  *  N  P  Q  G  G  S  C  R  K  T  *  *  A  W  K   : G  K  *  C  K  W  L  P  R  E  D  L  P  E  P  C  I  G  Q  S  R  K  S  S  S  C  M  D  G  R  C  R  L  E  N  :  V  G  G  P  N  G  Q  C  P  W  S  G  *  R  N  *  S  K  *  K  G  F  V  N  W  L  S  F   : G  Y  S  Y  *  C  W  I  L  *  W  F  I  G  H  N  L  C  N  I  C  I  E  G  T  E  F  L  W  K  V  G  *  T  P  A  A  S  *   : G  N  R  I  *  *  *  G  G  S  K  V  S  V  N  L  L  G  *  C  S  Y  C  W  H  I  T  S  F  S  V  A  S  T  *  *  E  :  W  C  D  S  A  R  C  S  E  S  K  F  Y  R  D  Y  R  R  K  P  F  A  A  Q  I  *  T  R  I  C  L  G  L  C  *   : G  S  H  *  T  G  T  C  T  G  E  C  R  S  P  S  W  F  S  K  R  H  C  R  A  D  K  I  E   : G  D  S  E  R  H  T  R  T  C  R  D  S  T  H  E  Y  A  T  G  S  Y  G  C  S  C  *  T  N  C  I  S  G  K  S  L  *  T  T  *  L  L  S  V  I  *  W  S  M  H  I  F  N  S  G  I  S  C  R  I  S  G  L  Y  C  W  R  D  I  N  L  A  K  C  K  *  C  H  S  R  P   : G  H  I  H  R  R  C  T  C  D  G  *  L  R  T  R  S  Y  N  L  *  I  L  *  *  T  L  P  Y  V  *  *  A  F  C  L  L  *  R  *  E  K   : A  *  C  K  C  C  G  L  R  S  *  P  E  *  T  A  K  I  C  I  L  Y  C  F  E  K  N  N  *  *  G  S  R  *  C  S  C  T  D  E  W  S  R  T  *  C  N  G  H  V  S  S  N  Q   : G  G  N  A  I  C  A  L  S  R  R  H  Q  P  F  S  S  R  T  C  I  G  *  *  C  L  G  S  W  N  G  C  P  C  I  F  G  D  T  L  V  I  V  G  I  L  Q  C  K  L  V  G  *  F  A  I  H  N  P  I  F  V  Y  I  C  I  H  S  I  S  I  V  V  V  M  R  M  Y  I  C  N  K  T  S  *  P  V  T  *  F  E  </first_frame>
            <second_frame>  L  L  S  F  Q  F  W  S  A  V  A  L  F  A  C  F  Y  K  P  L  Q  Q  A  A  M  A  A  P  P  P  S  I  T  F  S  F  P  V  P  H  A  I  M  M  K  S  M  S  I  L  S  F  I  L  L  L  S  P  L  F  A  M  A  N  T  S  F   : G  A  E  N  T  E  G  I  K  Y  D  L  F  P  E  I  L  K  E  E  A  V  G  R  L  N  E  L  G  K  :  V  S  D  A  N  G  Y  L  E  R  T  F  Q  S  P  A  S  V  R  A  G  N  L  L  R  A  W  M  E  D  A  G  L  K  T :   W  V  D  Q  M  G  N  V  H  G  R  A  E  G  I  N  P  S  E  K  A  L  L  I  G  S  H  L  :  D  T  V  I  D  A  G  F  F  D  G  S  L  G  I  I  C  A  I  S  A  L  K  A  L  N  S  S  G  R  L  G  K  L  R  R  P  V  E  :  V  I  A  F  S  D  E  E  G  V  R  F  Q  S  T  F  L  G  S  A  A  I  A  G  I  L  P  V  S  A  L  Q  V  H  D  K  N :   G  V  T  V  Q  G  A  L  R  A  S  S  I  E  T  T  E  E  N  L  L  Q  L  K  Y  E  P  E  S  V  W  G  Y  V  E  :  V  H  I  E  Q  G  P  V  L  E  N  V  G  L  P  L  G  S  V  K  G  I  A  G  Q  T  R  L  K  :  V  T  V  K  G  T  Q  G  H  A  G  T  V  P  M  N  M  R  Q  D  P  M  V  A  A  A  E  L  I  V  F  L  E  S  L  C  K  Q  P  D  Y  Y  L  S  Y  D  G  Q  C  T  S  S  T  V  E  S  L  A  G  S  L  V  C  T  V  G  E  I  S  T  W  P  S  A  S  N  V  I  P  G  Q  :  V  T  F  T  V  D  V  R  A  M  D  D  L  G  R  E  A  I  I  Y  E  F  S  N  R  L  Y  H  M  C  D  R  R  S  V  F  C  N  V  E  R  K  :  H  D  A  N  A  V  V  C  D  P  S  L  S  R  Q  L  K  S  A  S  Y  T  A  L  K  R  I  T  D  E  D  P  G  D  V  P  V  L  M  S  G  A  G  H  D  A  M  A  M  S  H  L  T  K  :  V  G  M  L  F  V  R  C  R  G  G  I  S  H  S  P  A  E  H  V  L  D  D  D  V  W  A  A  G  M  A  V  L  A  F  L  E  T  L  L  *  L  L  A  F  C  N  A  N  *  *  A  S  L  L  F  I  I  P  F  L  Y  I  Y  V  S  I  Q  F  L  *  L  *  *  *  E  C  I  F  A  I  K  Q  V  D  L  L  L  N  L  N </second_frame>
            <third_frame>   F  S  H  S  N  F  G  V  P  W  R  C  S  L  A  F  I  S  L  C  S  K  Q  P  W  R  R  L  L  L  L  L  H  S  H  F  Q  F  P  M  Q  S  *  *  N  L  C  Q  S  Y  P  S  F  F  F  F  H  L  C  S  P  W  L  T  H  H  L  :  V  L  K  I  Q  K  A  *  S  M  I  F  S  L  K  S  S  R  R  K  L  *  E  D  L  M  S  L  E  R :   *  V  M  Q  M  A  T  *  R  G  P  S  R  A  L  H  R  S  E  Q  E  I  F  F  V  H  G  W  K  M  Q  A  *  K   : R  G  W  T  K  W  A  M  S  M  V  G  L  K  E  L  I  Q  V  K  R  L  C  *  L  A  L  I  W :   I  Q  L  L  M  L  D  S  L  M  V  H  W  A  *  F  V  Q  Y  L  H  *  R  H  *  I  P  L  E  G  W  V  N  S  G  G  Q  L  R :   *  S  H  L  V  M  R  R  E  *  G  F  S  Q  P  S  W  V  V  Q  L  L  L  A  Y  Y  Q  F  Q  R  C  K  Y  M  I  R   : M  V  *  Q  C  K  V  L  *  E  Q  V  L  *  R  L  Q  K  K  T  F  C  S  S  N  M  N  Q  N  L  F  G  A  M  L  R :   F  T  L  N  R  D  L  Y  W  R  M  S  V  S  L  L  V  Q  *  K  A  L  Q  G  R  Q  D  *  R :   *  Q  *  K  A  H  K  D  M  Q  G  Q  Y  P  *  I  C  D  R  I  L  W  L  Q  L  L  N  *  L  Y  F  W  K  V  F  V  N  N  L  T  I  I  C  H  M  M  V  N  A  H  L  Q  Q  W  N  L  L  Q  D  L  W  S  V  L  L  E  R  Y  Q  L  G  Q  V  Q  V  M  S  F  Q  A  R :   S  H  S  P  *  M  Y  V  R  W  M  T  *  D  E  K  L  *  F  M  N  S  L  I  D  S  T  I  C  V  I  G  V  L  S  S  V  T  L  R  E  S :   M  M  Q  M  L  W  F  A  I  L  A  *  V  D  S  *  N  L  H  L  I  L  L  *  K  E  *  L  M  R  I  Q  V  M  F  L  Y  *  *  V  E  Q  D  M  M  Q  W  P  C  L  I  *  P  R :   W  E  C  Y  L  C  V  V  A  E  A  S  A  I  L  Q  Q  N  M  Y  W  M  M  M  F  G  Q  L  E  W  L  S  L  H  F  W  R  H  S  C  N  C  W  H  F  A  M  Q  T  S  R  L  V  C  Y  S  *  S  H  F  C  I  Y  M  Y  P  F  N  F  Y  S  C  S  N  E  N  V  Y  L  Q  *  N  K  L  T  C  Y  L  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60835" stop="61036"/>
                    <exon start="61844" stop="61932"/>
                    <exon start="62115" stop="62218"/>
                    <exon start="62290" stop="62374"/>
                    <exon start="62490" stop="62606"/>
                    <exon start="64225" stop="64334"/>
                    <exon start="64414" stop="64519"/>
                    <exon start="64626" stop="64712"/>
                    <exon start="65262" stop="65504"/>
                    <exon start="65618" stop="65743"/>
                    <exon start="65817" stop="65978"/>
                    <exon start="66168" stop="66290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSFQFWSAVALFACFYKPLQQAAMAAPPPSITFSFPVPHAIMMKSMSILSFILLLSPLFAMANTSFGAENTEGIKYDLFPEILKEEAVGRLNELGKVSDANGYLERTFQSPASVRAGNLLRAWMEDAGLKTWVDQMGNVHGRAEGINPSEKALLIGSHLDTVIDAGFFDGSLGIICAISALKALNSSGRLGKLRRPVEVIAFSDEEGVRFQSTFLGSAAIAGILPVSALQVHDKNGVTVQGALRASSIETTEENLLQLKYEPESVWGYVEVHIEQGPVLENVGLPLGSVKGIAGQTRLKVTVKGTQGHAGTVPMNMRQDPMVAAAELIVFLESLCKQPDYYLSYDGQCTSSTVESLAGSLVCTVGEISTWPSASNVIPGQVTFTVDVRAMDDLGREAIIYEFSNRLYHMCDRRSVFCNVERKHDANAVVCDPSLSRQLKSASYTALKRITDEDPGDVPVLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGMAVLAFLETLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60836" e_stop="61036"/>
            <exon e_start="61844" e_stop="61932"/>
            <exon e_start="62115" e_stop="62218"/>
            <exon e_start="62490" e_stop="62606"/>
            <exon e_start="64225" e_stop="64334"/>
            <exon e_start="64414" e_stop="64519"/>
            <exon e_start="64626" e_stop="64712"/>
            <exon e_start="65262" e_stop="65504"/>
            <exon e_start="65618" e_stop="65743"/>
            <exon e_start="65817" e_stop="65978"/>
            <exon e_start="66168" e_stop="66440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="0.991"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="60836" e_stop="61036" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61037" i_stop="61843" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61844" e_stop="61932" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61933" i_stop="62114" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62115" e_stop="62218" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.891">
            <gDNA_intron_boundary i_start="62219" i_stop="62489" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62490" e_stop="62606" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62607" i_stop="64224" i_length="1618"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="64225" e_stop="64334" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="64335" i_stop="64413" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64414" e_stop="64519" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64520" i_stop="64625" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64626" e_stop="64712" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.924" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64713" i_stop="65261" i_length="549"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65262" e_stop="65504" e_length="243"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65618" e_stop="65743" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.894" acc_prob="0.985">
            <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="65817" e_stop="65978" e_length="162"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65979" i_stop="66167" i_length="189"/>
          </intron>
          <exon e_serial="11" e_score="0.978">
            <gDNA_exon_boundary e_start="66168" e_stop="66440" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60836" stop="61036"/>
              <exon start="61844" stop="61932"/>
              <exon start="62115" stop="62218"/>
              <exon start="62490" stop="62606"/>
              <exon start="64225" stop="64334"/>
              <exon start="64414" stop="64493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64246" stop="64334"/>
              <exon start="64414" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64467" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64468" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64694" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65297" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65379" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251037" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66168" stop="66414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65925" stop="65978"/>
              <exon start="66168" stop="66419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCATTCCAATTTTGGAGTGCCGTGGCGTTGTTCGCTTGCTTTTATAAGCCTTTGCAGCAAGCAGCCATGGCGGCGCCTCCTCCTTCTATTACATTCTCATTTCCAGTTCCCCATGCAATCATGATGAAATCTATGTCAATCTTATCCTTCATTCTTCTTCTTTCACCTTTGTTCGCCATGGCTAACACATCATTTG : GTGCTGAAAATACAGAAGGCATAAAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAG : GTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAAC : GATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGAAGGTTGGGTAAACTCCGGCGGCCAGTTGAG : GTAATCGCATTTAGTGATGAGGAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAA : TGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAG : GTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAG : GTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG : GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG : CATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG : GTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTACTTAATTTGAAC</gDNA_template>
            <first_frame> F  S  H  S  N  F  G  V  P  W  R  C  S  L  A  F  I  S  L  C  S  K  Q  P  W  R  R  L  L  L  L  L  H  S  H  F  Q  F  P  M  Q  S  *  *  N  L  C  Q  S  Y  P  S  F  F  F  F  H  L  C  S  P  W  L  T  H  H  L  :  V  L  K  I  Q  K  A  *  S  M  I  F  S  L  K  S  S  R  R  K  L  *  E  D  L  M  S  L  E  R :   *  V  M  Q  M  A  T  *  R  G  P  S  R  A  L  H  R  S  E  Q  E  I  F  F  V  H  G  W  K  M  Q  A  *  K   : R  Y  S  Y  *  C  W  I  L  *  W  F  I  G  H  N  L  C  N  I  C  I  E  G  T  E  F  L  W  K  V  G  *  T  P  A  A  S  *   : G  N  R  I  *  *  *  G  G  S  K  V  S  V  N  L  L  G  *  C  S  Y  C  W  H  I  T  S  F  S  V  A  S  T  *  *  E  :  W  C  D  S  A  R  C  S  E  S  K  F  Y  R  D  Y  R  R  K  P  F  A  A  Q  I  *  T  R  I  C  L  G  L  C  *   : G  S  H  *  T  G  T  C  T  G  E  C  R  S  P  S  W  F  S  K  R  H  C  R  A  D  K  I  E   : G  D  S  E  R  H  T  R  T  C  R  D  S  T  H  E  Y  A  T  G  S  Y  G  C  S  C  *  T  N  C  I  S  G  K  S  L  *  T  T  *  L  L  S  V  I  *  W  S  M  H  I  F  N  S  G  I  S  C  R  I  S  G  L  Y  C  W  R  D  I  N  L  A  K  C  K  *  C  H  S  R  P   : G  H  I  H  R  R  C  T  C  D  G  *  L  R  T  R  S  Y  N  L  *  I  L  *  *  T  L  P  Y  V  *  *  A  F  C  L  L  *  R  *  E  K   : A  *  C  K  C  C  G  L  R  S  *  P  E  *  T  A  K  I  C  I  L  Y  C  F  E  K  N  N  *  *  G  S  R  *  C  S  C  T  D  E  W  S  R  T  *  C  N  G  H  V  S  S  N  Q   : G  G  N  A  I  C  A  L  S  R  R  H  Q  P  F  S  S  R  T  C  I  G  *  *  C  L  G  S  W  N  G  C  P  C  I  F  G  D  T  L  V  I  V  G  I  L  Q  C  K  L  V  G  *  F  A  I  H  N  P  I  F  V  Y  I  C  I  H  S  I  S  I  V  V  V  M  R  M  Y  I  C  N  K  T  S  *  P  V  T  *  F  E  </first_frame>
            <second_frame>  S  L  I  P  I  L  E  C  R  G  V  V  R  L  L  L  *  A  F  A  A  S  S  H  G  G  A  S  S  F  Y  Y  I  L  I  S  S  S  P  C  N  H  D  E  I  Y  V  N  L  I  L  H  S  S  S  F  T  F  V  R  H  G  *  H  I  I  W :   C  *  K  Y  R  R  H  K  V  *  S  F  P  *  N  P  Q  G  G  S  C  R  K  T  *  *  A  W  K   : G  K  *  C  K  W  L  P  R  E  D  L  P  E  P  C  I  G  Q  S  R  K  S  S  S  C  M  D  G  R  C  R  L  E  N  :  D  T  V  I  D  A  G  F  F  D  G  S  L  G  I  I  C  A  I  S  A  L  K  A  L  N  S  S  G  R  L  G  K  L  R  R  P  V  E  :  V  I  A  F  S  D  E  E  G  V  R  F  Q  S  T  F  L  G  S  A  A  I  A  G  I  L  P  V  S  A  L  Q  V  H  D  K  N :   G  V  T  V  Q  G  A  L  R  A  S  S  I  E  T  T  E  E  N  L  L  Q  L  K  Y  E  P  E  S  V  W  G  Y  V  E  :  V  H  I  E  Q  G  P  V  L  E  N  V  G  L  P  L  G  S  V  K  G  I  A  G  Q  T  R  L  K  :  V  T  V  K  G  T  Q  G  H  A  G  T  V  P  M  N  M  R  Q  D  P  M  V  A  A  A  E  L  I  V  F  L  E  S  L  C  K  Q  P  D  Y  Y  L  S  Y  D  G  Q  C  T  S  S  T  V  E  S  L  A  G  S  L  V  C  T  V  G  E  I  S  T  W  P  S  A  S  N  V  I  P  G  Q  :  V  T  F  T  V  D  V  R  A  M  D  D  L  G  R  E  A  I  I  Y  E  F  S  N  R  L  Y  H  M  C  D  R  R  S  V  F  C  N  V  E  R  K  :  H  D  A  N  A  V  V  C  D  P  S  L  S  R  Q  L  K  S  A  S  Y  T  A  L  K  R  I  T  D  E  D  P  G  D  V  P  V  L  M  S  G  A  G  H  D  A  M  A  M  S  H  L  T  K  :  V  G  M  L  F  V  R  C  R  G  G  I  S  H  S  P  A  E  H  V  L  D  D  D  V  W  A  A  G  M  A  V  L  A  F  L  E  T  L  L  *  L  L  A  F  C  N  A  N  *  *  A  S  L  L  F  I  I  P  F  L  Y  I  Y  V  S  I  Q  F  L  *  L  *  *  *  E  C  I  F  A  I  K  Q  V  D  L  L  L  N  L  N </second_frame>
            <third_frame>   L  S  F  Q  F  W  S  A  V  A  L  F  A  C  F  Y  K  P  L  Q  Q  A  A  M  A  A  P  P  P  S  I  T  F  S  F  P  V  P  H  A  I  M  M  K  S  M  S  I  L  S  F  I  L  L  L  S  P  L  F  A  M  A  N  T  S  F   : G  A  E  N  T  E  G  I  K  Y  D  L  F  P  E  I  L  K  E  E  A  V  G  R  L  N  E  L  G  K  :  V  S  D  A  N  G  Y  L  E  R  T  F  Q  S  P  A  S  V  R  A  G  N  L  L  R  A  W  M  E  D  A  G  L  K  T :   I  Q  L  L  M  L  D  S  L  M  V  H  W  A  *  F  V  Q  Y  L  H  *  R  H  *  I  P  L  E  G  W  V  N  S  G  G  Q  L  R :   *  S  H  L  V  M  R  R  E  *  G  F  S  Q  P  S  W  V  V  Q  L  L  L  A  Y  Y  Q  F  Q  R  C  K  Y  M  I  R   : M  V  *  Q  C  K  V  L  *  E  Q  V  L  *  R  L  Q  K  K  T  F  C  S  S  N  M  N  Q  N  L  F  G  A  M  L  R :   F  T  L  N  R  D  L  Y  W  R  M  S  V  S  L  L  V  Q  *  K  A  L  Q  G  R  Q  D  *  R :   *  Q  *  K  A  H  K  D  M  Q  G  Q  Y  P  *  I  C  D  R  I  L  W  L  Q  L  L  N  *  L  Y  F  W  K  V  F  V  N  N  L  T  I  I  C  H  M  M  V  N  A  H  L  Q  Q  W  N  L  L  Q  D  L  W  S  V  L  L  E  R  Y  Q  L  G  Q  V  Q  V  M  S  F  Q  A  R :   S  H  S  P  *  M  Y  V  R  W  M  T  *  D  E  K  L  *  F  M  N  S  L  I  D  S  T  I  C  V  I  G  V  L  S  S  V  T  L  R  E  S :   M  M  Q  M  L  W  F  A  I  L  A  *  V  D  S  *  N  L  H  L  I  L  L  *  K  E  *  L  M  R  I  Q  V  M  F  L  Y  *  *  V  E  Q  D  M  M  Q  W  P  C  L  I  *  P  R :   W  E  C  Y  L  C  V  V  A  E  A  S  A  I  L  Q  Q  N  M  Y  W  M  M  M  F  G  Q  L  E  W  L  S  L  H  F  W  R  H  S  C  N  C  W  H  F  A  M  Q  T  S  R  L  V  C  Y  S  *  S  H  F  C  I  Y  M  Y  P  F  N  F  Y  S  C  S  N  E  N  V  Y  L  Q  *  N  K  L  T  C  Y  L  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62123" stop="62218"/>
                    <exon start="62490" stop="62606"/>
                    <exon start="64225" stop="64334"/>
                    <exon start="64414" stop="64519"/>
                    <exon start="64626" stop="64712"/>
                    <exon start="65262" stop="65504"/>
                    <exon start="65618" stop="65743"/>
                    <exon start="65817" stop="65978"/>
                    <exon start="66168" stop="66290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKWLPREDLPEPCIGQSRKSSSCMDGRCRLENDTVIDAGFFDGSLGIICAISALKALNSSGRLGKLRRPVEVIAFSDEEGVRFQSTFLGSAAIAGILPVSALQVHDKNGVTVQGALRASSIETTEENLLQLKYEPESVWGYVEVHIEQGPVLENVGLPLGSVKGIAGQTRLKVTVKGTQGHAGTVPMNMRQDPMVAAAELIVFLESLCKQPDYYLSYDGQCTSSTVESLAGSLVCTVGEISTWPSASNVIPGQVTFTVDVRAMDDLGREAIIYEFSNRLYHMCDRRSVFCNVERKHDANAVVCDPSLSRQLKSASYTALKRITDEDPGDVPVLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGMAVLAFLETLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60834" e_stop="61036"/>
            <exon e_start="61844" e_stop="61932"/>
            <exon e_start="62115" e_stop="62218"/>
            <exon e_start="62290" e_stop="62374"/>
            <exon e_start="62490" e_stop="62606"/>
            <exon e_start="64225" e_stop="64334"/>
            <exon e_start="64414" e_stop="64519"/>
            <exon e_start="64626" e_stop="64712"/>
            <exon e_start="65262" e_stop="65504"/>
            <exon e_start="65618" e_stop="65743"/>
            <exon e_start="65817" e_stop="65978"/>
            <exon e_start="66149" e_stop="66430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.801" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.673" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60834" e_stop="61036" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61037" i_stop="61843" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61844" e_stop="61932" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61933" i_stop="62114" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62115" e_stop="62218" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="62219" i_stop="62289" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62290" e_stop="62374" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.801" acc_prob="0.891">
            <gDNA_intron_boundary i_start="62375" i_stop="62489" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62490" e_stop="62606" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62607" i_stop="64224" i_length="1618"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64225" e_stop="64334" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="64335" i_stop="64413" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64414" e_stop="64519" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64520" i_stop="64625" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64626" e_stop="64712" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.924" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64713" i_stop="65261" i_length="549"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65262" e_stop="65504" e_length="243"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65505" i_stop="65617" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="65618" e_stop="65743" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.894" acc_prob="0.985">
            <gDNA_intron_boundary i_start="65744" i_stop="65816" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65817" e_stop="65978" e_length="162"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.673">
            <gDNA_intron_boundary i_start="65979" i_stop="66148" i_length="170"/>
          </intron>
          <exon e_serial="12" e_score="0.965">
            <gDNA_exon_boundary e_start="66149" e_stop="66430" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60834" stop="61036"/>
              <exon start="61844" stop="61932"/>
              <exon start="62115" stop="62218"/>
              <exon start="62290" stop="62374"/>
              <exon start="62490" stop="62576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61867" stop="61932"/>
              <exon start="62115" stop="62218"/>
              <exon start="62290" stop="62374"/>
              <exon start="62490" stop="62606"/>
              <exon start="64225" stop="64334"/>
              <exon start="64414" stop="64476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64246" stop="64334"/>
              <exon start="64414" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64467" stop="64519"/>
              <exon start="64626" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64694" stop="64712"/>
              <exon start="65262" stop="65504"/>
              <exon start="65618" stop="65743"/>
              <exon start="65817" stop="65972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65653" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66149" stop="66430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65653" stop="65743"/>
              <exon start="65817" stop="65978"/>
              <exon start="66149" stop="66424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420934" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCTCATTCCAATTTTGGAGTGCCGTGGCGTTGTTCGCTTGCTTTTATAAGCCTTTGCAGCAAGCAGCCATGGCGGCGCCTCCTCCTTCTATTACATTCTCATTTCCAGTTCCCCATGCAATCATGATGAAATCTATGTCAATCTTATCCTTCATTCTTCTTCTTTCACCTTTGTTCGCCATGGCTAACACATCATTTG : GTGCTGAAAATACAGAAGGCATAAAGTATGATCTTTTCCCTGAAATCCTCAAGGAGGAAGCTGTAGGAAGACTTAATGAGCTTGGAAAG : GTAAGTGATGCAAATGGCTACCTAGAGAGGACCTTCCAGAGCCCTGCATCGGTCAGAGCAGGAAATCTTCTTCGTGCATGGATGGAAGATGCAGGCTTGAAAAC : GTGGGTGGACCAAATGGGCAATGTCCATGGTCGGGCTGAAGGAATTAATCCAAGTGAAAAGGCTTTGTTAATTGGCTCTCATTTG : GATACAGTTATTGATGCTGGATTCTTTGATGGTTCATTGGGCATAATTTGTGCAATATCTGCATTGAAGGCACTGAATTCCTCTGGAAGGTTGGGTAAACTCCGGCGGCCAGTTGAG : GTAATCGCATTTAGTGATGAGGAGGGAGTAAGGTTTCAGTCAACCTTCTTGGGTAGTGCAGCTATTGCTGGCATATTACCAGTTTCAGCGTTGCAAGTACATGATAAGAA : TGGTGTGACAGTGCAAGGTGCTCTGAGAGCAAGTTCTATAGAGACTACAGAAGAAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAG : GTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGTCTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAG : GTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAATATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTCAATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCAGGCCAG : GTCACATTCACCGTAGATGTACGTGCGATGGATGACTTAGGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTGTGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAG : CATGATGCAAATGCTGTGGTTTGCGATCCTAGCCTGAGTAGACAGCTAAAATCTGCATCTTATACTGCTTTGAAAAGAATAACTGATGAGGATCCAGGTGATGTTCCTGTACTGATGAGTGGAGCAGGACATGATGCAATGGCCATGTCTCATCTAACCAAG : ATTGACTACTTTTCGATAGGTGGGAATGCTATTTGTGCGTTGTCGCGGAGGCATCAGCCATTCTCCAGCAGAACATGTATTGGATGATGATGTTTGGGCAGCTGGAATGGCTGTCCTTGCATTTTTGGAGACACTCTTGTAATTGTTGGCATTTTGCAATGCAAACTAGTAGGCTAGTTTGCTATTCATAATCCCATTTTTGTATATATATGTATCCATTCAATTTCTATAGTTGTAGTAATGAGAATGTATATTTGCAATAAAACAAGTTGACCTGTTACT</gDNA_template>
            <first_frame> S  S  L  I  P  I  L  E  C  R  G  V  V  R  L  L  L  *  A  F  A  A  S  S  H  G  G  A  S  S  F  Y  Y  I  L  I  S  S  S  P  C  N  H  D  E  I  Y  V  N  L  I  L  H  S  S  S  F  T  F  V  R  H  G  *  H  I  I  W :   C  *  K  Y  R  R  H  K  V  *  S  F  P  *  N  P  Q  G  G  S  C  R  K  T  *  *  A  W  K   : G  K  *  C  K  W  L  P  R  E  D  L  P  E  P  C  I  G  Q  S  R  K  S  S  S  C  M  D  G  R  C  R  L  E  N  :  V  G  G  P  N  G  Q  C  P  W  S  G  *  R  N  *  S  K  *  K  G  F  V  N  W  L  S  F   : G  Y  S  Y  *  C  W  I  L  *  W  F  I  G  H  N  L  C  N  I  C  I  E  G  T  E  F  L  W  K  V  G  *  T  P  A  A  S  *   : G  N  R  I  *  *  *  G  G  S  K  V  S  V  N  L  L  G  *  C  S  Y  C  W  H  I  T  S  F  S  V  A  S  T  *  *  E  :  W  C  D  S  A  R  C  S  E  S  K  F  Y  R  D  Y  R  R  K  P  F  A  A  Q  I  *  T  R  I  C  L  G  L  C  *   : G  S  H  *  T  G  T  C  T  G  E  C  R  S  P  S  W  F  S  K  R  H  C  R  A  D  K  I  E   : G  D  S  E  R  H  T  R  T  C  R  D  S  T  H  E  Y  A  T  G  S  Y  G  C  S  C  *  T  N  C  I  S  G  K  S  L  *  T  T  *  L  L  S  V  I  *  W  S  M  H  I  F  N  S  G  I  S  C  R  I  S  G  L  Y  C  W  R  D  I  N  L  A  K  C  K  *  C  H  S  R  P   : G  H  I  H  R  R  C  T  C  D  G  *  L  R  T  R  S  Y  N  L  *  I  L  *  *  T  L  P  Y  V  *  *  A  F  C  L  L  *  R  *  E  K   : A  *  C  K  C  C  G  L  R  S  *  P  E  *  T  A  K  I  C  I  L  Y  C  F  E  K  N  N  *  *  G  S  R  *  C  S  C  T  D  E  W  S  R  T  *  C  N  G  H  V  S  S  N  Q   : D  *  L  L  F  D  R  W  E  C  Y  L  C  V  V  A  E  A  S  A  I  L  Q  Q  N  M  Y  W  M  M  M  F  G  Q  L  E  W  L  S  L  H  F  W  R  H  S  C  N  C  W  H  F  A  M  Q  T  S  R  L  V  C  Y  S  *  S  H  F  C  I  Y  M  Y  P  F  N  F  Y  S  C  S  N  E  N  V  Y  L  Q  *  N  K  L  T  C  Y  </first_frame>
            <second_frame>  L  L  S  F  Q  F  W  S  A  V  A  L  F  A  C  F  Y  K  P  L  Q  Q  A  A  M  A  A  P  P  P  S  I  T  F  S  F  P  V  P  H  A  I  M  M  K  S  M  S  I  L  S  F  I  L  L  L  S  P  L  F  A  M  A  N  T  S  F   : G  A  E  N  T  E  G  I  K  Y  D  L  F  P  E  I  L  K  E  E  A  V  G  R  L  N  E  L  G  K  :  V  S  D  A  N  G  Y  L  E  R  T  F  Q  S  P  A  S  V  R  A  G  N  L  L  R  A  W  M  E  D  A  G  L  K  T :   W  V  D  Q  M  G  N  V  H  G  R  A  E  G  I  N  P  S  E  K  A  L  L  I  G  S  H  L  :  D  T  V  I  D  A  G  F  F  D  G  S  L  G  I  I  C  A  I  S  A  L  K  A  L  N  S  S  G  R  L  G  K  L  R  R  P  V  E  :  V  I  A  F  S  D  E  E  G  V  R  F  Q  S  T  F  L  G  S  A  A  I  A  G  I  L  P  V  S  A  L  Q  V  H  D  K  N :   G  V  T  V  Q  G  A  L  R  A  S  S  I  E  T  T  E  E  N  L  L  Q  L  K  Y  E  P  E  S  V  W  G  Y  V  E  :  V  H  I  E  Q  G  P  V  L  E  N  V  G  L  P  L  G  S  V  K  G  I  A  G  Q  T  R  L  K  :  V  T  V  K  G  T  Q  G  H  A  G  T  V  P  M  N  M  R  Q  D  P  M  V  A  A  A  E  L  I  V  F  L  E  S  L  C  K  Q  P  D  Y  Y  L  S  Y  D  G  Q  C  T  S  S  T  V  E  S  L  A  G  S  L  V  C  T  V  G  E  I  S  T  W  P  S  A  S  N  V  I  P  G  Q  :  V  T  F  T  V  D  V  R  A  M  D  D  L  G  R  E  A  I  I  Y  E  F  S  N  R  L  Y  H  M  C  D  R  R  S  V  F  C  N  V  E  R  K  :  H  D  A  N  A  V  V  C  D  P  S  L  S  R  Q  L  K  S  A  S  Y  T  A  L  K  R  I  T  D  E  D  P  G  D  V  P  V  L  M  S  G  A  G  H  D  A  M  A  M  S  H  L  T  K  :  I  D  Y  F  S  I  G  G  N  A  I  C  A  L  S  R  R  H  Q  P  F  S  S  R  T  C  I  G  *  *  C  L  G  S  W  N  G  C  P  C  I  F  G  D  T  L  V  I  V  G  I  L  Q  C  K  L  V  G  *  F  A  I  H  N  P  I  F  V  Y  I  C  I  H  S  I  S  I  V  V  V  M  R  M  Y  I  C  N  K  T  S  *  P  V  T </second_frame>
            <third_frame>   F  S  H  S  N  F  G  V  P  W  R  C  S  L  A  F  I  S  L  C  S  K  Q  P  W  R  R  L  L  L  L  L  H  S  H  F  Q  F  P  M  Q  S  *  *  N  L  C  Q  S  Y  P  S  F  F  F  F  H  L  C  S  P  W  L  T  H  H  L  :  V  L  K  I  Q  K  A  *  S  M  I  F  S  L  K  S  S  R  R  K  L  *  E  D  L  M  S  L  E  R :   *  V  M  Q  M  A  T  *  R  G  P  S  R  A  L  H  R  S  E  Q  E  I  F  F  V  H  G  W  K  M  Q  A  *  K   : R  G  W  T  K  W  A  M  S  M  V  G  L  K  E  L  I  Q  V  K  R  L  C  *  L  A  L  I  W :   I  Q  L  L  M  L  D  S  L  M  V  H  W  A  *  F  V  Q  Y  L  H  *  R  H  *  I  P  L  E  G  W  V  N  S  G  G  Q  L  R :   *  S  H  L  V  M  R  R  E  *  G  F  S  Q  P  S  W  V  V  Q  L  L  L  A  Y  Y  Q  F  Q  R  C  K  Y  M  I  R   : M  V  *  Q  C  K  V  L  *  E  Q  V  L  *  R  L  Q  K  K  T  F  C  S  S  N  M  N  Q  N  L  F  G  A  M  L  R :   F  T  L  N  R  D  L  Y  W  R  M  S  V  S  L  L  V  Q  *  K  A  L  Q  G  R  Q  D  *  R :   *  Q  *  K  A  H  K  D  M  Q  G  Q  Y  P  *  I  C  D  R  I  L  W  L  Q  L  L  N  *  L  Y  F  W  K  V  F  V  N  N  L  T  I  I  C  H  M  M  V  N  A  H  L  Q  Q  W  N  L  L  Q  D  L  W  S  V  L  L  E  R  Y  Q  L  G  Q  V  Q  V  M  S  F  Q  A  R :   S  H  S  P  *  M  Y  V  R  W  M  T  *  D  E  K  L  *  F  M  N  S  L  I  D  S  T  I  C  V  I  G  V  L  S  S  V  T  L  R  E  S :   M  M  Q  M  L  W  F  A  I  L  A  *  V  D  S  *  N  L  H  L  I  L  L  *  K  E  *  L  M  R  I  Q  V  M  F  L  Y  *  *  V  E  Q  D  M  M  Q  W  P  C  L  I  *  P  R :   L  T  T  F  R  *  V  G  M  L  F  V  R  C  R  G  G  I  S  H  S  P  A  E  H  V  L  D  D  D  V  W  A  A  G  M  A  V  L  A  F  L  E  T  L  L  *  L  L  A  F  C  N  A  N  *  *  A  S  L  L  F  I  I  P  F  L  Y  I  Y  V  S  I  Q  F  L  *  L  *  *  *  E  C  I  F  A  I  K  Q  V  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60835" stop="61036"/>
                    <exon start="61844" stop="61932"/>
                    <exon start="62115" stop="62218"/>
                    <exon start="62290" stop="62374"/>
                    <exon start="62490" stop="62606"/>
                    <exon start="64225" stop="64334"/>
                    <exon start="64414" stop="64519"/>
                    <exon start="64626" stop="64712"/>
                    <exon start="65262" stop="65504"/>
                    <exon start="65618" stop="65743"/>
                    <exon start="65817" stop="65978"/>
                    <exon start="66149" stop="66235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1515</number_coding_nucleotides>
                  <number_encoded_amino_acids>505</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSFQFWSAVALFACFYKPLQQAAMAAPPPSITFSFPVPHAIMMKSMSILSFILLLSPLFAMANTSFGAENTEGIKYDLFPEILKEEAVGRLNELGKVSDANGYLERTFQSPASVRAGNLLRAWMEDAGLKTWVDQMGNVHGRAEGINPSEKALLIGSHLDTVIDAGFFDGSLGIICAISALKALNSSGRLGKLRRPVEVIAFSDEEGVRFQSTFLGSAAIAGILPVSALQVHDKNGVTVQGALRASSIETTEENLLQLKYEPESVWGYVEVHIEQGPVLENVGLPLGSVKGIAGQTRLKVTVKGTQGHAGTVPMNMRQDPMVAAAELIVFLESLCKQPDYYLSYDGQCTSSTVESLAGSLVCTVGEISTWPSASNVIPGQVTFTVDVRAMDDLGREAIIYEFSNRLYHMCDRRSVFCNVERKHDANAVVCDPSLSRQLKSASYTALKRITDEDPGDVPVLMSGAGHDAMAMSHLTKIDYFSIGGNAICALSRRHQPFSSRTCIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="67858" PGL_stop="68706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67858" e_stop="67878"/>
            <exon e_start="68379" e_stop="68706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="67858" e_stop="67878" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67879" i_stop="68378" i_length="500"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68379" e_stop="68706" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67858" stop="67878"/>
              <exon start="68379" stop="68706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67858" stop="67878"/>
              <exon start="68379" stop="68705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301430" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTTTTTGTTTTTTTTG : ATGAAAACATACTGGCTTTGGTAATACAAATTAGTTGTTGTATAACATCTCAAACCATCATGGACTGGTTCAAGGCTCAAGGCCTTGCATGTCATTGGCAAGTTTTAAAAAATAAATGCCTAATACAGTTAGCCCTTGTAACTAGGATAAAAGATTGCAGGCTGGTTTCAGTCAAAAGAAATGCTGATCTATAACTCTTATCCACTTACTTTACAATAGGAGGCTGAGCTAATTGTTGTAGCTGATGGACGACGTGTGACATCCTCGGACGCATTGATGGTACATGTTGTGTACAAGAATAAACAAGATCAACAACTTTTTGGATGAC</gDNA_template>
            <first_frame> I  F  F  L  F  F  L  :  M  K  T  Y  W  L  W  *  Y  K  L  V  V  V  *  H  L  K  P  S  W  T  G  S  R  L  K  A  L  H  V  I  G  K  F  *  K  I  N  A  *  Y  S  *  P  L  *  L  G  *  K  I  A  G  W  F  Q  S  K  E  M  L  I  Y  N  S  Y  P  L  T  L  Q  *  E  A  E  L  I  V  V  A  D  G  R  R  V  T  S  S  D  A  L  M  V  H  V  V  Y  K  N  K  Q  D  Q  Q  L  F  G  *  </first_frame>
            <second_frame>  F  F  F  C  F  F  * :   *  K  H  T  G  F  G  N  T  N  *  L  L  Y  N  I  S  N  H  H  G  L  V  Q  G  S  R  P  C  M  S  L  A  S  F  K  K  *  M  P  N  T  V  S  P  C  N  *  D  K  R  L  Q  A  G  F  S  Q  K  K  C  *  S  I  T  L  I  H  L  L  Y  N  R  R  L  S  *  L  L  *  L  M  D  D  V  *  H  P  R  T  H  *  W  Y  M  L  C  T  R  I  N  K  I  N  N  F  L  D  D </second_frame>
            <third_frame>   F  F  F  V  F  F   : D  E  N  I  L  A  L  V  I  Q  I  S  C  C  I  T  S  Q  T  I  M  D  W  F  K  A  Q  G  L  A  C  H  W  Q  V  L  K  N  K  C  L  I  Q  L  A  L  V  T  R  I  K  D  C  R  L  V  S  V  K  R  N  A  D  L  *  L  L  S  T  Y  F  T  I  G  G  *  A  N  C  C  S  *  W  T  T  C  D  I  L  G  R  I  D  G  T  C  C  V  Q  E  *  T  R  S  T  T  F  W  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67860" stop="67878"/>
                    <exon start="68379" stop="68572"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVFFDENILALVIQISCCITSQTIMDWFKAQGLACHWQVLKNKCLIQLALVTRIKDCRLVSVKRNADL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73308" PGL_stop="68293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73308" e_stop="73007"/>
            <exon e_start="72874" e_stop="72820"/>
            <exon e_start="71830" e_stop="71411"/>
            <exon e_start="71162" e_stop="70604"/>
            <exon e_start="69112" e_stop="68293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.417" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.985" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="73308" e_stop="73007" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.417" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73006" i_stop="72875" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72874" e_stop="72820" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.938">
            <gDNA_intron_boundary i_start="72819" i_stop="71831" i_length="989"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71830" e_stop="71411" e_length="420"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="71410" i_stop="71163" i_length="248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="70604" e_length="559"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70603" i_stop="69113" i_length="1491"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="69112" e_stop="68293" e_length="820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73308" stop="73007"/>
              <exon start="72874" stop="72820"/>
              <exon start="71830" stop="71411"/>
              <exon start="71162" stop="70604"/>
              <exon start="69112" stop="68293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70758" stop="70604"/>
              <exon start="69112" stop="68504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69053" stop="68391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69053" stop="68391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69053" stop="68471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69015" stop="68650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68912" stop="68391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266175" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68711" stop="68391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTCATTAAAAATGGTGGGGACAAACATAAGGTGAGAAATTAACTACTCTGTCTGAACAAACACTTTCTTCTTCAAAGAAAATTCAACTAACCATTGGAGACTCCAAATGTGAACTCTTTACTCTTCTTTTTTTTTTTTTTCCATCTAAACGAAAAACCCTATCCACAATGCCCAACCCCACACTCAAAATTAGTCTAGGTTTTGCTATACAGTGAGAACAAGTGATGATGGCTGTTAAACTTCCGTTCCCTTTGTTTCTACTTTCTTGTTTTCTGCTTCACCTCTGTGCTTCTACTTCT : GTTTCTAATAAGACACAAGTAGTTTCCTCTGCTGGGAATCAAAGTCATGATGATG : GAAGATGTGATCCTGGTTGGTTTAACGGCCCAAAAGGGAAAAAGTGCTTCAAATATTATGCTACGTCTTTGCAATGGAATGAATCAGAGACTTACTGCAATGGTTTTGGAGGAAACCTGGCTGCCATAACATCTTCAGAAGAACTGAACTTTGTCCAGAAGCTCTGTGGCAATGATAGTAACGGATGCTGGGTTGGTGGAAGGAGCATCAATATCACAGCTGGGTTGGGTTGGAAATGGTCTGATAATGCTTCTAGCTGGAATGAGAGTATTGCTCCTAAGACAACTTTGGACTCAAGTTGCAAAAATTTCTCATGCTATGGCTTTAAGTCGGTGGATTTGTGTACATCGATAATCAGTGGTGCTATTATAGCTGAGAGATGCAATGTAACTCATGCTTCTATATGCACACTTGATGCTG : GGAGCAAGTGTCGCCATATGCGGTGCCACAGGGAGTATCTCATTATTCTTGCAGTTGTTAGTGGGTTGATCCTTTGCACTACTTTGGCTATTGTGATATGGCTTCTTGTATTTAGGCGAAGTAAAAGACGCAAAAGATCATTGCGTGCTTCATTAGCATTAGTTCCCCCGTCTTGGAAAATTTTCAGTCGTGATGAAGTAAAGTCCATGACAAAGAATTTCAGTGAAGCAAATCGTCTCCTTGGGGACGCCAAAACAGGTGGTACCTATAGTGGGCTTTTACCTGATGGTTCAAGGGTGGCTGTGAAAAGATTGAAGAGGTGCGGTATTCAGAGGAAGAAAGAGTTCTACTCTGAGATTGGAAGGGTTGCAAGACTTCATCATTCAAATCTGGTATCTATCAAAGGATGTTGCTATCATCATGGTGACCGCTATATTCTGTACGAGTTCATCATCAATGGACCCCTGGATAGGTGGCTACACCATATTCCTAGAGGAGGTAGGAGTTTGGACTGGAGCATGAGAATGAAGGTCGCCACCACCCTTGCTCAAGGGATTGC : GTTTCTTCATGACAAAATGAAGCCACAAGTTGTGCATAGGGATATCCGTGCAAGCAATGTCCTTCTTGACGAAGAATTTGGCGCCCATCTAATGGGAGTTGGTCTGTCTAAGTTTGTGCCATGGGAAATCATGCACGAGAGGAGAGTCATGGCAGGTGGTACTCATGGGTATCTTGCTCCGGAGTTTGTTTACAGAAATGAGCTTACTACAAAGAGTGACGTCTACAGCTTTGGAGTCCTCTTGCTTGAAATAATTAGTGGACGAAGACCAGCACAGGCAGTAGATTCTGTTGGATGGCAAAGTATATTTGAATGGGCCACGCCTCTGGTGCAAGCTCATCGATATGTTGAACTCTTGGATCCTCTCATATCATCTTCTTCCTCTTCTCAGATTCCTGAAGTTGGAGTCATCCAAAAAGTTGTTGATCTTGTTTATTCTTGTACACAACATGTACCATCAATGCGTCCGAGGATGTCACACGTCGTCCATCAGCTACAACAATTAGCTCAGCCTCCTATTGTAAAGTAAGTGGATAAGAGTTATAGATCAGCATTTCTTTTGACTGAAACCAGCCTGCAATCTTTTATCCTAGTTACAAGGGCTAACTGTATTAGGCATTTATTTTTTAAAACTTGCCAATGACATGCAAGGCCTTGAGCCTTGAACCAGTCCATGATGGTTTGAGATGTTATACAACAACTAATTTGTATTACCAAAGCCAGTATGTTTTCATCTGCTGCTGCTGCTTTGCATTGTTTACTTGTAACACCTATATTTCTATAATTTGTTTCTGTTTCCTGTGTTAAAACTATCACTATG</gDNA_template>
            <first_frame> E  V  I  K  N  G  G  D  K  H  K  V  R  N  *  L  L  C  L  N  K  H  F  L  L  Q  R  K  F  N  *  P  L  E  T  P  N  V  N  S  L  L  F  F  F  F  F  F  H  L  N  E  K  P  Y  P  Q  C  P  T  P  H  S  K  L  V  *  V  L  L  Y  S  E  N  K  *  *  W  L  L  N  F  R  S  L  C  F  Y  F  L  V  F  C  F  T  S  V  L  L  L  L :   F  L  I  R  H  K  *  F  P  L  L  G  I  K  V  M  M  M  :  E  D  V  I  L  V  G  L  T  A  Q  K  G  K  S  A  S  N  I  M  L  R  L  C  N  G  M  N  Q  R  L  T  A  M  V  L  E  E  T  W  L  P  *  H  L  Q  K  N  *  T  L  S  R  S  S  V  A  M  I  V  T  D  A  G  L  V  E  G  A  S  I  S  Q  L  G  W  V  G  N  G  L  I  M  L  L  A  G  M  R  V  L  L  L  R  Q  L  W  T  Q  V  A  K  I  S  H  A  M  A  L  S  R  W  I  C  V  H  R  *  S  V  V  L  L  *  L  R  D  A  M  *  L  M  L  L  Y  A  H  L  M  L  :  G  A  S  V  A  I  C  G  A  T  G  S  I  S  L  F  L  Q  L  L  V  G  *  S  F  A  L  L  W  L  L  *  Y  G  F  L  Y  L  G  E  V  K  D  A  K  D  H  C  V  L  H  *  H  *  F  P  R  L  G  K  F  S  V  V  M  K  *  S  P  *  Q  R  I  S  V  K  Q  I  V  S  L  G  T  P  K  Q  V  V  P  I  V  G  F  Y  L  M  V  Q  G  W  L  *  K  D  *  R  G  A  V  F  R  G  R  K  S  S  T  L  R  L  E  G  L  Q  D  F  I  I  Q  I  W  Y  L  S  K  D  V  A  I  I  M  V  T  A  I  F  C  T  S  S  S  S  M  D  P  W  I  G  G  Y  T  I  F  L  E  E  V  G  V  W  T  G  A  *  E  *  R  S  P  P  P  L  L  K  G  L   : R  F  F  M  T  K  *  S  H  K  L  C  I  G  I  S  V  Q  A  M  S  F  L  T  K  N  L  A  P  I  *  W  E  L  V  C  L  S  L  C  H  G  K  S  C  T  R  G  E  S  W  Q  V  V  L  M  G  I  L  L  R  S  L  F  T  E  M  S  L  L  Q  R  V  T  S  T  A  L  E  S  S  C  L  K  *  L  V  D  E  D  Q  H  R  Q  *  I  L  L  D  G  K  V  Y  L  N  G  P  R  L  W  C  K  L  I  D  M  L  N  S  W  I  L  S  Y  H  L  L  P  L  L  R  F  L  K  L  E  S  S  K  K  L  L  I  L  F  I  L  V  H  N  M  Y  H  Q  C  V  R  G  C  H  T  S  S  I  S  Y  N  N  *  L  S  L  L  L  *  S  K  W  I  R  V  I  D  Q  H  F  F  *  L  K  P  A  C  N  L  L  S  *  L  Q  G  L  T  V  L  G  I  Y  F  L  K  L  A  N  D  M  Q  G  L  E  P  *  T  S  P  *  W  F  E  M  L  Y  N  N  *  F  V  L  P  K  P  V  C  F  H  L  L  L  L  L  C  I  V  Y  L  *  H  L  Y  F  Y  N  L  F  L  F  P  V  L  K  L  S  L   </first_frame>
            <second_frame>  K  S  L  K  M  V  G  T  N  I  R  *  E  I  N  Y  S  V  *  T  N  T  F  F  F  K  E  N  S  T  N  H  W  R  L  Q  M  *  T  L  Y  S  S  F  F  F  F  S  I  *  T  K  N  P  I  H  N  A  Q  P  H  T  Q  N  *  S  R  F  C  Y  T  V  R  T  S  D  D  G  C  *  T  S  V  P  F  V  S  T  F  L  F  S  A  S  P  L  C  F  Y  F   : C  F  *  *  D  T  S  S  F  L  C  W  E  S  K  S  *  *  W :   K  M  *  S  W  L  V  *  R  P  K  R  E  K  V  L  Q  I  L  C  Y  V  F  A  M  E  *  I  R  D  L  L  Q  W  F  W  R  K  P  G  C  H  N  I  F  R  R  T  E  L  C  P  E  A  L  W  Q  *  *  *  R  M  L  G  W  W  K  E  H  Q  Y  H  S  W  V  G  L  E  M  V  *  *  C  F  *  L  E  *  E  Y  C  S  *  D  N  F  G  L  K  L  Q  K  F  L  M  L  W  L  *  V  G  G  F  V  Y  I  D  N  Q  W  C  Y  Y  S  *  E  M  Q  C  N  S  C  F  Y  M  H  T  *  C  W :   E  Q  V  S  P  Y  A  V  P  Q  G  V  S  H  Y  S  C  S  C  *  W  V  D  P  L  H  Y  F  G  Y  C  D  M  A  S  C  I  *  A  K  *  K  T  Q  K  I  I  A  C  F  I  S  I  S  S  P  V  L  E  N  F  Q  S  *  *  S  K  V  H  D  K  E  F  Q  *  S  K  S  S  P  W  G  R  Q  N  R  W  Y  L  *  W  A  F  T  *  W  F  K  G  G  C  E  K  I  E  E  V  R  Y  S  E  E  E  R  V  L  L  *  D  W  K  G  C  K  T  S  S  F  K  S  G  I  Y  Q  R  M  L  L  S  S  W  *  P  L  Y  S  V  R  V  H  H  Q  W  T  P  G  *  V  A  T  P  Y  S  *  R  R  *  E  F  G  L  E  H  E  N  E  G  R  H  H  P  C  S  R  D  C  :  V  S  S  *  Q  N  E  A  T  S  C  A  *  G  Y  P  C  K  Q  C  P  S  *  R  R  I  W  R  P  S  N  G  S  W  S  V  *  V  C  A  M  G  N  H  A  R  E  E  S  H  G  R  W  Y  S  W  V  S  C  S  G  V  C  L  Q  K  *  A  Y  Y  K  E  *  R  L  Q  L  W  S  P  L  A  *  N  N  *  W  T  K  T  S  T  G  S  R  F  C  W  M  A  K  Y  I  *  M  G  H  A  S  G  A  S  S  S  I  C  *  T  L  G  S  S  H  I  I  F  F  L  F  S  D  S  *  S  W  S  H  P  K  S  C  *  S  C  L  F  L  Y  T  T  C  T  I  N  A  S  E  D  V  T  R  R  P  S  A  T  T  I  S  S  A  S  Y  C  K  V  S  G  *  E  L  *  I  S  I  S  F  D  *  N  Q  P  A  I  F  Y  P  S  Y  K  G  *  L  Y  *  A  F  I  F  *  N  L  P  M  T  C  K  A  L  S  L  E  P  V  H  D  G  L  R  C  Y  T  T  T  N  L  Y  Y  Q  S  Q  Y  V  F  I  C  C  C  C  F  A  L  F  T  C  N  T  Y  I  S  I  I  C  F  C  F  L  C  *  N  Y  H  Y  </second_frame>
            <third_frame>   S  H  *  K  W  W  G  Q  T  *  G  E  K  L  T  T  L  S  E  Q  T  L  S  S  S  K  K  I  Q  L  T  I  G  D  S  K  C  E  L  F  T  L  L  F  F  F  F  P  S  K  R  K  T  L  S  T  M  P  N  P  T  L  K  I  S  L  G  F  A  I  Q  *  E  Q  V  M  M  A  V  K  L  P  F  P  L  F  L  L  S  C  F  L  L  H  L  C  A  S  T  S  :  V  S  N  K  T  Q  V  V  S  S  A  G  N  Q  S  H  D  D   : G  R  C  D  P  G  W  F  N  G  P  K  G  K  K  C  F  K  Y  Y  A  T  S  L  Q  W  N  E  S  E  T  Y  C  N  G  F  G  G  N  L  A  A  I  T  S  S  E  E  L  N  F  V  Q  K  L  C  G  N  D  S  N  G  C  W  V  G  G  R  S  I  N  I  T  A  G  L  G  W  K  W  S  D  N  A  S  S  W  N  E  S  I  A  P  K  T  T  L  D  S  S  C  K  N  F  S  C  Y  G  F  K  S  V  D  L  C  T  S  I  I  S  G  A  I  I  A  E  R  C  N  V  T  H  A  S  I  C  T  L  D  A   : G  S  K  C  R  H  M  R  C  H  R  E  Y  L  I  I  L  A  V  V  S  G  L  I  L  C  T  T  L  A  I  V  I  W  L  L  V  F  R  R  S  K  R  R  K  R  S  L  R  A  S  L  A  L  V  P  P  S  W  K  I  F  S  R  D  E  V  K  S  M  T  K  N  F  S  E  A  N  R  L  L  G  D  A  K  T  G  G  T  Y  S  G  L  L  P  D  G  S  R  V  A  V  K  R  L  K  R  C  G  I  Q  R  K  K  E  F  Y  S  E  I  G  R  V  A  R  L  H  H  S  N  L  V  S  I  K  G  C  C  Y  H  H  G  D  R  Y  I  L  Y  E  F  I  I  N  G  P  L  D  R  W  L  H  H  I  P  R  G  G  R  S  L  D  W  S  M  R  M  K  V  A  T  T  L  A  Q  G  I  A :   F  L  H  D  K  M  K  P  Q  V  V  H  R  D  I  R  A  S  N  V  L  L  D  E  E  F  G  A  H  L  M  G  V  G  L  S  K  F  V  P  W  E  I  M  H  E  R  R  V  M  A  G  G  T  H  G  Y  L  A  P  E  F  V  Y  R  N  E  L  T  T  K  S  D  V  Y  S  F  G  V  L  L  L  E  I  I  S  G  R  R  P  A  Q  A  V  D  S  V  G  W  Q  S  I  F  E  W  A  T  P  L  V  Q  A  H  R  Y  V  E  L  L  D  P  L  I  S  S  S  S  S  S  Q  I  P  E  V  G  V  I  Q  K  V  V  D  L  V  Y  S  C  T  Q  H  V  P  S  M  R  P  R  M  S  H  V  V  H  Q  L  Q  Q  L  A  Q  P  P  I  V  K  *  V  D  K  S  Y  R  S  A  F  L  L  T  E  T  S  L  Q  S  F  I  L  V  T  R  A  N  C  I  R  H  L  F  F  K  T  C  Q  *  H  A  R  P  *  A  L  N  Q  S  M  M  V  *  D  V  I  Q  Q  L  I  C  I  T  K  A  S  M  F  S  S  A  A  A  A  L  H  C  L  L  V  T  P  I  F  L  *  F  V  S  V  S  C  V  K  T  I  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73090" stop="73007"/>
                    <exon start="72874" stop="72820"/>
                    <exon start="71830" stop="71411"/>
                    <exon start="71162" stop="70604"/>
                    <exon start="69112" stop="68584"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQVMMAVKLPFPLFLLSCFLLHLCASTSVSNKTQVVSSAGNQSHDDGRCDPGWFNGPKGKKCFKYYATSLQWNESETYCNGFGGNLAAITSSEELNFVQKLCGNDSNGCWVGGRSINITAGLGWKWSDNASSWNESIAPKTTLDSSCKNFSCYGFKSVDLCTSIISGAIIAERCNVTHASICTLDAGSKCRHMRCHREYLIILAVVSGLILCTTLAIVIWLLVFRRSKRRKRSLRASLALVPPSWKIFSRDEVKSMTKNFSEANRLLGDAKTGGTYSGLLPDGSRVAVKRLKRCGIQRKKEFYSEIGRVARLHHSNLVSIKGCCYHHGDRYILYEFIINGPLDRWLHHIPRGGRSLDWSMRMKVATTLAQGIAFLHDKMKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPWEIMHERRVMAGGTHGYLAPEFVYRNELTTKSDVYSFGVLLLEIISGRRPAQAVDSVGWQSIFEWATPLVQAHRYVELLDPLISSSSSSQIPEVGVIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQLAQPPIVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="74455" PGL_stop="77978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74480" e_stop="74724"/>
            <exon e_start="75016" e_stop="75163"/>
            <exon e_start="76315" e_stop="76400"/>
            <exon e_start="76715" e_stop="76852"/>
            <exon e_start="77475" e_stop="77978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74480" e_stop="74724" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75016" e_stop="75163" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.495" acc_prob="0.930">
            <gDNA_intron_boundary i_start="75164" i_stop="76314" i_length="1151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76315" e_stop="76400" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76715" e_stop="76852" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.719" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="77475" e_stop="77978" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74480" stop="74724"/>
              <exon start="75016" stop="75163"/>
              <exon start="76315" stop="76400"/>
              <exon start="76715" stop="76852"/>
              <exon start="77475" stop="77617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74481" stop="74660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74494" stop="74724"/>
              <exon start="75016" stop="75163"/>
              <exon start="76315" stop="76400"/>
              <exon start="76715" stop="76852"/>
              <exon start="77475" stop="77718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74596" stop="74724"/>
              <exon start="75016" stop="75072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75050" stop="75163"/>
              <exon start="76315" stop="76400"/>
              <exon start="76715" stop="76852"/>
              <exon start="77475" stop="77978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75090" stop="75163"/>
              <exon start="76315" stop="76400"/>
              <exon start="76715" stop="76852"/>
              <exon start="77475" stop="77978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77727" stop="77912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC : TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTG : GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG : CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG : GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCTTGGAAAACTTAAGGAATTTTAGTAAATCTTATGCCAAGGCAGAGCAATAAAGTAGGCAATTTCCAAGCATTCAAAGATAAATTCATAAGTTGCATCTGTTTTGAAGGTCTTGTAACTTTTCATTTCAAGATTTTGTTAGTTTGAGGGTAGACTTCTCATCCCCTTAATTGAGGACACGGGGTAATATTTTCCCAGTATCATCCTTGTAGCTGCATTTTTTTGCATTTTGAAATGAAAGATTTCACATCAATTCTTGAAAA</gDNA_template>
            <first_frame> R  T  L  T  S  V  W  N  F  W  E  M  G  G  R  T  M  E  W  A  A  R  A  N  H  L  G  G  I  P  R  K  V  V  I  T  A  I  G  T  F  A  K  A  V  A  N  L  L  N  T  T  T  V  H  N  G  D  V  L  I  R  L  V  R  S  R  P  A  G  V  P  L  L  T  V  S  N  H  M  S  T :   L  D  D  P  V  M  W  A  F  K  G  F  P  I  C  D  A  K  L  A  R  W  V  L  A  A  E  D  I  C  F  K  N  T  V  L  S  Y  F  F  R  I  G  V  *  S  V  G  L  :  G  N  V  Y  Q  *  Q  E  G  V  E  Y  I  K  N  I  *  T  K  L  L  I  V  *  L  K  E  P  G :   C  I  H  F  Q  K  G  R  S  V  K  K  M  L  L  *  D  D  *  S  G  E  L  P  V  S  L  L  V  P  P  *  L  Q  L  S  C  Q  L  S  I  M  V  L  K  R :   L  C  L  R  T  M  L  L  G  E  D  L  Q  S  L  Y  G  T  R  R  *  K  *  L  L  V  S  Q  W  N  S  T  F  L  N  C  E  R  W  L  Y  L  S  L  G  I  H  H  L  P  V  G  S  G  Q  E  T  S  S  G  D  *  T  K  Q  H  K  N  V  C  T  *  L  Y  L  I  K  S  E  L  P  W  K  T  *  G  I  L  V  N  L  M  P  R  Q  S  N  K  V  G  N  F  Q  A  F  K  D  K  F  I  S  C  I  C  F  E  G  L  V  T  F  H  F  K  I  L  L  V  *  G  *  T  S  H  P  L  N  *  G  H  G  V  I  F  S  Q  Y  H  P  C  S  C  I  F  L  H  F  E  M  K  D  F  T  S  I  L  E   </first_frame>
            <second_frame>  G  L  *  H  Q  C  G  I  F  G  K  W  V  A  G  R  W  N  G  R  R  E  Q  T  T  W  G  V  Y  L  G  K  W  *  S  R  R  *  V  L  S  L  R  R  W  P  I  Y  *  T  P  P  P  C  T  T  A  T  S  L  S  G  *  F  D  P  A  Q  P  A  F  L  S  S  P  S  A  I  T  C  P   : L  *  M  T  Q  L  C  G  H  S  K  V  F  Q  F  V  M  Q  S  W  L  D  G  Y  W  Q  R  K  T  Y  A  L  K  I  Q  Y  C  H  T  F  S  G  S  V  C  N  L  L  V  W :   E  M  Y  T  N  N  K  R  G  W  N  I  S  R  T  Y  E  R  S  S  *  S  F  D  *  R  S  L   : A  A  Y  I  S  R  R  E  G  L  S  R  R  C  S  Y  K  T  I  E  V  G  N  C  Q  S  H  C  S  C  P  R  D  S  N  C  L  A  N  Y  P  S  W  F  *  K   : G  Y  A  *  E  L  C  F  W  E  K  T  S  S  P  F  M  E  P  G  D  K  N  S  C  W  *  A  N  G  I  Q  P  S  *  T  A  R  D  G  S  I  S  V  S  G  F  I  I  F  Q  W  A  V  A  K  K  H  P  R  G  I  E  R  S  S  T  K  M  S  V  H  D  Y  I  *  S  N  P  N  Y  L  G  K  L  K  E  F  *  *  I  L  C  Q  G  R  A  I  K  *  A  I  S  K  H  S  K  I  N  S  *  V  A  S  V  L  K  V  L  *  L  F  I  S  R  F  C  *  F  E  G  R  L  L  I  P  L  I  E  D  T  G  *  Y  F  P  S  I  I  L  V  A  A  F  F  C  I  L  K  *  K  I  S  H  Q  F  L  K  </second_frame>
            <third_frame>   D  F  D  I  S  V  E  F  L  G  N  G  W  P  D  D  G  M  G  G  E  S  K  P  P  G  G  Y  T  S  E  S  G  D  H  G  D  R  Y  F  R  *  G  G  G  Q  S  I  E  H  H  H  R  A  Q  R  R  R  P  Y  P  A  S  S  I  P  P  S  R  R  S  S  P  H  R  Q  Q  S  H  V  H  :  F  R  *  P  S  Y  V  G  I  Q  R  F  S  N  L  *  C  K  A  G  S  M  G  T  G  S  G  R  H  M  L  *  K  Y  S  I  V  I  L  F  P  D  R  C  V  I  C  W  S   : G  K  C  I  P  I  T  R  G  G  G  I  Y  Q  E  H  M  N  E  A  L  D  R  L  T  E  G  A  W  :  L  H  T  F  P  E  G  K  V  C  Q  E  D  A  P  I  R  R  L  K  W  G  T  A  S  L  I  A  R  A  P  V  T  P  I  V  L  P  I  I  H  H  G  F  E  K  :  V  M  P  E  N  Y  A  F  G  R  R  P  P  V  P  L  W  N  Q  E  I  K  I  V  V  G  E  P  M  E  F  N  L  P  E  L  R  E  M  A  L  S  Q  S  R  D  S  S  S  S  S  G  Q  W  P  R  N  I  L  G  G  L  N  E  A  A  Q  K  C  L  Y  M  T  I  S  D  Q  I  R  T  T  L  E  N  L  R  N  F  S  K  S  Y  A  K  A  E  Q  *  S  R  Q  F  P  S  I  Q  R  *  I  H  K  L  H  L  F  *  R  S  C  N  F  S  F  Q  D  F  V  S  L  R  V  D  F  S  S  P  *  L  R  T  R  G  N  I  F  P  V  S  S  L  *  L  H  F  F  A  F  *  N  E  R  F  H  I  N  S  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75112" stop="75163"/>
                    <exon start="76315" stop="76400"/>
                    <exon start="76715" stop="76852"/>
                    <exon start="77475" stop="77768"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYSIVILFPDRCVICWSGKCIPITRGGGIYQEHMNEALDRLTEGAWLHTFPEGKVCQEDAPIRRLKWGTASLIARAPVTPIVLPIIHHGFEKVMPENYAFGRRPPVPLWNQEIKIVVGEPMEFNLPELREMALSQSRDSSSSSGQWPRNILGGLNEAAQKCLYMTISDQIRTTLENLRNFSKSYAKAEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74455" e_stop="74724"/>
            <exon e_start="75016" e_stop="75143"/>
            <exon e_start="76315" e_stop="76400"/>
            <exon e_start="76715" e_stop="76852"/>
            <exon e_start="77475" e_stop="77912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74455" e_stop="74724" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75016" e_stop="75143" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.930">
            <gDNA_intron_boundary i_start="75144" i_stop="76314" i_length="1171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76315" e_stop="76400" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76401" i_stop="76714" i_length="314"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76715" e_stop="76852" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.719" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="77475" e_stop="77912" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74455" stop="74724"/>
              <exon start="75016" stop="75143"/>
              <exon start="76315" stop="76400"/>
              <exon start="76715" stop="76852"/>
              <exon start="77475" stop="77567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74481" stop="74660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74490" stop="74724"/>
              <exon start="75016" stop="75143"/>
              <exon start="76315" stop="76400"/>
              <exon start="76715" stop="76852"/>
              <exon start="77475" stop="77757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74520" stop="74724"/>
              <exon start="75016" stop="75143"/>
              <exon start="76315" stop="76400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74569" stop="74724"/>
              <exon start="75016" stop="75143"/>
              <exon start="76315" stop="76388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74596" stop="74724"/>
              <exon start="75016" stop="75072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77727" stop="77912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCAATGAAAGGAGTTTATGCCGCCGGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC : TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCG : GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG : CTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG : GTTATGCCTGAGAACTATGCTTTTGGGAGAAGACCTCCAGTCCCTTTATGGAACCAGGAGATAAAAATAGTTGTTGGTGAGCCAATGGAATTCAACCTTCCTGAACTGCGAGAGATGGCTCTATCTCAGTCTCGGGATTCATCATCTTCCAGTGGGCAGTGGCCAAGAAACATCCTCGGGGGATTGAACGAAGCAGCACAAAAATGTCTGTACATGACTATATCTGATCAAATCCGAACTACCTTGGAAAACTTAAGGAATTTTAGTAAATCTTATGCCAAGGCAGAGCAATAAAGTAGGCAATTTCCAAGCATTCAAAGATAAATTCATAAGTTGCATCTGTTTTGAAGGTCTTGTAACTTTTCATTTCAAGATTTTGTTAGTTTGAGGGTAGACTTCTCATCCCCTTAATTGAGGACACGGGGTAATATTTTCCCA</gDNA_template>
            <first_frame> A  Q  *  K  E  F  M  P  P  D  F  D  I  S  V  E  F  L  G  N  G  W  P  D  D  G  M  G  G  E  S  K  P  P  G  G  Y  T  S  E  S  G  D  H  G  D  R  Y  F  R  *  G  G  G  Q  S  I  E  H  H  H  R  A  Q  R  R  R  P  Y  P  A  S  S  I  P  P  S  R  R  S  S  P  H  R  Q  Q  S  H  V  H  :  F  R  *  P  S  Y  V  G  I  Q  R  F  S  N  L  *  C  K  A  G  S  M  G  T  G  S  G  R  H  M  L  *  K  Y  S  I  V  I  L  F  P  D  R :   E  M  Y  T  N  N  K  R  G  W  N  I  S  R  T  Y  E  R  S  S  *  S  F  D  *  R  S  L   : A  A  Y  I  S  R  R  E  G  L  S  R  R  C  S  Y  K  T  I  E  V  G  N  C  Q  S  H  C  S  C  P  R  D  S  N  C  L  A  N  Y  P  S  W  F  *  K   : G  Y  A  *  E  L  C  F  W  E  K  T  S  S  P  F  M  E  P  G  D  K  N  S  C  W  *  A  N  G  I  Q  P  S  *  T  A  R  D  G  S  I  S  V  S  G  F  I  I  F  Q  W  A  V  A  K  K  H  P  R  G  I  E  R  S  S  T  K  M  S  V  H  D  Y  I  *  S  N  P  N  Y  L  G  K  L  K  E  F  *  *  I  L  C  Q  G  R  A  I  K  *  A  I  S  K  H  S  K  I  N  S  *  V  A  S  V  L  K  V  L  *  L  F  I  S  R  F  C  *  F  E  G  R  L  L  I  P  L  I  E  D  T  G  *  Y  F  P  </first_frame>
            <second_frame>  P  N  E  R  S  L  C  R  R  T  L  T  S  V  W  N  F  W  E  M  G  G  R  T  M  E  W  A  A  R  A  N  H  L  G  G  I  P  R  K  V  V  I  T  A  I  G  T  F  A  K  A  V  A  N  L  L  N  T  T  T  V  H  N  G  D  V  L  I  R  L  V  R  S  R  P  A  G  V  P  L  L  T  V  S  N  H  M  S  T :   L  D  D  P  V  M  W  A  F  K  G  F  P  I  C  D  A  K  L  A  R  W  V  L  A  A  E  D  I  C  F  K  N  T  V  L  S  Y  F  F  R  I   : G  K  C  I  P  I  T  R  G  G  G  I  Y  Q  E  H  M  N  E  A  L  D  R  L  T  E  G  A  W  :  L  H  T  F  P  E  G  K  V  C  Q  E  D  A  P  I  R  R  L  K  W  G  T  A  S  L  I  A  R  A  P  V  T  P  I  V  L  P  I  I  H  H  G  F  E  K  :  V  M  P  E  N  Y  A  F  G  R  R  P  P  V  P  L  W  N  Q  E  I  K  I  V  V  G  E  P  M  E  F  N  L  P  E  L  R  E  M  A  L  S  Q  S  R  D  S  S  S  S  S  G  Q  W  P  R  N  I  L  G  G  L  N  E  A  A  Q  K  C  L  Y  M  T  I  S  D  Q  I  R  T  T  L  E  N  L  R  N  F  S  K  S  Y  A  K  A  E  Q  *  S  R  Q  F  P  S  I  Q  R  *  I  H  K  L  H  L  F  *  R  S  C  N  F  S  F  Q  D  F  V  S  L  R  V  D  F  S  S  P  *  L  R  T  R  G  N  I  F  P </second_frame>
            <third_frame>   P  M  K  G  V  Y  A  A  G  L  *  H  Q  C  G  I  F  G  K  W  V  A  G  R  W  N  G  R  R  E  Q  T  T  W  G  V  Y  L  G  K  W  *  S  R  R  *  V  L  S  L  R  R  W  P  I  Y  *  T  P  P  P  C  T  T  A  T  S  L  S  G  *  F  D  P  A  Q  P  A  F  L  S  S  P  S  A  I  T  C  P   : L  *  M  T  Q  L  C  G  H  S  K  V  F  Q  F  V  M  Q  S  W  L  D  G  Y  W  Q  R  K  T  Y  A  L  K  I  Q  Y  C  H  T  F  S  G  S  :  G  N  V  Y  Q  *  Q  E  G  V  E  Y  I  K  N  I  *  T  K  L  L  I  V  *  L  K  E  P  G :   C  I  H  F  Q  K  G  R  S  V  K  K  M  L  L  *  D  D  *  S  G  E  L  P  V  S  L  L  V  P  P  *  L  Q  L  S  C  Q  L  S  I  M  V  L  K  R :   L  C  L  R  T  M  L  L  G  E  D  L  Q  S  L  Y  G  T  R  R  *  K  *  L  L  V  S  Q  W  N  S  T  F  L  N  C  E  R  W  L  Y  L  S  L  G  I  H  H  L  P  V  G  S  G  Q  E  T  S  S  G  D  *  T  K  Q  H  K  N  V  C  T  *  L  Y  L  I  K  S  E  L  P  W  K  T  *  G  I  L  V  N  L  M  P  R  Q  S  N  K  V  G  N  F  Q  A  F  K  D  K  F  I  S  C  I  C  F  E  G  L  V  T  F  H  F  K  I  L  L  V  *  G  *  T  S  H  P  L  N  *  G  H  G  V  I  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74456" stop="74724"/>
                    <exon start="75016" stop="75143"/>
                    <exon start="76315" stop="76400"/>
                    <exon start="76715" stop="76852"/>
                    <exon start="77475" stop="77768"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNERSLCRRTLTSVWNFWEMGGRTMEWAARANHLGGIPRKVVITAIGTFAKAVANLLNTTTVHNGDVLIRLVRSRPAGVPLLTVSNHMSTLDDPVMWAFKGFPICDAKLARWVLAAEDICFKNTVLSYFFRIGKCIPITRGGGIYQEHMNEALDRLTEGAWLHTFPEGKVCQEDAPIRRLKWGTASLIARAPVTPIVLPIIHHGFEKVMPENYAFGRRPPVPLWNQEIKIVVGEPMEFNLPELREMALSQSRDSSSSSGQWPRNILGGLNEAAQKCLYMTISDQIRTTLENLRNFSKSYAKAEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74481" e_stop="74724"/>
            <exon e_start="75016" e_stop="75163"/>
            <exon e_start="76315" e_stop="76400"/>
            <exon e_start="76714" e_stop="76852"/>
            <exon e_start="77475" e_stop="77502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.930" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.942"/>
          <exon-intron don_prob="0.719" acc_prob="0.986" e_score="0.971"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74481" e_stop="74724" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74725" i_stop="75015" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="75016" e_stop="75163" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.495" acc_prob="0.930">
            <gDNA_intron_boundary i_start="75164" i_stop="76314" i_length="1151"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="76315" e_stop="76400" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76401" i_stop="76713" i_length="313"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="76714" e_stop="76852" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.719" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76853" i_stop="77474" i_length="622"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77475" e_stop="77502" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74481" stop="74660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74522" stop="74724"/>
              <exon start="75016" stop="75163"/>
              <exon start="76315" stop="76400"/>
              <exon start="76714" stop="76852"/>
              <exon start="77475" stop="77502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74596" stop="74724"/>
              <exon start="75016" stop="75072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACTTTGACATCAGTGTGGAATTTTTGGGAAATGGGTGGCCGGACGATGGAATGGGCGGCGAGAGCAAACCACCTGGGGGGTATACCTCGGAAAGTGGTGATCACGGCGATAGGTACTTTCGCTAAGGCGGTGGCCAATCTATTGAACACCACCACCGTGCACAACGGCGACGTCCTTATCCGGCTAGTTCGATCCCGCCCAGCCGGCGTTCCTCTCCTCACCGTCAGCAATCACATGTCCAC : TTTAGATGACCCAGTTATGTGGGCATTCAAAGGTTTTCCAATTTGTGATGCAAAGCTGGCTCGATGGGTACTGGCAGCGGAAGACATATGCTTTAAAAATACAGTATTGTCATACTTTTTCCGGATCGGTGTGTAATCTGTTGGTCTG : GGAAATGTATACCAATAACAAGAGGGGGTGGAATATATCAAGAACATATGAACGAAGCTCTTGATCGTTTGACTGAAGGAGCCTGG : GCTGCATACATTTCCAGAAGGGAAGGTCTGTCAAGAAGATGCTCCTATAAGACGATTGAAGTGGGGAACTGCCAGTCTCATTGCTCGTGCCCCCGTGACTCCAATTGTCTTGCCAATTATCCATCATGGTTTTGAAAAG : GTTATGCCTGAGAACTATGCTTTTGGGA</gDNA_template>
            <first_frame> G  L  *  H  Q  C  G  I  F  G  K  W  V  A  G  R  W  N  G  R  R  E  Q  T  T  W  G  V  Y  L  G  K  W  *  S  R  R  *  V  L  S  L  R  R  W  P  I  Y  *  T  P  P  P  C  T  T  A  T  S  L  S  G  *  F  D  P  A  Q  P  A  F  L  S  S  P  S  A  I  T  C  P   : L  *  M  T  Q  L  C  G  H  S  K  V  F  Q  F  V  M  Q  S  W  L  D  G  Y  W  Q  R  K  T  Y  A  L  K  I  Q  Y  C  H  T  F  S  G  S  V  C  N  L  L  V  W :   E  M  Y  T  N  N  K  R  G  W  N  I  S  R  T  Y  E  R  S  S  *  S  F  D  *  R  S  L   : G  C  I  H  F  Q  K  G  R  S  V  K  K  M  L  L  *  D  D  *  S  G  E  L  P  V  S  L  L  V  P  P  *  L  Q  L  S  C  Q  L  S  I  M  V  L  K  R :   L  C  L  R  T  M  L  L  G </first_frame>
            <second_frame>  D  F  D  I  S  V  E  F  L  G  N  G  W  P  D  D  G  M  G  G  E  S  K  P  P  G  G  Y  T  S  E  S  G  D  H  G  D  R  Y  F  R  *  G  G  G  Q  S  I  E  H  H  H  R  A  Q  R  R  R  P  Y  P  A  S  S  I  P  P  S  R  R  S  S  P  H  R  Q  Q  S  H  V  H  :  F  R  *  P  S  Y  V  G  I  Q  R  F  S  N  L  *  C  K  A  G  S  M  G  T  G  S  G  R  H  M  L  *  K  Y  S  I  V  I  L  F  P  D  R  C  V  I  C  W  S   : G  K  C  I  P  I  T  R  G  G  G  I  Y  Q  E  H  M  N  E  A  L  D  R  L  T  E  G  A  W  :  A  A  Y  I  S  R  R  E  G  L  S  R  R  C  S  Y  K  T  I  E  V  G  N  C  Q  S  H  C  S  C  P  R  D  S  N  C  L  A  N  Y  P  S  W  F  *  K   : G  Y  A  *  E  L  C  F  W   </second_frame>
            <third_frame>   T  L  T  S  V  W  N  F  W  E  M  G  G  R  T  M  E  W  A  A  R  A  N  H  L  G  G  I  P  R  K  V  V  I  T  A  I  G  T  F  A  K  A  V  A  N  L  L  N  T  T  T  V  H  N  G  D  V  L  I  R  L  V  R  S  R  P  A  G  V  P  L  L  T  V  S  N  H  M  S  T :   L  D  D  P  V  M  W  A  F  K  G  F  P  I  C  D  A  K  L  A  R  W  V  L  A  A  E  D  I  C  F  K  N  T  V  L  S  Y  F  F  R  I  G  V  *  S  V  G  L  :  G  N  V  Y  Q  *  Q  E  G  V  E  Y  I  K  N  I  *  T  K  L  L  I  V  *  L  K  E  P  G :   L  H  T  F  P  E  G  K  V  C  Q  E  D  A  P  I  R  R  L  K  W  G  T  A  S  L  I  A  R  A  P  V  T  P  I  V  L  P  I  I  H  H  G  F  E  K  :  V  M  P  E  N  Y  A  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74483" stop="74724"/>
                    <exon start="75016" stop="75151"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLTSVWNFWEMGGRTMEWAARANHLGGIPRKVVITAIGTFAKAVANLLNTTTVHNGDVLIRLVRSRPAGVPLLTVSNHMSTLDDPVMWAFKGFPICDAKLARWVLAAEDICFKNTVLSYFFRIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="78343" PGL_stop="79476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78343" e_stop="79476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="78343" e_stop="79476" e_length="1134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78343" stop="78975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78343" stop="78777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78359" stop="79078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78360" stop="78844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78684" stop="79476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCTATTCCCTTTTCCAGTTCCCAGCCCTGAAAACAGTAGAAGAAACTGTGTCATCGCTTTTACCACTCCCCAAAACTACGCACCAAGATTATCTGAACTCATACATCTCAAAGGATGGACACCCCTTTGGTGTCCTACCGTCATTGTTGAATCTACGGAACAAACAATCTCTTCCATTCATCACTACCTCAACCCACAAGCTGGTATCGATGAACCCAATTCGTTTCTTGAAGAATTTTCAGCTCTAGCGTTCACTTCAAGAACTGGGATTACTGCTTTTTCACAAGCTTTATCTATGAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAGCTTCTGGATCGAGATTTCATTCGAAAAATGTGTGAAAACCCTGAAAGAATTCGAGTTTTGGTTCCTTCAGTTGCAACCCCATCTGGGTTAGTGGAGGCATTAGGATTAGGTCAAGGAAGAAAAGTGTTATGCCCAGTTCCATTAGTGATTGGGTTGAATGAACCACCTGTTGTGCCGAAATTCCTTGATGATTTATCGAAAAGGGGGTGGATTCCATTGAGATTAGACGCGTATGAGACGCGATGGGCAGGGGCGACATGCGCTGTGGATGTGGTGGCAAAGAGTGAAGAAGAGTGTGGATTTGATGCAATTGTGTTTACTAGTACTGGAGAAGTGGAAGGTTTGTTGAAGAGTTTGGAGGAATTTGGATTGGATTGGTCAATGGTGAGGAGGAGATGTCCAAGAATGGTGGTGGCAGCTCATGGCCCTGTTACAGCTGCTGGTGCTGAGAGTTTGGGTGTTGGCATTGATGTGGTAAGTTCAAATTTTGGTAGCTTTGATGGTGTGGTTGATGCATTAGCTCATAAATGGAAATCATTGCAAAATCAAGAATCTTGAAATTTGGTTTTTGCTCATCATTCAAAGTTTTGATTGGAGCTACAATTTGCTATTTATAGCCAAAACTTCTATAATTGTCTAGTTCACAGCATGTCTTTTTGTTTTGTACTAATTTGGAAAAGTTTTAGTAATTTTTGATGTTGTGAGTTACAAAGTTTTGATGTTTATATGGATGCAACATTTCTCATAAATGCAATCAATTGGAAA</gDNA_template>
            <first_frame> P  L  F  P  F  P  V  P  S  P  E  N  S  R  R  N  C  V  I  A  F  T  T  P  Q  N  Y  A  P  R  L  S  E  L  I  H  L  K  G  W  T  P  L  W  C  P  T  V  I  V  E  S  T  E  Q  T  I  S  S  I  H  H  Y  L  N  P  Q  A  G  I  D  E  P  N  S  F  L  E  E  F  S  A  L  A  F  T  S  R  T  G  I  T  A  F  S  Q  A  L  S  M  N  P  T  P  P  L  T  P  N  G  E  I  L  T  I  A  A  L  G  N  D  A  E  L  L  D  R  D  F  I  R  K  M  C  E  N  P  E  R  I  R  V  L  V  P  S  V  A  T  P  S  G  L  V  E  A  L  G  L  G  Q  G  R  K  V  L  C  P  V  P  L  V  I  G  L  N  E  P  P  V  V  P  K  F  L  D  D  L  S  K  R  G  W  I  P  L  R  L  D  A  Y  E  T  R  W  A  G  A  T  C  A  V  D  V  V  A  K  S  E  E  E  C  G  F  D  A  I  V  F  T  S  T  G  E  V  E  G  L  L  K  S  L  E  E  F  G  L  D  W  S  M  V  R  R  R  C  P  R  M  V  V  A  A  H  G  P  V  T  A  A  G  A  E  S  L  G  V  G  I  D  V  V  S  S  N  F  G  S  F  D  G  V  V  D  A  L  A  H  K  W  K  S  L  Q  N  Q  E  S  *  N  L  V  F  A  H  H  S  K  F  *  L  E  L  Q  F  A  I  Y  S  Q  N  F  Y  N  C  L  V  H  S  M  S  F  C  F  V  L  I  W  K  S  F  S  N  F  *  C  C  E  L  Q  S  F  D  V  Y  M  D  A  T  F  L  I  N  A  I  N  W  K </first_frame>
            <second_frame>  R  Y  S  L  F  Q  F  P  A  L  K  T  V  E  E  T  V  S  S  L  L  P  L  P  K  T  T  H  Q  D  Y  L  N  S  Y  I  S  K  D  G  H  P  F  G  V  L  P  S  L  L  N  L  R  N  K  Q  S  L  P  F  I  T  T  S  T  H  K  L  V  S  M  N  P  I  R  F  L  K  N  F  Q  L  *  R  S  L  Q  E  L  G  L  L  L  F  H  K  L  Y  L  *  T  P  H  P  H  *  P  Q  M  E  K  F  S  Q  L  Q  L  W  V  M  M  L  S  F  W  I  E  I  S  F  E  K  C  V  K  T  L  K  E  F  E  F  W  F  L  Q  L  Q  P  H  L  G  *  W  R  H  *  D  *  V  K  E  E  K  C  Y  A  Q  F  H  *  *  L  G  *  M  N  H  L  L  C  R  N  S  L  M  I  Y  R  K  G  G  G  F  H  *  D  *  T  R  M  R  R  D  G  Q  G  R  H  A  L  W  M  W  W  Q  R  V  K  K  S  V  D  L  M  Q  L  C  L  L  V  L  E  K  W  K  V  C  *  R  V  W  R  N  L  D  W  I  G  Q  W  *  G  G  D  V  Q  E  W  W  W  Q  L  M  A  L  L  Q  L  L  V  L  R  V  W  V  L  A  L  M  W  *  V  Q  I  L  V  A  L  M  V  W  L  M  H  *  L  I  N  G  N  H  C  K  I  K  N  L  E  I  W  F  L  L  I  I  Q  S  F  D  W  S  Y  N  L  L  F  I  A  K  T  S  I  I  V  *  F  T  A  C  L  F  V  L  Y  *  F  G  K  V  L  V  I  F  D  V  V  S  Y  K  V  L  M  F  I  W  M  Q  H  F  S  *  M  Q  S  I  G   </second_frame>
            <third_frame>   A  I  P  F  S  S  S  Q  P  *  K  Q  *  K  K  L  C  H  R  F  Y  H  S  P  K  L  R  T  K  I  I  *  T  H  T  S  Q  R  M  D  T  P  L  V  S  Y  R  H  C  *  I  Y  G  T  N  N  L  F  H  S  S  L  P  Q  P  T  S  W  Y  R  *  T  Q  F  V  S  *  R  I  F  S  S  S  V  H  F  K  N  W  D  Y  C  F  F  T  S  F  I  Y  E  P  H  T  P  I  N  P  K  W  R  N  S  H  N  C  S  F  G  *  *  C  *  A  S  G  S  R  F  H  S  K  N  V  *  K  P  *  K  N  S  S  F  G  S  F  S  C  N  P  I  W  V  S  G  G  I  R  I  R  S  R  K  K  S  V  M  P  S  S  I  S  D  W  V  E  *  T  T  C  C  A  E  I  P  *  *  F  I  E  K  G  V  D  S  I  E  I  R  R  V  *  D  A  M  G  R  G  D  M  R  C  G  C  G  G  K  E  *  R  R  V  W  I  *  C  N  C  V  Y  *  Y  W  R  S  G  R  F  V  E  E  F  G  G  I  W  I  G  L  V  N  G  E  E  E  M  S  K  N  G  G  G  S  S  W  P  C  Y  S  C  W  C  *  E  F  G  C  W  H  *  C  G  K  F  K  F  W  *  L  *  W  C  G  *  C  I  S  S  *  M  E  I  I  A  K  S  R  I  L  K  F  G  F  C  S  S  F  K  V  L  I  G  A  T  I  C  Y  L  *  P  K  L  L  *  L  S  S  S  Q  H  V  F  L  F  C  T  N  L  E  K  F  *  *  F  L  M  L  *  V  T  K  F  *  C  L  Y  G  C  N  I  S  H  K  C  N  Q  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78343" stop="79269"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLFPFPVPSPENSRRNCVIAFTTPQNYAPRLSELIHLKGWTPLWCPTVIVESTEQTISSIHHYLNPQAGIDEPNSFLEEFSALAFTSRTGITAFSQALSMNPTPPLTPNGEILTIAALGNDAELLDRDFIRKMCENPERIRVLVPSVATPSGLVEALGLGQGRKVLCPVPLVIGLNEPPVVPKFLDDLSKRGWIPLRLDAYETRWAGATCAVDVVAKSEEECGFDAIVFTSTGEVEGLLKSLEEFGLDWSMVRRRCPRMVVAAHGPVTAAGAESLGVGIDVVSSNFGSFDGVVDALAHKWKSLQNQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79370" PGL_stop="78591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79370" e_stop="78591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79370" e_stop="78591" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79370" stop="78591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAGACATGCTGTGAACTAGACAATTATAGAAGTTTTGGCTATAAATAGCAAATTGTAGCTCCAATCAAAACTTTGAATGATGAGCAAAAACCAAATTTCAAGATTCTTGATTTTGCAATGATTTCCATTTATGAGCTAATGCATCAACCACACCATCAAAGCTACCAAAATTTGAACTTACCACATCAATGCCAACACCCAAACTCTCAGCACCAGCAGCTGTAACAGGGCCATGAGCTGCCACCACCATTCTTGGACATCTCCTCCTCACCATTGACCAATCCAATCCAAATTCCTCCAAACTCTTCAACAAACCTTCCACTTCTCCAGTACTAGTAAACACAATTGCATCAAATCCACACTCTTCTTCACTCTTTGCCACCACATCCACAGCGCATGTCGCCCCTGCCCATCGCGTCTCATACGCGTCTAATCTCAATGGAATCCACCCCCTTTTCGATAAATCATCAAGGAATTTCGGCACAACAGGTGGTTCATTCAACCCAATCACTAATGGAACTGGGCATAACACTTTTCTTCCTTGACCTAATCCTAATGCCTCCACTAACCCAGATGGGGTTGCAACTGAAGGAACCAAAACTCGAATTCTTTCAGGGTTTTCACACATTTTTCGAATGAAATCTCGATCCAGAAGCTCAGCATCATTACCCAAAGCTGCAATTGTGAGAATTTCTCCATTTGGGGTTAATGGGGGTGTGGGGTTCATAGATAAAGCTTGTGAAAAAGCAGTAATCCCAGTTCTTGAAGTGAACGCT</gDNA_template>
            <first_frame> Q  K  D  M  L  *  T  R  Q  L  *  K  F  W  L  *  I  A  N  C  S  S  N  Q  N  F  E  *  *  A  K  T  K  F  Q  D  S  *  F  C  N  D  F  H  L  *  A  N  A  S  T  T  P  S  K  L  P  K  F  E  L  T  T  S  M  P  T  P  K  L  S  A  P  A  A  V  T  G  P  *  A  A  T  T  I  L  G  H  L  L  L  T  I  D  Q  S  N  P  N  S  S  K  L  F  N  K  P  S  T  S  P  V  L  V  N  T  I  A  S  N  P  H  S  S  S  L  F  A  T  T  S  T  A  H  V  A  P  A  H  R  V  S  Y  A  S  N  L  N  G  I  H  P  L  F  D  K  S  S  R  N  F  G  T  T  G  G  S  F  N  P  I  T  N  G  T  G  H  N  T  F  L  P  *  P  N  P  N  A  S  T  N  P  D  G  V  A  T  E  G  T  K  T  R  I  L  S  G  F  S  H  I  F  R  M  K  S  R  S  R  S  S  A  S  L  P  K  A  A  I  V  R  I  S  P  F  G  V  N  G  G  V  G  F  I  D  K  A  C  E  K  A  V  I  P  V  L  E  V  N  A </first_frame>
            <second_frame>  K  K  T  C  C  E  L  D  N  Y  R  S  F  G  Y  K  *  Q  I  V  A  P  I  K  T  L  N  D  E  Q  K  P  N  F  K  I  L  D  F  A  M  I  S  I  Y  E  L  M  H  Q  P  H  H  Q  S  Y  Q  N  L  N  L  P  H  Q  C  Q  H  P  N  S  Q  H  Q  Q  L  *  Q  G  H  E  L  P  P  P  F  L  D  I  S  S  S  P  L  T  N  P  I  Q  I  P  P  N  S  S  T  N  L  P  L  L  Q  Y  *  *  T  Q  L  H  Q  I  H  T  L  L  H  S  L  P  P  H  P  Q  R  M  S  P  L  P  I  A  S  H  T  R  L  I  S  M  E  S  T  P  F  S  I  N  H  Q  G  I  S  A  Q  Q  V  V  H  S  T  Q  S  L  M  E  L  G  I  T  L  F  F  L  D  L  I  L  M  P  P  L  T  Q  M  G  L  Q  L  K  E  P  K  L  E  F  F  Q  G  F  H  T  F  F  E  *  N  L  D  P  E  A  Q  H  H  Y  P  K  L  Q  L  *  E  F  L  H  L  G  L  M  G  V  W  G  S  *  I  K  L  V  K  K  Q  *  S  Q  F  L  K  *  T   </second_frame>
            <third_frame>   K  R  H  A  V  N  *  T  I  I  E  V  L  A  I  N  S  K  L  *  L  Q  S  K  L  *  M  M  S  K  N  Q  I  S  R  F  L  I  L  Q  *  F  P  F  M  S  *  C  I  N  H  T  I  K  A  T  K  I  *  T  Y  H  I  N  A  N  T  Q  T  L  S  T  S  S  C  N  R  A  M  S  C  H  H  H  S  W  T  S  P  P  H  H  *  P  I  Q  S  K  F  L  Q  T  L  Q  Q  T  F  H  F  S  S  T  S  K  H  N  C  I  K  S  T  L  F  F  T  L  C  H  H  I  H  S  A  C  R  P  C  P  S  R  L  I  R  V  *  S  Q  W  N  P  P  P  F  R  *  I  I  K  E  F  R  H  N  R  W  F  I  Q  P  N  H  *  W  N  W  A  *  H  F  S  S  L  T  *  S  *  C  L  H  *  P  R  W  G  C  N  *  R  N  Q  N  S  N  S  F  R  V  F  T  H  F  S  N  E  I  S  I  Q  K  L  S  I  I  T  Q  S  C  N  C  E  N  F  S  I  W  G  *  W  G  C  G  V  H  R  *  S  L  *  K  S  S  N  P  S  S  *  S  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79130" stop="78822"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AATTILGHLLLTIDQSNPNSSKLFNKPSTSPVLVNTIASNPHSSSLFATTSTAHVAPAHRVSYASNLNGIHPLFDKSSRNFGTTGGSFNPITNGTGHNTFLP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79027" stop="78728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQLHQIHTLLHSLPPHPQRMSPLPIASHTRLISMESTPFSINHQGISAQQVVHSTQSLMELGITLFFLDLILMPPLTQMGLQLKEPKLEFFQGFHTFFE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78821" stop="78591"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNPNASTNPDGVATEGTKTRILSGFSHIFRMKSRSRSSASLPKAAIVRISPFGVNGGVGFIDKACEKAVIPVLEVNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="88430" PGL_stop="89154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88430" e_stop="89154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="88430" e_stop="89154" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88430" stop="89154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAACATCTCTTTCTCTCTCTGGTACCGATCTTTCTTCTAAGTAAAGCTCCATTTTCAGCAGAAATTCAAAATGGGTTTCATCATATCCTCTTCGTATTCTCATATATTCTGAGATTTCCTATTTCTAATTTCTGAGCTTATGAACACCATTTTTGCTTAGCTACACGAAGCCCCAAAACAAGAGAACACAAACCCAGAGGTTTTTAGGCGTTTTATTATGAGTTACACCTCATACCATGCTGTTTTGTTAAATGGGGTTTTGCGTTTTTTCTGTTTTGTTACTGTGGTTTCTCGATCTACTGCACTGGGTTACGACTTATTGTCTTTTTTACCAATGTGAACTACCAAGTTCGAATTTTTAAAGTATTTTATACTGTTCTGTGCTTGTGGGTACATGGATCTTGGTGGGTAATTTCTTTGGTGCTTGATTAGTAGAAAACATTGCTGGTAATTAGGGAGCTTGCTAAGTTATCTGATTTTCATGAGTTTTCTGTGAGCTTTGTAGCATATCGTGCAATGTTGATCGTATTTTTGTGATTCTGTTTGGATTTTTAGTGTTGATTTTGGTTTGGGACTTCTGTTGACTATTTGTTGAAATTGGCTTCTTCTTTAATGCGGGGGTTATATGTTTTTGGACTTCTTTGATTTTTAGTAATCATGGTGTTACTAAATTGGTTAGGTAACTGCTGAAGTTATTGAAGATTACCGTTTAATTGAGGAGTTG</gDNA_template>
            <first_frame> L  T  S  L  S  L  S  G  T  D  L  S  S  K  *  S  S  I  F  S  R  N  S  K  W  V  S  S  Y  P  L  R  I  L  I  Y  S  E  I  S  Y  F  *  F  L  S  L  *  T  P  F  L  L  S  Y  T  K  P  Q  N  K  R  T  Q  T  Q  R  F  L  G  V  L  L  *  V  T  P  H  T  M  L  F  C  *  M  G  F  C  V  F  S  V  L  L  L  W  F  L  D  L  L  H  W  V  T  T  Y  C  L  F  Y  Q  C  E  L  P  S  S  N  F  *  S  I  L  Y  C  S  V  L  V  G  T  W  I  L  V  G  N  F  F  G  A  *  L  V  E  N  I  A  G  N  *  G  A  C  *  V  I  *  F  S  *  V  F  C  E  L  C  S  I  S  C  N  V  D  R  I  F  V  I  L  F  G  F  L  V  L  I  L  V  W  D  F  C  *  L  F  V  E  I  G  F  F  F  N  A  G  V  I  C  F  W  T  S  L  I  F  S  N  H  G  V  T  K  L  V  R  *  L  L  K  L  L  K  I  T  V  *  L  R  S   </first_frame>
            <second_frame>  *  H  L  F  L  S  L  V  P  I  F  L  L  S  K  A  P  F  S  A  E  I  Q  N  G  F  H  H  I  L  F  V  F  S  Y  I  L  R  F  P  I  S  N  F  *  A  Y  E  H  H  F  C  L  A  T  R  S  P  K  T  R  E  H  K  P  R  G  F  *  A  F  Y  Y  E  L  H  L  I  P  C  C  F  V  K  W  G  F  A  F  F  L  F  C  Y  C  G  F  S  I  Y  C  T  G  L  R  L  I  V  F  F  T  N  V  N  Y  Q  V  R  I  F  K  V  F  Y  T  V  L  C  L  W  V  H  G  S  W  W  V  I  S  L  V  L  D  *  *  K  T  L  L  V  I  R  E  L  A  K  L  S  D  F  H  E  F  S  V  S  F  V  A  Y  R  A  M  L  I  V  F  L  *  F  C  L  D  F  *  C  *  F  W  F  G  T  S  V  D  Y  L  L  K  L  A  S  S  L  M  R  G  L  Y  V  F  G  L  L  *  F  L  V  I  M  V  L  L  N  W  L  G  N  C  *  S  Y  *  R  L  P  F  N  *  G  V  </second_frame>
            <third_frame>   N  I  S  F  S  L  W  Y  R  S  F  F  *  V  K  L  H  F  Q  Q  K  F  K  M  G  F  I  I  S  S  S  Y  S  H  I  F  *  D  F  L  F  L  I  S  E  L  M  N  T  I  F  A  *  L  H  E  A  P  K  Q  E  N  T  N  P  E  V  F  R  R  F  I  M  S  Y  T  S  Y  H  A  V  L  L  N  G  V  L  R  F  F  C  F  V  T  V  V  S  R  S  T  A  L  G  Y  D  L  L  S  F  L  P  M  *  T  T  K  F  E  F  L  K  Y  F  I  L  F  C  A  C  G  Y  M  D  L  G  G  *  F  L  W  C  L  I  S  R  K  H  C  W  *  L  G  S  L  L  S  Y  L  I  F  M  S  F  L  *  A  L  *  H  I  V  Q  C  *  S  Y  F  C  D  S  V  W  I  F  S  V  D  F  G  L  G  L  L  L  T  I  C  *  N  W  L  L  L  *  C  G  G  Y  M  F  L  D  F  F  D  F  *  *  S  W  C  Y  *  I  G  *  V  T  A  E  V  I  E  D  Y  R  L  I  E  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88638" stop="88862"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFYYELHLIPCCFVKWGFAFFLFCYCGFSIYCTGLRLIVFFTNVNYQVRIFKVFYTVLCLWVHGSWWVISLVLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="89165" PGL_stop="98051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89165" e_stop="89348"/>
            <exon e_start="89491" e_stop="89563"/>
            <exon e_start="89732" e_stop="89863"/>
            <exon e_start="89949" e_stop="90187"/>
            <exon e_start="90306" e_stop="90633"/>
            <exon e_start="91833" e_stop="91932"/>
            <exon e_start="92009" e_stop="92190"/>
            <exon e_start="92301" e_stop="92416"/>
            <exon e_start="92593" e_stop="92695"/>
            <exon e_start="93228" e_stop="93380"/>
            <exon e_start="93465" e_stop="93611"/>
            <exon e_start="93720" e_stop="93920"/>
            <exon e_start="94196" e_stop="94360"/>
            <exon e_start="94435" e_stop="94539"/>
            <exon e_start="94642" e_stop="94782"/>
            <exon e_start="94873" e_stop="95067"/>
            <exon e_start="95366" e_stop="95492"/>
            <exon e_start="95587" e_stop="95789"/>
            <exon e_start="95884" e_stop="96066"/>
            <exon e_start="96451" e_stop="96546"/>
            <exon e_start="96696" e_stop="96893"/>
            <exon e_start="97180" e_stop="97451"/>
            <exon e_start="97599" e_stop="98051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.973"/>
          <exon-intron don_prob="0.776" acc_prob="0.978" e_score="0.932"/>
          <exon-intron don_prob="0.827" acc_prob="0.892" e_score="0.947"/>
          <exon-intron don_prob="0.071" acc_prob="0.958" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="0.980"/>
          <exon-intron don_prob="0.912" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="0.993" acc_prob="0.945" e_score="0.991"/>
          <exon-intron don_prob="0.924" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.808" acc_prob="0.981" e_score="0.974"/>
          <exon-intron don_prob="0.828" acc_prob="0.922" e_score="0.993"/>
          <exon-intron don_prob="0.604" acc_prob="0.936" e_score="0.990"/>
          <exon-intron don_prob="0.700" acc_prob="0.938" e_score="0.982"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.966" acc_prob="0.996" e_score="0.964"/>
          <exon-intron don_prob="0.931" acc_prob="0.990" e_score="0.984"/>
          <exon-intron don_prob="0.938" acc_prob="0.808" e_score="0.990"/>
          <exon-intron don_prob="0.642" acc_prob="0.879" e_score="0.978"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="89165" e_stop="89348" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89349" i_stop="89490" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="89491" e_stop="89563" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.978">
            <gDNA_intron_boundary i_start="89564" i_stop="89731" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="89732" e_stop="89863" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.892">
            <gDNA_intron_boundary i_start="89864" i_stop="89948" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="89949" e_stop="90187" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.071" acc_prob="0.958">
            <gDNA_intron_boundary i_start="90188" i_stop="90305" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="90306" e_stop="90633" e_length="328"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="90634" i_stop="91832" i_length="1199"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="91833" e_stop="91932" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="91933" i_stop="92008" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="92009" e_stop="92190" e_length="182"/>
          </exon>
          <intron i_serial="7" don_prob="0.912" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92191" i_stop="92300" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="92301" e_stop="92416" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.945">
            <gDNA_intron_boundary i_start="92417" i_stop="92592" i_length="176"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="92593" e_stop="92695" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.924" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92696" i_stop="93227" i_length="532"/>
          </intron>
          <exon e_serial="10" e_score="0.974">
            <gDNA_exon_boundary e_start="93228" e_stop="93380" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="0.808" acc_prob="0.981">
            <gDNA_intron_boundary i_start="93381" i_stop="93464" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="0.993">
            <gDNA_exon_boundary e_start="93465" e_stop="93611" e_length="147"/>
          </exon>
          <intron i_serial="11" don_prob="0.828" acc_prob="0.922">
            <gDNA_intron_boundary i_start="93612" i_stop="93719" i_length="108"/>
          </intron>
          <exon e_serial="12" e_score="0.990">
            <gDNA_exon_boundary e_start="93720" e_stop="93920" e_length="201"/>
          </exon>
          <intron i_serial="12" don_prob="0.604" acc_prob="0.936">
            <gDNA_intron_boundary i_start="93921" i_stop="94195" i_length="275"/>
          </intron>
          <exon e_serial="13" e_score="0.982">
            <gDNA_exon_boundary e_start="94196" e_stop="94360" e_length="165"/>
          </exon>
          <intron i_serial="13" don_prob="0.700" acc_prob="0.938">
            <gDNA_intron_boundary i_start="94361" i_stop="94434" i_length="74"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="94435" e_stop="94539" e_length="105"/>
          </exon>
          <intron i_serial="14" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94540" i_stop="94641" i_length="102"/>
          </intron>
          <exon e_serial="15" e_score="0.993">
            <gDNA_exon_boundary e_start="94642" e_stop="94782" e_length="141"/>
          </exon>
          <intron i_serial="15" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94783" i_stop="94872" i_length="90"/>
          </intron>
          <exon e_serial="16" e_score="0.964">
            <gDNA_exon_boundary e_start="94873" e_stop="95067" e_length="195"/>
          </exon>
          <intron i_serial="16" don_prob="0.966" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95068" i_stop="95365" i_length="298"/>
          </intron>
          <exon e_serial="17" e_score="0.984">
            <gDNA_exon_boundary e_start="95366" e_stop="95492" e_length="127"/>
          </exon>
          <intron i_serial="17" don_prob="0.931" acc_prob="0.990">
            <gDNA_intron_boundary i_start="95493" i_stop="95586" i_length="94"/>
          </intron>
          <exon e_serial="18" e_score="0.990">
            <gDNA_exon_boundary e_start="95587" e_stop="95789" e_length="203"/>
          </exon>
          <intron i_serial="18" don_prob="0.938" acc_prob="0.808">
            <gDNA_intron_boundary i_start="95790" i_stop="95883" i_length="94"/>
          </intron>
          <exon e_serial="19" e_score="0.978">
            <gDNA_exon_boundary e_start="95884" e_stop="96066" e_length="183"/>
          </exon>
          <intron i_serial="19" don_prob="0.642" acc_prob="0.879">
            <gDNA_intron_boundary i_start="96067" i_stop="96450" i_length="384"/>
          </intron>
          <exon e_serial="20" e_score="0.979">
            <gDNA_exon_boundary e_start="96451" e_stop="96546" e_length="96"/>
          </exon>
          <intron i_serial="20" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="96547" i_stop="96695" i_length="149"/>
          </intron>
          <exon e_serial="21" e_score="0.995">
            <gDNA_exon_boundary e_start="96696" e_stop="96893" e_length="198"/>
          </exon>
          <intron i_serial="21" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96894" i_stop="97179" i_length="286"/>
          </intron>
          <exon e_serial="22" e_score="1.000">
            <gDNA_exon_boundary e_start="97180" e_stop="97451" e_length="272"/>
          </exon>
          <intron i_serial="22" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="97452" i_stop="97598" i_length="147"/>
          </intron>
          <exon e_serial="23" e_score="1.000">
            <gDNA_exon_boundary e_start="97599" e_stop="98051" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89165" stop="89348"/>
              <exon start="89491" stop="89563"/>
              <exon start="89732" stop="89863"/>
              <exon start="89949" stop="90187"/>
              <exon start="90306" stop="90633"/>
              <exon start="91833" stop="91932"/>
              <exon start="92009" stop="92190"/>
              <exon start="92301" stop="92416"/>
              <exon start="92593" stop="92695"/>
              <exon start="93228" stop="93380"/>
              <exon start="93465" stop="93611"/>
              <exon start="93720" stop="93920"/>
              <exon start="94196" stop="94360"/>
              <exon start="94435" stop="94539"/>
              <exon start="94642" stop="94782"/>
              <exon start="94873" stop="95067"/>
              <exon start="95366" stop="95492"/>
              <exon start="95587" stop="95789"/>
              <exon start="95884" stop="96066"/>
              <exon start="96451" stop="96546"/>
              <exon start="96696" stop="96893"/>
              <exon start="97180" stop="97451"/>
              <exon start="97599" stop="98016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95917" stop="96066"/>
              <exon start="96451" stop="96546"/>
              <exon start="96696" stop="96872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96484" stop="96546"/>
              <exon start="96696" stop="96893"/>
              <exon start="97180" stop="97451"/>
              <exon start="97599" stop="97801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96893"/>
              <exon start="97180" stop="97451"/>
              <exon start="97599" stop="98051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96860" stop="96893"/>
              <exon start="97180" stop="97451"/>
              <exon start="97599" stop="98051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96865" stop="96893"/>
              <exon start="97180" stop="97451"/>
              <exon start="97599" stop="97898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96866" stop="96893"/>
              <exon start="97180" stop="97451"/>
              <exon start="97599" stop="97883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97639" stop="98051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGAGCTGTATAGAGCGGAGATTATAATTTTGGAAAATGACTTCTGATATGCCACCAGTTAGTATGAGGTCAAGCAGGTCATCTTTTGGCTCAAGCAATGGATATGAAACACCTTCACACTATTCCTTTCCAACCTCAAATGGGGATGATTATGATAGTGATGGTTCTAATTTCGCTCCACC : CACTCCGAACACCCTCTCATCAGTCCTGTCACCTGAACTTGCTGGTGCAATACCATATATTGACAGATTCCAG : GTTGAAGGTTTCTTGAAGGCTATGCAAAAACAGATTCATTCTGCTAGCAAACGTGGGTTCTTCCTGAAAAAATCTGTTGGGCCGCAAGTTCGAGAAAAATTTACATTTGAGGATATGCTATGTTTTCAAAGG : GAACCCATTCCAACATCAATTTTGAAAATAAATGGTGATCTCATTAGCAGGGCAGTTAAATTATTTCAGTCTATTCTGAAGTATATGGGTATTGATTCCTATGATAGAGTGGCTCCAATTAGCTTTGATGAACGGATTGAACTCGTTGGCAAGCTATTTAAGCAGGCCCTGAAGCGATCTGAGCTTCGAGATGAAATGTTTGCACAAATTTCAAAACAAACAAGGAATAATCCAGAGAG : GCATTCTTTGATTAAAGCATGGGAGCTGATGTACTTGTGCGCATCTTGCATGCCTCCGAGCAAGGAAATTGGTGGATACTTGTCAGAATATATTCATACTGTAGCACATGGGACTAATACTGATTCCGAAGTTCAAGTTTTTGCTATAAATACTCTAAATGCACTGAAACGTTCGATTAAGGCTGGACCTAGGCACACGATTCCTGGTCGTGAGGAGATCGAAGCTCATTTAACTGGGAAAAAGCTTACTACAATAGTGTTTTTCTTGGATGAAACCTTCGAGGAAATTACCTATGACATGGCAACCACCGTTGCTGATGCTATTGAG : GAGGTTGCAGGGATAATCAAATTGTCTGCTCATGCTAGCTTCAGTTTGTTCGAGTGCCGTAAGGTTGTTACTGGTTCTAAATCTCCAGACCTTGGAAATG : AGGAGTATATCGGTTTGGATGAAAATAAGTATATTGGAGATCTTCTGGCGGACTTTAAGGCATCGAAAGATAGAAGTAAAGGGGAGATTTTGCATTGTAAATTGATTTTCAAGAAAAAGCTGTTTCGGGAGTCAGATGAAGCTGTTACAGAGCCAATGTTCGTGCAATTATCGTATGTTCAA : TTACAACATGATTACATAATGGGCAATTATCCTGTTGGCAAGGAAGATGCTGCACAGATGTCTGCTTTGCAGATCCTGGTTGACATTGGATATGTGGATGGCCCTGAATCTTGCAC : TGACTGGACATCACTGCTGGAGCGATTTTTACCCAGACAAATTGCAATGACACGGGCAAAGAGGGAATGGGAATTGGACATCCTTTCTCGTTACAAAGTGATG : GAAAATCTGACAAAGGATGATGCCAAACAACAATTTTTGCGGATCCTGAGGACGCTTCCTTATGGGAATTCAGTTTTCTTTGCTGTTCGAAAGATTGATGATCCTATTGGACTTTTACCTGGGAAAATTGTATTGGGCATTAATAAGCGTGGG : GTTCATTTTTTCCGTCCAGTTCCAAAGGAATATTTGCATTCAGCTGAGCTTAGGGACATAATGCAATTTGGTAGCAGCAACACTGCTGTGTTCTTTAAGATGAGAGTTGCTGGGGTCTTGCATATATTTCAGTTTGAAACGAAACAG : GGAGAAGAAATTTGTGTTGCTCTGCAAACACATATTAATGATGTGATGTTACGCCGTTACTCTAAAGCCCGCTCTTCGGCTAATGGTTCTGTTAACGGAGATGTTCCAAATAATCTCAAAACTACAAACACTGATATTAATGAAAGACGCATTCAGGATTTGTCTAGAGCCCTTGAAGAATCTCAGAAGAAAGTCAATGAT : TTGGTGGAAGATTTACATGAAAGGCAAAAACAAGAATCAGAGATGCAAGAAGAATTGGACAGCTTAAAAGATAACTTGAGTTCTGAGAAGCAAAATTTAGCAGCGGCTGCTTATGATTGTGATAAATTCAGATCTTTATGCGATGAAAAAGATGCTGAGCTTCAG : GCTGCCCTAACGGAGAAGCGAAACTTGGAAATGCGTCTTTCAAAGTTAAGTTCTCAAGGTTTGGAGAAAAATATTACGAAAGAGTTGGTTGAAGCAAATAACCAG : GTCTTACAGAAGATCCAAGAAGAGTTGAAAGCTCGTACTATGGATTTGCGTACTGCAGAAGAAACAAAGAGGAGGCTTTTGAGTGAAAAAGCATCACTTGAGGAAAAAGTCATAGGACTAGAAAAGAAGAAATCAAATGAG : ATGGAAAGCCTTCAGAAAGATTTTGAAAAAGAATGCAAGGGGCTGAAACTCCAAGTCTCTGAACTTCAAAGGAAACTAGAAGAGGCCAAACATGACTTGATTGGTGCACAGTCTGGTCTTGAAGCTAAAGACAAGGAACTAGAAATGCTGCAGAATAATTTGAAGGAGCTTGAGGAGCTGAGAGAAATGAAAGAG : GATATTGATCGAAAAAATGCACAAACTGCTGCCATCTTGAAAATGCAAGGGGCTCAATTGGCAGAAATGGAAGCACTTTACCGGGAAGAACAAGTTCTAAGGAAAAAGTATTTCAACATAATAGAAG : ATATGAAAGGCAAGATCAGAGTCTACTGTAGATTAAGACCACTTTGTGAAAAGGAAATTATAGCAAAGGAAAGAAATGCCATCAGAAGTGTTGATGAGTTTACTGTTGAACATTTATGGAAAGATGATAAAGCAAAACAGCACATGTATGATCGTGTCTTTGATGGAAATGCCACCCAAGATGATGTGTTCGAAGATACTAAG : TACTTGGTTCAATCAGCTGTTGATGGATATAATGTTTGCATATTTGCATATGGACAGACTGGATCTGGCAAGACATTCACAATCTATGGAGCTGATAGTAATCCAGGACTGACACCAAGAGCTATGTCCGAACTCTTTCGAATTATGAAAAAAGACAGTAATAAGTTCTCTTTCTCTTTAAAG : GCGTACATGGTAGAGTTGTATCAGGATACGTTGGTGGATCTTTTATTGCCAAAGCAAGCAAAGCGCTTGAAATTGGATATAAAAAAGGACGCAAAG : GGCATGGTTTCTGTGGAGAATGTGACAGTGGTGTCTATTTCAACGTACGAGGAGCTTAAGACAATAATCCAAAGAGGATCTGAACAGCGTCATACGACTGGAACCTTGATGAATGAGCAGAGTTCAAGATCTCATCTTATTGTTTCAGTTATTATCGAGAGTACCAATCTTCAAACTCAGGCGATTGCCAGAGGGAAG : CTGAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTTAAAAAGTCTGGCTCAGCTGGCAATCAATTAAAAGAAGCTCAAAGCATTAACAAGTCCCTGTCAGCACTTGGTGATGTTATAAGTGCATTATCTTCAGGAAATCAACACATTCCTTATCGAAATCACAAGCTAACCATGTTGATGAGCGACTCGTTAGGTGGAAATGCTAAAACCCTGATGTTTGTAAACATCTCTCCAGCAGAATCAAACTTGGATGAGACTCACAATTCCTTGAC : GTATGCATCAAGAGTTCGTTCTATTGTAAATGATCCCAGCAAAAATGTTTCCTCTAAGGAAGTCGCTCGTTTAAAGAAGCTGGTCTCATATTGGAAGGAACAAGCTGGTAGAAAAGGAGATGATGAGGAATTGGAGGAAATCCAAGACGAACGACCATCTAAAGACAAGAATGATGGTCGTTATTCCATGTAAAACCTCTCGAATTGAACACGCGGAACGAAAATCAAGTTATCTTGTTTAGCTGCCTCAAAAGTGATGAGGAAAATAGTGAACAATTGAACAGCTTGTTCAAGCTGTGTTACTAAGTGGTTTGAGATTTTCCTTCCCAGAATTTTGTTGTCTGATTGGGTGGCTTAAAGAAGTTAGTTTAGGGAGTCCTCAATCCTCATGTTGTATAGAGTTATATGTGTATATTATATCAATCAATGGTTAACTACATTCTTTCTCCCCAA</gDNA_template>
            <first_frame> L  R  A  V  *  S  G  D  Y  N  F  G  K  *  L  L  I  C  H  Q  L  V  *  G  Q  A  G  H  L  L  A  Q  A  M  D  M  K  H  L  H  T  I  P  F  Q  P  Q  M  G  M  I  M  I  V  M  V  L  I  S  L  H   : P  L  R  T  P  S  H  Q  S  C  H  L  N  L  L  V  Q  Y  H  I  L  T  D  S  R :   L  K  V  S  *  R  L  C  K  N  R  F  I  L  L  A  N  V  G  S  S  *  K  N  L  L  G  R  K  F  E  K  N  L  H  L  R  I  C  Y  V  F  K  G :   N  P  F  Q  H  Q  F  *  K  *  M  V  I  S  L  A  G  Q  L  N  Y  F  S  L  F  *  S  I  W  V  L  I  P  M  I  E  W  L  Q  L  A  L  M  N  G  L  N  S  L  A  S  Y  L  S  R  P  *  S  D  L  S  F  E  M  K  C  L  H  K  F  Q  N  K  Q  G  I  I  Q  R   : G  I  L  *  L  K  H  G  S  *  C  T  C  A  H  L  A  C  L  R  A  R  K  L  V  D  T  C  Q  N  I  F  I  L  *  H  M  G  L  I  L  I  P  K  F  K  F  L  L  *  I  L  *  M  H  *  N  V  R  L  R  L  D  L  G  T  R  F  L  V  V  R  R  S  K  L  I  *  L  G  K  S  L  L  Q  *  C  F  S  W  M  K  P  S  R  K  L  P  M  T  W  Q  P  P  L  L  M  L  L  R :   R  L  Q  G  *  S  N  C  L  L  M  L  A  S  V  C  S  S  A  V  R  L  L  L  V  L  N  L  Q  T  L  E  M  :  R  S  I  S  V  W  M  K  I  S  I  L  E  I  F  W  R  T  L  R  H  R  K  I  E  V  K  G  R  F  C  I  V  N  *  F  S  R  K  S  C  F  G  S  Q  M  K  L  L  Q  S  Q  C  S  C  N  Y  R  M  F  N :   Y  N  M  I  T  *  W  A  I  I  L  L  A  R  K  M  L  H  R  C  L  L  C  R  S  W  L  T  L  D  M  W  M  A  L  N  L  A   : L  T  G  H  H  C  W  S  D  F  Y  P  D  K  L  Q  *  H  G  Q  R  G  N  G  N  W  T  S  F  L  V  T  K  *  W :   K  I  *  Q  R  M  M  P  N  N  N  F  C  G  S  *  G  R  F  L  M  G  I  Q  F  S  L  L  F  E  R  L  M  I  L  L  D  F  Y  L  G  K  L  Y  W  A  L  I  S  V  G :   F  I  F  S  V  Q  F  Q  R  N  I  C  I  Q  L  S  L  G  T  *  C  N  L  V  A  A  T  L  L  C  S  L  R  *  E  L  L  G  S  C  I  Y  F  S  L  K  R  N  R :   E  K  K  F  V  L  L  C  K  H  I  L  M  M  *  C  Y  A  V  T  L  K  P  A  L  R  L  M  V  L  L  T  E  M  F  Q  I  I  S  K  L  Q  T  L  I  L  M  K  D  A  F  R  I  C  L  E  P  L  K  N  L  R  R  K  S  M  I :   W  W  K  I  Y  M  K  G  K  N  K  N  Q  R  C  K  K  N  W  T  A  *  K  I  T  *  V  L  R  S  K  I  *  Q  R  L  L  M  I  V  I  N  S  D  L  Y  A  M  K  K  M  L  S  F  R :   L  P  *  R  R  S  E  T  W  K  C  V  F  Q  S  *  V  L  K  V  W  R  K  I  L  R  K  S  W  L  K  Q  I  T  R :   S  Y  R  R  S  K  K  S  *  K  L  V  L  W  I  C  V  L  Q  K  K  Q  R  G  G  F  *  V  K  K  H  H  L  R  K  K  S  *  D  *  K  R  R  N  Q  M  R :   W  K  A  F  R  K  I  L  K  K  N  A  R  G  *  N  S  K  S  L  N  F  K  G  N  *  K  R  P  N  M  T  *  L  V  H  S  L  V  L  K  L  K  T  R  N  *  K  C  C  R  I  I  *  R  S  L  R  S  *  E  K  *  K  R :   I  L  I  E  K  M  H  K  L  L  P  S  *  K  C  K  G  L  N  W  Q  K  W  K  H  F  T  G  K  N  K  F  *  G  K  S  I  S  T  *  *  K  :  I  *  K  A  R  S  E  S  T  V  D  *  D  H  F  V  K  R  K  L  *  Q  R  K  E  M  P  S  E  V  L  M  S  L  L  L  N  I  Y  G  K  M  I  K  Q  N  S  T  C  M  I  V  S  L  M  E  M  P  P  K  M  M  C  S  K  I  L  S :   T  W  F  N  Q  L  L  M  D  I  M  F  A  Y  L  H  M  D  R  L  D  L  A  R  H  S  Q  S  M  E  L  I  V  I  Q  D  *  H  Q  E  L  C  P  N  S  F  E  L  *  K  K  T  V  I  S  S  L  S  L  *  R :   R  T  W  *  S  C  I  R  I  R  W  W  I  F  Y  C  Q  S  K  Q  S  A  *  N  W  I  *  K  R  T  Q  R :   A  W  F  L  W  R  M  *  Q  W  C  L  F  Q  R  T  R  S  L  R  Q  *  S  K  E  D  L  N  S  V  I  R  L  E  P  *  *  M  S  R  V  Q  D  L  I  L  L  F  Q  L  L  S  R  V  P  I  F  K  L  R  R  L  P  E  G  S :   *  V  L  W  I  L  L  A  Q  K  E  L  K  S  L  A  Q  L  A  I  N  *  K  K  L  K  A  L  T  S  P  C  Q  H  L  V  M  L  *  V  H  Y  L  Q  E  I  N  T  F  L  I  E  I  T  S  *  P  C  *  *  A  T  R  *  V  E  M  L  K  P  *  C  L  *  T  S  L  Q  Q  N  Q  T  W  M  R  L  T  I  P  *   : R  M  H  Q  E  F  V  L  L  *  M  I  P  A  K  M  F  P  L  R  K  S  L  V  *  R  S  W  S  H  I  G  R  N  K  L  V  E  K  E  M  M  R  N  W  R  K  S  K  T  N  D  H  L  K  T  R  M  M  V  V  I  P  C  K  T  S  R  I  E  H  A  E  R  K  S  S  Y  L  V  *  L  P  Q  K  *  *  G  K  *  *  T  I  E  Q  L  V  Q  A  V  L  L  S  G  L  R  F  S  F  P  E  F  C  C  L  I  G  W  L  K  E  V  S  L  G  S  P  Q  S  S  C  C  I  E  L  Y  V  Y  I  I  S  I  N  G  *  L  H  S  F  S  P  </first_frame>
            <second_frame>  *  E  L  Y  R  A  E  I  I  I  L  E  N  D  F  *  Y  A  T  S  *  Y  E  V  K  Q  V  I  F  W  L  K  Q  W  I  *  N  T  F  T  L  F  L  S  N  L  K  W  G  *  L  *  *  *  W  F  *  F  R  S  T  :  H  S  E  H  P  L  I  S  P  V  T  *  T  C  W  C  N  T  I  Y  *  Q  I  P   : G  *  R  F  L  E  G  Y  A  K  T  D  S  F  C  *  Q  T  W  V  L  P  E  K  I  C  W  A  A  S  S  R  K  I  Y  I  *  G  Y  A  M  F  S  K   : G  T  H  S  N  I  N  F  E  N  K  W  *  S  H  *  Q  G  S  *  I  I  S  V  Y  S  E  V  Y  G  Y  *  F  L  *  *  S  G  S  N  *  L  *  *  T  D  *  T  R  W  Q  A  I  *  A  G  P  E  A  I  *  A  S  R  *  N  V  C  T  N  F  K  T  N  K  E  *  S  R  E  :  A  F  F  D  *  S  M  G  A  D  V  L  V  R  I  L  H  A  S  E  Q  G  N  W  W  I  L  V  R  I  Y  S  Y  C  S  T  W  D  *  Y  *  F  R  S  S  S  F  C  Y  K  Y  S  K  C  T  E  T  F  D  *  G  W  T  *  A  H  D  S  W  S  *  G  D  R  S  S  F  N  W  E  K  A  Y  Y  N  S  V  F  L  G  *  N  L  R  G  N  Y  L  *  H  G  N  H  R  C  *  C  Y  *   : G  G  C  R  D  N  Q  I  V  C  S  C  *  L  Q  F  V  R  V  P  *  G  C  Y  W  F  *  I  S  R  P  W  K  * :   G  V  Y  R  F  G  *  K  *  V  Y  W  R  S  S  G  G  L  *  G  I  E  R  *  K  *  R  G  D  F  A  L  *  I  D  F  Q  E  K  A  V  S  G  V  R  *  S  C  Y  R  A  N  V  R  A  I  I  V  C  S   : I  T  T  *  L  H  N  G  Q  L  S  C  W  Q  G  R  C  C  T  D  V  C  F  A  D  P  G  *  H  W  I  C  G  W  P  *  I  L  H  :  *  L  D  I  T  A  G  A  I  F  T  Q  T  N  C  N  D  T  G  K  E  G  M  G  I  G  H  P  F  S  L  Q  S  D   : G  K  S  D  K  G  *  C  Q  T  T  I  F  A  D  P  E  D  A  S  L  W  E  F  S  F  L  C  C  S  K  D  *  *  S  Y  W  T  F  T  W  E  N  C  I  G  H  *  *  A  W   : G  S  F  F  P  S  S  S  K  G  I  F  A  F  S  *  A  *  G  H  N  A  I  W  *  Q  Q  H  C  C  V  L  *  D  E  S  C  W  G  L  A  Y  I  S  V  *  N  E  T   : G  R  R  N  L  C  C  S  A  N  T  Y  *  *  C  D  V  T  P  L  L  *  S  P  L  F  G  *  W  F  C  *  R  R  C  S  K  *  S  Q  N  Y  K  H  *  Y  *  *  K  T  H  S  G  F  V  *  S  P  *  R  I  S  E  E  S  Q  *   : F  G  G  R  F  T  *  K  A  K  T  R  I  R  D  A  R  R  I  G  Q  L  K  R  *  L  E  F  *  E  A  K  F  S  S  G  C  L  *  L  *  *  I  Q  I  F  M  R  *  K  R  C  *  A  S   : G  C  P  N  G  E  A  K  L  G  N  A  S  F  K  V  K  F  S  R  F  G  E  K  Y  Y  E  R  V  G  *  S  K  *  P   : G  L  T  E  D  P  R  R  V  E  S  S  Y  Y  G  F  A  Y  C  R  R  N  K  E  E  A  F  E  *  K  S  I  T  *  G  K  S  H  R  T  R  K  E  E  I  K  *   : D  G  K  P  S  E  R  F  *  K  R  M  Q  G  A  E  T  P  S  L  *  T  S  K  E  T  R  R  G  Q  T  *  L  D  W  C  T  V  W  S  *  S  *  R  Q  G  T  R  N  A  A  E  *  F  E  G  A  *  G  A  E  R  N  E  R   : G  Y  *  S  K  K  C  T  N  C  C  H  L  E  N  A  R  G  S  I  G  R  N  G  S  T  L  P  G  R  T  S  S  K  E  K  V  F  Q  H  N  R  R :   Y  E  R  Q  D  Q  S  L  L  *  I  K  T  T  L  *  K  G  N  Y  S  K  G  K  K  C  H  Q  K  C  *  *  V  Y  C  *  T  F  M  E  R  *  *  S  K  T  A  H  V  *  S  C  L  *  W  K  C  H  P  R  *  C  V  R  R  Y  *   : V  L  G  S  I  S  C  *  W  I  *  C  L  H  I  C  I  W  T  D  W  I  W  Q  D  I  H  N  L  W  S  *  *  *  S  R  T  D  T  K  S  Y  V  R  T  L  S  N  Y  E  K  R  Q  *  *  V  L  F  L  F  K   : G  V  H  G  R  V  V  S  G  Y  V  G  G  S  F  I  A  K  A  S  K  A  L  E  I  G  Y  K  K  G  R  K   : G  H  G  F  C  G  E  C  D  S  G  V  Y  F  N  V  R  G  A  *  D  N  N  P  K  R  I  *  T  A  S  Y  D  W  N  L  D  E  *  A  E  F  K  I  S  S  Y  C  F  S  Y  Y  R  E  Y  Q  S  S  N  S  G  D  C  Q  R  E   : A  E  F  C  G  S  C  W  L  R  K  S  *  K  V  W  L  S  W  Q  S  I  K  R  S  S  K  H  *  Q  V  P  V  S  T  W  *  C  Y  K  C  I  I  F  R  K  S  T  H  S  L  S  K  S  Q  A  N  H  V  D  E  R  L  V  R  W  K  C  *  N  P  D  V  C  K  H  L  S  S  R  I  K  L  G  *  D  S  Q  F  L  D  :  V  C  I  K  S  S  F  Y  C  K  *  S  Q  Q  K  C  F  L  *  G  S  R  S  F  K  E  A  G  L  I  L  E  G  T  S  W  *  K  R  R  *  *  G  I  G  G  N  P  R  R  T  T  I  *  R  Q  E  *  W  S  L  F  H  V  K  P  L  E  L  N  T  R  N  E  N  Q  V  I  L  F  S  C  L  K  S  D  E  E  N  S  E  Q  L  N  S  L  F  K  L  C  Y  *  V  V  *  D  F  P  S  Q  N  F  V  V  *  L  G  G  L  K  K  L  V  *  G  V  L  N  P  H  V  V  *  S  Y  M  C  I  L  Y  Q  S  M  V  N  Y  I  L  S  P  Q </second_frame>
            <third_frame>   E  S  C  I  E  R  R  L  *  F  W  K  M  T  S  D  M  P  P  V  S  M  R  S  S  R  S  S  F  G  S  S  N  G  Y  E  T  P  S  H  Y  S  F  P  T  S  N  G  D  D  Y  D  S  D  G  S  N  F  A  P  P :   T  P  N  T  L  S  S  V  L  S  P  E  L  A  G  A  I  P  Y  I  D  R  F  Q  :  V  E  G  F  L  K  A  M  Q  K  Q  I  H  S  A  S  K  R  G  F  F  L  K  K  S  V  G  P  Q  V  R  E  K  F  T  F  E  D  M  L  C  F  Q  R  :  E  P  I  P  T  S  I  L  K  I  N  G  D  L  I  S  R  A  V  K  L  F  Q  S  I  L  K  Y  M  G  I  D  S  Y  D  R  V  A  P  I  S  F  D  E  R  I  E  L  V  G  K  L  F  K  Q  A  L  K  R  S  E  L  R  D  E  M  F  A  Q  I  S  K  Q  T  R  N  N  P  E  R :   H  S  L  I  K  A  W  E  L  M  Y  L  C  A  S  C  M  P  P  S  K  E  I  G  G  Y  L  S  E  Y  I  H  T  V  A  H  G  T  N  T  D  S  E  V  Q  V  F  A  I  N  T  L  N  A  L  K  R  S  I  K  A  G  P  R  H  T  I  P  G  R  E  E  I  E  A  H  L  T  G  K  K  L  T  T  I  V  F  F  L  D  E  T  F  E  E  I  T  Y  D  M  A  T  T  V  A  D  A  I  E  :  E  V  A  G  I  I  K  L  S  A  H  A  S  F  S  L  F  E  C  R  K  V  V  T  G  S  K  S  P  D  L  G  N   : E  E  Y  I  G  L  D  E  N  K  Y  I  G  D  L  L  A  D  F  K  A  S  K  D  R  S  K  G  E  I  L  H  C  K  L  I  F  K  K  K  L  F  R  E  S  D  E  A  V  T  E  P  M  F  V  Q  L  S  Y  V  Q  :  L  Q  H  D  Y  I  M  G  N  Y  P  V  G  K  E  D  A  A  Q  M  S  A  L  Q  I  L  V  D  I  G  Y  V  D  G  P  E  S  C  T :   D  W  T  S  L  L  E  R  F  L  P  R  Q  I  A  M  T  R  A  K  R  E  W  E  L  D  I  L  S  R  Y  K  V  M  :  E  N  L  T  K  D  D  A  K  Q  Q  F  L  R  I  L  R  T  L  P  Y  G  N  S  V  F  F  A  V  R  K  I  D  D  P  I  G  L  L  P  G  K  I  V  L  G  I  N  K  R  G  :  V  H  F  F  R  P  V  P  K  E  Y  L  H  S  A  E  L  R  D  I  M  Q  F  G  S  S  N  T  A  V  F  F  K  M  R  V  A  G  V  L  H  I  F  Q  F  E  T  K  Q  :  G  E  E  I  C  V  A  L  Q  T  H  I  N  D  V  M  L  R  R  Y  S  K  A  R  S  S  A  N  G  S  V  N  G  D  V  P  N  N  L  K  T  T  N  T  D  I  N  E  R  R  I  Q  D  L  S  R  A  L  E  E  S  Q  K  K  V  N  D  :  L  V  E  D  L  H  E  R  Q  K  Q  E  S  E  M  Q  E  E  L  D  S  L  K  D  N  L  S  S  E  K  Q  N  L  A  A  A  A  Y  D  C  D  K  F  R  S  L  C  D  E  K  D  A  E  L  Q  :  A  A  L  T  E  K  R  N  L  E  M  R  L  S  K  L  S  S  Q  G  L  E  K  N  I  T  K  E  L  V  E  A  N  N  Q  :  V  L  Q  K  I  Q  E  E  L  K  A  R  T  M  D  L  R  T  A  E  E  T  K  R  R  L  L  S  E  K  A  S  L  E  E  K  V  I  G  L  E  K  K  K  S  N  E  :  M  E  S  L  Q  K  D  F  E  K  E  C  K  G  L  K  L  Q  V  S  E  L  Q  R  K  L  E  E  A  K  H  D  L  I  G  A  Q  S  G  L  E  A  K  D  K  E  L  E  M  L  Q  N  N  L  K  E  L  E  E  L  R  E  M  K  E  :  D  I  D  R  K  N  A  Q  T  A  A  I  L  K  M  Q  G  A  Q  L  A  E  M  E  A  L  Y  R  E  E  Q  V  L  R  K  K  Y  F  N  I  I  E   : D  M  K  G  K  I  R  V  Y  C  R  L  R  P  L  C  E  K  E  I  I  A  K  E  R  N  A  I  R  S  V  D  E  F  T  V  E  H  L  W  K  D  D  K  A  K  Q  H  M  Y  D  R  V  F  D  G  N  A  T  Q  D  D  V  F  E  D  T  K  :  Y  L  V  Q  S  A  V  D  G  Y  N  V  C  I  F  A  Y  G  Q  T  G  S  G  K  T  F  T  I  Y  G  A  D  S  N  P  G  L  T  P  R  A  M  S  E  L  F  R  I  M  K  K  D  S  N  K  F  S  F  S  L  K  :  A  Y  M  V  E  L  Y  Q  D  T  L  V  D  L  L  L  P  K  Q  A  K  R  L  K  L  D  I  K  K  D  A  K  :  G  M  V  S  V  E  N  V  T  V  V  S  I  S  T  Y  E  E  L  K  T  I  I  Q  R  G  S  E  Q  R  H  T  T  G  T  L  M  N  E  Q  S  S  R  S  H  L  I  V  S  V  I  I  E  S  T  N  L  Q  T  Q  A  I  A  R  G  K  :  L  S  F  V  D  L  A  G  S  E  R  V  K  K  S  G  S  A  G  N  Q  L  K  E  A  Q  S  I  N  K  S  L  S  A  L  G  D  V  I  S  A  L  S  S  G  N  Q  H  I  P  Y  R  N  H  K  L  T  M  L  M  S  D  S  L  G  G  N  A  K  T  L  M  F  V  N  I  S  P  A  E  S  N  L  D  E  T  H  N  S  L  T :   Y  A  S  R  V  R  S  I  V  N  D  P  S  K  N  V  S  S  K  E  V  A  R  L  K  K  L  V  S  Y  W  K  E  Q  A  G  R  K  G  D  D  E  E  L  E  E  I  Q  D  E  R  P  S  K  D  K  N  D  G  R  Y  S  M  *  N  L  S  N  *  T  R  G  T  K  I  K  L  S  C  L  A  A  S  K  V  M  R  K  I  V  N  N  *  T  A  C  S  S  C  V  T  K  W  F  E  I  F  L  P  R  I  L  L  S  D  W  V  A  *  R  S  *  F  R  E  S  S  I  L  M  L  Y  R  V  I  C  V  Y  Y  I  N  Q  W  L  T  T  F  F  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89194" stop="89348"/>
                    <exon start="89491" stop="89563"/>
                    <exon start="89732" stop="89863"/>
                    <exon start="89949" stop="90187"/>
                    <exon start="90306" stop="90633"/>
                    <exon start="91833" stop="91932"/>
                    <exon start="92009" stop="92190"/>
                    <exon start="92301" stop="92416"/>
                    <exon start="92593" stop="92695"/>
                    <exon start="93228" stop="93380"/>
                    <exon start="93465" stop="93611"/>
                    <exon start="93720" stop="93920"/>
                    <exon start="94196" stop="94360"/>
                    <exon start="94435" stop="94539"/>
                    <exon start="94642" stop="94782"/>
                    <exon start="94873" stop="95067"/>
                    <exon start="95366" stop="95492"/>
                    <exon start="95587" stop="95789"/>
                    <exon start="95884" stop="96066"/>
                    <exon start="96451" stop="96546"/>
                    <exon start="96696" stop="96893"/>
                    <exon start="97180" stop="97451"/>
                    <exon start="97599" stop="97791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3804</number_coding_nucleotides>
                  <number_encoded_amino_acids>1268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWKMTSDMPPVSMRSSRSSFGSSNGYETPSHYSFPTSNGDDYDSDGSNFAPPTPNTLSSVLSPELAGAIPYIDRFQVEGFLKAMQKQIHSASKRGFFLKKSVGPQVREKFTFEDMLCFQREPIPTSILKINGDLISRAVKLFQSILKYMGIDSYDRVAPISFDERIELVGKLFKQALKRSELRDEMFAQISKQTRNNPERHSLIKAWELMYLCASCMPPSKEIGGYLSEYIHTVAHGTNTDSEVQVFAINTLNALKRSIKAGPRHTIPGREEIEAHLTGKKLTTIVFFLDETFEEITYDMATTVADAIEEVAGIIKLSAHASFSLFECRKVVTGSKSPDLGNEEYIGLDENKYIGDLLADFKASKDRSKGEILHCKLIFKKKLFRESDEAVTEPMFVQLSYVQLQHDYIMGNYPVGKEDAAQMSALQILVDIGYVDGPESCTDWTSLLERFLPRQIAMTRAKREWELDILSRYKVMENLTKDDAKQQFLRILRTLPYGNSVFFAVRKIDDPIGLLPGKIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSSANGSVNGDVPNNLKTTNTDINERRIQDLSRALEESQKKVNDLVEDLHERQKQESEMQEELDSLKDNLSSEKQNLAAAAYDCDKFRSLCDEKDAELQAALTEKRNLEMRLSKLSSQGLEKNITKELVEANNQVLQKIQEELKARTMDLRTAEETKRRLLSEKASLEEKVIGLEKKKSNEMESLQKDFEKECKGLKLQVSELQRKLEEAKHDLIGAQSGLEAKDKELEMLQNNLKELEELREMKEDIDRKNAQTAAILKMQGAQLAEMEALYREEQVLRKKYFNIIEDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDAKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDERPSKDKNDGRYSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="102260" PGL_stop="104626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102260" e_stop="102664"/>
            <exon e_start="103581" e_stop="103896"/>
            <exon e_start="104074" e_stop="104626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="0.980"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="0.994"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="102260" e_stop="102664" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="102665" i_stop="103580" i_length="916"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="103581" e_stop="103896" e_length="316"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="103897" i_stop="104073" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="104074" e_stop="104626" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102260" stop="102664"/>
              <exon start="103581" stop="103896"/>
              <exon start="104074" stop="104099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102319" stop="102664"/>
              <exon start="103581" stop="103883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102319" stop="102664"/>
              <exon start="103581" stop="103786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103644" stop="103896"/>
              <exon start="104074" stop="104595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263683" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103761" stop="103896"/>
              <exon start="104074" stop="104626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103761" stop="103896"/>
              <exon start="104074" stop="104626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103761" stop="103896"/>
              <exon start="104074" stop="104571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104173" stop="104626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAAATAAACTCCAAGTTCCAAAAAAAAAAATCTAAGGTAAGAGCAAGAGCAAAAACACAAAATGGAGAGTGAAAATTCAGTGCCAGTAATTGATTTAGAGGATTTTCCAAGGCAATTATCTAAGTTAATTTGGGCATGTGAAGAATGGGGTTGTTTCAGAATTTTGAACCATGATAAAATCCTTCCAGTTTCACTCATGGCAGAGATGAAGGAAGTGGTGAGGGCATTGTTTGATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTAATTGCAGGATCTGGGTATATGGCTCCTAGTGAAAGAAACCCTCTTTATGAAGCTTTGGGTCTCTATGATATGTCTTGTGTTGAAGATGTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACATCAAAG : AGAGACAATCAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGATTGGGACTGCGAAATGTTTCGTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACCACTTCACCCCAGAAGCTGTAGGTTCCTATGGGGTTCAGATACACACAGACTCAGGATTCCTTACTATTCTACAGGATGATGAATGCGTTGGTGGTCTCGAGGTCATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCCTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG : GTATGGAGCAATGGAAGACTATACTCCGCCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGAGTGTCTATTGCTTCATTCCTCTTGGGACCAAGGGACACGGCAGTGGAACCACCACCTGAGCTGGTAAATGCTGAACACCCCCGTATCTATGTTCCTTTCACTTTCAATGATTATAGGAAGCTCCGTTTATCGACAAAGTTGCAGGCAGGGGAAGCTCTTGATCTTATGCGAACTAACCTGTAAAACTTTGGAAAGCATCTCAGGTCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGATAATATATCTTAGTGGGATTTCATCATCTATATATCGTCATATGTGTGGTGGAGCAATAAAATCATATGTGCACACATCGAATTTTTAGATGGAAATTATTTGGTTCTTGATCCCGAACCAATTGTGATAGGAGAACCTTGTTGGCTTGATGCATACATGTTAAATAAACTCATCTGATACCAAATTTTATTTGAGAGATTCGTTCTCATAATCAATGGTCTAGCTATTATTGGAG</gDNA_template>
            <first_frame> Q  Q  I  N  S  K  F  Q  K  K  K  S  K  V  R  A  R  A  K  T  Q  N  G  E  *  K  F  S  A  S  N  *  F  R  G  F  S  K  A  I  I  *  V  N  L  G  M  *  R  M  G  L  F  Q  N  F  E  P  *  *  N  P  S  S  F  T  H  G  R  D  E  G  S  G  E  G  I  V  *  S  S  N  *  N  Q  E  T  Q  Q  R  C  N  C  R  I  W  V  Y  G  S  *  *  K  K  P  S  L  *  S  F  G  S  L  *  Y  V  L  C  *  R  C  R  *  V  L  Y  S  V  G  C  I  S  T  S  K  :  R  D  N  Q  E  V  C  C  S  N  *  W  T  N  D  G  H  S  A  K  D  E  *  R  I  G  T  A  K  C  F  V  *  G  L  A  L  S  V  *  D  *  Q  V  P  L  H  P  R  S  C  R  F  L  W  G  S  D  T  H  R  L  R  I  P  Y  Y  S  T  G  *  *  M  R  W  W  S  R  G  H  E  E  V  W  *  I  C  S  S  *  S  L  A  K  H  P  P  C  E  S  W  R  H  R  H   : G  M  E  Q  W  K  T  I  L  R  Q  A  *  S  D  M  Q  G  S  K  T  T  S  V  Y  C  F  I  P  L  G  T  K  G  H  G  S  G  T  T  T  *  A  G  K  C  *  T  P  P  Y  L  C  S  F  H  F  Q  *  L  *  E  A  P  F  I  D  K  V  A  G  R  G  S  S  *  S  Y  A  N  *  P  V  K  L  W  K  A  S  Q  V  L  R  Y  I  D  L  Q  K  *  S  *  K  *  E  R  *  Y  I  L  V  G  F  H  H  L  Y  I  V  I  C  V  V  E  Q  *  N  H  M  C  T  H  R  I  F  R  W  K  L  F  G  S  *  S  R  T  N  C  D  R  R  T  L  L  A  *  C  I  H  V  K  *  T  H  L  I  P  N  F  I  *  E  I  R  S  H  N  Q  W  S  S  Y  Y  W   </first_frame>
            <second_frame>  N  K  *  T  P  S  S  K  K  K  N  L  R  *  E  Q  E  Q  K  H  K  M  E  S  E  N  S  V  P  V  I  D  L  E  D  F  P  R  Q  L  S  K  L  I  W  A  C  E  E  W  G  C  F  R  I  L  N  H  D  K  I  L  P  V  S  L  M  A  E  M  K  E  V  V  R  A  L  F  D  L  P  T  E  I  K  K  R  N  K  D  V  I  A  G  S  G  Y  M  A  P  S  E  R  N  P  L  Y  E  A  L  G  L  Y  D  M  S  C  V  E  D  V  D  E  F  C  T  Q  L  D  A  S  P  H  Q  R :   E  T  I  K  K  Y  A  A  A  I  N  G  L  M  M  D  I  L  R  K  M  S  E  G  L  G  L  R  N  V  S  F  E  D  W  P  C  Q  F  R  I  N  K  Y  H  F  T  P  E  A  V  G  S  Y  G  V  Q  I  H  T  D  S  G  F  L  T  I  L  Q  D  D  E  C  V  G  G  L  E  V  M  K  K  S  G  E  F  V  A  V  D  P  W  P  N  T  L  L  V  N  L  G  D  I  G  T  :  V  W  S  N  G  R  L  Y  S  A  K  H  R  V  I  C  K  E  A  K  L  R  V  S  I  A  S  F  L  L  G  P  R  D  T  A  V  E  P  P  P  E  L  V  N  A  E  H  P  R  I  Y  V  P  F  T  F  N  D  Y  R  K  L  R  L  S  T  K  L  Q  A  G  E  A  L  D  L  M  R  T  N  L  *  N  F  G  K  H  L  R  S  S  V  I  L  I  Y  R  N  D  L  E  S  K  K  D  N  I  S  *  W  D  F  I  I  Y  I  S  S  Y  V  W  W  S  N  K  I  I  C  A  H  I  E  F  L  D  G  N  Y  L  V  L  D  P  E  P  I  V  I  G  E  P  C  W  L  D  A  Y  M  L  N  K  L  I  *  Y  Q  I  L  F  E  R  F  V  L  I  I  N  G  L  A  I  I  G  </second_frame>
            <third_frame>   T  N  K  L  Q  V  P  K  K  K  I  *  G  K  S  K  S  K  N  T  K  W  R  V  K  I  Q  C  Q  *  L  I  *  R  I  F  Q  G  N  Y  L  S  *  F  G  H  V  K  N  G  V  V  S  E  F  *  T  M  I  K  S  F  Q  F  H  S  W  Q  R  *  R  K  W  *  G  H  C  L  I  F  Q  L  K  S  R  N  A  T  K  M  *  L  Q  D  L  G  I  W  L  L  V  K  E  T  L  F  M  K  L  W  V  S  M  I  C  L  V  L  K  M  *  M  S  F  V  L  S  W  M  H  L  H  I  K   : E  R  Q  S  R  S  M  L  Q  Q  L  M  D  *  *  W  T  F  C  E  R  *  V  K  D  W  D  C  E  M  F  R  L  R  I  G  L  V  S  L  G  L  T  S  T  T  S  P  Q  K  L  *  V  P  M  G  F  R  Y  T  Q  T  Q  D  S  L  L  F  Y  R  M  M  N  A  L  V  V  S  R  S  *  R  S  L  V  N  L  *  Q  L  I  L  G  Q  T  P  S  L  *  I  L  E  T  *  A  R :   Y  G  A  M  E  D  Y  T  P  P  S  I  E  *  Y  A  R  K  Q  N  Y  E  C  L  L  L  H  S  S  W  D  Q  G  T  R  Q  W  N  H  H  L  S  W  *  M  L  N  T  P  V  S  M  F  L  S  L  S  M  I  I  G  S  S  V  Y  R  Q  S  C  R  Q  G  K  L  L  I  L  C  E  L  T  C  K  T  L  E  S  I  S  G  P  P  L  Y  *  F  T  E  M  I  L  K  V  R  K  I  I  Y  L  S  G  I  S  S  S  I  Y  R  H  M  C  G  G  A  I  K  S  Y  V  H  T  S  N  F  *  M  E  I  I  W  F  L  I  P  N  Q  L  *  *  E  N  L  V  G  L  M  H  T  C  *  I  N  S  S  D  T  K  F  Y  L  R  D  S  F  S  *  S  M  V  *  L  L  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102303" stop="102664"/>
                    <exon start="103581" stop="103896"/>
                    <exon start="104074" stop="104322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQEQKHKMESENSVPVIDLEDFPRQLSKLIWACEEWGCFRILNHDKILPVSLMAEMKEVVRALFDLPTEIKKRNKDVIAGSGYMAPSERNPLYEALGLYDMSCVEDVDEFCTQLDASPHQRETIKKYAAAINGLMMDILRKMSEGLGLRNVSFEDWPCQFRINKYHFTPEAVGSYGVQIHTDSGFLTILQDDECVGGLEVMKKSGEFVAVDPWPNTLLVNLGDIGTVWSNGRLYSAKHRVICKEAKLRVSIASFLLGPRDTAVEPPPELVNAEHPRIYVPFTFNDYRKLRLSTKLQAGEALDLMRTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="104595" PGL_stop="104249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104595" e_stop="104249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104595" e_stop="104249" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104595" stop="104249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGAATCTCTCAAATAAAATTTGGTATCAGATGAGTTTATTTAACATGTATGCATCAAGCCAACAAGGTTCTCCTATCACAATTGGTTCGGGATCAAGAACCAAATAATTTCCATCTAAAAATTCGATGTGTGCACATATGATTTTATTGCTCCACCACACATATGACGATATATAGATGATGAAATCCCACTAAGATATATTATCTTTCTTACTTTCAAGATCATTTCTGTAAATCAATATAACGGAGGACCTGAGATGCTTTCCAAAGTTTTACAGGTTAGTTCGCATAAGATCAAGAGCTTCCCCTGCCTGCAACTTTGTCGATAAACGGAGCTTCCTATAAT</gDNA_template>
            <first_frame> N  E  S  L  K  *  N  L  V  S  D  E  F  I  *  H  V  C  I  K  P  T  R  F  S  Y  H  N  W  F  G  I  K  N  Q  I  I  S  I  *  K  F  D  V  C  T  Y  D  F  I  A  P  P  H  I  *  R  Y  I  D  D  E  I  P  L  R  Y  I  I  F  L  T  F  K  I  I  S  V  N  Q  Y  N  G  G  P  E  M  L  S  K  V  L  Q  V  S  S  H  K  I  K  S  F  P  C  L  Q  L  C  R  *  T  E  L  P  I   </first_frame>
            <second_frame>  T  N  L  S  N  K  I  W  Y  Q  M  S  L  F  N  M  Y  A  S  S  Q  Q  G  S  P  I  T  I  G  S  G  S  R  T  K  *  F  P  S  K  N  S  M  C  A  H  M  I  L  L  L  H  H  T  Y  D  D  I  *  M  M  K  S  H  *  D  I  L  S  F  L  L  S  R  S  F  L  *  I  N  I  T  E  D  L  R  C  F  P  K  F  Y  R  L  V  R  I  R  S  R  A  S  P  A  C  N  F  V  D  K  R  S  F  L  *  </second_frame>
            <third_frame>   R  I  S  Q  I  K  F  G  I  R  *  V  Y  L  T  C  M  H  Q  A  N  K  V  L  L  S  Q  L  V  R  D  Q  E  P  N  N  F  H  L  K  I  R  C  V  H  I  *  F  Y  C  S  T  T  H  M  T  I  Y  R  *  *  N  P  T  K  I  Y  Y  L  S  Y  F  Q  D  H  F  C  K  S  I  *  R  R  T  *  D  A  F  Q  S  F  T  G  *  F  A  *  D  Q  E  L  P  L  P  A  T  L  S  I  N  G  A  S  Y  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020J02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="108585" PGL_stop="110830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108585" e_stop="108757"/>
            <exon e_start="109840" e_stop="110155"/>
            <exon e_start="110333" e_stop="110830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.394" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108585" e_stop="108757" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.394">
            <gDNA_intron_boundary i_start="108758" i_stop="109839" i_length="1082"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109840" e_stop="110155" e_length="316"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.933">
            <gDNA_intron_boundary i_start="110156" i_stop="110332" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="110333" e_stop="110830" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108585" stop="108757"/>
              <exon start="109840" stop="110155"/>
              <exon start="110333" stop="110585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108651" stop="108757"/>
              <exon start="109840" stop="110155"/>
              <exon start="110333" stop="110507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109922" stop="110155"/>
              <exon start="110333" stop="110706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110054" stop="110155"/>
              <exon start="110333" stop="110764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110090" stop="110155"/>
              <exon start="110333" stop="110830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110105" stop="110155"/>
              <exon start="110333" stop="110812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATCTTCCAACTGAAATCAAGAAACGCAACAAAGATGTACTTGTAGGATCTGGGTACATGGCTCCTAGTGAAAAAAACCCTCTTTATGAAGCTTTTGGTCTCTATAATATGTCTTGTCATGAAGATTTAGATGAGTTTTGTACTCAGTTGGATGCATCTCCACACCAAAG : AGAGACAATTAAGAAGTATGCTGCAGCAATTAATGGACTAATGATGGACATTCTGCGAAAGATGAGTGAAGGGTTGGGACTGCCAAATGTTTCTTTTGAGGATTGGCCTTGTCAGTTTAGGATTAACAAGTACAACTTCACGCCAGAAGTTGTAGGTTCCTCTGGGGTTCAGATACACACAGACTTGGCATTCCTTACTATTCTACAGGATGATGAAAGCGTTGGTGGTCTTGAGGTAATGAAGAAGTCTGGTGAATTTGTAGCAGTTGATCGTTGGCCAAACACCCTCCTTGTGAATCTTGGAGACATAGGCACG : GTATGGAGCAATGGAAGATTACACTCTGTCAAGCATAGAGTGATATGCAAGGAAGCAAAACTACGGGTATCTATTGCTTCATTCATCTTGGGACCAAGGGACACAGCAGTGGAACCACCATCTGAGCTGGTAGATGCTGAACACCCCCGTATGTATGTTCCTTTCACTTTCACTGATTATAGAAAGCTCCGTTACTCAACAAAGTTGCAGGCAGGGGAAACTCTTGAACTTATGCGTACTAACTTGTAAAACTTTGGCAAGCATCTAAGATCCTCCGTTATATTGATTTACAGAAATGATCTTGAAAGTAAGAAAGACAATATATCTTAGTGGGATTTCATCATCTATATATCGTCAATGATCTAAGCTACAATAGCCTATAAAATGGCAGAGCATTTATGCATATCAGCAAAGCTTCTATTATCCATCTTTGTATTGTGTGTTCTTCTGTTATCTATTGCTTTTTAAAGAATAGAACAGGTCTTATCTTTCATTACA</gDNA_template>
            <first_frame> F  Y  L  P  T  E  I  K  K  R  N  K  D  V  L  V  G  S  G  Y  M  A  P  S  E  K  N  P  L  Y  E  A  F  G  L  Y  N  M  S  C  H  E  D  L  D  E  F  C  T  Q  L  D  A  S  P  H  Q  R :   E  T  I  K  K  Y  A  A  A  I  N  G  L  M  M  D  I  L  R  K  M  S  E  G  L  G  L  P  N  V  S  F  E  D  W  P  C  Q  F  R  I  N  K  Y  N  F  T  P  E  V  V  G  S  S  G  V  Q  I  H  T  D  L  A  F  L  T  I  L  Q  D  D  E  S  V  G  G  L  E  V  M  K  K  S  G  E  F  V  A  V  D  R  W  P  N  T  L  L  V  N  L  G  D  I  G  T  :  V  W  S  N  G  R  L  H  S  V  K  H  R  V  I  C  K  E  A  K  L  R  V  S  I  A  S  F  I  L  G  P  R  D  T  A  V  E  P  P  S  E  L  V  D  A  E  H  P  R  M  Y  V  P  F  T  F  T  D  Y  R  K  L  R  Y  S  T  K  L  Q  A  G  E  T  L  E  L  M  R  T  N  L  *  N  F  G  K  H  L  R  S  S  V  I  L  I  Y  R  N  D  L  E  S  K  K  D  N  I  S  *  W  D  F  I  I  Y  I  S  S  M  I  *  A  T  I  A  Y  K  M  A  E  H  L  C  I  S  A  K  L  L  L  S  I  F  V  L  C  V  L  L  L  S  I  A  F  *  R  I  E  Q  V  L  S  F  I  T </first_frame>
            <second_frame>  F  I  F  Q  L  K  S  R  N  A  T  K  M  Y  L  *  D  L  G  T  W  L  L  V  K  K  T  L  F  M  K  L  L  V  S  I  I  C  L  V  M  K  I  *  M  S  F  V  L  S  W  M  H  L  H  T  K   : E  R  Q  L  R  S  M  L  Q  Q  L  M  D  *  *  W  T  F  C  E  R  *  V  K  G  W  D  C  Q  M  F  L  L  R  I  G  L  V  S  L  G  L  T  S  T  T  S  R  Q  K  L  *  V  P  L  G  F  R  Y  T  Q  T  W  H  S  L  L  F  Y  R  M  M  K  A  L  V  V  L  R  *  *  R  S  L  V  N  L  *  Q  L  I  V  G  Q  T  P  S  L  *  I  L  E  T  *  A  R :   Y  G  A  M  E  D  Y  T  L  S  S  I  E  *  Y  A  R  K  Q  N  Y  G  Y  L  L  L  H  S  S  W  D  Q  G  T  Q  Q  W  N  H  H  L  S  W  *  M  L  N  T  P  V  C  M  F  L  S  L  S  L  I  I  E  S  S  V  T  Q  Q  S  C  R  Q  G  K  L  L  N  L  C  V  L  T  C  K  T  L  A  S  I  *  D  P  P  L  Y  *  F  T  E  M  I  L  K  V  R  K  T  I  Y  L  S  G  I  S  S  S  I  Y  R  Q  *  S  K  L  Q  *  P  I  K  W  Q  S  I  Y  A  Y  Q  Q  S  F  Y  Y  P  S  L  Y  C  V  F  F  C  Y  L  L  L  F  K  E  *  N  R  S  Y  L  S  L   </second_frame>
            <third_frame>   L  S  S  N  *  N  Q  E  T  Q  Q  R  C  T  C  R  I  W  V  H  G  S  *  *  K  K  P  S  L  *  S  F  W  S  L  *  Y  V  L  S  *  R  F  R  *  V  L  Y  S  V  G  C  I  S  T  P  K  :  R  D  N  *  E  V  C  C  S  N  *  W  T  N  D  G  H  S  A  K  D  E  *  R  V  G  T  A  K  C  F  F  *  G  L  A  L  S  V  *  D  *  Q  V  Q  L  H  A  R  S  C  R  F  L  W  G  S  D  T  H  R  L  G  I  P  Y  Y  S  T  G  *  *  K  R  W  W  S  *  G  N  E  E  V  W  *  I  C  S  S  *  S  L  A  K  H  P  P  C  E  S  W  R  H  R  H   : G  M  E  Q  W  K  I  T  L  C  Q  A  *  S  D  M  Q  G  S  K  T  T  G  I  Y  C  F  I  H  L  G  T  K  G  H  S  S  G  T  T  I  *  A  G  R  C  *  T  P  P  Y  V  C  S  F  H  F  H  *  L  *  K  A  P  L  L  N  K  V  A  G  R  G  N  S  *  T  Y  A  Y  *  L  V  K  L  W  Q  A  S  K  I  L  R  Y  I  D  L  Q  K  *  S  *  K  *  E  R  Q  Y  I  L  V  G  F  H  H  L  Y  I  V  N  D  L  S  Y  N  S  L  *  N  G  R  A  F  M  H  I  S  K  A  S  I  I  H  L  C  I  V  C  S  S  V  I  Y  C  F  L  K  N  R  T  G  L  I  F  H  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108585" stop="108757"/>
                    <exon start="109840" stop="110155"/>
                    <exon start="110333" stop="110581"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYLPTEIKKRNKDVLVGSGYMAPSEKNPLYEAFGLYNMSCHEDLDEFCTQLDASPHQRETIKKYAAAINGLMMDILRKMSEGLGLPNVSFEDWPCQFRINKYNFTPEVVGSSGVQIHTDLAFLTILQDDESVGGLEVMKKSGEFVAVDRWPNTLLVNLGDIGTVWSNGRLHSVKHRVICKEAKLRVSIASFILGPRDTAVEPPSELVDAEHPRMYVPFTFTDYRKLRYSTKLQAGETLELMRTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="114494" PGL_stop="111040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114494" e_stop="113955"/>
            <exon e_start="112007" e_stop="111040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114494" e_stop="113955" e_length="540"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.917">
            <gDNA_intron_boundary i_start="113954" i_stop="112008" i_length="1947"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="112007" e_stop="111040" e_length="968"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114494" stop="113955"/>
              <exon start="112007" stop="111848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114494" stop="114341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114103" stop="113955"/>
              <exon start="112007" stop="111439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111991" stop="111461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111816" stop="111146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111712" stop="111040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACCCCCATTTTAACATATGATCTTGATTTGAAAGAACATGTAAATCAAGAATCATATTTTGGGTTTTCTGCATCAACTGGGACTAACTACCAACTCAACTGCGTATTGAGATGGAACTTAACAGTTGAGTATTTCCCTGAAAAGAAAAATCCTTGGTTGAAGATTGTTTTAGGTGTTGGGATTCCTGTAGTGTCTCTTTTGATTCTTGGCGCGGCGTGTTTAGGGTATTGTTATCATAAGAAAAGGATTGATAGGTCACAGTCTAACATATTGGGTGCACTCAAGAGTTTGCCTGGAACTCCACAAGAGTTTCAGTTCAAGGCTTTGAAGAAAGCTACAAACAATTTTGATGAAAAGAATAAGCTTGGGCAAGGAGGATATGGAGTTGTTTACAGAGGATTTTTAGCTGGTGAGGAGAACAAAGATATTGCTGTCAAATGGTTTTCTAGGGAAAGCATCAAAGGGCAAGATGATTTCTTGGCTGAGCTTACTATTATCAATCGTCTTCGACATAAACATCTTGTCAAATTGCTTG : GATGGTGTCACAAGAATGGAAAGCTACTGCTTGTATATGAATACATGCCTAATGGCAGTCTAGATATGCACCTCTTTGCGGGCCCAGATAAAGAGCCGCTGAGCTGGCACGTCCGCTACAAGATTGTGCAAGGTGTGGCCTCAGCATTACATTATCTGCACAATGAGTATGAGCAGAGGGTGGTCCATCGCGACCTGAAGGCGAGTAACATCATGCTTGACTCAAAGTTCAATGCGCGCCTTGGGGACTTTGGCCTTGCGCGAGCACTTGACAACGAAAGGACCTCGTATGCTGAGGCAGAAGGAGTGCTTGGTACAATGGGATACATTGCACCAGAGTGTTTCCACACAGGGAAAGCCACACAGCAATCTGATGTGTACGCGTTTGGGGCAGTGTTATTGGAAGTTGTATGTGGCCAGAGACCTGGAACCAAGATTAATGGCTTTCAATTCTTTGTTGATTGGGTTTGGTACTTGCACCGCGATGGCCGTATCTTGGAAGCTGTTGATCCAAGGCTTGGAGATGACTATGTTGCTGATGAAGCAAAGAAACTTTTACTACTTGGTTTGGCTTGTGCACATCCTATAGCTACTGACAGGCCTAAAACACAGGCAATAGTTCAGATTATATCAGGGTCAGCACCAGCACCAGAAGTTCCACCATTCAAGCCAGCATTTGTGTGGCCATCAATGGTGCCAATTGACATAGACTCAAGTGTTATGGACACAACATCCATTACTACTTCTCACTTCAATTCAGGATGGAGTCTAGACTATCAAAGCAGGGAGACCCCAACATATGCAGATCACTCTTTGGTGTAGTTACTTGATGGTAAACAACTATTACCAAAAGGAAAATTGATTTTTTTGGCCTTCAATTTTTTAAAAATATTTCCTGTAATTATGTTTTCCTGGGAGGAGGTTAAAAATTTCCTTCAGTTTTTCACTTTTTGTTTGATGTTATTTTTC</gDNA_template>
            <first_frame> Q  K  P  P  F  *  H  M  I  L  I  *  K  N  M  *  I  K  N  H  I  L  G  F  L  H  Q  L  G  L  T  T  N  S  T  A  Y  *  D  G  T  *  Q  L  S  I  S  L  K  R  K  I  L  G  *  R  L  F  *  V  L  G  F  L  *  C  L  F  *  F  L  A  R  R  V  *  G  I  V  I  I  R  K  G  L  I  G  H  S  L  T  Y  W  V  H  S  R  V  C  L  E  L  H  K  S  F  S  S  R  L  *  R  K  L  Q  T  I  L  M  K  R  I  S  L  G  K  E  D  M  E  L  F  T  E  D  F  *  L  V  R  R  T  K  I  L  L  S  N  G  F  L  G  K  A  S  K  G  K  M  I  S  W  L  S  L  L  L  S  I  V  F  D  I  N  I  L  S  N  C  L  :  D  G  V  T  R  M  E  S  Y  C  L  Y  M  N  T  C  L  M  A  V  *  I  C  T  S  L  R  A  Q  I  K  S  R  *  A  G  T  S  A  T  R  L  C  K  V  W  P  Q  H  Y  I  I  C  T  M  S  M  S  R  G  W  S  I  A  T  *  R  R  V  T  S  C  L  T  Q  S  S  M  R  A  L  G  T  L  A  L  R  E  H  L  T  T  K  G  P  R  M  L  R  Q  K  E  C  L  V  Q  W  D  T  L  H  Q  S  V  S  T  Q  G  K  P  H  S  N  L  M  C  T  R  L  G  Q  C  Y  W  K  L  Y  V  A  R  D  L  E  P  R  L  M  A  F  N  S  L  L  I  G  F  G  T  C  T  A  M  A  V  S  W  K  L  L  I  Q  G  L  E  M  T  M  L  L  M  K  Q  R  N  F  Y  Y  L  V  W  L  V  H  I  L  *  L  L  T  G  L  K  H  R  Q  *  F  R  L  Y  Q  G  Q  H  Q  H  Q  K  F  H  H  S  S  Q  H  L  C  G  H  Q  W  C  Q  L  T  *  T  Q  V  L  W  T  Q  H  P  L  L  L  L  T  S  I  Q  D  G  V  *  T  I  K  A  G  R  P  Q  H  M  Q  I  T  L  W  C  S  Y  L  M  V  N  N  Y  Y  Q  K  E  N  *  F  F  W  P  S  I  F  *  K  Y  F  L  *  L  C  F  P  G  R  R  L  K  I  S  F  S  F  S  L  F  V  *  C  Y  F   </first_frame>
            <second_frame>  K  N  P  H  F  N  I  *  S  *  F  E  R  T  C  K  S  R  I  I  F  W  V  F  C  I  N  W  D  *  L  P  T  Q  L  R  I  E  M  E  L  N  S  *  V  F  P  *  K  E  K  S  L  V  E  D  C  F  R  C  W  D  S  C  S  V  S  F  D  S  W  R  G  V  F  R  V  L  L  S  *  E  K  D  *  *  V  T  V  *  H  I  G  C  T  Q  E  F  A  W  N  S  T  R  V  S  V  Q  G  F  E  E  S  Y  K  Q  F  *  *  K  E  *  A  W  A  R  R  I  W  S  C  L  Q  R  I  F  S  W  *  G  E  Q  R  Y  C  C  Q  M  V  F  *  G  K  H  Q  R  A  R  *  F  L  G  *  A  Y  Y  Y  Q  S  S  S  T  *  T  S  C  Q  I  A  W :   M  V  S  Q  E  W  K  A  T  A  C  I  *  I  H  A  *  W  Q  S  R  Y  A  P  L  C  G  P  R  *  R  A  A  E  L  A  R  P  L  Q  D  C  A  R  C  G  L  S  I  T  L  S  A  Q  *  V  *  A  E  G  G  P  S  R  P  E  G  E  *  H  H  A  *  L  K  V  Q  C  A  P  W  G  L  W  P  C  A  S  T  *  Q  R  K  D  L  V  C  *  G  R  R  S  A  W  Y  N  G  I  H  C  T  R  V  F  P  H  R  E  S  H  T  A  I  *  C  V  R  V  W  G  S  V  I  G  S  C  M  W  P  E  T  W  N  Q  D  *  W  L  S  I  L  C  *  L  G  L  V  L  A  P  R  W  P  Y  L  G  S  C  *  S  K  A  W  R  *  L  C  C  *  *  S  K  E  T  F  T  T  W  F  G  L  C  T  S  Y  S  Y  *  Q  A  *  N  T  G  N  S  S  D  Y  I  R  V  S  T  S  T  R  S  S  T  I  Q  A  S  I  C  V  A  I  N  G  A  N  *  H  R  L  K  C  Y  G  H  N  I  H  Y  Y  F  S  L  Q  F  R  M  E  S  R  L  S  K  Q  G  D  P  N  I  C  R  S  L  F  G  V  V  T  *  W  *  T  T  I  T  K  R  K  I  D  F  F  G  L  Q  F  F  K  N  I  S  C  N  Y  V  F  L  G  G  G  *  K  F  P  S  V  F  H  F  L  F  D  V  I  F  </second_frame>
            <third_frame>   K  T  P  I  L  T  Y  D  L  D  L  K  E  H  V  N  Q  E  S  Y  F  G  F  S  A  S  T  G  T  N  Y  Q  L  N  C  V  L  R  W  N  L  T  V  E  Y  F  P  E  K  K  N  P  W  L  K  I  V  L  G  V  G  I  P  V  V  S  L  L  I  L  G  A  A  C  L  G  Y  C  Y  H  K  K  R  I  D  R  S  Q  S  N  I  L  G  A  L  K  S  L  P  G  T  P  Q  E  F  Q  F  K  A  L  K  K  A  T  N  N  F  D  E  K  N  K  L  G  Q  G  G  Y  G  V  V  Y  R  G  F  L  A  G  E  E  N  K  D  I  A  V  K  W  F  S  R  E  S  I  K  G  Q  D  D  F  L  A  E  L  T  I  I  N  R  L  R  H  K  H  L  V  K  L  L   : G  W  C  H  K  N  G  K  L  L  L  V  Y  E  Y  M  P  N  G  S  L  D  M  H  L  F  A  G  P  D  K  E  P  L  S  W  H  V  R  Y  K  I  V  Q  G  V  A  S  A  L  H  Y  L  H  N  E  Y  E  Q  R  V  V  H  R  D  L  K  A  S  N  I  M  L  D  S  K  F  N  A  R  L  G  D  F  G  L  A  R  A  L  D  N  E  R  T  S  Y  A  E  A  E  G  V  L  G  T  M  G  Y  I  A  P  E  C  F  H  T  G  K  A  T  Q  Q  S  D  V  Y  A  F  G  A  V  L  L  E  V  V  C  G  Q  R  P  G  T  K  I  N  G  F  Q  F  F  V  D  W  V  W  Y  L  H  R  D  G  R  I  L  E  A  V  D  P  R  L  G  D  D  Y  V  A  D  E  A  K  K  L  L  L  L  G  L  A  C  A  H  P  I  A  T  D  R  P  K  T  Q  A  I  V  Q  I  I  S  G  S  A  P  A  P  E  V  P  P  F  K  P  A  F  V  W  P  S  M  V  P  I  D  I  D  S  S  V  M  D  T  T  S  I  T  T  S  H  F  N  S  G  W  S  L  D  Y  Q  S  R  E  T  P  T  Y  A  D  H  S  L  V  *  L  L  D  G  K  Q  L  L  P  K  G  K  L  I  F  L  A  F  N  F  L  K  I  F  P  V  I  M  F  S  W  E  E  V  K  N  F  L  Q  F  F  T  F  C  L  M  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114492" stop="113955"/>
                    <exon start="112007" stop="111187"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1356</number_coding_nucleotides>
                  <number_encoded_amino_acids>452</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTPILTYDLDLKEHVNQESYFGFSASTGTNYQLNCVLRWNLTVEYFPEKKNPWLKIVLGVGIPVVSLLILGAACLGYCYHKKRIDRSQSNILGALKSLPGTPQEFQFKALKKATNNFDEKNKLGQGGYGVVYRGFLAGEENKDIAVKWFSRESIKGQDDFLAELTIINRLRHKHLVKLLGWCHKNGKLLLVYEYMPNGSLDMHLFAGPDKEPLSWHVRYKIVQGVASALHYLHNEYEQRVVHRDLKASNIMLDSKFNARLGDFGLARALDNERTSYAEAEGVLGTMGYIAPECFHTGKATQQSDVYAFGAVLLEVVCGQRPGTKINGFQFFVDWVWYLHRDGRILEAVDPRLGDDYVADEAKKLLLLGLACAHPIATDRPKTQAIVQIISGSAPAPEVPPFKPAFVWPSMVPIDIDSSVMDTTSITTSHFNSGWSLDYQSRETPTYADHSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="113905" PGL_stop="114651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113905" e_stop="114651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="113905" e_stop="114651" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113905" stop="114651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAACAAATGCACAAAATCTATGTTTGAAGAAAAACTAAGAACACTTACCAAGCAATTTGACAAGATGTTTATGTCGAAGACGATTGATAATAGTAAGCTCAGCCAAGAAATCATCTTGCCCTTTGATGCTTTCCCTAGAAAACCATTTGACAGCAATATCTTTGTTCTCCTCACCAGCTAAAAATCCTCTGTAAACAACTCCATATCCTCCTTGCCCAAGCTTATTCTTTTCATCAAAATTGTTTGTAGCTTTCTTCAAAGCCTTGAACTGAAACTCTTGTGGAGTTCCAGGCAAACTCTTGAGTGCACCCAATATGTTAGACTGTGACCTATCAATCCTTTTCTTATGATAACAATACCCTAAACACGCCGCGCCAAGAATCAAAAGAGACACTACAGGAATCCCAACACCTAAAACAATCTTCAACCAAGGATTTTTCTTTTCAGGGAAATACTCAACTGTTAAGTTCCATCTCAATACGCAGTTGAGTTGGTAGTTAGTCCCAGTTGATGCAGAAAACCCAAAATATGATTCTTGATTTACATGTTCTTTCAAATCAAGATCATATGTTAAAATGGGGGTTTTTGGTATAGGTGGGGTAGACCCATTTTTCAGTGCTTGTTCAACAATATAAACATCAAGAACTTTCTTGATTCCATCATACTGTACCCAAACATTATAGAATCTTGCACCAATAGGAGCAAGTTCTATACCATGGGGTGTTAAAGATTCGACCTTTACAGA</gDNA_template>
            <first_frame> S  N  K  C  T  K  S  M  F  E  E  K  L  R  T  L  T  K  Q  F  D  K  M  F  M  S  K  T  I  D  N  S  K  L  S  Q  E  I  I  L  P  F  D  A  F  P  R  K  P  F  D  S  N  I  F  V  L  L  T  S  *  K  S  S  V  N  N  S  I  S  S  L  P  K  L  I  L  F  I  K  I  V  C  S  F  L  Q  S  L  E  L  K  L  L  W  S  S  R  Q  T  L  E  C  T  Q  Y  V  R  L  *  P  I  N  P  F  L  M  I  T  I  P  *  T  R  R  A  K  N  Q  K  R  H  Y  R  N  P  N  T  *  N  N  L  Q  P  R  I  F  L  F  R  E  I  L  N  C  *  V  P  S  Q  Y  A  V  E  L  V  V  S  P  S  *  C  R  K  P  K  I  *  F  L  I  Y  M  F  F  Q  I  K  I  I  C  *  N  G  G  F  W  Y  R  W  G  R  P  I  F  Q  C  L  F  N  N  I  N  I  K  N  F  L  D  S  I  I  L  Y  P  N  I  I  E  S  C  T  N  R  S  K  F  Y  T  M  G  C  *  R  F  D  L  Y  R </first_frame>
            <second_frame>  Q  T  N  A  Q  N  L  C  L  K  K  N  *  E  H  L  P  S  N  L  T  R  C  L  C  R  R  R  L  I  I  V  S  S  A  K  K  S  S  C  P  L  M  L  S  L  E  N  H  L  T  A  I  S  L  F  S  S  P  A  K  N  P  L  *  T  T  P  Y  P  P  C  P  S  L  F  F  S  S  K  L  F  V  A  F  F  K  A  L  N  *  N  S  C  G  V  P  G  K  L  L  S  A  P  N  M  L  D  C  D  L  S  I  L  F  L  *  *  Q  Y  P  K  H  A  A  P  R  I  K  R  D  T  T  G  I  P  T  P  K  T  I  F  N  Q  G  F  F  F  S  G  K  Y  S  T  V  K  F  H  L  N  T  Q  L  S  W  *  L  V  P  V  D  A  E  N  P  K  Y  D  S  *  F  T  C  S  F  K  S  R  S  Y  V  K  M  G  V  F  G  I  G  G  V  D  P  F  F  S  A  C  S  T  I  *  T  S  R  T  F  L  I  P  S  Y  C  T  Q  T  L  *  N  L  A  P  I  G  A  S  S  I  P  W  G  V  K  D  S  T  F  T   </second_frame>
            <third_frame>   K  Q  M  H  K  I  Y  V  *  R  K  T  K  N  T  Y  Q  A  I  *  Q  D  V  Y  V  E  D  D  *  *  *  *  A  Q  P  R  N  H  L  A  L  *  C  F  P  *  K  T  I  *  Q  Q  Y  L  C  S  P  H  Q  L  K  I  L  C  K  Q  L  H  I  L  L  A  Q  A  Y  S  F  H  Q  N  C  L  *  L  S  S  K  P  *  T  E  T  L  V  E  F  Q  A  N  S  *  V  H  P  I  C  *  T  V  T  Y  Q  S  F  S  Y  D  N  N  T  L  N  T  P  R  Q  E  S  K  E  T  L  Q  E  S  Q  H  L  K  Q  S  S  T  K  D  F  S  F  Q  G  N  T  Q  L  L  S  S  I  S  I  R  S  *  V  G  S  *  S  Q  L  M  Q  K  T  Q  N  M  I  L  D  L  H  V  L  S  N  Q  D  H  M  L  K  W  G  F  L  V  *  V  G  *  T  H  F  S  V  L  V  Q  Q  Y  K  H  Q  E  L  S  *  F  H  H  T  V  P  K  H  Y  R  I  L  H  Q  *  E  Q  V  L  Y  H  G  V  L  K  I  R  P  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020J02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="127192" PGL_stop="130902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127192" e_stop="127276"/>
            <exon e_start="129311" e_stop="129322"/>
            <exon e_start="130297" e_stop="130902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.312" acc_prob="0.000" e_score="0.935"/>
          <exon-intron don_prob="0.308" acc_prob="0.988" e_score="0.667"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="127192" e_stop="127276" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.312" acc_prob="0.000">
            <gDNA_intron_boundary i_start="127277" i_stop="129310" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="129311" e_stop="129322" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.308" acc_prob="0.988">
            <gDNA_intron_boundary i_start="129323" i_stop="130296" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="130297" e_stop="130902" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127192" stop="127276"/>
              <exon start="129311" stop="129322"/>
              <exon start="130297" stop="130902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127200" stop="127276"/>
              <exon start="129311" stop="129322"/>
              <exon start="130297" stop="130898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127211" stop="127276"/>
              <exon start="129311" stop="129322"/>
              <exon start="130297" stop="130879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127243" stop="127276"/>
              <exon start="129311" stop="129322"/>
              <exon start="130297" stop="130863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130433" stop="130899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130433" stop="130899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130434" stop="130898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGCTGTAAAGCTCAGAGAAGTTGCCTCCGCCGATTTGCACAGAGAATTCAGCCGCCAAATTGACAGCCGTTCAATTTTGCCG : TAAGAAACTGTG : ATCAATTTTAGAGATATGCAAGACCAGAGAGGACTTGAGGAAGCTTCAGCTCCTAAAATGCGGAAAAAGAAAACATCACAACCGAAGGCTACAGTATTGCAAAAAGAAGGGAATAAGGCAAAAAGGATACAAGATGTGCATGCAATGCCAATTCAAAATGGGTTAAAACACACCAAGAGAGTCCCACCAAACGAAGTTTCCCCATTATTCCAATATGCTGAGAAATCAACACCTGAATTCTCGCCAGATACTTCCACTTCTGGAAAAGAATATCGGGCATTAAGGAGAAAGTATCTATTGCTGGAAGAAGAAAGTTTTGGTCTTAATAAAGAATTGAGAGAAACCGATGATGAGATCAAGGCCCTTGAAGACGAGAAGCTAACACTCCTTGATGATCTTGTTGTGTTAGAAGGCCTGGTTGATCCTTCAGATATTCAATCCCAAGGCCAGCGATTATGATGGTTTATTTATAATGTGTTTTTTCGGTAAACTGGGGATATATACAGAATTGTGTACAATAATCCAACTTCTGTTAGCATAAAGTTGAGATTGTAACGATGCATTATATAACATCGACTGATTGTTTATTGCACAATTACCAAACTG</gDNA_template>
            <first_frame> L  C  C  K  A  Q  R  S  C  L  R  R  F  A  Q  R  I  Q  P  P  N  *  Q  P  F  N  F  A   : V  R  N  C   : D  Q  F  *  R  Y  A  R  P  E  R  T  *  G  S  F  S  S  *  N  A  E  K  E  N  I  T  T  E  G  Y  S  I  A  K  R  R  E  *  G  K  K  D  T  R  C  A  C  N  A  N  S  K  W  V  K  T  H  Q  E  S  P  T  K  R  S  F  P  I  I  P  I  C  *  E  I  N  T  *  I  L  A  R  Y  F  H  F  W  K  R  I  S  G  I  K  E  K  V  S  I  A  G  R  R  K  F  W  S  *  *  R  I  E  R  N  R  *  *  D  Q  G  P  *  R  R  E  A  N  T  P  *  *  S  C  C  V  R  R  P  G  *  S  F  R  Y  S  I  P  R  P  A  I  M  M  V  Y  L  *  C  V  F  S  V  N  W  G  Y  I  Q  N  C  V  Q  *  S  N  F  C  *  H  K  V  E  I  V  T  M  H  Y  I  T  S  T  D  C  L  L  H  N  Y  Q  T  </first_frame>
            <second_frame>  F  A  V  K  L  R  E  V  A  S  A  D  L  H  R  E  F  S  R  Q  I  D  S  R  S  I  L  P  :  *  E  T  V  :  I  N  F  R  D  M  Q  D  Q  R  G  L  E  E  A  S  A  P  K  M  R  K  K  K  T  S  Q  P  K  A  T  V  L  Q  K  E  G  N  K  A  K  R  I  Q  D  V  H  A  M  P  I  Q  N  G  L  K  H  T  K  R  V  P  P  N  E  V  S  P  L  F  Q  Y  A  E  K  S  T  P  E  F  S  P  D  T  S  T  S  G  K  E  Y  R  A  L  R  R  K  Y  L  L  L  E  E  E  S  F  G  L  N  K  E  L  R  E  T  D  D  E  I  K  A  L  E  D  E  K  L  T  L  L  D  D  L  V  V  L  E  G  L  V  D  P  S  D  I  Q  S  Q  G  Q  R  L  *  W  F  I  Y  N  V  F  F  R  *  T  G  D  I  Y  R  I  V  Y  N  N  P  T  S  V  S  I  K  L  R  L  *  R  C  I  I  *  H  R  L  I  V  Y  C  T  I  T  K  L </second_frame>
            <third_frame>   L  L  *  S  S  E  K  L  P  P  P  I  C  T  E  N  S  A  A  K  L  T  A  V  Q  F  C  R :   K  K  L  * :   S  I  L  E  I  C  K  T  R  E  D  L  R  K  L  Q  L  L  K  C  G  K  R  K  H  H  N  R  R  L  Q  Y  C  K  K  K  G  I  R  Q  K  G  Y  K  M  C  M  Q  C  Q  F  K  M  G  *  N  T  P  R  E  S  H  Q  T  K  F  P  H  Y  S  N  M  L  R  N  Q  H  L  N  S  R  Q  I  L  P  L  L  E  K  N  I  G  H  *  G  E  S  I  Y  C  W  K  K  K  V  L  V  L  I  K  N  *  E  K  P  M  M  R  S  R  P  L  K  T  R  S  *  H  S  L  M  I  L  L  C  *  K  A  W  L  I  L  Q  I  F  N  P  K  A  S  D  Y  D  G  L  F  I  M  C  F  F  G  K  L  G  I  Y  T  E  L  C  T  I  I  Q  L  L  L  A  *  S  *  D  C  N  D  A  L  Y  N  I  D  *  L  F  I  A  Q  L  P  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129314" stop="129322"/>
                    <exon start="130297" stop="130755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETVINFRDMQDQRGLEEASAPKMRKKKTSQPKATVLQKEGNKAKRIQDVHAMPIQNGLKHTKRVPPNEVSPLFQYAEKSTPEFSPDTSTSGKEYRALRRKYLLLEEESFGLNKELRETDDEIKALEDEKLTLLDDLVVLEGLVDPSDIQSQGQRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="130980" PGL_stop="131763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130980" e_stop="131763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="130980" e_stop="131763" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130980" stop="131763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131078" stop="131480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131187" stop="131477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGTTTTATAATACCAACATGATAAGATATTCCATTAAAGAATGAACTACTAGTACATATAGAAGCAAAGATGCCAATACATAATGCAATTACTAGACAAGTAAAAGAATTTGCAGTATCCCTATTAGTAAAACCTGACTAGGTAGCAAGAACCAAAACTCAAAACTAAAGGACAAATAGAATAAAGAATTACTAATTATTTGTATTCTGCTACTAATTACATGTATTCTTCTAAGAATTTTGTGTTGGCTTCTTCATGCAACCATTTTCAGCAGCTACTGGTTGCAATATCTTGTTACTTACCTTATATAACACAAATAAATAGCACTGCAGCTGAACTATACCACAGTACCCATATTGGAATGTGCCACTCTGACAACAAGTGGAGATGTTACCCATGTTCTTTTGTTCCTCCATGACAAGGACCCAAAGACATATCCCTGTGTAGGTGCAGCCACTTTGAAAGTCACTGTGAAATTCATCTTCTGGTAATATCTAGTGAAGGCTAATCTTCGCGGCACCACAGTAACATTGATACCCTTTGGTGCAAATATAACTGCCTTGTAAGTACTCCTTGACTTTCCCACATTTGTGACAGTTCGAGATACTGAGTAATTGTTTCTGAGGTTTGGTACTGTGATGGAGGGATAATTTAGTTCATTTGGCGATGCAAAGGTTTGATCACACGTTCTGTTGTCCCTTGTAATTAGATGCAGAGATTTCTCGTCATAACCAATTGAACAAAGAAATGCTCTGTAATCTTCTGGTTGTGCATCATATATC</gDNA_template>
            <first_frame> W  V  L  *  Y  Q  H  D  K  I  F  H  *  R  M  N  Y  *  Y  I  *  K  Q  R  C  Q  Y  I  M  Q  L  L  D  K  *  K  N  L  Q  Y  P  Y  *  *  N  L  T  R  *  Q  E  P  K  L  K  T  K  G  Q  I  E  *  R  I  T  N  Y  L  Y  S  A  T  N  Y  M  Y  S  S  K  N  F  V  L  A  S  S  C  N  H  F  Q  Q  L  L  V  A  I  S  C  Y  L  P  Y  I  T  Q  I  N  S  T  A  A  E  L  Y  H  S  T  H  I  G  M  C  H  S  D  N  K  W  R  C  Y  P  C  S  F  V  P  P  *  Q  G  P  K  D  I  S  L  C  R  C  S  H  F  E  S  H  C  E  I  H  L  L  V  I  S  S  E  G  *  S  S  R  H  H  S  N  I  D  T  L  W  C  K  Y  N  C  L  V  S  T  P  *  L  S  H  I  C  D  S  S  R  Y  *  V  I  V  S  E  V  W  Y  C  D  G  G  I  I  *  F  I  W  R  C  K  G  L  I  T  R  S  V  V  P  C  N  *  M  Q  R  F  L  V  I  T  N  *  T  K  K  C  S  V  I  F  W  L  C  I  I  Y  </first_frame>
            <second_frame>  G  F  Y  N  T  N  M  I  R  Y  S  I  K  E  *  T  T  S  T  Y  R  S  K  D  A  N  T  *  C  N  Y  *  T  S  K  R  I  C  S  I  P  I  S  K  T  *  L  G  S  K  N  Q  N  S  K  L  K  D  K  *  N  K  E  L  L  I  I  C  I  L  L  L  I  T  C  I  L  L  R  I  L  C  W  L  L  H  A  T  I  F  S  S  Y  W  L  Q  Y  L  V  T  Y  L  I  *  H  K  *  I  A  L  Q  L  N  Y  T  T  V  P  I  L  E  C  A  T  L  T  T  S  G  D  V  T  H  V  L  L  F  L  H  D  K  D  P  K  T  Y  P  C  V  G  A  A  T  L  K  V  T  V  K  F  I  F  W  *  Y  L  V  K  A  N  L  R  G  T  T  V  T  L  I  P  F  G  A  N  I  T  A  L  *  V  L  L  D  F  P  T  F  V  T  V  R  D  T  E  *  L  F  L  R  F  G  T  V  M  E  G  *  F  S  S  F  G  D  A  K  V  *  S  H  V  L  L  S  L  V  I  R  C  R  D  F  S  S  *  P  I  E  Q  R  N  A  L  *  S  S  G  C  A  S  Y  I </second_frame>
            <third_frame>   G  F  I  I  P  T  *  *  D  I  P  L  K  N  E  L  L  V  H  I  E  A  K  M  P  I  H  N  A  I  T  R  Q  V  K  E  F  A  V  S  L  L  V  K  P  D  *  V  A  R  T  K  T  Q  N  *  R  T  N  R  I  K  N  Y  *  L  F  V  F  C  Y  *  L  H  V  F  F  *  E  F  C  V  G  F  F  M  Q  P  F  S  A  A  T  G  C  N  I  L  L  L  T  L  Y  N  T  N  K  *  H  C  S  *  T  I  P  Q  Y  P  Y  W  N  V  P  L  *  Q  Q  V  E  M  L  P  M  F  F  C  S  S  M  T  R  T  Q  R  H  I  P  V  *  V  Q  P  L  *  K  S  L  *  N  S  S  S  G  N  I  *  *  R  L  I  F  A  A  P  Q  *  H  *  Y  P  L  V  Q  I  *  L  P  C  K  Y  S  L  T  F  P  H  L  *  Q  F  E  I  L  S  N  C  F  *  G  L  V  L  *  W  R  D  N  L  V  H  L  A  M  Q  R  F  D  H  T  F  C  C  P  L  *  L  D  A  E  I  S  R  H  N  Q  L  N  K  E  M  L  C  N  L  L  V  V  H  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131166" stop="131399"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITNYLYSATNYMYSSKNFVLASSCNHFQQLLVAISCYLPYITQINSTAAELYHSTHIGMCHSDNKWRCYPCSFVPP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="135536" PGL_stop="131053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135536" e_stop="135150"/>
            <exon e_start="135059" e_stop="134962"/>
            <exon e_start="134865" e_stop="134768"/>
            <exon e_start="134676" e_stop="134518"/>
            <exon e_start="133960" e_stop="133849"/>
            <exon e_start="133763" e_stop="133241"/>
            <exon e_start="133160" e_stop="133054"/>
            <exon e_start="132971" e_stop="132729"/>
            <exon e_start="132640" e_stop="132526"/>
            <exon e_start="132277" e_stop="132091"/>
            <exon e_start="131881" e_stop="131053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.267" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.989" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="0.990"/>
          <exon-intron don_prob="0.980" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="0.974"/>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="135536" e_stop="135150" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.267" acc_prob="0.994">
            <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135059" e_stop="134962" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.932">
            <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="134865" e_stop="134768" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134676" e_stop="134518" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.850">
            <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="133960" e_stop="133849" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="133763" e_stop="133241" e_length="523"/>
          </exon>
          <intron i_serial="6" don_prob="0.904" acc_prob="0.766">
            <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="133160" e_stop="133054" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="133053" i_stop="132972" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="132971" e_stop="132729" e_length="243"/>
          </exon>
          <intron i_serial="8" don_prob="0.724" acc_prob="0.992">
            <gDNA_intron_boundary i_start="132728" i_stop="132641" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="0.974">
            <gDNA_exon_boundary e_start="132640" e_stop="132526" e_length="115"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="132277" e_stop="132091" e_length="187"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209"/>
          </intron>
          <exon e_serial="11" e_score="0.987">
            <gDNA_exon_boundary e_start="131881" e_stop="131053" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135536" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135533" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135350" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135261" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133924" stop="133849"/>
              <exon start="133763" stop="133314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133699" stop="133241"/>
              <exon start="133160" stop="133054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133698" stop="133241"/>
              <exon start="133160" stop="133081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133448" stop="133241"/>
              <exon start="133160" stop="133054"/>
              <exon start="132971" stop="132731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133158" stop="133054"/>
              <exon start="132971" stop="132729"/>
              <exon start="132640" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133158" stop="133054"/>
              <exon start="132971" stop="132729"/>
              <exon start="132640" stop="132526"/>
              <exon start="132277" stop="132093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132612" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132599" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132544" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132544" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132174" stop="132091"/>
              <exon start="131881" stop="131544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131663" stop="131053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131603" stop="131068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428334" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCATTTTCTTTTGTCTAAGCAATCGCGAAAAAAATTATTTAAGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTTAATGGAAATATATTTTGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAG : TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA : TGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA : AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG : GAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG : GAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG : GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAG : TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACG : CCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG : CCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG : CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGAGTGGCACATTCCAATATGGGTACTGTGGTATAGTTCAGCTGCAGTGCTATTTATTTGTGTTATATAAGGTAAGTAACAAGATATTGCAACCAGTAGCTGCTGAAAATGGTTGCATGAAGAAGCCAACACAAAATTCTTAGAAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTCTTTATTCTATTTGTCCTTTAGTTTTGAGTTTTGGTTCTTGCTACCTAGTCAGGTTTTACTAATAGGGATACTGCAAATTCTTTTACTTGTCTAGTAATTGCATTATGTATTGGC</gDNA_template>
            <first_frame> F  H  F  L  L  S  K  Q  S  R  K  K  L  F  K  R  S  N  M  I  I  *  N  I  S  *  F  Y  P  T  Q  Y  V  N  G  N  I  F  C  L  L  L  L  H  S  I  P  V  T  E  *  S  L  S  L  S  L  S  L  S  S  L  F  S  N  H  S  L  S  L  C  V  L  F  C  Y  K  K  P  H  L  F  F  F  H  L  V  V  D  N  T  F  F  Y  *  P  Y  T  S  R  *  E  M  G  V  S  K  K  T  L  F  L  L  F  V  S  V  F  L  G  E  I  S  L  C  S  S  T  K  :  L  Y  V  V  Y  M  G  S  K  D  S  D  E  H  Q  D  E  I  L  R  Q  N  H  Q  M  L  T  D  I  H  G  G  N :   V  E  Q  A  K  S  S  H  V  Y  S  Y  R  H  G  F  K  G  F  A  A  K  L  T  E  K  Q  A  S  E  I  S   : K  M  P  G  V  V  S  V  F  P  N  T  K  R  N  L  H  T  T  H  S  W  D  F  M  G  L  S  E  D  E  T  M  E  I  P  G  F  S  T  K  N  Q  V  N  V  I  I  G  F  I  D  T   : G  I  W  P  E  S  P  S  F  R  D  T  H  M  P  P  V  P  A  G  W  K  G  Q  C  Q  S  G  E  A  F  N  A  S  I  C  N  R :   K  I  I  G  A  R  Y  Y  M  S  G  Y  A  A  E  E  D  E  K  I  M  F  K  S  A  R  D  S  S  G  H  G  S  H  T  A  S  T  A  A  G  R  Y  V  A  D  M  N  Y  K  G  L  A  S  G  G  A  R  G  G  A  P  M  A  R  I  A  V  Y  K  T  C  W  S  S  G  C  Y  D  V  D  L  L  A  A  F  D  D  A  I  R  D  G  V  H  V  I  S  I  S  L  G  P  D  A  P  Q  G  D  Y  F  S  D  A  I  S  V  G  S  F  H  A  V  S  R  G  I  L  V  V  A  S  V  G  N  E  G  T  S  G  S  A  T  N  L  A  P  W  M  I  T  V  A  A  S  S  T  D  R  D  F  T  S  D  V  L  L  G  N  R  V  Q  L  T  :  G  E  S  L  S  L  S  Q  M  H  T  S  A  K  I  I  P  A  S  E  A  Y  A  G  Y  F  T  P  Y  Q  S  R  *  S  R  S :   Y  C  L  D  S  S  L  N  R  T  K  A  K  G  K  V  L  V  C  R  H  A  G  S  S  S  E  S  K  L  E  K  S  N  I  V  K  Q  A  G  G  V  G  M  I  L  I  D  E  A  D  K  G  V  A  I  P  F  S  I  P  A  A  T  V  G  Q  K  I  G  K  K  I  L  A  Y  I  N  N  T  R :   L  P  T  A  R  I  L  S  A  K  T  V  L  G  A  Q  P  A  P  R  V  T  A  F  S  S  R  G  P  N  S  L  T  P  E  I  L  K  :  P  D  I  T  A  P  G  L  N  I  L  A  A  W  S  P  A  M  S  R  L  K  F  N  I  L  S  G  T  S  M  A  C  P  H  I  S  G  V  V  A  L  L  K  A  V  H  P  S  W  S  P  S  A  I  K  S  A  I  M  T  T   : A  K  L  S  D  M  H  H  K  P  I  I  V  D  P  E  G  K  K  A  N  P  F  D  F  G  S  G  F  V  N  P  T  K  V  L  N  P  G  L  I  Y  D  A  Q  P  E  D  Y  R  A  F  L  C  S  I  G  Y  D  E  K  S  L  H  L  I  T  R  D  N  R  T  C  D  Q  T  F  A  S  P  N  E  L  N  Y  P  S  I  T  V  P  N  L  R  N  N  Y  S  V  S  R  T  V  T  N  V  G  K  S  R  S  T  Y  K  A  V  I  F  A  P  K  G  I  N  V  T  V  V  P  R  R  L  A  F  T  R  Y  Y  Q  K  M  N  F  T  V  T  F  K  V  A  A  P  T  Q  G  Y  V  F  G  S  L  S  W  R  N  K  R  T  W  V  T  S  P  L  V  V  R  V  A  H  S  N  M  G  T  V  V  *  F  S  C  S  A  I  Y  L  C  Y  I  R  *  V  T  R  Y  C  N  Q  *  L  L  K  M  V  A  *  R  S  Q  H  K  I  L  R  R  I  H  V  I  S  S  R  I  Q  I  I  S  N  S  L  F  Y  L  S  F  S  F  E  F  W  F  L  L  P  S  Q  V  L  L  I  G  I  L  Q  I  L  L  L  V  *  *  L  H  Y  V  L   </first_frame>
            <second_frame>  S  I  F  F  C  L  S  N  R  E  K  N  Y  L  R  D  R  I  *  L  Y  E  I  S  L  N  F  I  R  R  S  T  L  M  E  I  Y  F  V  Y  Y  Y  Y  T  V  Y  L  *  L  N  N  L  F  L  F  L  S  P  S  P  L  Y  F  Q  I  I  L  S  L  C  V  S  C  S  A  I  K  N  L  I  F  F  F  F  I  L  *  L  I  I  H  S  F  T  S  L  I  H  Q  D  R  R  W  V  F  Q  K  R  L  F  F  Y  Y  L  L  V  F  F  L  E  K  L  V  S  A  L  L  P  S :   Y  M  W  C  T  W  E  A  K  I  V  M  S  I  K  M  R  F  *  G  K  T  I  K  C  L  L  I  F  M  E  E   : M  L  N  K  P  R  V  L  M  Y  T  V  I  D  M  V  L  K  A  L  Q  P  S  *  L  R  N  R  L  L  K  Y  L  :  K  C  L  V  W  Y  L  Y  F  Q  I  L  R  E  T  C  I  Q  L  I  H  G  I  L  W  G  S  V  K  M  K  Q  W  K  S  Q  V  F  P  P  R  T  K  L  M  *  S  L  V  S  L  I  Q  :  E  F  G  L  S  L  Q  V  L  G  T  P  T  C  L  Q  C  L  L  D  G  K  D  N  A  N  Q  G  K  H  S  M  P  Q  Y  A  T   : G  K  *  L  G  Q  D  I  I  *  V  A  M  Q  L  K  K  M  K  R  S  C  S  S  L  P  G  T  V  L  V  M  E  V  I  Q  L  Q  L  L  L  G  V  M  *  L  I  *  I  T  K  V  W  H  L  E  E  P  E  V  V  P  Q  W  P  G  *  Q  C  T  K  P  A  G  V  L  V  A  M  M  L  I  C  W  L  H  L  M  M  Q  L  E  M  G  F  M  S  F  L  Y  L  W  A  Q  M  L  P  K  E  I  I  L  V  M  Q  F  L  W  G  H  F  M  L  L  A  V  G  Y  L  *  W  P  P  L  E  M  K  E  P  L  V  Q  P  Q  I  *  L  L  G  *  S  Q  L  Q  P  V  Q  P  I  E  I  L  H  L  M  F  Y  *  E  I  E  F  N  S  R :   V  K  V  L  A  Y  L  K  C  I  H  L  Q  K  S  Y  L  L  L  K  L  M  L  D  T  S  L  L  I  N  P  G  E  A  E   : V  I  A  *  I  V  L  *  I  E  L  R  P  K  G  R  F  L  C  V  D  M  L  E  A  Q  V  S  Q  S  W  R  K  A  I  *  L  N  K  L  V  E  L  G  *  S  L  L  M  K  Q  T  R  V  W  L  F  P  S  P  F  Q  Q  Q  L  L  G  K  R  L  E  K  R  S  *  L  T  L  I  I  H   : A  S  L  L  Q  E  F  S  L  L  K  L  F  W  E  L  N  L  L  L  E  *  Q  H  F  L  Q  E  V  L  I  L  *  H  Q  K  F  *  S :   L  I  L  L  L  P  V  *  I  S  W  Q  H  G  P  Q  Q  C  L  G  *  S  S  T  Y  S  L  E  P  P  W  L  A  L  T  Y  Q  E  L  L  P  C  *  K  P  C  I  H  H  G  L  P  L  Q  S  N  Q  P  S  *  Q  Q  :  P  N  Y  Q  I  C  I  T  N  P  *  *  *  I  L  K  G  R  R  L  I  H  L  I  L  V  L  D  L  L  T  P  R  K  S  S  I  L  V  *  Y  M  M  H  N  Q  K  I  T  E  H  F  F  V  Q  L  V  M  T  R  N  L  C  I  *  L  Q  G  T  T  E  R  V  I  K  P  L  H  R  Q  M  N  *  I  I  P  P  S  Q  Y  Q  T  S  E  T  I  T  Q  Y  L  E  L  S  Q  M  W  E  S  Q  G  V  L  T  R  Q  L  Y  L  H  Q  R  V  S  M  L  L  W  C  R  E  D  *  P  S  L  D  I  T  R  R  *  I  S  Q  *  L  S  K  W  L  H  L  H  R  D  M  S  L  G  P  C  H  G  G  T  K  E  H  G  *  H  L  H  L  L  S  E  W  H  I  P  I  W  V  L  W  Y  S  S  A  A  V  L  F  I  C  V  I  *  G  K  *  Q  D  I  A  T  S  S  C  *  K  W  L  H  E  E  A  N  T  K  F  L  E  E  Y  M  *  L  V  A  E  Y  K  *  L  V  I  L  Y  S  I  C  P  L  V  L  S  F  G  S  C  Y  L  V  R  F  Y  *  *  G  Y  C  K  F  F  Y  L  S  S  N  C  I  M  Y  W  </second_frame>
            <third_frame>   P  F  S  F  V  *  A  I  A  K  K  I  I  *  E  I  E  Y  D  Y  M  K  Y  L  L  I  L  S  D  A  V  R  *  W  K  Y  I  L  S  T  T  I  T  Q  Y  T  C  D  *  I  I  S  F  S  F  S  L  P  L  L  F  I  F  K  S  F  S  L  S  V  C  L  V  L  L  *  K  T  S  S  F  F  F  S  S  C  S  *  *  Y  I  L  L  L  A  L  Y  I  K  I  G  D  G  C  F  K  K  D  S  F  F  T  I  C  *  C  F  S  W  R  N  *  S  L  L  F  Y  Q   : V  I  C  G  V  H  G  K  Q  R  *  *  *  A  S  R  *  D  F  E  A  K  P  S  N  A  Y  *  Y  S  W  R  K  :  C  *  T  S  Q  E  F  S  C  I  Q  L  *  T  W  F  *  R  L  C  S  Q  V  D  *  E  T  G  F  *  N  I  * :   N  A  W  C  G  I  C  I  S  K  Y  *  E  K  P  A  Y  N  S  F  M  G  F  Y  G  A  Q  *  R  *  N  N  G  N  P  R  F  F  H  Q  E  P  S  *  C  N  H  W  F  H  *  Y  R :   N  L  A  *  V  S  K  F  *  G  H  P  H  A  S  S  A  C  W  M  E  R  T  M  P  I  R  G  S  I  Q  C  L  N  M  Q  Q  :  E  N  N  W  G  K  I  L  Y  E  W  L  C  S  *  R  R  *  K  D  H  V  Q  V  C  Q  G  Q  F  W  S  W  K  S  Y  S  F  N  C  C  W  A  L  C  S  *  Y  E  L  Q  R  F  G  I  W  R  S  Q  R  W  C  P  N  G  Q  D  S  S  V  Q  N  L  L  E  F  W  L  L  *  C  *  F  V  G  C  I  *  *  C  N  *  R  W  G  S  C  H  F  Y  I  F  G  P  R  C  S  P  R  R  L  F  *  *  C  N  F  C  G  V  I  S  C  C  *  P  W  D  T  C  S  G  L  R  W  K  *  R  N  L  W  F  S  H  K  F  S  S  L  D  D  H  S  C  S  Q  F  N  R  *  R  F  Y  I  *  C  F  T  R  K  *  S  S  T  H   : G  *  K  S  *  L  I  S  N  A  Y  I  C  K  N  H  T  C  F  *  S  L  C  W  I  L  H  S  L  S  I  Q  V  K  Q  K  :  L  L  L  R  *  F  F  E  *  N  *  G  Q  R  E  G  S  C  V  S  T  C  W  K  L  K  *  V  K  A  G  E  K  Q  Y  S  *  T  S  W  W  S  W  D  D  P  Y  *  *  S  R  Q  G  C  G  Y  S  L  L  H  S  S  S  N  C  W  A  K  D  W  K  K  D  P  S  L  H  *  *  Y  T  :  P  P  Y  C  K  N  S  L  C  *  N  C  F  G  S  S  T  C  S  S  S  N  S  I  F  F  K  R  S  *  F  S  N  T  R  N  F  E   : A  *  Y  Y  C  S  R  F  K  Y  P  G  S  M  V  P  S  N  V  *  V  E  V  Q  H  T  L  W  N  L  H  G  L  P  S  H  I  R  S  C  C  L  V  K  S  R  A  S  I  M  V  S  L  C  N  Q  I  S  H  H  D  N  S :   Q  T  I  R  Y  A  S  Q  T  H  N  S  R  S  *  R  E  E  G  *  S  I  *  F  W  F  W  I  C  *  P  H  E  S  P  Q  S  W  S  D  I  *  C  T  T  R  R  L  Q  S  I  S  L  F  N  W  L  *  R  E  I  S  A  S  N  Y  K  G  Q  Q  N  V  *  S  N  L  C  I  A  K  *  T  K  L  S  L  H  H  S  T  K  P  Q  K  Q  L  L  S  I  S  N  C  H  K  C  G  K  V  K  E  Y  L  Q  G  S  Y  I  C  T  K  G  Y  Q  C  Y  C  G  A  A  K  I  S  L  H  *  I  L  P  E  D  E  F  H  S  D  F  Q  S  G  C  T  Y  T  G  I  C  L  W  V  L  V  M  E  E  Q  K  N  M  G  N  I  S  T  C  C  Q  S  G  T  F  Q  Y  G  Y  C  G  I  V  Q  L  Q  C  Y  L  F  V  L  Y  K  V  S  N  K  I  L  Q  P  V  A  A  E  N  G  C  M  K  K  P  T  Q  N  S  *  K  N  T  C  N  *  *  Q  N  T  N  N  *  *  F  F  I  L  F  V  L  *  F  *  V  L  V  L  A  T  *  S  G  F  T  N  R  D  T  A  N  S  F  T  C  L  V  I  A  L  C  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135233" stop="135150"/>
                    <exon start="135059" stop="134962"/>
                    <exon start="134865" stop="134768"/>
                    <exon start="134676" stop="134518"/>
                    <exon start="133960" stop="133849"/>
                    <exon start="133763" stop="133241"/>
                    <exon start="133160" stop="133062"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGVSKKTLFLLFVSVFLGEISLCSSTKLYVVYMGSKDSDEHQDEILRQNHQMLTDIHGGNVEQAKSSHVYSYRHGFKGFAAKLTEKQASEISKMPGVVSVFPNTKRNLHTTHSWDFMGLSEDETMEIPGFSTKNQVNVIIGFIDTGIWPESPSFRDTHMPPVPAGWKGQCQSGEAFNASICNRKIIGARYYMSGYAAEEDEKIMFKSARDSSGHGSHTASTAAGRYVADMNYKGLASGGARGGAPMARIAVYKTCWSSGCYDVDLLAAFDDAIRDGVHVISISLGPDAPQGDYFSDAISVGSFHAVSRGILVVASVGNEGTSGSATNLAPWMITVAASSTDRDFTSDVLLGNRVQLTGESLSLSQMHTSAKIIPASEAYAGYFTPYQSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133061" stop="133054"/>
                    <exon start="132971" stop="132729"/>
                    <exon start="132640" stop="132526"/>
                    <exon start="132277" stop="132091"/>
                    <exon start="131881" stop="131319"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRSYCLDSSLNRTKAKGKVLVCRHAGSSSESKLEKSNIVKQAGGVGMILIDEADKGVAIPFSIPAATVGQKIGKKILAYINNTRLPTARILSAKTVLGAQPAPRVTAFSSRGPNSLTPEILKPDITAPGLNILAAWSPAMSRLKFNILSGTSMACPHISGVVALLKAVHPSWSPSAIKSAIMTTAKLSDMHHKPIIVDPEGKKANPFDFGSGFVNPTKVLNPGLIYDAQPEDYRAFLCSIGYDEKSLHLITRDNRTCDQTFASPNELNYPSITVPNLRNNYSVSRTVTNVGKSRSTYKAVIFAPKGINVTVVPRRLAFTRYYQKMNFTVTFKVAAPTQGYVFGSLSWRNKRTWVTSPLVVRVAHSNMGTVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="135536" e_stop="135150"/>
            <exon e_start="135059" e_stop="134962"/>
            <exon e_start="134865" e_stop="134768"/>
            <exon e_start="134676" e_stop="134518"/>
            <exon e_start="133960" e_stop="133849"/>
            <exon e_start="133763" e_stop="133241"/>
            <exon e_start="133160" e_stop="133054"/>
            <exon e_start="132971" e_stop="132526"/>
            <exon e_start="132277" e_stop="132091"/>
            <exon e_start="131881" e_stop="131053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.267" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.989" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="0.990"/>
          <exon-intron don_prob="0.980" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="135536" e_stop="135150" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.267" acc_prob="0.994">
            <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135059" e_stop="134962" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.932">
            <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="134865" e_stop="134768" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134676" e_stop="134518" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.850">
            <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="133960" e_stop="133849" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="133763" e_stop="133241" e_length="523"/>
          </exon>
          <intron i_serial="6" don_prob="0.904" acc_prob="0.766">
            <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="133160" e_stop="133054" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="133053" i_stop="132972" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="132971" e_stop="132526" e_length="446"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="132277" e_stop="132091" e_length="187"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="131881" e_stop="131053" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135536" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135533" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135350" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135261" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133924" stop="133849"/>
              <exon start="133763" stop="133314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133699" stop="133241"/>
              <exon start="133160" stop="133054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133698" stop="133241"/>
              <exon start="133160" stop="133081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133448" stop="133241"/>
              <exon start="133160" stop="133054"/>
              <exon start="132971" stop="132731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133156" stop="133054"/>
              <exon start="132971" stop="132526"/>
              <exon start="132277" stop="132170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132612" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132599" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132544" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132544" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132174" stop="132091"/>
              <exon start="131881" stop="131544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131663" stop="131053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131603" stop="131068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428334" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCATTTTCTTTTGTCTAAGCAATCGCGAAAAAAATTATTTAAGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTTAATGGAAATATATTTTGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAG : TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA : TGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA : AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG : GAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG : GAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG : GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAG : TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG : CCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG : CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGAGTGGCACATTCCAATATGGGTACTGTGGTATAGTTCAGCTGCAGTGCTATTTATTTGTGTTATATAAGGTAAGTAACAAGATATTGCAACCAGTAGCTGCTGAAAATGGTTGCATGAAGAAGCCAACACAAAATTCTTAGAAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTCTTTATTCTATTTGTCCTTTAGTTTTGAGTTTTGGTTCTTGCTACCTAGTCAGGTTTTACTAATAGGGATACTGCAAATTCTTTTACTTGTCTAGTAATTGCATTATGTATTGGC</gDNA_template>
            <first_frame> F  H  F  L  L  S  K  Q  S  R  K  K  L  F  K  R  S  N  M  I  I  *  N  I  S  *  F  Y  P  T  Q  Y  V  N  G  N  I  F  C  L  L  L  L  H  S  I  P  V  T  E  *  S  L  S  L  S  L  S  L  S  S  L  F  S  N  H  S  L  S  L  C  V  L  F  C  Y  K  K  P  H  L  F  F  F  H  L  V  V  D  N  T  F  F  Y  *  P  Y  T  S  R  *  E  M  G  V  S  K  K  T  L  F  L  L  F  V  S  V  F  L  G  E  I  S  L  C  S  S  T  K  :  L  Y  V  V  Y  M  G  S  K  D  S  D  E  H  Q  D  E  I  L  R  Q  N  H  Q  M  L  T  D  I  H  G  G  N :   V  E  Q  A  K  S  S  H  V  Y  S  Y  R  H  G  F  K  G  F  A  A  K  L  T  E  K  Q  A  S  E  I  S   : K  M  P  G  V  V  S  V  F  P  N  T  K  R  N  L  H  T  T  H  S  W  D  F  M  G  L  S  E  D  E  T  M  E  I  P  G  F  S  T  K  N  Q  V  N  V  I  I  G  F  I  D  T   : G  I  W  P  E  S  P  S  F  R  D  T  H  M  P  P  V  P  A  G  W  K  G  Q  C  Q  S  G  E  A  F  N  A  S  I  C  N  R :   K  I  I  G  A  R  Y  Y  M  S  G  Y  A  A  E  E  D  E  K  I  M  F  K  S  A  R  D  S  S  G  H  G  S  H  T  A  S  T  A  A  G  R  Y  V  A  D  M  N  Y  K  G  L  A  S  G  G  A  R  G  G  A  P  M  A  R  I  A  V  Y  K  T  C  W  S  S  G  C  Y  D  V  D  L  L  A  A  F  D  D  A  I  R  D  G  V  H  V  I  S  I  S  L  G  P  D  A  P  Q  G  D  Y  F  S  D  A  I  S  V  G  S  F  H  A  V  S  R  G  I  L  V  V  A  S  V  G  N  E  G  T  S  G  S  A  T  N  L  A  P  W  M  I  T  V  A  A  S  S  T  D  R  D  F  T  S  D  V  L  L  G  N  R  V  Q  L  T  :  G  E  S  L  S  L  S  Q  M  H  T  S  A  K  I  I  P  A  S  E  A  Y  A  G  Y  F  T  P  Y  Q  S  R  *  S  R  S :   Y  C  L  D  S  S  L  N  R  T  K  A  K  G  K  V  L  V  C  R  H  A  G  S  S  S  E  S  K  L  E  K  S  N  I  V  K  Q  A  G  G  V  G  M  I  L  I  D  E  A  D  K  G  V  A  I  P  F  S  I  P  A  A  T  V  G  Q  K  I  G  K  K  I  L  A  Y  I  N  N  T  R  F  T  S  L  L  V  A  V  D  I  C  F  Y  C  S  L  M  L  L  A  I  I  S  S  L  L  Y  L  Q  P  P  Y  C  K  N  S  L  C  *  N  C  F  G  S  S  T  C  S  S  S  N  S  I  F  F  K  R  S  *  F  S  N  T  R  N  F  E   : A  *  Y  Y  C  S  R  F  K  Y  P  G  S  M  V  P  S  N  V  *  V  E  V  Q  H  T  L  W  N  L  H  G  L  P  S  H  I  R  S  C  C  L  V  K  S  R  A  S  I  M  V  S  L  C  N  Q  I  S  H  H  D  N  S :   Q  T  I  R  Y  A  S  Q  T  H  N  S  R  S  *  R  E  E  G  *  S  I  *  F  W  F  W  I  C  *  P  H  E  S  P  Q  S  W  S  D  I  *  C  T  T  R  R  L  Q  S  I  S  L  F  N  W  L  *  R  E  I  S  A  S  N  Y  K  G  Q  Q  N  V  *  S  N  L  C  I  A  K  *  T  K  L  S  L  H  H  S  T  K  P  Q  K  Q  L  L  S  I  S  N  C  H  K  C  G  K  V  K  E  Y  L  Q  G  S  Y  I  C  T  K  G  Y  Q  C  Y  C  G  A  A  K  I  S  L  H  *  I  L  P  E  D  E  F  H  S  D  F  Q  S  G  C  T  Y  T  G  I  C  L  W  V  L  V  M  E  E  Q  K  N  M  G  N  I  S  T  C  C  Q  S  G  T  F  Q  Y  G  Y  C  G  I  V  Q  L  Q  C  Y  L  F  V  L  Y  K  V  S  N  K  I  L  Q  P  V  A  A  E  N  G  C  M  K  K  P  T  Q  N  S  *  K  N  T  C  N  *  *  Q  N  T  N  N  *  *  F  F  I  L  F  V  L  *  F  *  V  L  V  L  A  T  *  S  G  F  T  N  R  D  T  A  N  S  F  T  C  L  V  I  A  L  C  I  G </first_frame>
            <second_frame>  S  I  F  F  C  L  S  N  R  E  K  N  Y  L  R  D  R  I  *  L  Y  E  I  S  L  N  F  I  R  R  S  T  L  M  E  I  Y  F  V  Y  Y  Y  Y  T  V  Y  L  *  L  N  N  L  F  L  F  L  S  P  S  P  L  Y  F  Q  I  I  L  S  L  C  V  S  C  S  A  I  K  N  L  I  F  F  F  F  I  L  *  L  I  I  H  S  F  T  S  L  I  H  Q  D  R  R  W  V  F  Q  K  R  L  F  F  Y  Y  L  L  V  F  F  L  E  K  L  V  S  A  L  L  P  S :   Y  M  W  C  T  W  E  A  K  I  V  M  S  I  K  M  R  F  *  G  K  T  I  K  C  L  L  I  F  M  E  E   : M  L  N  K  P  R  V  L  M  Y  T  V  I  D  M  V  L  K  A  L  Q  P  S  *  L  R  N  R  L  L  K  Y  L  :  K  C  L  V  W  Y  L  Y  F  Q  I  L  R  E  T  C  I  Q  L  I  H  G  I  L  W  G  S  V  K  M  K  Q  W  K  S  Q  V  F  P  P  R  T  K  L  M  *  S  L  V  S  L  I  Q  :  E  F  G  L  S  L  Q  V  L  G  T  P  T  C  L  Q  C  L  L  D  G  K  D  N  A  N  Q  G  K  H  S  M  P  Q  Y  A  T   : G  K  *  L  G  Q  D  I  I  *  V  A  M  Q  L  K  K  M  K  R  S  C  S  S  L  P  G  T  V  L  V  M  E  V  I  Q  L  Q  L  L  L  G  V  M  *  L  I  *  I  T  K  V  W  H  L  E  E  P  E  V  V  P  Q  W  P  G  *  Q  C  T  K  P  A  G  V  L  V  A  M  M  L  I  C  W  L  H  L  M  M  Q  L  E  M  G  F  M  S  F  L  Y  L  W  A  Q  M  L  P  K  E  I  I  L  V  M  Q  F  L  W  G  H  F  M  L  L  A  V  G  Y  L  *  W  P  P  L  E  M  K  E  P  L  V  Q  P  Q  I  *  L  L  G  *  S  Q  L  Q  P  V  Q  P  I  E  I  L  H  L  M  F  Y  *  E  I  E  F  N  S  R :   V  K  V  L  A  Y  L  K  C  I  H  L  Q  K  S  Y  L  L  L  K  L  M  L  D  T  S  L  L  I  N  P  G  E  A  E   : V  I  A  *  I  V  L  *  I  E  L  R  P  K  G  R  F  L  C  V  D  M  L  E  A  Q  V  S  Q  S  W  R  K  A  I  *  L  N  K  L  V  E  L  G  *  S  L  L  M  K  Q  T  R  V  W  L  F  P  S  P  F  Q  Q  Q  L  L  G  K  R  L  E  K  R  S  *  L  T  L  I  I  H  G  S  L  L  C  *  W  L  L  I  F  V  F  I  V  L  *  C  C  *  Q  S  S  H  L  F  Y  I  Y  S  L  P  T  A  R  I  L  S  A  K  T  V  L  G  A  Q  P  A  P  R  V  T  A  F  S  S  R  G  P  N  S  L  T  P  E  I  L  K  :  P  D  I  T  A  P  G  L  N  I  L  A  A  W  S  P  A  M  S  R  L  K  F  N  I  L  S  G  T  S  M  A  C  P  H  I  S  G  V  V  A  L  L  K  A  V  H  P  S  W  S  P  S  A  I  K  S  A  I  M  T  T   : A  K  L  S  D  M  H  H  K  P  I  I  V  D  P  E  G  K  K  A  N  P  F  D  F  G  S  G  F  V  N  P  T  K  V  L  N  P  G  L  I  Y  D  A  Q  P  E  D  Y  R  A  F  L  C  S  I  G  Y  D  E  K  S  L  H  L  I  T  R  D  N  R  T  C  D  Q  T  F  A  S  P  N  E  L  N  Y  P  S  I  T  V  P  N  L  R  N  N  Y  S  V  S  R  T  V  T  N  V  G  K  S  R  S  T  Y  K  A  V  I  F  A  P  K  G  I  N  V  T  V  V  P  R  R  L  A  F  T  R  Y  Y  Q  K  M  N  F  T  V  T  F  K  V  A  A  P  T  Q  G  Y  V  F  G  S  L  S  W  R  N  K  R  T  W  V  T  S  P  L  V  V  R  V  A  H  S  N  M  G  T  V  V  *  F  S  C  S  A  I  Y  L  C  Y  I  R  *  V  T  R  Y  C  N  Q  *  L  L  K  M  V  A  *  R  S  Q  H  K  I  L  R  R  I  H  V  I  S  S  R  I  Q  I  I  S  N  S  L  F  Y  L  S  F  S  F  E  F  W  F  L  L  P  S  Q  V  L  L  I  G  I  L  Q  I  L  L  L  V  *  *  L  H  Y  V  L   </second_frame>
            <third_frame>   P  F  S  F  V  *  A  I  A  K  K  I  I  *  E  I  E  Y  D  Y  M  K  Y  L  L  I  L  S  D  A  V  R  *  W  K  Y  I  L  S  T  T  I  T  Q  Y  T  C  D  *  I  I  S  F  S  F  S  L  P  L  L  F  I  F  K  S  F  S  L  S  V  C  L  V  L  L  *  K  T  S  S  F  F  F  S  S  C  S  *  *  Y  I  L  L  L  A  L  Y  I  K  I  G  D  G  C  F  K  K  D  S  F  F  T  I  C  *  C  F  S  W  R  N  *  S  L  L  F  Y  Q   : V  I  C  G  V  H  G  K  Q  R  *  *  *  A  S  R  *  D  F  E  A  K  P  S  N  A  Y  *  Y  S  W  R  K  :  C  *  T  S  Q  E  F  S  C  I  Q  L  *  T  W  F  *  R  L  C  S  Q  V  D  *  E  T  G  F  *  N  I  * :   N  A  W  C  G  I  C  I  S  K  Y  *  E  K  P  A  Y  N  S  F  M  G  F  Y  G  A  Q  *  R  *  N  N  G  N  P  R  F  F  H  Q  E  P  S  *  C  N  H  W  F  H  *  Y  R :   N  L  A  *  V  S  K  F  *  G  H  P  H  A  S  S  A  C  W  M  E  R  T  M  P  I  R  G  S  I  Q  C  L  N  M  Q  Q  :  E  N  N  W  G  K  I  L  Y  E  W  L  C  S  *  R  R  *  K  D  H  V  Q  V  C  Q  G  Q  F  W  S  W  K  S  Y  S  F  N  C  C  W  A  L  C  S  *  Y  E  L  Q  R  F  G  I  W  R  S  Q  R  W  C  P  N  G  Q  D  S  S  V  Q  N  L  L  E  F  W  L  L  *  C  *  F  V  G  C  I  *  *  C  N  *  R  W  G  S  C  H  F  Y  I  F  G  P  R  C  S  P  R  R  L  F  *  *  C  N  F  C  G  V  I  S  C  C  *  P  W  D  T  C  S  G  L  R  W  K  *  R  N  L  W  F  S  H  K  F  S  S  L  D  D  H  S  C  S  Q  F  N  R  *  R  F  Y  I  *  C  F  T  R  K  *  S  S  T  H   : G  *  K  S  *  L  I  S  N  A  Y  I  C  K  N  H  T  C  F  *  S  L  C  W  I  L  H  S  L  S  I  Q  V  K  Q  K  :  L  L  L  R  *  F  F  E  *  N  *  G  Q  R  E  G  S  C  V  S  T  C  W  K  L  K  *  V  K  A  G  E  K  Q  Y  S  *  T  S  W  W  S  W  D  D  P  Y  *  *  S  R  Q  G  C  G  Y  S  L  L  H  S  S  S  N  C  W  A  K  D  W  K  K  D  P  S  L  H  *  *  Y  T  V  H  F  F  V  S  G  C  *  Y  L  F  L  L  F  F  D  V  V  S  N  H  L  I  S  F  I  F  T  A  S  L  L  Q  E  F  S  L  L  K  L  F  W  E  L  N  L  L  L  E  *  Q  H  F  L  Q  E  V  L  I  L  *  H  Q  K  F  *  S :   L  I  L  L  L  P  V  *  I  S  W  Q  H  G  P  Q  Q  C  L  G  *  S  S  T  Y  S  L  E  P  P  W  L  A  L  T  Y  Q  E  L  L  P  C  *  K  P  C  I  H  H  G  L  P  L  Q  S  N  Q  P  S  *  Q  Q  :  P  N  Y  Q  I  C  I  T  N  P  *  *  *  I  L  K  G  R  R  L  I  H  L  I  L  V  L  D  L  L  T  P  R  K  S  S  I  L  V  *  Y  M  M  H  N  Q  K  I  T  E  H  F  F  V  Q  L  V  M  T  R  N  L  C  I  *  L  Q  G  T  T  E  R  V  I  K  P  L  H  R  Q  M  N  *  I  I  P  P  S  Q  Y  Q  T  S  E  T  I  T  Q  Y  L  E  L  S  Q  M  W  E  S  Q  G  V  L  T  R  Q  L  Y  L  H  Q  R  V  S  M  L  L  W  C  R  E  D  *  P  S  L  D  I  T  R  R  *  I  S  Q  *  L  S  K  W  L  H  L  H  R  D  M  S  L  G  P  C  H  G  G  T  K  E  H  G  *  H  L  H  L  L  S  E  W  H  I  P  I  W  V  L  W  Y  S  S  A  A  V  L  F  I  C  V  I  *  G  K  *  Q  D  I  A  T  S  S  C  *  K  W  L  H  E  E  A  N  T  K  F  L  E  E  Y  M  *  L  V  A  E  Y  K  *  L  V  I  L  Y  S  I  C  P  L  V  L  S  F  G  S  C  Y  L  V  R  F  Y  *  *  G  Y  C  K  F  F  Y  L  S  S  N  C  I  M  Y  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135233" stop="135150"/>
                    <exon start="135059" stop="134962"/>
                    <exon start="134865" stop="134768"/>
                    <exon start="134676" stop="134518"/>
                    <exon start="133960" stop="133849"/>
                    <exon start="133763" stop="133241"/>
                    <exon start="133160" stop="133062"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGVSKKTLFLLFVSVFLGEISLCSSTKLYVVYMGSKDSDEHQDEILRQNHQMLTDIHGGNVEQAKSSHVYSYRHGFKGFAAKLTEKQASEISKMPGVVSVFPNTKRNLHTTHSWDFMGLSEDETMEIPGFSTKNQVNVIIGFIDTGIWPESPSFRDTHMPPVPAGWKGQCQSGEAFNASICNRKIIGARYYMSGYAAEEDEKIMFKSARDSSGHGSHTASTAAGRYVADMNYKGLASGGARGGAPMARIAVYKTCWSSGCYDVDLLAAFDDAIRDGVHVISISLGPDAPQGDYFSDAISVGSFHAVSRGILVVASVGNEGTSGSATNLAPWMITVAASSTDRDFTSDVLLGNRVQLTGESLSLSQMHTSAKIIPASEAYAGYFTPYQSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132669" stop="132526"/>
                    <exon start="132277" stop="132091"/>
                    <exon start="131881" stop="131319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSHLFYIYSLPTARILSAKTVLGAQPAPRVTAFSSRGPNSLTPEILKPDITAPGLNILAAWSPAMSRLKFNILSGTSMACPHISGVVALLKAVHPSWSPSAIKSAIMTTAKLSDMHHKPIIVDPEGKKANPFDFGSGFVNPTKVLNPGLIYDAQPEDYRAFLCSIGYDEKSLHLITRDNRTCDQTFASPNELNYPSITVPNLRNNYSVSRTVTNVGKSRSTYKAVIFAPKGINVTVVPRRLAFTRYYQKMNFTVTFKVAAPTQGYVFGSLSWRNKRTWVTSPLVVRVAHSNMGTVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="135536" e_stop="135150"/>
            <exon e_start="135059" e_stop="134962"/>
            <exon e_start="134865" e_stop="134768"/>
            <exon e_start="134676" e_stop="134518"/>
            <exon e_start="133960" e_stop="133849"/>
            <exon e_start="133763" e_stop="133241"/>
            <exon e_start="133160" e_stop="133066"/>
            <exon e_start="132971" e_stop="132526"/>
            <exon e_start="132277" e_stop="132091"/>
            <exon e_start="131881" e_stop="131053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.267" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.989" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="0.990"/>
          <exon-intron don_prob="0.980" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="0.960"/>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="135536" e_stop="135150" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.267" acc_prob="0.994">
            <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135059" e_stop="134962" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.932">
            <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="134865" e_stop="134768" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134676" e_stop="134518" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.850">
            <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="133960" e_stop="133849" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="133763" e_stop="133241" e_length="523"/>
          </exon>
          <intron i_serial="6" don_prob="0.904" acc_prob="0.766">
            <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="133160" e_stop="133066" e_length="95"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.000">
            <gDNA_intron_boundary i_start="133065" i_stop="132972" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="0.960">
            <gDNA_exon_boundary e_start="132971" e_stop="132526" e_length="446"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="132525" i_stop="132278" i_length="248"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="132277" e_stop="132091" e_length="187"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="131881" e_stop="131053" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135536" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135533" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135350" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135261" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133924" stop="133849"/>
              <exon start="133763" stop="133314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133698" stop="133241"/>
              <exon start="133160" stop="133081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133160" stop="133066"/>
              <exon start="132971" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133160" stop="133066"/>
              <exon start="132971" stop="132526"/>
              <exon start="132277" stop="132188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132612" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132599" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132544" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132544" stop="132526"/>
              <exon start="132277" stop="132091"/>
              <exon start="131881" stop="131751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132174" stop="132091"/>
              <exon start="131881" stop="131544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131663" stop="131053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131603" stop="131068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428334" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCATTTTCTTTTGTCTAAGCAATCGCGAAAAAAATTATTTAAGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTTAATGGAAATATATTTTGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAG : TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA : TGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA : AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG : GAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG : GAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG : GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAG : TTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGCTCAAGTGAGTCAAAGCTGGAGAAAAGCAATATAGTTAAACAAGCTGGTGGAGTTGGGATGATCCTTATTGATGAAGCAGACAAGGGTGTGGCTATTCCCTTCTCCATTCCAGCAGCAACTGTTGGGCAAAAGATTGGAAAAAAGATCCTAGCTTACATTAATAATACACGGTTCACTTCTTTGTTAGTGGCTGTTGATATTTGTTTTTATTGTTCTTTGATGTTGTTAGCAATCATCTCATCTCTTTTATATTTACAGCCTCCCTACTGCAAGAATTCTCTCTGCTAAAACTGTTTTGGGAGCTCAACCTGCTCCTCGAGTAACAGCATTTTCTTCAAGAGGTCCTAATTCTCTAACACCAGAAATTTTGAAG : CCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG : CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGAGTGGCACATTCCAATATGGGTACTGTGGTATAGTTCAGCTGCAGTGCTATTTATTTGTGTTATATAAGGTAAGTAACAAGATATTGCAACCAGTAGCTGCTGAAAATGGTTGCATGAAGAAGCCAACACAAAATTCTTAGAAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTCTTTATTCTATTTGTCCTTTAGTTTTGAGTTTTGGTTCTTGCTACCTAGTCAGGTTTTACTAATAGGGATACTGCAAATTCTTTTACTTGTCTAGTAATTGCATTATGTATTGGC</gDNA_template>
            <first_frame> F  H  F  L  L  S  K  Q  S  R  K  K  L  F  K  R  S  N  M  I  I  *  N  I  S  *  F  Y  P  T  Q  Y  V  N  G  N  I  F  C  L  L  L  L  H  S  I  P  V  T  E  *  S  L  S  L  S  L  S  L  S  S  L  F  S  N  H  S  L  S  L  C  V  L  F  C  Y  K  K  P  H  L  F  F  F  H  L  V  V  D  N  T  F  F  Y  *  P  Y  T  S  R  *  E  M  G  V  S  K  K  T  L  F  L  L  F  V  S  V  F  L  G  E  I  S  L  C  S  S  T  K  :  L  Y  V  V  Y  M  G  S  K  D  S  D  E  H  Q  D  E  I  L  R  Q  N  H  Q  M  L  T  D  I  H  G  G  N :   V  E  Q  A  K  S  S  H  V  Y  S  Y  R  H  G  F  K  G  F  A  A  K  L  T  E  K  Q  A  S  E  I  S   : K  M  P  G  V  V  S  V  F  P  N  T  K  R  N  L  H  T  T  H  S  W  D  F  M  G  L  S  E  D  E  T  M  E  I  P  G  F  S  T  K  N  Q  V  N  V  I  I  G  F  I  D  T   : G  I  W  P  E  S  P  S  F  R  D  T  H  M  P  P  V  P  A  G  W  K  G  Q  C  Q  S  G  E  A  F  N  A  S  I  C  N  R :   K  I  I  G  A  R  Y  Y  M  S  G  Y  A  A  E  E  D  E  K  I  M  F  K  S  A  R  D  S  S  G  H  G  S  H  T  A  S  T  A  A  G  R  Y  V  A  D  M  N  Y  K  G  L  A  S  G  G  A  R  G  G  A  P  M  A  R  I  A  V  Y  K  T  C  W  S  S  G  C  Y  D  V  D  L  L  A  A  F  D  D  A  I  R  D  G  V  H  V  I  S  I  S  L  G  P  D  A  P  Q  G  D  Y  F  S  D  A  I  S  V  G  S  F  H  A  V  S  R  G  I  L  V  V  A  S  V  G  N  E  G  T  S  G  S  A  T  N  L  A  P  W  M  I  T  V  A  A  S  S  T  D  R  D  F  T  S  D  V  L  L  G  N  R  V  Q  L  T  :  G  E  S  L  S  L  S  Q  M  H  T  S  A  K  I  I  P  A  S  E  A  Y  A  G  Y  F  T  P  Y  Q  S  S :   Y  C  L  D  S  S  L  N  R  T  K  A  K  G  K  V  L  V  C  R  H  A  G  S  S  S  E  S  K  L  E  K  S  N  I  V  K  Q  A  G  G  V  G  M  I  L  I  D  E  A  D  K  G  V  A  I  P  F  S  I  P  A  A  T  V  G  Q  K  I  G  K  K  I  L  A  Y  I  N  N  T  R  F  T  S  L  L  V  A  V  D  I  C  F  Y  C  S  L  M  L  L  A  I  I  S  S  L  L  Y  L  Q  P  P  Y  C  K  N  S  L  C  *  N  C  F  G  S  S  T  C  S  S  S  N  S  I  F  F  K  R  S  *  F  S  N  T  R  N  F  E   : A  *  Y  Y  C  S  R  F  K  Y  P  G  S  M  V  P  S  N  V  *  V  E  V  Q  H  T  L  W  N  L  H  G  L  P  S  H  I  R  S  C  C  L  V  K  S  R  A  S  I  M  V  S  L  C  N  Q  I  S  H  H  D  N  S :   Q  T  I  R  Y  A  S  Q  T  H  N  S  R  S  *  R  E  E  G  *  S  I  *  F  W  F  W  I  C  *  P  H  E  S  P  Q  S  W  S  D  I  *  C  T  T  R  R  L  Q  S  I  S  L  F  N  W  L  *  R  E  I  S  A  S  N  Y  K  G  Q  Q  N  V  *  S  N  L  C  I  A  K  *  T  K  L  S  L  H  H  S  T  K  P  Q  K  Q  L  L  S  I  S  N  C  H  K  C  G  K  V  K  E  Y  L  Q  G  S  Y  I  C  T  K  G  Y  Q  C  Y  C  G  A  A  K  I  S  L  H  *  I  L  P  E  D  E  F  H  S  D  F  Q  S  G  C  T  Y  T  G  I  C  L  W  V  L  V  M  E  E  Q  K  N  M  G  N  I  S  T  C  C  Q  S  G  T  F  Q  Y  G  Y  C  G  I  V  Q  L  Q  C  Y  L  F  V  L  Y  K  V  S  N  K  I  L  Q  P  V  A  A  E  N  G  C  M  K  K  P  T  Q  N  S  *  K  N  T  C  N  *  *  Q  N  T  N  N  *  *  F  F  I  L  F  V  L  *  F  *  V  L  V  L  A  T  *  S  G  F  T  N  R  D  T  A  N  S  F  T  C  L  V  I  A  L  C  I  G </first_frame>
            <second_frame>  S  I  F  F  C  L  S  N  R  E  K  N  Y  L  R  D  R  I  *  L  Y  E  I  S  L  N  F  I  R  R  S  T  L  M  E  I  Y  F  V  Y  Y  Y  Y  T  V  Y  L  *  L  N  N  L  F  L  F  L  S  P  S  P  L  Y  F  Q  I  I  L  S  L  C  V  S  C  S  A  I  K  N  L  I  F  F  F  F  I  L  *  L  I  I  H  S  F  T  S  L  I  H  Q  D  R  R  W  V  F  Q  K  R  L  F  F  Y  Y  L  L  V  F  F  L  E  K  L  V  S  A  L  L  P  S :   Y  M  W  C  T  W  E  A  K  I  V  M  S  I  K  M  R  F  *  G  K  T  I  K  C  L  L  I  F  M  E  E   : M  L  N  K  P  R  V  L  M  Y  T  V  I  D  M  V  L  K  A  L  Q  P  S  *  L  R  N  R  L  L  K  Y  L  :  K  C  L  V  W  Y  L  Y  F  Q  I  L  R  E  T  C  I  Q  L  I  H  G  I  L  W  G  S  V  K  M  K  Q  W  K  S  Q  V  F  P  P  R  T  K  L  M  *  S  L  V  S  L  I  Q  :  E  F  G  L  S  L  Q  V  L  G  T  P  T  C  L  Q  C  L  L  D  G  K  D  N  A  N  Q  G  K  H  S  M  P  Q  Y  A  T   : G  K  *  L  G  Q  D  I  I  *  V  A  M  Q  L  K  K  M  K  R  S  C  S  S  L  P  G  T  V  L  V  M  E  V  I  Q  L  Q  L  L  L  G  V  M  *  L  I  *  I  T  K  V  W  H  L  E  E  P  E  V  V  P  Q  W  P  G  *  Q  C  T  K  P  A  G  V  L  V  A  M  M  L  I  C  W  L  H  L  M  M  Q  L  E  M  G  F  M  S  F  L  Y  L  W  A  Q  M  L  P  K  E  I  I  L  V  M  Q  F  L  W  G  H  F  M  L  L  A  V  G  Y  L  *  W  P  P  L  E  M  K  E  P  L  V  Q  P  Q  I  *  L  L  G  *  S  Q  L  Q  P  V  Q  P  I  E  I  L  H  L  M  F  Y  *  E  I  E  F  N  S  R :   V  K  V  L  A  Y  L  K  C  I  H  L  Q  K  S  Y  L  L  L  K  L  M  L  D  T  S  L  L  I  N  P   : V  I  A  *  I  V  L  *  I  E  L  R  P  K  G  R  F  L  C  V  D  M  L  E  A  Q  V  S  Q  S  W  R  K  A  I  *  L  N  K  L  V  E  L  G  *  S  L  L  M  K  Q  T  R  V  W  L  F  P  S  P  F  Q  Q  Q  L  L  G  K  R  L  E  K  R  S  *  L  T  L  I  I  H  G  S  L  L  C  *  W  L  L  I  F  V  F  I  V  L  *  C  C  *  Q  S  S  H  L  F  Y  I  Y  S  L  P  T  A  R  I  L  S  A  K  T  V  L  G  A  Q  P  A  P  R  V  T  A  F  S  S  R  G  P  N  S  L  T  P  E  I  L  K  :  P  D  I  T  A  P  G  L  N  I  L  A  A  W  S  P  A  M  S  R  L  K  F  N  I  L  S  G  T  S  M  A  C  P  H  I  S  G  V  V  A  L  L  K  A  V  H  P  S  W  S  P  S  A  I  K  S  A  I  M  T  T   : A  K  L  S  D  M  H  H  K  P  I  I  V  D  P  E  G  K  K  A  N  P  F  D  F  G  S  G  F  V  N  P  T  K  V  L  N  P  G  L  I  Y  D  A  Q  P  E  D  Y  R  A  F  L  C  S  I  G  Y  D  E  K  S  L  H  L  I  T  R  D  N  R  T  C  D  Q  T  F  A  S  P  N  E  L  N  Y  P  S  I  T  V  P  N  L  R  N  N  Y  S  V  S  R  T  V  T  N  V  G  K  S  R  S  T  Y  K  A  V  I  F  A  P  K  G  I  N  V  T  V  V  P  R  R  L  A  F  T  R  Y  Y  Q  K  M  N  F  T  V  T  F  K  V  A  A  P  T  Q  G  Y  V  F  G  S  L  S  W  R  N  K  R  T  W  V  T  S  P  L  V  V  R  V  A  H  S  N  M  G  T  V  V  *  F  S  C  S  A  I  Y  L  C  Y  I  R  *  V  T  R  Y  C  N  Q  *  L  L  K  M  V  A  *  R  S  Q  H  K  I  L  R  R  I  H  V  I  S  S  R  I  Q  I  I  S  N  S  L  F  Y  L  S  F  S  F  E  F  W  F  L  L  P  S  Q  V  L  L  I  G  I  L  Q  I  L  L  L  V  *  *  L  H  Y  V  L   </second_frame>
            <third_frame>   P  F  S  F  V  *  A  I  A  K  K  I  I  *  E  I  E  Y  D  Y  M  K  Y  L  L  I  L  S  D  A  V  R  *  W  K  Y  I  L  S  T  T  I  T  Q  Y  T  C  D  *  I  I  S  F  S  F  S  L  P  L  L  F  I  F  K  S  F  S  L  S  V  C  L  V  L  L  *  K  T  S  S  F  F  F  S  S  C  S  *  *  Y  I  L  L  L  A  L  Y  I  K  I  G  D  G  C  F  K  K  D  S  F  F  T  I  C  *  C  F  S  W  R  N  *  S  L  L  F  Y  Q   : V  I  C  G  V  H  G  K  Q  R  *  *  *  A  S  R  *  D  F  E  A  K  P  S  N  A  Y  *  Y  S  W  R  K  :  C  *  T  S  Q  E  F  S  C  I  Q  L  *  T  W  F  *  R  L  C  S  Q  V  D  *  E  T  G  F  *  N  I  * :   N  A  W  C  G  I  C  I  S  K  Y  *  E  K  P  A  Y  N  S  F  M  G  F  Y  G  A  Q  *  R  *  N  N  G  N  P  R  F  F  H  Q  E  P  S  *  C  N  H  W  F  H  *  Y  R :   N  L  A  *  V  S  K  F  *  G  H  P  H  A  S  S  A  C  W  M  E  R  T  M  P  I  R  G  S  I  Q  C  L  N  M  Q  Q  :  E  N  N  W  G  K  I  L  Y  E  W  L  C  S  *  R  R  *  K  D  H  V  Q  V  C  Q  G  Q  F  W  S  W  K  S  Y  S  F  N  C  C  W  A  L  C  S  *  Y  E  L  Q  R  F  G  I  W  R  S  Q  R  W  C  P  N  G  Q  D  S  S  V  Q  N  L  L  E  F  W  L  L  *  C  *  F  V  G  C  I  *  *  C  N  *  R  W  G  S  C  H  F  Y  I  F  G  P  R  C  S  P  R  R  L  F  *  *  C  N  F  C  G  V  I  S  C  C  *  P  W  D  T  C  S  G  L  R  W  K  *  R  N  L  W  F  S  H  K  F  S  S  L  D  D  H  S  C  S  Q  F  N  R  *  R  F  Y  I  *  C  F  T  R  K  *  S  S  T  H   : G  *  K  S  *  L  I  S  N  A  Y  I  C  K  N  H  T  C  F  *  S  L  C  W  I  L  H  S  L  S  I  Q  :  L  L  L  R  *  F  F  E  *  N  *  G  Q  R  E  G  S  C  V  S  T  C  W  K  L  K  *  V  K  A  G  E  K  Q  Y  S  *  T  S  W  W  S  W  D  D  P  Y  *  *  S  R  Q  G  C  G  Y  S  L  L  H  S  S  S  N  C  W  A  K  D  W  K  K  D  P  S  L  H  *  *  Y  T  V  H  F  F  V  S  G  C  *  Y  L  F  L  L  F  F  D  V  V  S  N  H  L  I  S  F  I  F  T  A  S  L  L  Q  E  F  S  L  L  K  L  F  W  E  L  N  L  L  L  E  *  Q  H  F  L  Q  E  V  L  I  L  *  H  Q  K  F  *  S :   L  I  L  L  L  P  V  *  I  S  W  Q  H  G  P  Q  Q  C  L  G  *  S  S  T  Y  S  L  E  P  P  W  L  A  L  T  Y  Q  E  L  L  P  C  *  K  P  C  I  H  H  G  L  P  L  Q  S  N  Q  P  S  *  Q  Q  :  P  N  Y  Q  I  C  I  T  N  P  *  *  *  I  L  K  G  R  R  L  I  H  L  I  L  V  L  D  L  L  T  P  R  K  S  S  I  L  V  *  Y  M  M  H  N  Q  K  I  T  E  H  F  F  V  Q  L  V  M  T  R  N  L  C  I  *  L  Q  G  T  T  E  R  V  I  K  P  L  H  R  Q  M  N  *  I  I  P  P  S  Q  Y  Q  T  S  E  T  I  T  Q  Y  L  E  L  S  Q  M  W  E  S  Q  G  V  L  T  R  Q  L  Y  L  H  Q  R  V  S  M  L  L  W  C  R  E  D  *  P  S  L  D  I  T  R  R  *  I  S  Q  *  L  S  K  W  L  H  L  H  R  D  M  S  L  G  P  C  H  G  G  T  K  E  H  G  *  H  L  H  L  L  S  E  W  H  I  P  I  W  V  L  W  Y  S  S  A  A  V  L  F  I  C  V  I  *  G  K  *  Q  D  I  A  T  S  S  C  *  K  W  L  H  E  E  A  N  T  K  F  L  E  E  Y  M  *  L  V  A  E  Y  K  *  L  V  I  L  Y  S  I  C  P  L  V  L  S  F  G  S  C  Y  L  V  R  F  Y  *  *  G  Y  C  K  F  F  Y  L  S  S  N  C  I  M  Y  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135233" stop="135150"/>
                    <exon start="135059" stop="134962"/>
                    <exon start="134865" stop="134768"/>
                    <exon start="134676" stop="134518"/>
                    <exon start="133960" stop="133849"/>
                    <exon start="133763" stop="133241"/>
                    <exon start="133160" stop="133066"/>
                    <exon start="132971" stop="132611"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1527</number_coding_nucleotides>
                  <number_encoded_amino_acids>509</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGVSKKTLFLLFVSVFLGEISLCSSTKLYVVYMGSKDSDEHQDEILRQNHQMLTDIHGGNVEQAKSSHVYSYRHGFKGFAAKLTEKQASEISKMPGVVSVFPNTKRNLHTTHSWDFMGLSEDETMEIPGFSTKNQVNVIIGFIDTGIWPESPSFRDTHMPPVPAGWKGQCQSGEAFNASICNRKIIGARYYMSGYAAEEDEKIMFKSARDSSGHGSHTASTAAGRYVADMNYKGLASGGARGGAPMARIAVYKTCWSSGCYDVDLLAAFDDAIRDGVHVISISLGPDAPQGDYFSDAISVGSFHAVSRGILVVASVGNEGTSGSATNLAPWMITVAASSTDRDFTSDVLLGNRVQLTGESLSLSQMHTSAKIIPASEAYAGYFTPYQSSYCLDSSLNRTKAKGKVLVCRHAGSSSESKLEKSNIVKQAGGVGMILIDEADKGVAIPFSIPAATVGQKIGKKILAYINNTRFTSLLVAVDICFYCSLMLLAIISSLLYLQPPYCKNSLC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131475" stop="131212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILPEDEFHSDFQSGCTYTGICLWVLVMEEQKNMGNISTCCQSGTFQYGYCGIVQLQCYLFVLYKVSNKILQPVAAENGCMKKPTQNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="135536" e_stop="135150"/>
            <exon e_start="135059" e_stop="134962"/>
            <exon e_start="134865" e_stop="134768"/>
            <exon e_start="134676" e_stop="134518"/>
            <exon e_start="133960" e_stop="133849"/>
            <exon e_start="133763" e_stop="133241"/>
            <exon e_start="133160" e_stop="132899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.267" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.989" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="0.990"/>
          <exon-intron don_prob="0.980" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.766" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="135536" e_stop="135150" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.267" acc_prob="0.994">
            <gDNA_intron_boundary i_start="135149" i_stop="135060" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135059" e_stop="134962" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.932">
            <gDNA_intron_boundary i_start="134961" i_stop="134866" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="134865" e_stop="134768" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="134767" i_stop="134677" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134676" e_stop="134518" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.850">
            <gDNA_intron_boundary i_start="134517" i_stop="133961" i_length="557"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="133960" e_stop="133849" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="133848" i_stop="133764" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="133763" e_stop="133241" e_length="523"/>
          </exon>
          <intron i_serial="6" don_prob="0.904" acc_prob="0.766">
            <gDNA_intron_boundary i_start="133240" i_stop="133161" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="133160" e_stop="132899" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135536" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135533" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135350" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135321" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135261" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135232" stop="135150"/>
              <exon start="135059" stop="134962"/>
              <exon start="134865" stop="134768"/>
              <exon start="134676" stop="134518"/>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133960" stop="133849"/>
              <exon start="133763" stop="133375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133924" stop="133849"/>
              <exon start="133763" stop="133314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133699" stop="133241"/>
              <exon start="133160" stop="133054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133698" stop="133241"/>
              <exon start="133160" stop="133081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133540" stop="133241"/>
              <exon start="133160" stop="132899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCATTTTCTTTTGTCTAAGCAATCGCGAAAAAAATTATTTAAGAGATCGAATATGATTATATGAAATATCTCTTAATTTTATCCGACGCAGTACGTTAATGGAAATATATTTTGTCTACTACTATTACACAGTATACCTGTGACTGAATAATCTCTTTCTCTTTCTCTCTCCCTCTCCTCTTTATTTTCAAATCATTCTCTCTCTCTGTGTGTCTTGTTCTGCTATAAAAAACCTCATCTTTTTTTTTTTCATCTTGTAGTTGATAATACATTCTTTTACTAGCCTTATACATCAAGATAGGAGATGGGTGTTTCAAAAAAGACTCTTTTTTTACTATTTGTTAGTGTTTTTCTTGGAGAAATTAGTCTCTGCTCTTCTACCAAG : TTATATGTGGTGTACATGGGAAGCAAAGATAGTGATGAGCATCAAGATGAGATTTTGAGGCAAAACCATCAAATGCTTACTGATATTCATGGAGGAAA : TGTTGAACAAGCCAAGAGTTCTCATGTATACAGTTATAGACATGGTTTTAAAGGCTTTGCAGCCAAGTTGACTGAGAAACAGGCTTCTGAAATATCTA : AAATGCCTGGTGTGGTATCTGTATTTCCAAATACTAAGAGAAACCTGCATACAACTCATTCATGGGATTTTATGGGGCTCAGTGAAGATGAAACAATGGAAATCCCAGGTTTTTCCACCAAGAACCAAGTTAATGTAATCATTGGTTTCATTGATACAG : GAATTTGGCCTGAGTCTCCAAGTTTTAGGGACACCCACATGCCTCCAGTGCCTGCTGGATGGAAAGGACAATGCCAATCAGGGGAAGCATTCAATGCCTCAATATGCAACAG : GAAAATAATTGGGGCAAGATATTATATGAGTGGCTATGCAGCTGAAGAAGATGAAAAGATCATGTTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGCATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTGCATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCTGTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTGGATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACG : GGTGAAAGTCTTAGCTTATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAGAAGGTACTTAACTGTTTGTTAATTGTAGATATGTATGCATTGACAATTATATTAAAGTACTTTTCGTTCCTATCTTTTCCACTAGTTATTGCTTAGATAGTTCTTTGAATAGAACTAAGGCCAAAGGGAAGGTTCTTGTGTGTCGACATGCTGGAAGC</gDNA_template>
            <first_frame> F  H  F  L  L  S  K  Q  S  R  K  K  L  F  K  R  S  N  M  I  I  *  N  I  S  *  F  Y  P  T  Q  Y  V  N  G  N  I  F  C  L  L  L  L  H  S  I  P  V  T  E  *  S  L  S  L  S  L  S  L  S  S  L  F  S  N  H  S  L  S  L  C  V  L  F  C  Y  K  K  P  H  L  F  F  F  H  L  V  V  D  N  T  F  F  Y  *  P  Y  T  S  R  *  E  M  G  V  S  K  K  T  L  F  L  L  F  V  S  V  F  L  G  E  I  S  L  C  S  S  T  K  :  L  Y  V  V  Y  M  G  S  K  D  S  D  E  H  Q  D  E  I  L  R  Q  N  H  Q  M  L  T  D  I  H  G  G  N :   V  E  Q  A  K  S  S  H  V  Y  S  Y  R  H  G  F  K  G  F  A  A  K  L  T  E  K  Q  A  S  E  I  S   : K  M  P  G  V  V  S  V  F  P  N  T  K  R  N  L  H  T  T  H  S  W  D  F  M  G  L  S  E  D  E  T  M  E  I  P  G  F  S  T  K  N  Q  V  N  V  I  I  G  F  I  D  T   : G  I  W  P  E  S  P  S  F  R  D  T  H  M  P  P  V  P  A  G  W  K  G  Q  C  Q  S  G  E  A  F  N  A  S  I  C  N  R :   K  I  I  G  A  R  Y  Y  M  S  G  Y  A  A  E  E  D  E  K  I  M  F  K  S  A  R  D  S  S  G  H  G  S  H  T  A  S  T  A  A  G  R  Y  V  A  D  M  N  Y  K  G  L  A  S  G  G  A  R  G  G  A  P  M  A  R  I  A  V  Y  K  T  C  W  S  S  G  C  Y  D  V  D  L  L  A  A  F  D  D  A  I  R  D  G  V  H  V  I  S  I  S  L  G  P  D  A  P  Q  G  D  Y  F  S  D  A  I  S  V  G  S  F  H  A  V  S  R  G  I  L  V  V  A  S  V  G  N  E  G  T  S  G  S  A  T  N  L  A  P  W  M  I  T  V  A  A  S  S  T  D  R  D  F  T  S  D  V  L  L  G  N  R  V  Q  L  T  :  G  E  S  L  S  L  S  Q  M  H  T  S  A  K  I  I  P  A  S  E  A  Y  A  G  Y  F  T  P  Y  Q  S  R  *  S  R  R  Y  L  T  V  C  *  L  *  I  C  M  H  *  Q  L  Y  *  S  T  F  R  S  Y  L  F  H  *  L  L  L  R  *  F  F  E  *  N  *  G  Q  R  E  G  S  C  V  S  T  C  W  K  </first_frame>
            <second_frame>  S  I  F  F  C  L  S  N  R  E  K  N  Y  L  R  D  R  I  *  L  Y  E  I  S  L  N  F  I  R  R  S  T  L  M  E  I  Y  F  V  Y  Y  Y  Y  T  V  Y  L  *  L  N  N  L  F  L  F  L  S  P  S  P  L  Y  F  Q  I  I  L  S  L  C  V  S  C  S  A  I  K  N  L  I  F  F  F  F  I  L  *  L  I  I  H  S  F  T  S  L  I  H  Q  D  R  R  W  V  F  Q  K  R  L  F  F  Y  Y  L  L  V  F  F  L  E  K  L  V  S  A  L  L  P  S :   Y  M  W  C  T  W  E  A  K  I  V  M  S  I  K  M  R  F  *  G  K  T  I  K  C  L  L  I  F  M  E  E   : M  L  N  K  P  R  V  L  M  Y  T  V  I  D  M  V  L  K  A  L  Q  P  S  *  L  R  N  R  L  L  K  Y  L  :  K  C  L  V  W  Y  L  Y  F  Q  I  L  R  E  T  C  I  Q  L  I  H  G  I  L  W  G  S  V  K  M  K  Q  W  K  S  Q  V  F  P  P  R  T  K  L  M  *  S  L  V  S  L  I  Q  :  E  F  G  L  S  L  Q  V  L  G  T  P  T  C  L  Q  C  L  L  D  G  K  D  N  A  N  Q  G  K  H  S  M  P  Q  Y  A  T   : G  K  *  L  G  Q  D  I  I  *  V  A  M  Q  L  K  K  M  K  R  S  C  S  S  L  P  G  T  V  L  V  M  E  V  I  Q  L  Q  L  L  L  G  V  M  *  L  I  *  I  T  K  V  W  H  L  E  E  P  E  V  V  P  Q  W  P  G  *  Q  C  T  K  P  A  G  V  L  V  A  M  M  L  I  C  W  L  H  L  M  M  Q  L  E  M  G  F  M  S  F  L  Y  L  W  A  Q  M  L  P  K  E  I  I  L  V  M  Q  F  L  W  G  H  F  M  L  L  A  V  G  Y  L  *  W  P  P  L  E  M  K  E  P  L  V  Q  P  Q  I  *  L  L  G  *  S  Q  L  Q  P  V  Q  P  I  E  I  L  H  L  M  F  Y  *  E  I  E  F  N  S  R :   V  K  V  L  A  Y  L  K  C  I  H  L  Q  K  S  Y  L  L  L  K  L  M  L  D  T  S  L  L  I  N  P  G  E  A  E  G  T  *  L  F  V  N  C  R  Y  V  C  I  D  N  Y  I  K  V  L  F  V  P  I  F  S  T  S  Y  C  L  D  S  S  L  N  R  T  K  A  K  G  K  V  L  V  C  R  H  A  G  S </second_frame>
            <third_frame>   P  F  S  F  V  *  A  I  A  K  K  I  I  *  E  I  E  Y  D  Y  M  K  Y  L  L  I  L  S  D  A  V  R  *  W  K  Y  I  L  S  T  T  I  T  Q  Y  T  C  D  *  I  I  S  F  S  F  S  L  P  L  L  F  I  F  K  S  F  S  L  S  V  C  L  V  L  L  *  K  T  S  S  F  F  F  S  S  C  S  *  *  Y  I  L  L  L  A  L  Y  I  K  I  G  D  G  C  F  K  K  D  S  F  F  T  I  C  *  C  F  S  W  R  N  *  S  L  L  F  Y  Q   : V  I  C  G  V  H  G  K  Q  R  *  *  *  A  S  R  *  D  F  E  A  K  P  S  N  A  Y  *  Y  S  W  R  K  :  C  *  T  S  Q  E  F  S  C  I  Q  L  *  T  W  F  *  R  L  C  S  Q  V  D  *  E  T  G  F  *  N  I  * :   N  A  W  C  G  I  C  I  S  K  Y  *  E  K  P  A  Y  N  S  F  M  G  F  Y  G  A  Q  *  R  *  N  N  G  N  P  R  F  F  H  Q  E  P  S  *  C  N  H  W  F  H  *  Y  R :   N  L  A  *  V  S  K  F  *  G  H  P  H  A  S  S  A  C  W  M  E  R  T  M  P  I  R  G  S  I  Q  C  L  N  M  Q  Q  :  E  N  N  W  G  K  I  L  Y  E  W  L  C  S  *  R  R  *  K  D  H  V  Q  V  C  Q  G  Q  F  W  S  W  K  S  Y  S  F  N  C  C  W  A  L  C  S  *  Y  E  L  Q  R  F  G  I  W  R  S  Q  R  W  C  P  N  G  Q  D  S  S  V  Q  N  L  L  E  F  W  L  L  *  C  *  F  V  G  C  I  *  *  C  N  *  R  W  G  S  C  H  F  Y  I  F  G  P  R  C  S  P  R  R  L  F  *  *  C  N  F  C  G  V  I  S  C  C  *  P  W  D  T  C  S  G  L  R  W  K  *  R  N  L  W  F  S  H  K  F  S  S  L  D  D  H  S  C  S  Q  F  N  R  *  R  F  Y  I  *  C  F  T  R  K  *  S  S  T  H   : G  *  K  S  *  L  I  S  N  A  Y  I  C  K  N  H  T  C  F  *  S  L  C  W  I  L  H  S  L  S  I  Q  V  K  Q  K  V  L  N  C  L  L  I  V  D  M  Y  A  L  T  I  I  L  K  Y  F  S  F  L  S  F  P  L  V  I  A  *  I  V  L  *  I  E  L  R  P  K  G  R  F  L  C  V  D  M  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135233" stop="135150"/>
                    <exon start="135059" stop="134962"/>
                    <exon start="134865" stop="134768"/>
                    <exon start="134676" stop="134518"/>
                    <exon start="133960" stop="133849"/>
                    <exon start="133763" stop="133241"/>
                    <exon start="133160" stop="133062"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGVSKKTLFLLFVSVFLGEISLCSSTKLYVVYMGSKDSDEHQDEILRQNHQMLTDIHGGNVEQAKSSHVYSYRHGFKGFAAKLTEKQASEISKMPGVVSVFPNTKRNLHTTHSWDFMGLSEDETMEIPGFSTKNQVNVIIGFIDTGIWPESPSFRDTHMPPVPAGWKGQCQSGEAFNASICNRKIIGARYYMSGYAAEEDEKIMFKSARDSSGHGSHTASTAAGRYVADMNYKGLASGGARGGAPMARIAVYKTCWSSGCYDVDLLAAFDDAIRDGVHVISISLGPDAPQGDYFSDAISVGSFHAVSRGILVVASVGNEGTSGSATNLAPWMITVAASSTDRDFTSDVLLGNRVQLTGESLSLSQMHTSAKIIPASEAYAGYFTPYQSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="132279" e_stop="132091"/>
            <exon e_start="131881" e_stop="131053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132279" e_stop="132091" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="132090" i_stop="131882" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="131881" e_stop="131053" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132279" stop="132091"/>
              <exon start="131881" stop="131410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132174" stop="132091"/>
              <exon start="131881" stop="131544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131663" stop="131053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131603" stop="131068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428334" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCTGATATTACTGCTCCCGGTTTAAATATCCTGGCAGCATGGTCCCCAGCAATGTCTAGGTTGAAGTTCAACATACTCTCTGGAACCTCCATGGCTTGCCCTCACATATCAGGAGTTGTTGCCTTGTTAAAAGCCGTGCATCCATCATGGTCTCCCTCTGCAATCAAATCAGCCATCATGACAACAG : CCAAACTATCAGATATGCATCACAAACCCATAATAGTAGATCCTGAAGGGAAGAAGGCTAATCCATTTGATTTTGGTTCTGGATTTGTTAACCCCACGAAAGTCCTCAATCCTGGTCTGATATATGATGCACAACCAGAAGATTACAGAGCATTTCTTTGTTCAATTGGTTATGACGAGAAATCTCTGCATCTAATTACAAGGGACAACAGAACGTGTGATCAAACCTTTGCATCGCCAAATGAACTAAATTATCCCTCCATCACAGTACCAAACCTCAGAAACAATTACTCAGTATCTCGAACTGTCACAAATGTGGGAAAGTCAAGGAGTACTTACAAGGCAGTTATATTTGCACCAAAGGGTATCAATGTTACTGTGGTGCCGCGAAGATTAGCCTTCACTAGATATTACCAGAAGATGAATTTCACAGTGACTTTCAAAGTGGCTGCACCTACACAGGGATATGTCTTTGGGTCCTTGTCATGGAGGAACAAAAGAACATGGGTAACATCTCCACTTGTTGTCAGAGTGGCACATTCCAATATGGGTACTGTGGTATAGTTCAGCTGCAGTGCTATTTATTTGTGTTATATAAGGTAAGTAACAAGATATTGCAACCAGTAGCTGCTGAAAATGGTTGCATGAAGAAGCCAACACAAAATTCTTAGAAGAATACATGTAATTAGTAGCAGAATACAAATAATTAGTAATTCTTTATTCTATTTGTCCTTTAGTTTTGAGTTTTGGTTCTTGCTACCTAGTCAGGTTTTACTAATAGGGATACTGCAAATTCTTTTACTTGTCTAGTAATTGCATTATGTATTGGC</gDNA_template>
            <first_frame> S  L  I  L  L  L  P  V  *  I  S  W  Q  H  G  P  Q  Q  C  L  G  *  S  S  T  Y  S  L  E  P  P  W  L  A  L  T  Y  Q  E  L  L  P  C  *  K  P  C  I  H  H  G  L  P  L  Q  S  N  Q  P  S  *  Q  Q  :  P  N  Y  Q  I  C  I  T  N  P  *  *  *  I  L  K  G  R  R  L  I  H  L  I  L  V  L  D  L  L  T  P  R  K  S  S  I  L  V  *  Y  M  M  H  N  Q  K  I  T  E  H  F  F  V  Q  L  V  M  T  R  N  L  C  I  *  L  Q  G  T  T  E  R  V  I  K  P  L  H  R  Q  M  N  *  I  I  P  P  S  Q  Y  Q  T  S  E  T  I  T  Q  Y  L  E  L  S  Q  M  W  E  S  Q  G  V  L  T  R  Q  L  Y  L  H  Q  R  V  S  M  L  L  W  C  R  E  D  *  P  S  L  D  I  T  R  R  *  I  S  Q  *  L  S  K  W  L  H  L  H  R  D  M  S  L  G  P  C  H  G  G  T  K  E  H  G  *  H  L  H  L  L  S  E  W  H  I  P  I  W  V  L  W  Y  S  S  A  A  V  L  F  I  C  V  I  *  G  K  *  Q  D  I  A  T  S  S  C  *  K  W  L  H  E  E  A  N  T  K  F  L  E  E  Y  M  *  L  V  A  E  Y  K  *  L  V  I  L  Y  S  I  C  P  L  V  L  S  F  G  S  C  Y  L  V  R  F  Y  *  *  G  Y  C  K  F  F  Y  L  S  S  N  C  I  M  Y  W  </first_frame>
            <second_frame>  A  *  Y  Y  C  S  R  F  K  Y  P  G  S  M  V  P  S  N  V  *  V  E  V  Q  H  T  L  W  N  L  H  G  L  P  S  H  I  R  S  C  C  L  V  K  S  R  A  S  I  M  V  S  L  C  N  Q  I  S  H  H  D  N  S :   Q  T  I  R  Y  A  S  Q  T  H  N  S  R  S  *  R  E  E  G  *  S  I  *  F  W  F  W  I  C  *  P  H  E  S  P  Q  S  W  S  D  I  *  C  T  T  R  R  L  Q  S  I  S  L  F  N  W  L  *  R  E  I  S  A  S  N  Y  K  G  Q  Q  N  V  *  S  N  L  C  I  A  K  *  T  K  L  S  L  H  H  S  T  K  P  Q  K  Q  L  L  S  I  S  N  C  H  K  C  G  K  V  K  E  Y  L  Q  G  S  Y  I  C  T  K  G  Y  Q  C  Y  C  G  A  A  K  I  S  L  H  *  I  L  P  E  D  E  F  H  S  D  F  Q  S  G  C  T  Y  T  G  I  C  L  W  V  L  V  M  E  E  Q  K  N  M  G  N  I  S  T  C  C  Q  S  G  T  F  Q  Y  G  Y  C  G  I  V  Q  L  Q  C  Y  L  F  V  L  Y  K  V  S  N  K  I  L  Q  P  V  A  A  E  N  G  C  M  K  K  P  T  Q  N  S  *  K  N  T  C  N  *  *  Q  N  T  N  N  *  *  F  F  I  L  F  V  L  *  F  *  V  L  V  L  A  T  *  S  G  F  T  N  R  D  T  A  N  S  F  T  C  L  V  I  A  L  C  I  G </second_frame>
            <third_frame>   P  D  I  T  A  P  G  L  N  I  L  A  A  W  S  P  A  M  S  R  L  K  F  N  I  L  S  G  T  S  M  A  C  P  H  I  S  G  V  V  A  L  L  K  A  V  H  P  S  W  S  P  S  A  I  K  S  A  I  M  T  T   : A  K  L  S  D  M  H  H  K  P  I  I  V  D  P  E  G  K  K  A  N  P  F  D  F  G  S  G  F  V  N  P  T  K  V  L  N  P  G  L  I  Y  D  A  Q  P  E  D  Y  R  A  F  L  C  S  I  G  Y  D  E  K  S  L  H  L  I  T  R  D  N  R  T  C  D  Q  T  F  A  S  P  N  E  L  N  Y  P  S  I  T  V  P  N  L  R  N  N  Y  S  V  S  R  T  V  T  N  V  G  K  S  R  S  T  Y  K  A  V  I  F  A  P  K  G  I  N  V  T  V  V  P  R  R  L  A  F  T  R  Y  Y  Q  K  M  N  F  T  V  T  F  K  V  A  A  P  T  Q  G  Y  V  F  G  S  L  S  W  R  N  K  R  T  W  V  T  S  P  L  V  V  R  V  A  H  S  N  M  G  T  V  V  *  F  S  C  S  A  I  Y  L  C  Y  I  R  *  V  T  R  Y  C  N  Q  *  L  L  K  M  V  A  *  R  S  Q  H  K  I  L  R  R  I  H  V  I  S  S  R  I  Q  I  I  S  N  S  L  F  Y  L  S  F  S  F  E  F  W  F  L  L  P  S  Q  V  L  L  I  G  I  L  Q  I  L  L  L  V  *  *  L  H  Y  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132277" stop="132091"/>
                    <exon start="131881" stop="131319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDITAPGLNILAAWSPAMSRLKFNILSGTSMACPHISGVVALLKAVHPSWSPSAIKSAIMTTAKLSDMHHKPIIVDPEGKKANPFDFGSGFVNPTKVLNPGLIYDAQPEDYRAFLCSIGYDEKSLHLITRDNRTCDQTFASPNELNYPSITVPNLRNNYSVSRTVTNVGKSRSTYKAVIFAPKGINVTVVPRRLAFTRYYQKMNFTVTFKVAAPTQGYVFGSLSWRNKRTWVTSPLVVRVAHSNMGTVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="145971" PGL_stop="148840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145971" e_stop="146420"/>
            <exon e_start="146520" e_stop="146636"/>
            <exon e_start="147572" e_stop="148840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.954" e_score="0.993"/>
          <exon-intron don_prob="0.996" acc_prob="0.695" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="145971" e_stop="146420" e_length="450"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.954">
            <gDNA_intron_boundary i_start="146421" i_stop="146519" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146520" e_stop="146636" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.695">
            <gDNA_intron_boundary i_start="146637" i_stop="147571" i_length="935"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="147572" e_stop="148840" e_length="1269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145971" stop="146420"/>
              <exon start="146520" stop="146636"/>
              <exon start="147572" stop="148840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146047" stop="146420"/>
              <exon start="146520" stop="146573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146062" stop="146420"/>
              <exon start="146520" stop="146636"/>
              <exon start="147572" stop="147710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146077" stop="146420"/>
              <exon start="146520" stop="146636"/>
              <exon start="147572" stop="147700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146111" stop="146420"/>
              <exon start="146520" stop="146636"/>
              <exon start="147572" stop="147837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146185" stop="146420"/>
              <exon start="146520" stop="146576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATTTTTTTTTTGAGTGAACCTCTTTATCTCTTATTCACAATTGATTGCCATATTCCACCATGAAAATATACAGTGCAAAAAACATCAACAAAAATGGTGGCATTAGCTTCTTCATCTCTCTGCAATTCCCCTTCTTCAATTATCCATTCCTCAAAAACATCTATACCCAATTTCATTACATTCTCTTCCTTAAGTTATTACAAGAAAAGGGGAAAATCGCTTGCAAGTCGTAGCCTTGGAATTGTTGCTGCTACTGAAGGTTCTGTTAACAAATCTAGTGGAAAAGATGAGGAAAAACAAGAAGACCCATCAGTTCCTACATGGGCTAAACCCGGTACGGATGAGCCTCCACCATGGGCTAGAAATGAAGCACAGAAAGATTCTTCAAGCATTCAAGTTCCATTCGTTGTTTATTTGCTTGCTTCTGCTGTCACAGCAATTGCAGCG : ATTGGTTCTATTTTCGAGTACACGAATCAGAAACCTGTGTTTGGAGTTTTGGGTTCAGATAGTGTTTTTTATGCTCCATTGCTTGGGTTCTTTGTGTTCACTGGCATTCCCACTTCT : GCATTCCTTTGGTTCAAATCAGTACAAGTTGCTAACAAGGAGGCTGAGGAACAAGACCGCAGGGATGGATATATGTAACATCTAATATGCAATCTTTAGGTGATATCTGCAGCATCTTATATGCATTTTTCAGATGTTGTTGATGGTTGTTTCCTAAAATACTATCATCGCAAATGAATACTTTCTCGAGGTTTGTTCTTTCTAGAGCAGCATGAGTGTAAAAATTGTCTTCTCAATACCAGTTATTCCGCTTTATCAATTCTAAAAGTCTTTAATCACCAGATTTGACTATTTCCATCTCTCATTTGAAAAAATAGTTTATCGATTTGTGGTTAGACAAGTTACTTGCTGATCTTTTGGCACAACTTGTGTAAGTTATCCACCAATCTGGTGTTGCTTCTTAACTCTTAACATATCGACCTTGGTAAATCACTAATTCTCTATCTTGTCCCTCACTACCAAGACTTAGGAGCTTGAGGCTTTGGTTCACAACGTATTTACTAATAAGTTGTAATAAATAGTCAAAAGAATATTCAAATAGGTCCTGTGAGTTAAATACATAGCATAACTTACAAGTTCAGTCTACTCTCATTTTGATGGTATATCAGCACTTATTCCTTCCTCTTATTTATTAAGTGAACGAAAAAAGTTCACACTCTAATAGCATCATAGCATGTATTGTCTGCTTGCCTTCACATGTCTTTTTGGTTTCAAGTGTTTGTACCTAAGAAACCAGCAAGTCATTTGTTTCTTGGAATTGAGTAGTGATATCTGCAGAATGGTTTGATACTACATTCTACATGTTGTATTTCATTTCTTTGAAATAGGATCGATATAGTTCTTAATCTGAAGACTATCTCTAAAGTATGCTTATATTGCTTTAGTTTACTGTTTCTCATTTTTGTAGTATCTGCCTGAGAATTTCTTGAAAAACTGATCGCGAGCTAGTAAAAAAAAATGTTCAGTCGTTCCACAACATTCTCTCTCCTTCCTCGTTGTGCTATCACACAGAACTCTGAATTTTGCAGTCTACTTCCTTTGAGCTTTTCAACTCTCTGGGGCGGTGAAGTTCATCCATTTCTCCAAGAGAAGAGAAAAGATAGGGAAGCAACATCATATGAAGTCATGTGAACACAACTTTTGTCCCTGTAGGGAGGACAATTGTATTTTTCCCTCAGAAATGAACTTTAATATAGAAATATGTCATGGGCATTTCGAATCAGAAAGGAACTTCAATATAGAAATATGTCATGGGCATTTCAAATATAA</gDNA_template>
            <first_frame> D  I  F  F  L  S  E  P  L  Y  L  L  F  T  I  D  C  H  I  P  P  *  K  Y  T  V  Q  K  T  S  T  K  M  V  A  L  A  S  S  S  L  C  N  S  P  S  S  I  I  H  S  S  K  T  S  I  P  N  F  I  T  F  S  S  L  S  Y  Y  K  K  R  G  K  S  L  A  S  R  S  L  G  I  V  A  A  T  E  G  S  V  N  K  S  S  G  K  D  E  E  K  Q  E  D  P  S  V  P  T  W  A  K  P  G  T  D  E  P  P  P  W  A  R  N  E  A  Q  K  D  S  S  S  I  Q  V  P  F  V  V  Y  L  L  A  S  A  V  T  A  I  A  A  :  I  G  S  I  F  E  Y  T  N  Q  K  P  V  F  G  V  L  G  S  D  S  V  F  Y  A  P  L  L  G  F  F  V  F  T  G  I  P  T  S  :  A  F  L  W  F  K  S  V  Q  V  A  N  K  E  A  E  E  Q  D  R  R  D  G  Y  M  *  H  L  I  C  N  L  *  V  I  S  A  A  S  Y  M  H  F  S  D  V  V  D  G  C  F  L  K  Y  Y  H  R  K  *  I  L  S  R  G  L  F  F  L  E  Q  H  E  C  K  N  C  L  L  N  T  S  Y  S  A  L  S  I  L  K  V  F  N  H  Q  I  *  L  F  P  S  L  I  *  K  N  S  L  S  I  C  G  *  T  S  Y  L  L  I  F  W  H  N  L  C  K  L  S  T  N  L  V  L  L  L  N  S  *  H  I  D  L  G  K  S  L  I  L  Y  L  V  P  H  Y  Q  D  L  G  A  *  G  F  G  S  Q  R  I  Y  *  *  V  V  I  N  S  Q  K  N  I  Q  I  G  P  V  S  *  I  H  S  I  T  Y  K  F  S  L  L  S  F  *  W  Y  I  S  T  Y  S  F  L  L  F  I  K  *  T  K  K  V  H  T  L  I  A  S  *  H  V  L  S  A  C  L  H  M  S  F  W  F  Q  V  F  V  P  K  K  P  A  S  H  L  F  L  G  I  E  *  *  Y  L  Q  N  G  L  I  L  H  S  T  C  C  I  S  F  L  *  N  R  I  D  I  V  L  N  L  K  T  I  S  K  V  C  L  Y  C  F  S  L  L  F  L  I  F  V  V  S  A  *  E  F  L  E  K  L  I  A  S  *  *  K  K  M  F  S  R  S  T  T  F  S  L  L  P  R  C  A  I  T  Q  N  S  E  F  C  S  L  L  P  L  S  F  S  T  L  W  G  G  E  V  H  P  F  L  Q  E  K  R  K  D  R  E  A  T  S  Y  E  V  M  *  T  Q  L  L  S  L  *  G  G  Q  L  Y  F  S  L  R  N  E  L  *  Y  R  N  M  S  W  A  F  R  I  R  K  E  L  Q  Y  R  N  M  S  W  A  F  Q  I  * </first_frame>
            <second_frame>  I  F  F  F  *  V  N  L  F  I  S  Y  S  Q  L  I  A  I  F  H  H  E  N  I  Q  C  K  K  H  Q  Q  K  W  W  H  *  L  L  H  L  S  A  I  P  L  L  Q  L  S  I  P  Q  K  H  L  Y  P  I  S  L  H  S  L  P  *  V  I  T  R  K  G  E  N  R  L  Q  V  V  A  L  E  L  L  L  L  L  K  V  L  L  T  N  L  V  E  K  M  R  K  N  K  K  T  H  Q  F  L  H  G  L  N  P  V  R  M  S  L  H  H  G  L  E  M  K  H  R  K  I  L  Q  A  F  K  F  H  S  L  F  I  C  L  L  L  L  S  Q  Q  L  Q  R :   L  V  L  F  S  S  T  R  I  R  N  L  C  L  E  F  W  V  Q  I  V  F  F  M  L  H  C  L  G  S  L  C  S  L  A  F  P  L  L :   H  S  F  G  S  N  Q  Y  K  L  L  T  R  R  L  R  N  K  T  A  G  M  D  I  C  N  I  *  Y  A  I  F  R  *  Y  L  Q  H  L  I  C  I  F  Q  M  L  L  M  V  V  S  *  N  T  I  I  A  N  E  Y  F  L  E  V  C  S  F  *  S  S  M  S  V  K  I  V  F  S  I  P  V  I  P  L  Y  Q  F  *  K  S  L  I  T  R  F  D  Y  F  H  L  S  F  E  K  I  V  Y  R  F  V  V  R  Q  V  T  C  *  S  F  G  T  T  C  V  S  Y  P  P  I  W  C  C  F  L  T  L  N  I  S  T  L  V  N  H  *  F  S  I  L  S  L  T  T  K  T  *  E  L  E  A  L  V  H  N  V  F  T  N  K  L  *  *  I  V  K  R  I  F  K  *  V  L  *  V  K  Y  I  A  *  L  T  S  S  V  Y  S  H  F  D  G  I  S  A  L  I  P  S  S  Y  L  L  S  E  R  K  K  F  T  L  *  *  H  H  S  M  Y  C  L  L  A  F  T  C  L  F  G  F  K  C  L  Y  L  R  N  Q  Q  V  I  C  F  L  E  L  S  S  D  I  C  R  M  V  *  Y  Y  I  L  H  V  V  F  H  F  F  E  I  G  S  I  *  F  L  I  *  R  L  S  L  K  Y  A  Y  I  A  L  V  Y  C  F  S  F  L  *  Y  L  P  E  N  F  L  K  N  *  S  R  A  S  K  K  K  C  S  V  V  P  Q  H  S  L  S  F  L  V  V  L  S  H  R  T  L  N  F  A  V  Y  F  L  *  A  F  Q  L  S  G  A  V  K  F  I  H  F  S  K  R  R  E  K  I  G  K  Q  H  H  M  K  S  C  E  H  N  F  C  P  C  R  E  D  N  C  I  F  P  S  E  M  N  F  N  I  E  I  C  H  G  H  F  E  S  E  R  N  F  N  I  E  I  C  H  G  H  F  K  Y   </second_frame>
            <third_frame>   Y  F  F  F  E  *  T  S  L  S  L  I  H  N  *  L  P  Y  S  T  M  K  I  Y  S  A  K  N  I  N  K  N  G  G  I  S  F  F  I  S  L  Q  F  P  F  F  N  Y  P  F  L  K  N  I  Y  T  Q  F  H  Y  I  L  F  L  K  L  L  Q  E  K  G  K  I  A  C  K  S  *  P  W  N  C  C  C  Y  *  R  F  C  *  Q  I  *  W  K  R  *  G  K  T  R  R  P  I  S  S  Y  M  G  *  T  R  Y  G  *  A  S  T  M  G  *  K  *  S  T  E  R  F  F  K  H  S  S  S  I  R  C  L  F  A  C  F  C  C  H  S  N  C  S   : D  W  F  Y  F  R  V  H  E  S  E  T  C  V  W  S  F  G  F  R  *  C  F  L  C  S  I  A  W  V  L  C  V  H  W  H  S  H  F   : C  I  P  L  V  Q  I  S  T  S  C  *  Q  G  G  *  G  T  R  P  Q  G  W  I  Y  V  T  S  N  M  Q  S  L  G  D  I  C  S  I  L  Y  A  F  F  R  C  C  *  W  L  F  P  K  I  L  S  S  Q  M  N  T  F  S  R  F  V  L  S  R  A  A  *  V  *  K  L  S  S  Q  Y  Q  L  F  R  F  I  N  S  K  S  L  *  S  P  D  L  T  I  S  I  S  H  L  K  K  *  F  I  D  L  W  L  D  K  L  L  A  D  L  L  A  Q  L  V  *  V  I  H  Q  S  G  V  A  S  *  L  L  T  Y  R  P  W  *  I  T  N  S  L  S  C  P  S  L  P  R  L  R  S  L  R  L  W  F  T  T  Y  L  L  I  S  C  N  K  *  S  K  E  Y  S  N  R  S  C  E  L  N  T  *  H  N  L  Q  V  Q  S  T  L  I  L  M  V  Y  Q  H  L  F  L  P  L  I  Y  *  V  N  E  K  S  S  H  S  N  S  I  I  A  C  I  V  C  L  P  S  H  V  F  L  V  S  S  V  C  T  *  E  T  S  K  S  F  V  S  W  N  *  V  V  I  S  A  E  W  F  D  T  T  F  Y  M  L  Y  F  I  S  L  K  *  D  R  Y  S  S  *  S  E  D  Y  L  *  S  M  L  I  L  L  *  F  T  V  S  H  F  C  S  I  C  L  R  I  S  *  K  T  D  R  E  L  V  K  K  N  V  Q  S  F  H  N  I  L  S  P  S  S  L  C  Y  H  T  E  L  *  I  L  Q  S  T  S  F  E  L  F  N  S  L  G  R  *  S  S  S  I  S  P  R  E  E  K  R  *  G  S  N  I  I  *  S  H  V  N  T  T  F  V  P  V  G  R  T  I  V  F  F  P  Q  K  *  T  L  I  *  K  Y  V  M  G  I  S  N  Q  K  G  T  S  I  *  K  Y  V  M  G  I  S  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146037" stop="146420"/>
                    <exon start="146520" stop="146636"/>
                    <exon start="147572" stop="147649"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYTVQKTSTKMVALASSSLCNSPSSIIHSSKTSIPNFITFSSLSYYKKRGKSLASRSLGIVAATEGSVNKSSGKDEEKQEDPSVPTWAKPGTDEPPPWARNEAQKDSSSIQVPFVVYLLASAVTAIAAIGSIFEYTNQKPVFGVLGSDSVFYAPLLGFFVFTGIPTSAFLWFKSVQVANKEAEEQDRRDGYM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020J02.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="148614" stop="148838"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFQLSGAVKFIHFSKRREKIGKQHHMKSCEHNFCPCREDNCIFPSEMNFNIEICHGHFESERNFNIEICHGHFKY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 260 chains have been computed
$ 
$ memory statistics:
$ 693304 bytes spliced alignments in total
$ 207 spliced alignments have been stored
$ 3349 bytes was the average size of a spliced alignment
$ 44608 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1858 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 296 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:31:13
-->
