<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:16:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592949" ref_strand="+" ref_description="SGN-U592949 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|60279272|emb|CAA63968.1| (e_value=2e-12) pom30 [Solanum tuberosum]; (*ATH) AT5G67500.1 (e_value=3e-11)  Symbol: None | porin, putative, similar to SP:P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin | chr5:26952389-26... ; ">
      <seq>ggggaccgtttaccatattttttttttcaatagcagactgacataagagaagtactcatagaccagacccaattattgtccgtccgattaaaataggcggtctataatggatccttgctggcgacccataaactgtcacgttgtgttgattgggcctttctctcgtggtggctgccccaatatttatttatttggctcccttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcannaaagccagagatgttttgactaaggactatatttccgatcannnnctatctatttcnnnctacagtgacactggagtggcccttacntca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="740" stop="1855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1036" g_stop="1352" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.789" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="385" r_length="68" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U592949" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1036" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACCGTTTACCATATTTTTTTTTTCAATAGCAGACTGACATAAGAGAAGTACTCATAGACCAGACCCAATTATTGTCCGTCCGATTAAATAAGGCGGTCTATAATGGATCCTTGCTGGCGACCCATAAACTGTCACGTTGGGTTGATTGGGCCTTTCTCTCGTGGTGGCTGCCCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG</genome_strand>
        <mrna_strand>GGGGACCGTTTACCATATTTTTTTTTTCAATAGCAGACTGACATAAGAGAAGTACTCATAGACCAGACCCAATTATTGTCCGTCCGATTAAAATAGGCGGTCTATAATGGATCCTTGCTGGCGACCCATAAACTGTCACGTTGTGTTGATTGGGCCTTTCTCTCGTGGTGGCTGCCCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCANNAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCANNNNCTATCTATTTCNNNCTACAGTGACACTGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580021" ref_strand="+" ref_description="SGN-U580021 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|60279272|emb|CAA63968.1| (e_value=6e-150) pom30 [Solanum tuberosum]; (*ATH) AT5G67500.1 (e_value=7e-110)  Symbol: None | porin, putative, similar to SP:P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin | chr5:26952389-26... ; (*SWP) sp|P42054|VDAC_PEA (e_value=3e-78) Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1; ">
      <seq>ggcaatacccatttatttggctcccttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgttaatttcattttaattatttctatgtttatctctttaattgctacatactgttttttggtaattgtttgctgtgactggataatttttcatcctttatgaagtgaataagttctagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="921" stop="5406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1211" g_stop="1352" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="210" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="321" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="408" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="617" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="5106" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="1319" r_length="702" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U580021" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1211" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="5106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTTTTTTGGTAATTGTTTGCTGTGACTGGATAATTTTTCATCCTTTATGAAGTGAATAAGTTCTAGCCC</genome_strand>
        <mrna_strand>GGCAATACCCATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTTTTTTGGTAATTGTTTGCTGTGACTGGATAATTTTTCATCCTTTATGAAGTGAATAAGTTCTAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591575" ref_strand="+" ref_description="SGN-U591575 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|77999247|gb|ABB16970.1| (e_value=2e-91) POM30-like protein [Solanum tuberosum]; (*ATH) AT5G67500.1 (e_value=4e-65)  Symbol: None | porin, putative, similar to SP:P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin | chr5:26952389-26... ; (*SWP) sp|P42054|VDAC_PEA (e_value=2e-39) Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1; ">
      <seq>agttgatgcatcgtaaaacatttcaaccactcttactctaaatgacattgcgggttcaacggggaccattggctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgctcggtgctcccactttcgccatcggtgcaaaggcaagttactagacaaccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgtggataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgatccccaagtcattggtgactatttctagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="3601" stop="4946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3793" g_stop="3811" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="106" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="315" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4405" g_stop="4646" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="557" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U591575" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3793" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTG</genome_strand>
        <mrna_strand>AGTTGATGCATCGTAAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCGGGTTCAACGGGGACCATTGGCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTCGGTGCTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACTAGACAACCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTGGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATCCCCAAGTCATTGGTGACTATTTCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567797" ref_strand="+" ref_description="SGN-U567797 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>tttttatctcacctataaattagacttgtggaattgtaatttaagttgaacacttcaaactaaccaaagagaagatatgctgattcttatttcaatttgacttgtggaagtgtgtgctagaagtgaccaaatcaagatgctgatcatgcaatttcaggcaaccagaaaggaaaggagtactatccttgcaagttccaattacagaaagcaatatataaagagaagatttaaaagactggtctctctcgagctctaaaataattacttaatagttaaccaataggaggaagcaagtggcattaacctgcacctatatgtttaaaattttgtattcaccttttatcaatcaatcactactactatgagttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="5655" stop="6626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5955" g_stop="6326" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U567797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5955" e_stop="6326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTCACCTATAAATTAGACTTGTGGAATTGTAATTTAAGTTGAACACTTCAAACTAACCAAAGAGAAGATATGCTGATTCTTATTTCAATTTGACTTGTGGAAGTGTGTGCTAGAAGTGACCAAATCAAGATGCTGATCATGCAATTTCAGGCAACCAGAAAGGAAAGGAGTACTATCCTTGCAAGTTCCAATTACAGAAAGCAATATATAAAGAGAAGATTTAAAAGACTGGTCTCTCTCGAGCTCTAAAATAATTACTTAATAGTTAACCAATAGGAGGAAGCAAGTGGCATTAACCTGCACCTATATGTTTAAAATTTTGTATTCACCTTTTATCAATCAATCACTACTACTATGAGTTGTAT</genome_strand>
        <mrna_strand>TTTTTATCTCACCTATAAATTAGACTTGTGGAATTGTAATTTAAGTTGAACACTTCAAACTAACCAAAGAGAAGATATGCTGATTCTTATTTCAATTTGACTTGTGGAAGTGTGTGCTAGAAGTGACCAAATCAAGATGCTGATCATGCAATTTCAGGCAACCAGAAAGGAAAGGAGTACTATCCTTGCAAGTTCCAATTACAGAAAGCAATATATAAAGAGAAGATTTAAAAGACTGGTCTCTCTCGAGCTCTAAAATAATTACTTAATAGTTAACCAATAGGAGGAAGCAAGTGGCATTAACCTGCACCTATATGTTTAAAATTTTGTATTCACCTTTTATCAATCAATCACTACTACTATGAGTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580814" ref_strand="+" ref_description="SGN-U580814 Tomato 200607#2 [40 ESTs aligned] (*GB) gi|64420807|gb|AAY41426.1| (e_value=4e-45) putative; (*ATH) AT3G49910.1 (e_value=1e-43) | Symbol: None | 60S ribosomal protein L26 (RPL26A), 60S RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495 | chr3:18515241-18515952 FORWARD | Aliases: F3A4.4; (*SWP) sp|P51414|RL261_ARATH (e_value=1e-42) 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A; ">
      <seq>gaattgctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtactacaataaagctttaatataaacattcttaaaaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7651" stop="6405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7358" g_stop="6720" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="681"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U580814" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7358" e_stop="6720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>GAAT-TGCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571345" ref_strand="+" ref_description="SGN-U571345 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157345278|emb|CAO72006.1| (e_value=1e-50) unnamed; (*ATH) AT3G49900.1 (e_value=1e-40) | Symbol: None | BTB/POZ domain-containing protein, contains BTB/POZ domain, INTERPRO:IPR000210 | chr3:18511620-18513599 REVERSE | Aliases: T16K5.250; (*SWP) sp|Q9S9Q9|Y1044_ARATH (e_value=2e-12) BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440; ">
      <seq>ttaccttacctgcaaataattagtgcccctcaactacattattaccagcggaggaataattctctatttccttggtttctccactagtaactcagcctcctaaaatcataaacgtaacgttttcagcggaagcagtagcaatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaagatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctctctccgccgttaaagataacggccgaaacattctctttgatcgcagagttttgttatgactcgcacatccgtcgttacgccgtttaacgtcgctgcactaaatacggcggcggaattgctagagatgacggaggctaataacattgctggtggcgaaaacttggctcagaaaacggaagcatatttccgcggtgtaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctttgtagattcatgtgttacttcagcttttgtgaatttctcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="11726" stop="15216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12026" g_stop="12348" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12349" i_stop="12504" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12505" g_stop="12574" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="393" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12575" i_stop="13394" i_length="820">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13395" g_stop="13655" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="655" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13656" i_stop="13831" i_length="176">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13832" g_stop="13916" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="740" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14082" g_stop="14916" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="1574" r_length="834" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U571345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12026" e_stop="12348"/>
          <exon e_start="12505" e_stop="12574"/>
          <exon e_start="13395" e_stop="13655"/>
          <exon e_start="13832" e_stop="13916"/>
          <exon e_start="14082" e_stop="14916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACAT-CGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTC</genome_strand>
        <mrna_strand>TTACCTTACCTGCAAATAATTAGTGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA................................................................................................................................................................................ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTGTAGATTCATGTGTTACTTCAGCTTTTG-TGAATTTCTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580488" ref_strand="+" ref_description="SGN-U580488 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|7387809|sp|O49204|KAPS_CATRO (e_value=7e-49) Adenylylsulfate kinase, chloroplast precursor (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase); (*ATH) AT2G14750.1 (e_value=1e-38)  Symbol: None | adenylylsulfate kinase 1 (AKN1), identical to adenylylsulfate kinase 1, chloroplast precursor (APS kinase, Adenosine-5'phosphosulfate kinase, ATP adenosine-5'- phosphosulfate 3'-phosphotransferase) (Arabidopsis thaliana) SWISS-PROT:Q4... ; (*SWP) sp|O49204|KAPS_CATRO (e_value=5e-50) Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN; ">
      <seq>gtttcctctctcgtgaatgttgtgatcacaatatcccaccaaagctcagcctcgttcctaatttcattcgtcctccctagcttcggagtagtacattttttcccttcaatatacaatcaatcgatcaggattcaagattgttccagttcagatgcttgatgatgactgtcgtcggaaacaatgccttgatttgtcgtcctcagttggcatcttgctgtgcgtcgatgaagttagggattttgaagctacaggcgtgtaattgcaaagctaaatcactgggcttcaacattaccggtaccgaggtgaaaaccaccttcttagcgccggtaaggaaaacggagacttctagaatcgttcatatcaacggaaaatccgcaagttctcatcagccaggatacaattcaaacgatgaaatcagtgcaaacgatttttctggctttcctggtaaaagtatatccctgacttctacaaacgggaattcaacaaacattgtttggcacaaatgctctgtagagaaaagtgacagacaggagttgcttcagcaaaggggctgtgttatatggataactggtctcagtggttcagggaagagcactgtggcatgtgctctaggtcgctgtttacatgctagaggaaaactcagttacatccttgatggtgataatgttcgccatggtctaaatcgtgacctcagttttgcagctgaagatcggacagaaaatataaggcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="21778" stop="25012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22078" g_stop="22521" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22522" i_stop="23132" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23133" g_stop="23273" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="585" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23274" i_stop="24564" i_length="1291">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24565" g_stop="24712" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="733" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U580488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22078" e_stop="22521"/>
          <exon e_start="23133" e_stop="23273"/>
          <exon e_start="24565" e_stop="24712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTCTCTCGTGAATGTTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTGGTATTTATATTCTATCGTCTTTTAAAATTTTACATGATATACATATTTTCATCCGTTTTCTTGAGGCACATTATGTTTGTAACCGCTAATCTATTATGGAATGTGCGTGATGTTACTTTTTTGGACTCAAAAGTACATATATTTTAACAATGTATATTTGACTATGATCATGAAAAAGTAGTTGGTGCAATTAGCAATCACGCCACTTTAAAATCTTGAATCTCTCTTTGCACGGAAGCACTGTAAAATTCTGATTTCTGACTCATATGCTGTTTCCTCTTGTATCCTGTGGAAGTATTAGAATGAAAAAGTAGTTGGTGCAATTAGCAATCACACCAGCCGACTTTAAAATCTTGAATCTCTCTTTGTATGGAAGGCTGTCAAATTCTGATTTTTGGCTCATATTGCTATTTCCTGTTGTATCCTGTGGAAGCATTAGAAGTTCTTTACCTCTGATTTTATCTGGATTGTTTGGACATATCTTTTCTTGCTTATGTGCAATAGCCGGACGGTACTCTTTACTTCTGGCTTATTATTTTCAGTGGAGGTATTAAATGTAATTTGCGTGTTAAAAAAGTTATAGTTATTGATGTGGTGAATAATCTAACTAGGTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAGGTTTGTTTCACATCCCATAAGCTCATATCTGTTATCAAATTTTCTACACCTTTCCATCACTTTATATTCTTGCAGATACTTTTTACCATTTGATGTAGATGTACTGTATGCTTCTGTATTTTCTTGGTTTGGTTTTGTTTTCTGTACATGCGTATGATACTTCAGAACAGTGCACAAGTCTGAAATGTTATAATCTTCCATTCTGTTACCAACAAATGCATTTGAAGTTTCTCCATAAGCTATTTTTTCAACATACTGTGGGTTTAAATGCAAATTCAAGATTTAAACCAAAAATGTCGCAACCTAACATTTGATTGATTTTGAAGTACTAGTTAGATAGTGTCCTATTTAGTTCTTTTTTTCCTTTTCAGCCTTAGTCAATGGATTCATCTGAAACTATCAGAATTCAAAGATGCTTTTGTAGATCATAAGATTAGGCTTACTCATAAATGGATTTAGTTAGATAGTGTTTTTTTTCCTATTTAGTTCTTTTTTTCCTTTTCGGCCTTGATCAATGGATTCATCTAATACTAGCAGAATTCCATGATGCTTTTGTAGATCATAAGATTAGGCTCTCATAAAAAGAAAGATTAGGCTGTCTTTCGTTTCTGCATCACATTCAGTGTATTTGTAATGATCCCTTCATTTGTAGTAGCATGTTGATATTTGATTATGATTTTTTAGTTACTAGATGGTTAATTGTGGAACTCATGCCAACTTTATTCCTTCTTGAAAATCTGTGATCAGCATTCAGCTATAGTATACTCCTGCAGTTTTATGTTCTCCGCTTCATGCTTAGTTGATTACACTGGAACATCAAGAAATAGCAGAATCATATAAGTATAAAATTTTGGATATTTATCCTACCAGAAGTTTGCTTGATGAATACCGATTTTTCTTGAGTTGCCATTCATCAGTAGACAAGGGAAGAGTTGTAGCTAAAATAATGGAAAACAGTAATTCAAACGTGTCAGCATTCAAATGGTTCACGCGATTGCAATTTCAACCTGGTCTCTTTCAACTGCCTAGTTGAATTCAAAAATTATTTGTAAACAAGCTACTAGTTATTATGAGTGTAGATATGATTAGAAGCACATGGAATGATTGTAGCAAAACATCTTGATACAGGACAAGTTATTTGTTCTCTTGACGTTGCTTAAATCCCCCCCCCCCCCCCCCCCCCGCAAAAAAAAAGGAGAAGAAGGAGGCATCAAGCAATACTTTTATCCTTATTGCTTATATTGCCTGGCATTTCTTTTTTTTCATTTTTAAATATTAAAAATGTTTACAGGGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGAAGATCGGACAGAAAATATAAGGCGGAT</genome_strand>
        <mrna_strand>GTTTCCTCTCTCGTGAATGTTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGAAGATCGGACAGAAAATATAAGGCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576758" ref_strand="+" ref_description="SGN-U576758 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157332724|emb|CAO14574.1| (e_value=5e-28) unnamed; (*ATH) AT3G49890.1 (e_value=8e-20) | Symbol: None | expressed protein, lea32, Arabidopsis thaliana, EMBL:ATH131342 | chr3:18510221-18511705 FORWARD | Aliases: T16K5.240; ">
      <seq>cgcttgagacccagtactacttcgtcgtaactcaaactgtttgggccaacattgtcgccgccggaaacccctgaagaattactcagaaatcagcgacgatgggtggtgaccggtgtagaagcacgagtagcagtagcagcagcagtgaagaggatggagatgctgattggagagccgccatagattctgttgctgctacaactacatttggcaaaactaccgccaaaattcattcatcaactactgctactaacggagaatctattgcccatccattccaagaagatgaaatagatactatccaaccccagaagctcaaacattatcaaataaagggcctgaagactttggaagacattttagacaagactttagacatagtgagacgcgttgatgatgcttcacaggaagaaacaccctcaatgaatggaggtggagtccggttgtttaggcgtgctccacctgggattctgtttgatcacacagatgaactccaaaaacccagaaagaaaccaagaattcgtcctgggaaggaatttgaggagaactcaaaagagttcaaaaaccaaatcaagtccattgctgttgatgggatggatattttagctgcatctaaaaatgcttgccagaaatcattggccagactagaagcaagagaagcagcagctaaagcagctgctaaaagagaggaagaaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttatagtttctatggctcatttcagcctgtattttatgttaggccacctgagctgctgtccttgtcagttccagaaaaagacatcgacactgttactgtattgccaaaagaaaggaagaagaatttccttctgattaaattcctttgacatttctatattaagttcaaaattttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="29895" stop="26927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29596" g_stop="29262" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29261" i_stop="28966" i_length="296">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28965" g_stop="28815" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="486" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28814" i_stop="27882" i_length="933">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27881" g_stop="27811" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="557" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27810" i_stop="27690" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27689" g_stop="27227" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="1020" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U576758" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1020</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29596" e_stop="29262"/>
          <exon e_start="28965" e_stop="28815"/>
          <exon e_start="27881" e_stop="27811"/>
          <exon e_start="27689" e_stop="27227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAGGTACTTTCTCATTTGCTTACCTGTGTATTACACCTTGCAACTTTTGTTAACTGAGTATTCCAATGATGTTATCGTAATACTCTAGAAATCCCTTCATTTTAATAGATTTGATTCTACGGAGTCTATCTCTATTCTCATACCCTAATTATAGTATGCCTTATCATGCTAGCACTAATAACAGGACAATTGGAACTGTAGTAATTTTCCCTAAAGGCCTTCAACAACATTTTGGTCTATCATGTTTTTGCCATTGCGGTCATTACTTGATGAATAAATTCATGAATGGACACTAACAGGGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAGGTAAAAAAAATAATCTAAAGCAAGTAATTTAATGATTGTTATGTCTGCTTAAATTTGTTTGTTGTTTGTTTGCTTAACATTCTTAAATCCCCACTTTTACTACATTGACCAACCTTGATTAATAGAAGCGTAAGCTTGATACTGTGTTAACATGCTTTCTCTTATGGGATAAAAGTTTATTAGATGCATAATGGAAAAGCCATGTCCTTTACCCATGCTGGAAGGAAGAGGCAGGCCAATTTCTAAATTCTAACAGCAACTTGCGTTCCTTCATCCTAAATTTCCAGGCTATCGTTTAGATTTGAAATTTTTGTTTCACCTACTCTTTATCGCTTTAGTAGAGATGTCAACACTTAACAGAAACTAACTAAAGGAATAATCTACTGAATGACTACCCTTAAATTTTGAGGAGTCAAGCGACCAAACTACAGAAATTTTGGCGGTGGGGGGTTTGTTTAGTGCGTTTTACTTTACTTACTAGACTAATATGATTTGGAATTAATTTGTTCTGATGGTCACTACTTAGATGGAGAAAGTCAAGGATGTGATTGAAAGGAATGATGAAAATTCATATAGAACTTATGGAGTAAGTTCACAAAAATATTAGGCATATTGAATAGACAAAGGACATAAAAACGTCTCTTTTTTCTAATTTATTTTGATTAAGGGGGCAGGGAAAGGATGGGTATCGTGTACTAACTGTTCCTAGACAAATACACCGCGGAATGGATTCATTGCCCAATGACTTACAGGAGGGAGAACTGGGTGAATGAGATGGGTTTTACTACTTTGCCTCCTTCGCGGCCTGAAGTCTGAACACATTGCTATCAGAGCAACTATAGCTACATATTGTTGAGAGGGTGCACACTTTAGATGTCAGTAGTAAGACTAGAGCCTAAAACTAAAACATTTGTCTCCCTGCTTTGTTGCTAGATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAGGTTTGTCTTTTCTACTTCTCGTTTTGATTCATAGTTGGTGAAATCTTTTATTTTGAACTCTCTTTCCACCTCGCTGTTTTGTTATTTCACCTTCTCACTCAGTCCATTATTGTTGCCACAGTTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTCAAAATTTTGGTT</genome_strand>
        <mrna_strand>CGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAG........................................................................................................................................................................................................................................................................................................GGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAG.........................................................................................................................TTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTCAAAATTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595816" ref_strand="+" ref_description="SGN-U595816 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>taaatcattcataatctactgttactaaaggataatctattgcccatccattccaagaagatgaaatagatactatccaaccccagaagctcaaacattatcaaataaagggcctgaagactttggaagacattttagacaagactttagacatagtgagacgcgttgatgatgcttcacaggaagaaacaccctcaatgaatggaggtggagtccggttgtttaggcgtgctccaccctggattcctgtttgatcacacatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="29671" stop="28516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29371" g_stop="29262" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29261" i_stop="28966" i_length="296">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28965" g_stop="28815" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="262" r_length="152" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U595816" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29371" e_stop="29262"/>
          <exon e_start="28965" e_stop="28815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAGGTACTTTCTCATTTGCTTACCTGTGTATTACACCTTGCAACTTTTGTTAACTGAGTATTCCAATGATGTTATCGTAATACTCTAGAAATCCCTTCATTTTAATAGATTTGATTCTACGGAGTCTATCTCTATTCTCATACCCTAATTATAGTATGCCTTATCATGCTAGCACTAATAACAGGACAATTGGAACTGTAGTAATTTTCCCTAAAGGCCTTCAACAACATTTTGGTCTATCATGTTTTTGCCATTGCGGTCATTACTTGATGAATAAATTCATGAATGGACACTAACAGGGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATT-CTGTTTGATCACACAG</genome_strand>
        <mrna_strand>TAAATCATTCATAATCTACTGTTACTAAAGGATAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAG........................................................................................................................................................................................................................................................................................................GGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCCTGGATTCCTGTTTGATCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570476" ref_strand="+" ref_description="SGN-U570476 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147772861|emb|CAN75902.1| (e_value=1e-121) hypothetical; (*ATH) AT5G67530.1 (e_value=1e-117) | Symbol: None | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type | chr5:26958408-26962200 FORWARD | Aliases: K9I9.9, K9I9_9; (*SWP) sp|Q9FJX0|PPIL2_ARATH (e_value=1e-116) Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49; ">
      <seq>atctgatactgtaaaacggtatcgccacaagaagcaatttcaagaacacagtcaacaagatttcttgtttcttggaaaataaaagtgttctgctaaaaccctaattcagagagattatagtcttttacaagaaaggcatcatggggaagaaacaacacagtaaagatcgaatgtttataaccaagacagaatgggcaactgaatggggtggcgctaaatcgaaagaacttaaaaccccttttaaacggcttcccttctattgctgcgctcttacatttacaccgttcgaggacccagtatgcacaaaagatggcaatgtttttgaaataatgcatatagttccatacatcaggaaatatgggaggaatccagtaactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaactctgaaggagagtatcattgtccggtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgaggcagttaaagaactgaatatcaaaacaaagaactggaaggagcttctcactgatgaagcattctctagagaagaccttataacaattcaaaatcctaatgcactggacaccaaggtgcttctagattttgatcatgttaagaaaaatttaaaggttgacgatgaagaaatacagaaaatgcattctgacccaacatacaacataaatattactggggacatcaagcaaatgctcaaggaacttggaagtgagaaagcgaaagagattgcactgcatggtggaggtgggaacaaggcacagaatgaaagagctgctgctcttgaggctattttagctgcaagatcacgtatcaaagatgacgcgaaaacaaaagaatatggtgaaggaacagcgcagcagactttcagcattgtggatgctgcatctgcgtcaggtcatggaagaagtgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="30635" stop="33033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30935" g_stop="31202" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31299" g_stop="31361" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="331" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31452" g_stop="31555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="435" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31914" g_stop="32005" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="527" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32109" g_stop="32198" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="617" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32199" i_stop="32290" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32291" g_stop="32366" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="693" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32367" i_stop="32445" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.585" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32446" g_stop="32733" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="981" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U570476" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>981</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30935" e_stop="31202"/>
          <exon e_start="31299" e_stop="31361"/>
          <exon e_start="31452" e_stop="31555"/>
          <exon e_start="31914" e_stop="32005"/>
          <exon e_start="32109" e_stop="32198"/>
          <exon e_start="32291" e_stop="32366"/>
          <exon e_start="32446" e_stop="32733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAGGTGAGTGATTCTCTTAATTACACAGGTTTTGCTGCAATTATGGTCCACTTCTTCTAATTAGTGCTTGGTACTTCATCAGAAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTG</genome_strand>
        <mrna_strand>ATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC................................................................................................TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT..........................................................................................GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG.......................................................................................................GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG...............................................................................AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAATATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGGTCATGGAAGAAGTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563055" ref_strand="+" ref_description="SGN-U563055 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|17064880|gb|AAL32594.1| (e_value=5e-80) peptidylprolyl isomerase (cyclophilin)-like [Arabidopsis thaliana]; (*ATH) AT5G67530.1 (e_value=5e-82) | Symbol: None | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type | chr5:26958408-26962200 FORWARD | Aliases: K9I9.9, K9I9_9; (*SWP) sp|Q9FJX0|PPIL2_ARATH (e_value=4e-81) Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49; ">
      <seq>ggggaacacatggtgatttgaacattgagcttcattgtgacataactccaagggcatgtgagaacttcattactctttgtgaacaaggttattataatggagtagcttttcacagaaacatccggaatttcatgattcaaggtggtgatccaactgggacagggaaaggaggtgagtcgatctggggtaagcccttcaaggatgaagtgcactccaagttgctgcattctggtagaggtgttgttagcatggctaattctggtcctcactcaaatggctcacagttcttcatcctgtacaagtctgccactcacttaaatttcaaacataccgtctttggtatggttgttggaggcttgccaacactttccaccatggagaaagtccctgttgatgacgatgaccgacctctggaagaaatcaagataataagtgtagaagtttatgtaaacccctatgcagagcttgatgaagaagaggagaaaacaaacgatgacaacaaaactgaagatgcagacaatgagaaggttggatcatggtacagcaatcctggaactggaacctcagagattcaagctgttggcagtggaattgggaagtatttgaaagccaaggctgcacaggctgattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="33786" stop="36284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34082" g_stop="34205" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34206" i_stop="34336" i_length="131">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34337" g_stop="34625" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="413" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34626" i_stop="35658" i_length="1033">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35659" g_stop="35766" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="521" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35767" i_stop="35871" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35872" g_stop="35984" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="634" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U563055" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34082" e_stop="34205"/>
          <exon e_start="34337" e_stop="34625"/>
          <exon e_start="35659" e_stop="35766"/>
          <exon e_start="35872" e_stop="35984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAACACATGGTGATTTGAACATTGAGCTTCATTGTGACATAACTCCAAGGGCATGTGAGAACTTCATTACTCTTTGTGAACAAGGTTATTATAATGGAGTAGCTTTTCACAGAAACATCCGGTAATTATTACCTTTTTTACTTGAAAATAGTTGTAAAATCTTTTTCTTTATCAAAAAAATAAAATAAATAAATCTCTGTTTATCAATAGGAAATATTGAATGTCAAGGAACTTATTTGTCCACTTTTGCAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTGGTTAGTAGGAAGAGTAACTCTATATTTAACTCTCATTCTTCAACTTAGATCTCGAATCATGCCTTGGTGAATCAATGAATATGGTTTGATTGATTAACACTTTAACCAACTTAGGGAGAAGAACTACTATAAAAGACTAGTCATACCAGCAATAGCCGAAATAGCTACTCCATCTATGTGTCTGAAAGCTATGTGGTTAGTTCCCATTGTTGAACCAGTATTGCGTGATTAGACATTGATATACCGAATACTGATACTTCTCAACTATAGTGATCGATCTGATATTTCTCTAATAGGGATTGCTTATTAAATCATAAGAAAGAGTTTCCTAATCCAATATGATCATGTCAAGAATTTCAGTTGAGCTGCTCTGCTTTTGGGATAATTTTTTATTTTTTCATTAAATTACTAGAAACAGCTCATAATCAAAGACCAAACAAGTCAATAATCTGTTTTGACCTGTTAAGCTTTGGGATAAGGATGAGATTTGAAGATCTTTTCAAGTAGACCTGTACTGCATGTGCGTGTTAATTTATCTTCCTCCATTCTTGCAGTCAGTCATCATGCTTAGCTTTTTCTATCTGTGGTTATCAAAATGGTATGCTAACAATTTTTTTTAAAAATGAATTACTTGTCTAAAGAGAAATAGGGGGAAAGATCTTTCATTCCCAAAGTTCGACTTGATTTTCAGGTTTCAGTAGAAAGTGGAGTGATAGGATCATATCAGGATATGATACATATGTAAAGAGCTGTAAAAAGACTGTAGTTGTGCCATTTCTGCCAATTGTGAGCTGTTGGGTTGTTTTATACCGTCACATTTAATACTTTCATTTTCCAAAGAAGACTTTATGTTCTTCCAGATATCATTTATTTGTTCATTTGTCTGGCTATTTTTGTTCAATCCTCCATTTATCTTCATTTCTGTCCAAGAAAGCCCAGACTTGAAAATCTTGCTGCTTTTTCTCTGCATATCCAGTATTTTCATTTCTCAATCTAGATATTTTTTGAACCTTTTGCTTTACTGTCTGTGCAGGAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAATGTTAGTATTATTCTTTTTTTTAGCCTTTCAATGACATCCATTTTGCTTGTTTTGTTGGATCTGTTAATACTCTCTGTTTATCTCTTTTCTCTTCCTGTGTTCCAGGAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAA</genome_strand>
        <mrna_strand>GGGGAACACATGGTGATTTGAACATTGAGCTTCATTGTGACATAACTCCAAGGGCATGTGAGAACTTCATTACTCTTTGTGAACAAGGTTATTATAATGGAGTAGCTTTTCACAGAAACATCCG...................................................................................................................................GAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAAT.........................................................................................................GAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCCAAGGCTGCACAGGCTGATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603807" ref_strand="+" ref_description="SGN-U603807 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|158962472|dbj|BAF91723.1| (e_value=4e-27) putative; ">
      <seq>gatgctttgaaccaaaatcactaaaggtactactactagtcttgtacatttattgtttgatgtggcaagagagatacgtaacccttttagtgttaaatggatactttgtttaggttagttagccttcaacaacaacaacaacaacaatctgatcaatactcttttaactccagcagaacttcaagcagctctagatcttctaacaaacaaaacagcacatacaattatcatccacatcataatcatcaagacgaagaatgcttcaactttttcatggatgaagatgatttctcttcttcttcttctaaacacaacaactatcctcctcctcattacaatcaatatcaacaaatctccacacccacaactacaagcagtaccccaacacatcaatctcaatctcaatatgatcatcaattctccccagcacgtgatttaaatctcgaattcgcttcctcattttctggaaaatgggccacagacattcttctagaaacttctcgtgccatagccgataagaacagtacacgtgtccaacagctcatgtggatgttgaatgagctgagctccccctatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="41007" stop="42186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41307" g_stop="41886" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U603807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41307" e_stop="41886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTGTCCAACAGCTCATGTGGATGTTGAATGAGCTGAGCTCCCCCTATGGAG</genome_strand>
        <mrna_strand>GATGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTGTCCAACAGCTCATGTGGATGTTGAATGAGCTGAGCTCCCCCTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566455" ref_strand="-" ref_description="SGN-U566455 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|15229628|ref|NP_190557.1| (e_value=3e-138) glycosyl hydrolase family 43 [Arabidopsis thaliana]; (*ATH) AT3G49880.1 (e_value=2e-140) | Symbol: None | glycosyl hydrolase family protein 43, contains similarity to xylanase GI:2645416 from (Caldicellulosiruptor saccharolyticus) | chr3:18507234-18509698 FORWARD | Aliases: T16K5.230; ">
      <seq>gtgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattggtacggtgagtataaagatgggccaacgtatcatgctcacaaaaaaggagcagcacgagttgatgttattcggtgttggttgctattcatcccaagatttgtggacttggaaaaatgaaggaattgttttggcagcagaagaacataatgagacacatgatttgtacaagttaaatgtactggagaggccaaaagtaatttacaatgagaagacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacaaaagctttgactggcgtagccataagcgacctccccactggtccatttaattatctgtacagtaaacggccccacggatatgaaagcagggatatgacactcttcaaagatgatgatggtgttgcatacctcgtttactcctcagaggacaacagtgagcttcatattggtccacttaatgaagagtacatggacgtgacccaatccatgagaaggattcttgttggacaacacagggaagcccctgctttgttcaaacatgaaggaacctattacatgatcacgtcaggttgcactggttgggctccgaacgaggccctagctcatgcagctgaatcaattatggggccatgggagaccattggaaatccgtgcatcggtgggaacaaagtttttagagaaacaactttctttgctcagagcacatttgtgcttcctttgcctgagctacatggttcctttatttttatggcagatcggtggaatccagctgacttgaaggattcaaggtatgtttggttacctttaagagtatcggggccagtagaccatcctcttgagtacaattttggcttccccttatggtccagagtgtctgtttattggcataaaagatggagacttccttatagatggcaggaaataaattgagtagaggaatcgaaaatcatttgtacaaatatgttttttcaacttttgggttttctaataatttttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="49261" stop="45425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48962" g_stop="48776" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48775" i_stop="46647" i_length="2129">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46646" g_stop="45725" g_length="922"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="1110" r_length="923" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U566455" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1109</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566455" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48962" e_stop="48776"/>
          <exon e_start="46646" e_stop="45725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGTTGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTA-TCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCAT</genome_strand>
        <mrna_strand>GTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATTCGGTGTTGGTTGCTATTCATCCCAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566456" ref_strand="+" ref_description="SGN-U566456 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|15229628|ref|NP_190557.1| (e_value=2e-97) glycosyl hydrolase family 43 [Arabidopsis thaliana]; (*ATH) AT3G49880.1 (e_value=2e-99) | Symbol: None | glycosyl hydrolase family protein 43, contains similarity to xylanase GI:2645416 from (Caldicellulosiruptor saccharolyticus) | chr3:18507234-18509698 FORWARD | Aliases: T16K5.230; ">
      <seq>gaggaagttctgtggagagagaaagagaaggagatcggggaagtaatcttagataggtggaatttagggggccaagggaagatctttggtctcaagttatcatcattattaacattccaagatccaataaacagcttattctataacctttttctactccttaacccttatcttccccttcaatttggtaggttggggcaagatattgcagaaattaacttttcaacagctagttaagcagctgatcttgaggggaacttcatatgcgcagaacttgatgattagctcaactgactgagcaacttcgattgaaacatatgtcgagagatttcgttcaatcttcagtttggttgttttcggcattacattaagataaaaagggaacaaaatgaggttgaagaacaaatccaggaatctaacgactatacgttgctatccaggacgcagatgctcattttcagttctcttatggagtatagtcggttgccttgttttacttaatctatattgctttattttcgaaaaggatgcaccgcatgggggtgcacacttacgtattaaccagcaccaacactttcgtgagcttgaagaggttgaggaggataatatacagatgccaccaccaaggaagcgatccgcacgtgctgtcaaacggaagcctaagcgaccaaccaccttgattgaagaatttcttgacgaggcttcgcagctaaggcatgtcttttttcctggtctaagaactgcaatagatccttgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattggtacggtgagtataaagatgggccaacgtatcatgctcacaaaaaaggagcagcacgagtaagtcctggatttcatacacttttataggttgatgttatcggtgttggttgctattcatccaaagatttgtggacttggaaaaatgaaggaattgttttggcagcagaagaacataatgagacacatgatttgtacaagttaaatgtactggagaggccaaaagtaatttacaatgagaagacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacaaaagctttgactggcgtagccataagcgacctccccactggtccatttaattatctgtacagtaaacggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="50983" stop="46074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50684" g_stop="50325" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50324" i_stop="49356" i_length="969">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49355" g_stop="48746" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="970" r_length="610" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48745" i_stop="46647" i_length="2099">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46646" g_stop="46374" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1243" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U566456" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1243</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50684" e_stop="50325"/>
          <exon e_start="49355" e_stop="48746"/>
          <exon e_start="46646" e_stop="46374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGCTGTGGAGAGAGAAAGAGAAGGAGATCGGAGAAGTAAGCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGGGTAAGCTTGTTTCCACCCACTTTTACCACAATTTGACTCTTATACTTCCCCTTTTTCTTCTTCCTTTATGAGAATTAAACTATTTCAATTAACTGCCTTGCATATTTTTGTCAAGACTTTGTGGGCTTTTTGCTGATAAAGGTTCACAAACTGTGGATCTTGAGCTGGTCAATGCTGAAACTTTTGCTTTTATGTTAATTGATAGTCAAGATCATAGAGGATTGCAATTGCATCGTAACAGACAATTTGTGTAGATAGTTTATGTTTTTCTTGTGATAAAGTTGCAATCTCTCGGTTGATATTGAGAAGCACATTGTAGCAGCAGGGATTGAAGTTGGAGTTTAAGCTGAGACTTATCTCAACTCCCACAAAAAACGATAAAGAAGAAGATGCAAACCTTAAACCTTCCAAACATTCTATGTGCGGTTTATACTTCAATAACTTTAGTAGGGGGATTGGCCTCTATTTTATAGAGGGCCTACCCATCACAAAGTTATAGGTGAAATGGGTCTCAACTCACCTATATGTAATTGGGATTAAGGTTTATGTTTTATTTAAAACTTGGACCATGCCGTATCCTTTCAAGCTATAGTCAATGTAGAATTGAATTCTGACAATCTAATCAAATATTCTGTTATAAGCGATTAAGAAGTTGTGTATGCTCAATCATAAACATGTTCCATTTGTTTGTGTCTTTTGTTGGTGCTCAAGAAATCTGCTAGAGTGATTTGATTGTGCATGTATGATATTGTCGGCAGTCAACTATGATGGAGTTATAAACTTCAGAAAACTTGATTTAGTCATTTCTCTGCTTGTTGATACAAGTTACACAGTTTCATTTATTACAAAATATTTACCTTTACTGAGAGAGATGTGTGGGTACATTCAAACACAAGTACGTATTGTATATGCTCCACATAAACTGGCTATAGTTCTGAGTCTCCATTGGTTTGATTTTCTTTACTGCAGCATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTCGAAAAGGATGCACCGCATGGGGGTGCACACTTACGTATTAACCAGCACCAACACTTTCGTGAGCTTGAAGAGGTTGAGGAGGATAATATACAGATGCCACCACCAAGGAAGCGATCCGCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGTTGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCC</genome_strand>
        <mrna_strand>GAGGAAGTTCTGTGGAGAGAGAAAGAGAAGGAGATCGGGGAAGTAATCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTCGAAAAGGATGCACCGCATGGGGGTGCACACTTACGTATTAACCAGCACCAACACTTTCGTGAGCTTGAAGAGGTTGAGGAGGATAATATACAGATGCCACCACCAAGGAAGCGATCCGCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594162" ref_strand="-" ref_description="SGN-U594162 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147806444|emb|CAN65326.1| (e_value=4e-26) hypothetical; (*ATH) AT5G67550.1 (e_value=5e-20)  Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At2g25270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_549958.1) | chr5:26963980-26966387 REVERSE | Aliases: K9I9.11, K9I9_... ; ">
      <seq>ggaaaatagcgtaggaacaatttgtgacccttcttctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaattgaagatctgaaatatgttctgtcaaaagtcacatgttatgaaggaaattcttcaggaaattgcgcgggtgaaggaagattcattccacaggcctcatctgtgatattattcgcttatactcaatctattcaagacctgatagaaatattccctgatttgctgagcctaagtcagtgctccaaagtaaaacaagcattcgccaacattttacagtaccagtgcaggccatttagacgttcagcacgagtactatggtcatctatgttgtcactctccattctcatgatacttttagtactaacattgatagtaaaagctcaccaagaaactggaagaagcttcgatacatgctccattactcctaaaaaagtcgaaacaataccaaaaaacttgccagattgcagtaattctgcaggcaatgtacagaatatgtagatggtttgcatttttttttctttttttgtagttatagatggaagtatacagtatacccattcccctgaagtcgtaagacgccaaaaaaatgggggtttaagttatagaaaatagaaatagagaattcttactaaacttgtacttgatatattgttcttgtcatgtacacgacttaataactgtgtacatatttgacatgaacagtgattgatgggtactagaggctaactttggccttgtaaatttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="55372" stop="53899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55072" g_stop="54964" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54963" i_stop="54868" i_length="96">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54867" g_stop="54199" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="779" r_length="670" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U594162" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594162" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55072" e_stop="54964"/>
          <exon e_start="54867" e_stop="54199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATATGTAAGTTACAAGCTTTAACATACTGAACATATATAAGGATCTTTATGTCTCATGTCCAGTGAAAATTTGGAATTTTTTTTTAATGTTTGCCTGTAGGTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGG-TTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTC</genome_strand>
        <mrna_strand>GGAAAATAGCGTAGGAACAATTTGTGACCCTTCTTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT................................................................................................GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAGTGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTCGATACATGCTCCATTACTCCTAAAAAAGTCGAAACAATACCAAAAAACTTGCCAGATTGCAGTAATTCTGCAGGCAATGTACAGAATATGTAGATGGTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGGTACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585393" ref_strand="+" ref_description="SGN-U585393 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147806444|emb|CAN65326.1| (e_value=7e-22) hypothetical; (*ATH) AT5G67550.1 (e_value=6e-15)  Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At2g25270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_549958.1) | chr5:26963980-26966387 REVERSE | Aliases: K9I9.11, K9I9_... ; ">
      <seq>cagctgtcacacaatgcatcattatcttttagaaagtattttcatgtgtataaaactagagattctgtgaaatttgataatcttatatgagttataagctattacacgatttctactttttctagctgtcttcttgcttttgattttcctgtatagtcagttccttctaacgtatgtttaaatcgatcatcaatgtcatggttagactaatggaatgctgctttggctcagttttactcatttggcactggcctcttggatttataataataatcctctgctgctggattttgacaactctgagttgggtgctgactggttttgatttctttttccatacctttgcagatgacacttgctcagctttgaaggactttcaacagaatcctcagaacaatagcttgcaaattatacttccctgtgcaaatcctggaacttctgacaaaacgttggagcagattggcgccacggttcataatttcattactcaggtactgttatctataatatacaagaaacaaggataggagcttacatatattcttagcattatctttgtgttttcgatttccagcttaattctaagctgagagaggtacaaggattaggattaaatgatatcggggaaaatagcgtaggaacaatttgtgaccccttctctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaatttgagatctgaaatatgtaagttacaagcttttacatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="56164" stop="54638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55867" g_stop="55600" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55599" i_stop="55514" i_length="86">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55513" g_stop="55442" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="340" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55441" i_stop="55357" i_length="85">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55356" g_stop="54938" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="759" r_length="419" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U585393" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55867" e_stop="55600"/>
          <exon e_start="55513" e_stop="55442"/>
          <exon e_start="55356" e_stop="54938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAATGTAAGTAAGATTTTGATACTTCTGTTTGACATAGAATCGCTTTTATATTCTCAAAGCCTAATTAAACAGCTCTTATTAACTACTAGAATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATACGTGAGCACAAATTCTTCTCTTCCTCTCAGTAATTCAGCTTAATTTTTCATTTTATACGCCGTAACTTTAGCAAATGCTGATGCAGCTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATATGTAAGTTACAAGCTTTAACATACTGA</genome_strand>
        <mrna_strand>CAGCTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT......................................................................................AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC.....................................................................................CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTTGAGATCTGAAATATGTAAGTTACAAGCTTTTACATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585396" ref_strand="+" ref_description="SGN-U585396 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157330197|emb|CAO44702.1| (e_value=3e-40) unnamed; (*ATH) AT5G67550.1 (e_value=1e-26)  Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At2g25270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_549958.1) | chr5:26963980-26966387 REVERSE | Aliases: K9I9.11, K9I9_... ; ">
      <seq>gtgccgaattcggcacgaggcacacaagaataaccaaaagtttcttactagccacaagctatcctaaccttaatgatcaagtcaaggaatgaatttttctcttcttttataccacttttactttttatgttttgcctcaaaaatattcaacatcatactatatcatcatgccaaaattacatggaggggttcttcttcctttcattcttttattaatttccactaatataattgcccagaaatctcttgtatttggcttcattgatcgtgatgaaatttcaaaaagacctgatcctctcagacattttaagtcatataatgggagttataatcttggtgacaagcactattgggcttctgcgggtttcacaggcatacatggatatgcaattgctgggatttggttgttagttggtttggggttttggaagttacatgatttttaagtattttcatgccaattcaagtatttcaatgattgaacattcgccttcttattatattttgatgttctcgctggttgttctgtttacaattcttgccatagttgcaagctgcgttgctttggctgcaaacaatggttttgaacatagagtagaaaagcttcgccgaacaatttttgatgctggtggtgatacatgtcaatccatcagaagggtagtaaaggttttgctaagtatgcaaactcttttaagcccttataattttcaggcagaccagacgttgaacatgacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="57880" stop="55804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57579" g_stop="57242" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="356" r_length="335" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57241" i_stop="57146" i_length="96">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57145" g_stop="56958" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="545" r_length="189" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56297" i_length="661">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56296" g_stop="56104" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="738" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U585396" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57579" e_stop="57242"/>
          <exon e_start="57145" e_stop="56958"/>
          <exon e_start="56296" e_stop="56104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCTGTAAGTTTTTATTTTTTATGATGAGATTAAATTTTTTTAAAAAAGGGAATTAGCTGCTGATTTGTTTTTTTTTTCTTTTCTTTGTTTGTTTATCAGTCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTT-GGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCATGTAAGTGCTTTTGCTTGCTTAATTTTTGGTAACACTACTATTTAAATAAACATGTGCTCTGTTCCTATAGGAAATACATTAAGCAATCATGTCATATCAATCAACAAATAAGTAAAAAGCGTATAATCTCACAAAATAGTACTTTGGGCATTCCCTTATTTTTACAAGGCATAATACATAAGTTAAGCGCCATGATAACTCTATTACCTTTAACTTTGCGTGTGCACAAGTAGATATTTAAAATTATAAAAATTTGAAAAAATAGACACATTCATCCTACATAGCACCCGACATTGCAATTTTGCATCCTACGTGTATATGCCATGTAGGACACATGTGTTTACTTGTGCACAATCAAAGTTGGACGACACAATTATCCGCTGAAAACCAAGTTAACGGTCATATTTATATATTATGGTTTTTCATAACAGTAAGCTTTCAAAGAGGATTATGATTTAGAACTCATAAACTAAAAAAGAATCTTAGCTCCACCTCTAAATCAAACACATTTTATTGTCCCTATCTTATATTGATGAGGATTAGTGACCTATATATAGGAATAAAGCAATGGAGTACTACAATATTTGATATGTCGTTTATGGCTAAGTTTGATAAGAAAAGACTGACTGATGTGTCTACTACTTTTTGTTTTGTTTGGAAGAGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCTTATAATTTTCAGGCAGAGCAGACGTTGAACATGACAACC</genome_strand>
        <mrna_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATAC--TAT-ATCATCATGCCAAAATTACATGGAGGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGTGATGAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT................................................................................................TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAAGTATTTCAATGATTGAACATTCGCCTTCTTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAAGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAGTAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCTTATAATTTTCAGGCAGACCAGACGTTGAACATGACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571254" ref_strand="+" ref_description="SGN-U571254 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|147858134|emb|CAN83936.1| (e_value=3e-96) hypothetical; (*ATH) AT3G49870.1 (e_value=5e-95)  Symbol: ATARLA1C | ADP-ribosylation factor, putative, similar to ADP-ribosylation factor-like protein 1 (SP:P40616) (Homo sapiens); ARF3 ADP-RIBOSYLATION FACTOR,GP:453191 Arabidopsis thaliana; contains domain PF00025: ADP-ribosylation factor family ... ; (*SWP) sp|Q5ZKQ8|ARL8A_CHICK (e_value=9e-69) ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A; ">
      <seq>tgcaccaggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatgttttttttcttgccatttttcgtctcaactctctctaattgtgtttgcaattcctcttatactttttacttgtctgctgcacgagtttgtgtgaaaggaacggatctttttaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69372" stop="74192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69665" g_stop="69819" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="237" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="392" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="554" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73892" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="938" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U571254" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>938</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69665" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</genome_strand>
        <mrna_strand>TGCACCAGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601984" ref_strand="+" ref_description="SGN-U601984 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagccagatttggctggacattttccacctaaatccttgtagcttttgacttttctaagtttcttgcaaaaaagtgaattgtgttccatcggagtcattgttgtagacagactctttgcctgttcaatgattgaccacctcgtatcagaaaaatcaactctatatatgtggttggaacaccttttaatatttttgaatggactagacactgactgatgaaagtgaaaccattgatgcttccccttgacctttcatcatatacaaaactttttcctgaggttcaactgggtgattccagaaatgacgaccaaaaataacttatatttgacagattttacaatgtcaccatccattattcagtcttgtgtcatcccaccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71254" stop="72231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71551" g_stop="71931" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U601984" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71551" e_stop="71931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</genome_strand>
        <mrna_strand>CAGCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571256" ref_strand="+" ref_description="SGN-U571256 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|22331720|ref|NP_190556.2| (e_value=2e-39) ADP-ribosylation factor, putative [Arabidopsis thaliana]; (*ATH) AT3G49870.1 (e_value=2e-41)  Symbol: ATARLA1C | ADP-ribosylation factor, putative, similar to ADP-ribosylation factor-like protein 1 (SP:P40616) (Homo sapiens); ARF3 ADP-RIBOSYLATION FACTOR,GP:453191 Arabidopsis thaliana; contains domain PF00025: ADP-ribosylation factor family ... ; (*SWP) sp|Q6NZW8|ARL8B_DANRE (e_value=5e-34) ADP-ribosylation factor-like protein 8B OS=Danio rerio GN=arl8b; ">
      <seq>agactgcagtttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgnctcccttaagagttttaacaaattttaaggacctcgactgtaatttgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71659" stop="73259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71950" g_stop="72242" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="326" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="72959" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="780" r_length="454" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U571256" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71950" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTG-CTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATA</genome_strand>
        <mrna_strand>AGACTGCAGTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGNCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCGACTGTAATTTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588595" ref_strand="+" ref_description="SGN-U588595 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118481399|gb|ABK92642.1| (e_value=2e-39) unknown; (*ATH) AT3G49870.1 (e_value=2e-41)  Symbol: ATARLA1C | ADP-ribosylation factor, putative, similar to ADP-ribosylation factor-like protein 1 (SP:P40616) (Homo sapiens); ARF3 ADP-RIBOSYLATION FACTOR,GP:453191 Arabidopsis thaliana; contains domain PF00025: ADP-ribosylation factor family ... ; (*SWP) sp|Q6NZW8|ARL8B_DANRE (e_value=6e-34) ADP-ribosylation factor-like protein 8B OS=Danio rerio GN=arl8b; ">
      <seq>tttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgctcccttaagagttttaacaaattttaaggacctcaactgtaatttgatatacatgaattcttattttatagcctcnagctaatttggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71659" stop="73300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71959" g_stop="72242" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="317" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="73000" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="811" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U588595" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71959" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="73000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</genome_strand>
        <mrna_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCNAGCTAATTTGGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583701" ref_strand="+" ref_description="SGN-U583701 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147859636|emb|CAN83117.1| (e_value=6e-38) hypothetical; (*ATH) AT3G03360.1 (e_value=8e-28) | Symbol: None | F-box family protein, low similarity to ribosomal RNA apurinic site specific lyase (Triticum aestivum) GI:6505722; contains F-box domain Pfam:PF00646 | chr3:795225-796925 FORWARD | Aliases: T21P5.22, T21P5_22; (*SWP) sp|Q9LYZ4|FBL79_ARATH (e_value=4e-27) F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana GN=At5g02910; ">
      <seq>tcaattttttctagctttagaaaaacggctgcttctacagcaccttgtttcttacaaagaaaatgggcaggctcttaataagaggggtgcgtttggcggcaactatataaaacaatttggggaggctcaattatcatcacgagtaaattttgggttctagggtttcaaatttgatcattcaccattgtcgacgaaacacgatggtttaacttctgttgagaggcgatttatttgttcttcctggtacagcagtggttaagcatatagaggtctctcattcttgcaatgaactcggaaaggaaatgtagtgtgacaaccatgggcgaccaagaccaatctcctagcagttctggtgatgatggacattctaaaggccagattcttgaaaacccacctcaggaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgctctaattgtacaaattctctctctattgcccatacaagatgctttcagaacatctgttctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgacaaccgaaataccaattggtccaatagagagaatgtgattaataagttcatttccttcacagacaatgtactacctctcctttgctgctctaatattaaaaagttctgtctatatttccgattttgccttgttgcttcttatagttccaaaattgacaagtggcttgaaattgttttgaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaagcccctatgtcttgccacaagttctctgcaacaactcatccattgtaaaatttaattgcgagttttgcagaataccagaagaatgtgtactaaactggacatccctgaagagtttgacactaacctatttgtttcttcgggacgaacatgttgaacaaatagtaacaaattgtcctcagttggaattgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcatgcccatcctgatggagattggggtccatttggcggtgattgttccttcgaagtagttgccccatatattcaacatctaaagatttcggggcattttgataatgtggaaataagacttggggacctttcatctttagtcattgctgatcttactttctctgttgatattgtatatgacaataccgtggaacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtggcggtgatagaaaagaagaaagatgttccatttctgatgcggaagtgcaaacggttgacgataaattcttggatttcaaaaaatgccattctcggcataggtgttctcttaaagtcaactccttatctggagaatttgacgatacttcatgaagagggagatttctttgtctgggatgaatacttggaagaaaaagtgtttgattggttaggagacaaatccctctccttgcatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="88613" stop="83410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88313" g_stop="88071" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88070" i_stop="87541" i_length="530">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87540" g_stop="86461" g_length="1080"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="1323" r_length="1080" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="84572" i_length="1889">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84571" g_stop="84404" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1324" r_stop="1491" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84403" i_stop="83793" i_length="611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83792" g_stop="83710" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1492" r_stop="1574" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-U583701" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88313" e_stop="88071"/>
          <exon e_start="87540" e_stop="86461"/>
          <exon e_start="84571" e_stop="84404"/>
          <exon e_start="83792" e_stop="83710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTTTCTAGCTTTAGAAAAACGGCTGCTTCTACAGCACCTTGTTTCTTACAAAGAAAATGGGCAGGCTCTTAATAAGAGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAGGTAAGTTTTCAGCCAAAAACTCTCCAGTCTTTTTTATGCTGAATATGAATATAATACACATACATGTGTTGTGTCAGTGAGAACAATTTACAATACTTTTGAAAACCACATACCAAGAAATGTGTGTGCATTTAAAGTCAAATTATAATTAAGATAGACTAAACAAAGTCAGAATACTAAGGGGGAAAAAAAGAATGACACAGTAACAAAAAGAAAAAGATTCAATCTAGACAGCTCTGAATCTCCAGAAGAACTTAAACAATATAGAGAAAATTGAGAGCACGATGATGCAGGTGTAAAACTTGTCTCTGTAAGATGTATTGCTCTATAGTAAAACAGACGTAAAAAGGTAAAATTGAAATAAGATAGAAGGTCTACCTAATCTTGGAGTTTGATACCAAGGAAACACTTGTCTAGGCTAAAAGGCAAGTAATGGTAATACTCACTACATTAAGTAAATCATAGAGTGACTAGTTGAAGAATATTCTTTGAATAAGGAACTTTTTAGATGAGCCAAATGCACCCAAACAAATCAATAGCCAAATGGCCACTCGTTATTAGGATTGATGAGTGAGAAGGGACACTTGCATATATAGGTACTCTTTTGGTGCATTAATGAGTAATCACTCGTCGTTGGTGTCAAATCCTCTGTTGTCGCTGGCATAGGTCCCCACACTACTCGAATATCCCTGATTTGCTGTGAATGAAAAAGTAGTTCATATCCTCTATGAACCTCTCACATCATGAGCACCTACTACAGATGTTGACCCTCTTCTTTGGAGGTTCTCCTGGGTTAAACAAGCTCCTTAAGGCACCAGCCAGGTAAAGCAAAGATCTTTAAGCATCCTACTTCCAGGGGAGCTTTGCTTTTCCAAATGCATTTCATAAGCCAAAATGTGCTACTGCCAGAAGATCTCCTAGATAGACTAATATTCTTTGATCTTGAAGTTACCTACTGTGTTTCCTTTCCACAAAAGAGATTCAGGACTGGAAGATAAAGGGGGGCAGCTATGCAACTTATATAAAAGTGAGGACACGGTTAAATTCACAATCATTTTTGCTGCACCAGAGACCAAAAACGCAGTCCTGTTCAGATCACATTTCTGAAATTGTAGCATCTTGTGTTTGTGCAATACTGTAAATATATGGATACTGCATCTTCGGTGGTGTTTGGACTAGCCAAACATCCTCCCAGAACTTGTCTCCTTCACATTTCCAACTTGAAGAGGTGATGGCGAAAAAATAATTTTTGTGGACTCTAATATGCCTCCATATACCATAGGGACTGTTGCCGAACCTGGTCAGTTATCCAAGGGATCAGGCATGCATTTTTACCATAACGACACCTCCAAAGTGCCTTCTCTTCATTACTACATCCTCATAACTACTTCTGCAGTGAGCTGTTGCTCTGCATCTTCAATTTCTCTACTCTTAAGTTCTCCCTGCCTTCAAATTTGCGGTGACTGATTCCCAACTTACCAAGTGAAGGTTCTGTATTCTCTCTCTCTCTTGCAGAAGCAATTCCTATGTAGTTTGTTTGTCCAACCTTTTTGTCACTGAAAACATGCAGTGGAGCAAAGAGATAGGGTATATGGGATATTATTCTGAACTTAAAACAGTTTTTGTTGGATGTTATCATCACACAGTAGCTTTGTAACTGAATTCCTTGTTAACTATGTTTGTTTTCTAATATATTATAGAGACTATGGGGAAGTTCTGAGGCTAGAAAAAGATCAAACTAAGACCATAGAAACATTCTGTTGTCGGGTGAAGGGGTGTGAAGGGTGAAACTTTAACCCATGAGTTTGGGATGTTTTTAAGCCCTATAAAATTTGATATCGTGATACTTAATGTACTTACCTTCTACTCTGCTTCTCTCTCCCATTTAGATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAGGTATGTTTTCAACTGATTCTTGCTTTGAGATACCTTTTATATTCTTTTTCACTCTTTAATTTTTTCCCTTGTGTTTGTTTCATTATCCTTTACATTTTCAATATCACGTTTTGAGGCATAATATAGCCTTGGATATCAAGCTGTTTTATGTATAGCGCCCTTTATTACTGAAATTGTTGCCCATCAGACCTACATTTTCTAATTTCTAAATATATGCGACCATAGTGTTGCTGCACTGAAGACTCTTCTTCCTTTTACAATGAGTTATTAGCTTCTTGCTTTTGTTTGGCATAAAATATTACATTCAATCGTCTATTGATCTCCAACGACATCAATGGGAAGTCTTCAACATTTTTAGTACTTTCCACTAAATTACTATCAGTGGTCTATCTCAATGTAATTATACACCTTCTGACTAAAAAGTACTTTCATCTGTTTGTCTAATGTTTGACTACTATGTTGCTTATATGTCCGTCTCAGATTCTCTTCTGTGTGTTGTTCTGCAATTTCAGTACCATAAAATTCCATTCTAAAATCCATACATTTACTCAAGTATGTTCCACCTGTTACACTTACACTTAACCTGATTTGTGGTTCTTCTGTATCCGTAGGGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</genome_strand>
        <mrna_strand>TCAATTTTTTCTAGCTTTAGAAAAACGGCTGCTTCTACAGCACCTTGTTTCTTACAAAGAAAATGGGCAGGCTCTTAATAAGAGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAAAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580455" ref_strand="+" ref_description="SGN-U580455 Tomato 200607#2 [45 ESTs aligned] (*GB) gi|147858131|emb|CAN83933.1| (e_value=6e-60) hypothetical; (*ATH) AT5G67590.1 (e_value=5e-48)  Symbol: None | NADH-ubiquinone oxidoreductase-related, contains weak similarity to NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-21KD) (CI-21KD). (Swiss-Prot:P25711) (Neurospora crassa);... ; (*SWP) sp|Q5XIF3|NDUS4_RAT (e_value=2e-18) NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4; ">
      <seq>ggcaaagtaatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctctccaaaagaaattagcgtgtcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90401" stop="95652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90701" g_stop="90919" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="308" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="438" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="468" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95352" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="804" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U580455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90701" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAA</genome_strand>
        <mrna_strand>GGCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591154" ref_strand="+" ref_description="SGN-U591154 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147858131|emb|CAN83933.1| (e_value=6e-60) hypothetical; (*ATH) AT5G67590.1 (e_value=5e-48)  Symbol: None | NADH-ubiquinone oxidoreductase-related, contains weak similarity to NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-21KD) (CI-21KD). (Swiss-Prot:P25711) (Neurospora crassa);... ; (*SWP) sp|Q5XIF3|NDUS4_RAT (e_value=2e-18) NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4; ">
      <seq>gggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaaagcatttccggggtgttctgtacttgtgggacattgtgtcgtgtcaaaacctagtagccttgttttctctccaaagaaattagcgtgtcaaatacttacgactgtgatttgtcggtgagtttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90450" stop="95686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90749" g_stop="90919" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="260" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="390" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="420" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95386" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="785" r_length="365" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U591154" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90749" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGA-TTGTCGGTTGAGTTTGTT</genome_strand>
        <mrna_strand>GGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAAGCATTTCCGGGGTGTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAAC-CTAGTAGCCTTG-TTTTCTCTCC-AAAGAAATTAGCGTGTC-AAATACTTACG-ACTGTGATTTGTCGG-TGAGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592850" ref_strand="+" ref_description="SGN-U592850 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggtataatttcttttctttatgtctcttcgctaatatctattattttgtcaggtcatttaggtgtatgaaaaacttcattgtaggttaccaatttattagggcttctatagcagatccatgggttccgctatttagggttagcaaatgatttgggaaatggatatggaggatccatatagttagaatcaattgatttgaaattgatatagttgattgattgcttttcatttttgcctttgtgaatttatgttacctctaatccgaagactattcctttttagccctccttttgtcttcctcgctcctattcaatgatatagaagagaccatagctgcttagacacttgtgacaagtaaaaagttgtaagttttcatggtagggagtagtttctgcttggcaagtattaagttgaacttggaccttctagagcttgaattgataagccttaatatcagaccccagcttgnattaatgnaaactttttccccacggaggtttttcatccntttctgcacaaatttagttnatatagatttcttatcaaatctataatctgatctatatcatctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90462" stop="91791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90762" g_stop="91491" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-U592850" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90762" e_stop="91491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTT-ATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATA</genome_strand>
        <mrna_strand>GCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGNATTAATGNAAACTTTTTCCCCACGGAGGTTTTTCATCCNTTTCTGCACAAATTTAGTTNATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1036" PGL_stop="5106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1036" e_stop="1352"/>
            <exon e_start="1487" e_stop="1554"/>
            <exon e_start="3701" e_stop="3811"/>
            <exon e_start="3903" e_stop="3989"/>
            <exon e_start="4088" e_stop="4296"/>
            <exon e_start="4405" e_stop="5106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.975"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="1036" e_stop="1352" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1487" e_stop="1554" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3701" e_stop="3811" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3903" e_stop="3989" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4088" e_stop="4296" e_length="209"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4405" e_stop="5106" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1036" stop="1352"/>
              <exon start="1487" stop="1554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1211" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="5106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3793" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTACCGTTTACCATATTTTTTTTTTCAATAGCAGACTGACATAAGAGAAGTACTCATAGACCAGACCCAATTATTGTCCGTCCGATTAAATAAGGCGGTCTATAATGGATCCTTGCTGGCGACCCATAAACTGTCACGTTGGGTTGATTGGGCCTTTCTCTCGTGGTGGCTGCCCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTTTTTTGGTAATTGTTTGCTGTGACTGGATAATTTTTCATCCTTTATGAAGTGAATAAGTTCTAGCCC</gDNA_template>
            <first_frame> C  Y  R  L  P  Y  F  F  F  Q  *  Q  T  D  I  R  E  V  L  I  D  Q  T  Q  L  L  S  V  R  L  N  K  A  V  Y  N  G  S  L  L  A  T  H  K  L  S  R  W  V  D  W  A  F  L  S  W  W  L  P  Q  Y  L  F  I  W  L  P  S  L  R  Q  F  L  S  L  S  L  L  F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V  F  W  *  L  F  A  V  T  G  *  F  F  I  L  Y  E  V  N  K  F  *  P </first_frame>
            <second_frame>  A  T  V  Y  H  I  F  F  F  N  S  R  L  T  *  E  K  Y  S  *  T  R  P  N  Y  C  P  S  D  *  I  R  R  S  I  M  D  P  C  W  R  P  I  N  C  H  V  G  L  I  G  P  F  S  R  G  G  C  P  N  I  Y  L  F  G  S  L  R  Y  A  N  F  S  L  S  L  C  C  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L  F  F  G  N  C  L  L  *  L  D  N  F  S  S  F  M  K  *  I  S  S  S   </second_frame>
            <third_frame>   L  P  F  T  I  F  F  F  S  I  A  D  *  H  K  R  S  T  H  R  P  D  P  I  I  V  R  P  I  K  *  G  G  L  *  W  I  L  A  G  D  P  *  T  V  T  L  G  *  L  G  L  S  L  V  V  A  A  P  I  F  I  Y  L  A  P  F  A  T  P  I  S  L  S  L  S  V  V  F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  F  L  V  I  V  C  C  D  W  I  I  F  H  P  L  *  S  E  *  V  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1127" stop="1352"/>
                    <exon start="1487" stop="1554"/>
                    <exon start="3701" stop="3811"/>
                    <exon start="3903" stop="3989"/>
                    <exon start="4088" stop="4296"/>
                    <exon start="4405" stop="4711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRRSIMDPCWRPINCHVGLIGPFSRGGCPNIYLFGSLRYANFSLSLCCFYETSIPLPEKMSKGPGLFSDIGKKARDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5955" PGL_stop="6326"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5955" e_stop="6326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5955" e_stop="6326" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5955" stop="6326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATCTCACCTATAAATTAGACTTGTGGAATTGTAATTTAAGTTGAACACTTCAAACTAACCAAAGAGAAGATATGCTGATTCTTATTTCAATTTGACTTGTGGAAGTGTGTGCTAGAAGTGACCAAATCAAGATGCTGATCATGCAATTTCAGGCAACCAGAAAGGAAAGGAGTACTATCCTTGCAAGTTCCAATTACAGAAAGCAATATATAAAGAGAAGATTTAAAAGACTGGTCTCTCTCGAGCTCTAAAATAATTACTTAATAGTTAACCAATAGGAGGAAGCAAGTGGCATTAACCTGCACCTATATGTTTAAAATTTTGTATTCACCTTTTATCAATCAATCACTACTACTATGAGTTGTAT</gDNA_template>
            <first_frame> F  L  S  H  L  *  I  R  L  V  E  L  *  F  K  L  N  T  S  N  *  P  K  R  R  Y  A  D  S  Y  F  N  L  T  C  G  S  V  C  *  K  *  P  N  Q  D  A  D  H  A  I  S  G  N  Q  K  G  K  E  Y  Y  P  C  K  F  Q  L  Q  K  A  I  Y  K  E  K  I  *  K  T  G  L  S  R  A  L  K  *  L  L  N  S  *  P  I  G  G  S  K  W  H  *  P  A  P  I  C  L  K  F  C  I  H  L  L  S  I  N  H  Y  Y  Y  E  L  Y </first_frame>
            <second_frame>  F  Y  L  T  Y  K  L  D  L  W  N  C  N  L  S  *  T  L  Q  T  N  Q  R  E  D  M  L  I  L  I  S  I  *  L  V  E  V  C  A  R  S  D  Q  I  K  M  L  I  M  Q  F  Q  A  T  R  K  E  R  S  T  I  L  A  S  S  N  Y  R  K  Q  Y  I  K  R  R  F  K  R  L  V  S  L  E  L  *  N  N  Y  L  I  V  N  Q  *  E  E  A  S  G  I  N  L  H  L  Y  V  *  N  F  V  F  T  F  Y  Q  S  I  T  T  T  M  S  C   </second_frame>
            <third_frame>   F  I  S  P  I  N  *  T  C  G  I  V  I  *  V  E  H  F  K  L  T  K  E  K  I  C  *  F  L  F  Q  F  D  L  W  K  C  V  L  E  V  T  K  S  R  C  *  S  C  N  F  R  Q  P  E  R  K  G  V  L  S  L  Q  V  P  I  T  E  S  N  I  *  R  E  D  L  K  D  W  S  L  S  S  S  K  I  I  T  *  *  L  T  N  R  R  K  Q  V  A  L  T  C  T  Y  M  F  K  I  L  Y  S  P  F  I  N  Q  S  L  L  L  *  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0132D01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="7358" PGL_stop="6720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7358" e_stop="6720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="7358" e_stop="6720" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7358" stop="6720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</gDNA_template>
            <first_frame> Q  S  S  L  P  A  T  F  A  E  R  E  R  W  E  R  N  R  R  R  *  S  T  I  Q  E  Y  P  P  P  A  A  R  A  G  R  H  I  S  R  R  L  P  A  F  A  G  C  *  *  A  P  L  C  P  Q  S  C  E  P  S  T  A  L  G  P  C  Q  *  G  K  T  T  R  F  R  W  F  V  E  P  T  R  V  V  K  E  K  L  S  K  S  T  V  R  S  G  *  S  T  L  S  A  L  P  E  R  R  L  M  D  P  L  L  T  L  V  F  T  H  P  R  L  L  S  P  S  S  G  S  T  R  T  V  G  L  F  L  T  V  R  L  R  V  V  L  L  P  I  R  I  R  V  L  S  S  P  P  R  K  S  C  R  Q  L  I  S  S  S  S  I  Y  F  V  S  V  L  L  Y  L  I  A  F  A  T  L  K  L  V  G  I  A  K  E  Y  F  S  E  T  L  N  F  V  S  V  F  *  *  Y  A  I  L  G </first_frame>
            <second_frame>  S  H  L  Y  R  P  H  L  Q  R  G  S  V  G  R  E  I  V  E  D  E  V  Q  S  K  S  I  L  L  P  P  Q  E  Q  E  G  T  F  H  G  A  F  Q  P  S  P  G  V  D  E  R  P  F  V  L  R  V  A  S  Q  V  Q  R  *  V  H  A  S  K  E  R  R  R  G  S  G  G  S  W  N  L  Q  G  S  *  R  K  S  C  P  S  L  P  *  E  V  G  D  P  H  *  A  H  Y  Q  R  E  G  *  W  I  H  C  *  R  W  Y  S  P  I  Q  G  C  Y  L  Q  A  Q  A  R  Q  G  P  *  V  S  S  *  P  *  G  *  G  S  C  C  C  R  *  G  *  G  Y  *  V  H  H  R  G  N  H  A  G  N  *  L  V  L  L  L  S  I  L  F  L  F  C  Y  I  L  L  L  L  L  L  *  S  L  L  E  *  L  K  S  I  F  L  R  L  *  I  L  F  Q  Y  F  N  S  M  Q  F  W   </second_frame>
            <third_frame>   V  I  S  T  G  H  I  C  R  E  G  A  L  G  E  K  S  S  K  M  K  Y  N  P  R  V  S  S  S  R  R  K  S  R  K  A  H  F  T  A  P  S  S  L  R  R  V  L  M  S  A  P  L  S  S  E  L  R  A  K  Y  S  V  R  S  M  P  V  R  K  D  D  E  V  Q  V  V  R  G  T  Y  K  G  R  E  G  K  V  V  Q  V  Y  R  K  K  W  V  I  H  I  E  R  I  T  R  E  K  V  N  G  S  T  V  N  V  G  I  H  P  S  K  V  V  I  S  K  L  R  L  D  K  D  R  R  S  L  L  D  R  K  A  K  G  R  A  A  A  D  K  D  K  G  T  K  F  T  T  E  E  I  M  Q  A  I  D  *  F  F  F  Y  L  F  C  F  C  F  V  I  S  Y  C  F  C  Y  F  E  A  C  W  N  S  *  R  V  F  F  *  D  S  E  F  C  F  S  I  L  I  V  C  N  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7356" stop="6859"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISTGHICREGALGEKSSKMKYNPRVSSSRRKSRKAHFTAPSSLRRVLMSAPLSSELRAKYSVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVISKLRLDKDRRSLLDRKAKGRAAADKDKGTKFTTEEIMQAID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12026" PGL_stop="14916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12026" e_stop="12348"/>
            <exon e_start="12505" e_stop="12574"/>
            <exon e_start="13395" e_stop="13655"/>
            <exon e_start="13832" e_stop="13916"/>
            <exon e_start="14082" e_stop="14916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.925" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="12026" e_stop="12348" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="12349" i_stop="12504" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="12505" e_stop="12574" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="12575" i_stop="13394" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="13395" e_stop="13655" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13656" i_stop="13831" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13832" e_stop="13916" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="14082" e_stop="14916" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12026" stop="12348"/>
              <exon start="12505" stop="12574"/>
              <exon start="13395" stop="13655"/>
              <exon start="13832" stop="13916"/>
              <exon start="14082" stop="14916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG : GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG : GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA : ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTC</gDNA_template>
            <first_frame> L  P  Y  L  Q  I  I  N  A  P  Q  L  H  Y  Y  Q  R  R  N  N  S  L  F  P  W  F  L  H  *  *  L  S  L  L  K  S  *  T  *  R  F  Q  R  K  Q  *  Q  Y  W  A  V  R  *  K  L  K  G  L  A  M  E  T  I  R  N  W  A  D  L  G  I  V  D  T  I  Y  E  D  D  A  E  D  S  S  T  T  S  L  S  I  S  P  R  I  S  P  S  P  S  P  P  R  S  K  I  V  S  W :   S  Q  V  T  G  N  E  T  D  V  V  I  H  V  E  S  S  R  F  R  L  H  K  :  D  P  L  A  A  R  S  G  F  L  K  R  K  L  K  G  L  S  E  L  T  L  S  P  P  L  K  I  T  A  E  T  F  S  L  I  A  E  F  C  Y  D  S  H  I  V  V  T  P  F  N  V  A  A  L  N  T  A  A  E  L  L  E  M  T  E  A  N  N  I  A  G  G  E  N  L  A  Q  K  T  E  A  Y  F  R  G  V  :  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F   </first_frame>
            <second_frame>  Y  L  T  C  K  *  L  M  P  L  N  Y  I  I  T  S  G  G  I  I  L  Y  F  L  G  F  S  T  S  N  S  A  S  *  N  H  K  R  N  V  F  S  G  S  S  S  N  T  G  L  *  G  E  N  *  R  G  W  P  W  K  P  S  E  I  G  Q  I  *  G  L  W  I  R  F  M  K  T  M  P  K  I  P  L  L  L  L  F  R  S  L  Q  E  S  P  H  L  L  H  L  L  A  L  R  S  S  P   : G  R  K  S  L  E  M  R  L  M  *  S  Y  M  L  R  A  H  V  F  A  Y  T  R :   I  R  W  Q  Q  G  V  D  F  *  K  E  S  *  R  V  C  L  N  *  P  S  L  R  R  *  R  *  R  P  K  H  S  L  *  S  Q  S  F  V  M  T  R  T  S  S  L  R  R  L  T  S  L  H  *  I  R  R  R  N  C  *  R  *  R  R  L  I  T  L  L  V  A  K  T  W  L  R  K  R  K  H  I  S  A  V  * :   F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S  </second_frame>
            <third_frame>   T  L  P  A  N  N  *  C  P  S  T  T  L  L  P  A  E  E  *  F  S  I  S  L  V  S  P  L  V  T  Q  P  P  K  I  I  N  V  T  F  S  A  E  A  V  A  I  L  G  C  K  V  K  I  E  G  V  G  H  G  N  H  Q  K  L  G  R  F  R  D  C  G  Y  D  L  *  R  R  C  R  R  F  L  Y  Y  F  S  F  D  L  S  K  N  L  P  I  S  F  T  S  S  L  *  D  R  L  L  :  V  A  S  H  W  K  *  D  *  C  S  H  T  C  *  E  L  T  F  S  L  T  Q   : G  S  V  G  S  K  E  W  I  S  E  K  K  A  E  G  S  V  *  I  N  P  L  S  A  V  K  D  N  G  R  N  I  L  F  D  R  R  V  L  L  *  L  A  H  R  R  Y  A  V  *  R  R  C  T  K  Y  G  G  G  I  A  R  D  D  G  G  *  *  H  C  W  W  R  K  L  G  S  E  N  G  S  I  F  P  R  C   : N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13833" stop="13916"/>
                    <exon start="14082" stop="14840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22078" PGL_stop="24712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22078" e_stop="22521"/>
            <exon e_start="23133" e_stop="23273"/>
            <exon e_start="24565" e_stop="24712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22078" e_stop="22521" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.691">
            <gDNA_intron_boundary i_start="22522" i_stop="23132" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23133" e_stop="23273" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23274" i_stop="24564" i_length="1291"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24565" e_stop="24712" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22078" stop="22521"/>
              <exon start="23133" stop="23273"/>
              <exon start="24565" stop="24712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCTCTCTCGTGAATGTTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTG : GTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAG : GGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGAAGATCGGACAGAAAATATAAGGCGGAT</gDNA_template>
            <first_frame> V  S  S  L  V  N  V  V  I  T  I  S  H  Q  S  S  A  S  F  L  I  S  F  V  L  P  S  F  G  V  V  H  F  F  P  S  I  Y  N  Q  S  I  R  I  Q  D  C  S  S  S  D  A  *  *  *  L  S  S  E  T  M  P  *  F  V  V  L  S  W  H  L  A  V  R  R  *  S  *  G  F  *  S  Y  R  R  V  I  A  K  L  N  H  W  A  S  T  L  P  V  P  R  *  K  P  P  S  *  R  R  *  G  K  R  R  L  L  E  S  F  I  S  T  E  N  P  Q  V  L  I  S  Q  D  T  I  Q  T  M  K  S  V  Q  T  I  F  L  A  F  L  :  V  K  V  Y  P  *  L  L  Q  T  G  I  Q  Q  T  L  F  G  T  N  A  L  *  R  K  V  T  D  R  S  C  F  S  K  G  A  V  L  Y  G  *  L  V  S  V  V  Q  :  G  R  A  L  W  H  V  L  *  V  A  V  Y  M  L  E  E  N  S  V  T  S  L  M  V  I  M  F  A  M  V  *  I  V  T  S  V  L  Q  L  K  I  G  Q  K  I  *  G  G  </first_frame>
            <second_frame>  F  P  L  S  *  M  L  *  S  Q  Y  P  T  K  A  Q  P  R  S  *  F  H  S  S  S  L  A  S  E  *  Y  I  F  S  L  Q  Y  T  I  N  R  S  G  F  K  I  V  P  V  Q  M  L  D  D  D  C  R  R  K  Q  C  L  D  L  S  S  S  V  G  I  L  L  C  V  D  E  V  R  D  F  E  A  T  G  V  *  L  Q  S  *  I  T  G  L  Q  H  Y  R  Y  R  G  E  N  H  L  L  S  A  G  K  E  N  G  D  F  *  N  R  S  Y  Q  R  K  I  R  K  F  S  S  A  R  I  Q  F  K  R  *  N  Q  C  K  R  F  F  W  L  S  W :   *  K  Y  I  P  D  F  Y  K  R  E  F  N  K  H  C  L  A  Q  M  L  C  R  E  K  *  Q  T  G  V  A  S  A  K  G  L  C  Y  M  D  N  W  S  Q  W  F  R :   E  E  H  C  G  M  C  S  R  S  L  F  T  C  *  R  K  T  Q  L  H  P  *  W  *  *  C  S  P  W  S  K  S  *  P  Q  F  C  S  *  R  S  D  R  K  Y  K  A  D </second_frame>
            <third_frame>   F  L  S  R  E  C  C  D  H  N  I  P  P  K  L  S  L  V  P  N  F  I  R  P  P  *  L  R  S  S  T  F  F  P  F  N  I  Q  S  I  D  Q  D  S  R  L  F  Q  F  R  C  L  M  M  T  V  V  G  N  N  A  L  I  C  R  P  Q  L  A  S  C  C  A  S  M  K  L  G  I  L  K  L  Q  A  C  N  C  K  A  K  S  L  G  F  N  I  T  G  T  E  V  K  T  T  F  L  A  P  V  R  K  T  E  T  S  R  I  V  H  I  N  G  K  S  A  S  S  H  Q  P  G  Y  N  S  N  D  E  I  S  A  N  D  F  S  G  F  P   : G  K  S  I  S  L  T  S  T  N  G  N  S  T  N  I  V  W  H  K  C  S  V  E  K  S  D  R  Q  E  L  L  Q  Q  R  G  C  V  I  W  I  T  G  L  S  G  S   : G  K  S  T  V  A  C  A  L  G  R  C  L  H  A  R  G  K  L  S  Y  I  L  D  G  D  N  V  R  H  G  L  N  R  D  L  S  F  A  A  E  D  R  T  E  N  I  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22158" stop="22521"/>
                    <exon start="23133" stop="23273"/>
                    <exon start="24565" stop="24710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRSSTFFPFNIQSIDQDSRLFQFRCLMMTVVGNNALICRPQLASCCASMKLGILKLQACNCKAKSLGFNITGTEVKTTFLAPVRKTETSRIVHINGKSASSHQPGYNSNDEISANDFSGFPGKSISLTSTNGNSTNIVWHKCSVEKSDRQELLQQRGCVIWITGLSGSGKSTVACALGRCLHARGKLSYILDGDNVRHGLNRDLSFAAEDRTENIRR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="29596" PGL_stop="27227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29596" e_stop="29262"/>
            <exon e_start="28965" e_stop="28815"/>
            <exon e_start="27881" e_stop="27811"/>
            <exon e_start="27689" e_stop="27227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="29596" e_stop="29262" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="29261" i_stop="28966" i_length="296"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28965" e_stop="28815" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="28814" i_stop="27882" i_length="933"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27881" e_stop="27811" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.849">
            <gDNA_intron_boundary i_start="27810" i_stop="27690" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27689" e_stop="27227" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29596" stop="29262"/>
              <exon start="28965" stop="28815"/>
              <exon start="27881" stop="27811"/>
              <exon start="27689" stop="27227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29371" stop="29262"/>
              <exon start="28965" stop="28815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAG : GGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAG : ATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAG : TTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTCAAAATTTTGGTT</gDNA_template>
            <first_frame> G  L  R  P  S  T  T  S  S  *  L  K  L  F  G  P  T  L  S  P  P  E  T  P  E  E  L  L  R  N  Q  R  R  W  V  V  T  G  V  E  A  R  V  A  V  A  A  A  V  K  R  M  E  M  L  I  G  E  P  P  *  I  L  L  L  L  Q  L  H  L  A  K  L  P  P  K  F  I  H  Q  L  L  L  L  T  E  N  L  L  P  I  H  S  K  K  M  K  *  I  L  S  N  P  R  S  S  N  I  I  K  *  R :   A  *  R  L  W  K  T  F  *  T  R  L  *  T  *  *  D  A  L  M  M  L  H  R  K  K  H  P  Q  *  M  E  V  E  S  G  C  L  G  V  L  H  L  G  F  C  L  I  T  Q  :  M  N  S  K  N  P  E  R  N  Q  E  F  V  L  G  R  N  L  R  R  T  Q  K  S :   S  K  T  K  S  S  P  L  L  L  M  G  W  I  F  *  L  H  L  K  M  L  A  R  N  H  W  P  D  *  K  Q  E  K  Q  Q  L  K  Q  L  L  K  E  R  K  K  E  L  Q  H  *  K  K  L  G  G  R  D  G  S  L  L  W  P  E  I  C  S  Q  D  F  N  D  V  N  T  C  R  W  T  M  L  P  L  F  S  T  Q  S  F  I  S  F  T  L  Y  S  F  Y  G  S  F  Q  P  V  F  Y  V  R  P  P  E  L  L  S  L  S  V  P  E  K  D  I  D  T  V  T  V  L  P  K  E  R  K  K  N  F  L  L  I  K  F  L  *  H  F  Y  I  K  F  K  I  L  V </first_frame>
            <second_frame>  A  *  D  P  V  L  L  R  R  N  S  N  C  L  G  Q  H  C  R  R  R  K  P  L  K  N  Y  S  E  I  S  D  D  G  W  *  P  V  *  K  H  E  *  Q  *  Q  Q  Q  *  R  G  W  R  C  *  L  E  S  R  H  R  F  C  C  C  Y  N  Y  I  W  Q  N  Y  R  Q  N  S  F  I  N  Y  C  Y  *  R  R  I  Y  C  P  S  I  P  R  R  *  N  R  Y  Y  P  T  P  E  A  Q  T  L  S  N  K   : G  P  E  D  F  G  R  H  F  R  Q  D  F  R  H  S  E  T  R  *  *  C  F  T  G  R  N  T  L  N  E  W  R  W  S  P  V  V  *  A  C  S  T  W  D  S  V  *  S  H  R :   *  T  P  K  T  Q  K  E  T  K  N  S  S  W  E  G  I  *  G  E  L  K  R   : V  Q  K  P  N  Q  V  H  C  C  *  W  D  G  Y  F  S  C  I  *  K  C  L  P  E  I  I  G  Q  T  R  S  K  R  S  S  S  *  S  S  C  *  K  R  G  R  K  S  C  S  I  K  K  N  *  G  G  E  M  A  P  C  C  G  Q  R  Y  A  V  K  T  S  T  T  L  T  P  V  D  G  L  C  F  H  Y  S  A  L  N  L  S  F  L  L  L  F  I  V  S  M  A  H  F  S  L  Y  F  M  L  G  H  L  S  C  C  P  C  Q  F  Q  K  K  T  S  T  L  L  L  Y  C  Q  K  K  G  R  R  I  S  F  *  L  N  S  F  D  I  S  I  L  S  S  K  F  W   </second_frame>
            <third_frame>   L  E  T  Q  Y  Y  F  V  V  T  Q  T  V  W  A  N  I  V  A  A  G  N  P  *  R  I  T  Q  K  S  A  T  M  G  G  D  R  C  R  S  T  S  S  S  S  S  S  S  E  E  D  G  D  A  D  W  R  A  A  I  D  S  V  A  A  T  T  T  F  G  K  T  T  A  K  I  H  S  S  T  T  A  T  N  G  E  S  I  A  H  P  F  Q  E  D  E  I  D  T  I  Q  P  Q  K  L  K  H  Y  Q  I  K  :  G  L  K  T  L  E  D  I  L  D  K  T  L  D  I  V  R  R  V  D  D  A  S  Q  E  E  T  P  S  M  N  G  G  G  V  R  L  F  R  R  A  P  P  G  I  L  F  D  H  T   : D  E  L  Q  K  P  R  K  K  P  R  I  R  P  G  K  E  F  E  E  N  S  K  E  :  F  K  N  Q  I  K  S  I  A  V  D  G  M  D  I  L  A  A  S  K  N  A  C  Q  K  S  L  A  R  L  E  A  R  E  A  A  A  K  A  A  A  K  R  E  E  E  R  V  A  A  L  K  K  I  R  G  E  R  W  L  P  A  V  A  R  D  M  Q  S  R  L  Q  R  R  *  H  L  *  M  D  Y  A  S  I  I  Q  H  S  I  F  H  F  F  Y  S  L  *  F  L  W  L  I  S  A  C  I  L  C  *  A  T  *  A  A  V  L  V  S  S  R  K  R  H  R  H  C  Y  C  I  A  K  R  K  E  E  E  F  P  S  D  *  I  P  L  T  F  L  Y  *  V  Q  N  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29522" stop="29262"/>
                    <exon start="28965" stop="28815"/>
                    <exon start="27881" stop="27811"/>
                    <exon start="27689" stop="27465"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITQKSATMGGDRCRSTSSSSSSSEEDGDADWRAAIDSVAATTTFGKTTAKIHSSTTATNGESIAHPFQEDEIDTIQPQKLKHYQIKGLKTLEDILDKTLDIVRRVDDASQEETPSMNGGGVRLFRRAPPGILFDHTDELQKPRKKPRIRPGKEFEENSKEFKNQIKSIAVDGMDILAASKNACQKSLARLEAREAAAKAAAKREEERVAALKKIRGERWLPAVARDMQSRLQRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30935" PGL_stop="32733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30935" e_stop="31202"/>
            <exon e_start="31299" e_stop="31361"/>
            <exon e_start="31452" e_stop="31555"/>
            <exon e_start="31914" e_stop="32005"/>
            <exon e_start="32109" e_stop="32198"/>
            <exon e_start="32291" e_stop="32366"/>
            <exon e_start="32446" e_stop="32733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.585" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30935" e_stop="31202" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31299" e_stop="31361" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.534" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31452" e_stop="31555" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.892" acc_prob="0.976">
            <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31914" e_stop="32005" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.947" acc_prob="0.898">
            <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32109" e_stop="32198" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="32199" i_stop="32290" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32291" e_stop="32366" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.585">
            <gDNA_intron_boundary i_start="32367" i_stop="32445" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="32446" e_stop="32733" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30935" stop="31202"/>
              <exon start="31299" stop="31361"/>
              <exon start="31452" stop="31555"/>
              <exon start="31914" stop="32005"/>
              <exon start="32109" stop="32198"/>
              <exon start="32291" stop="32366"/>
              <exon start="32446" stop="32733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC : TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT : GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG : GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG : GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA : AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG : AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTG</gDNA_template>
            <first_frame> I  *  Y  C  K  T  V  S  P  Q  E  A  I  S  R  T  Q  S  T  R  F  L  V  S  W  K  I  K  V  F  C  *  N  P  N  S  E  R  L  *  S  F  T  R  K  A  S  W  G  R  N  N  T  V  K  I  E  C  L  *  P  R  Q  N  G  Q  L  N  G  V  A  L  N  R  K  N  L  K  P  L  L  N  G  F  P  S  I  A  A   : L  L  H  L  H  R  S  R  T  Q  Y  A  Q  K  M  A  M  F  L  K  *   : C  I  *  F  H  T  S  G  N  M  G  G  I  Q  *  L  G  H  L  *  S  K  K  T  *  F  L  L  L  S  T  R  T  L  K  :  E  S  I  I  V  R  S  *  T  R  F  L  Q  S  S  H  I  *  L  L  *  E  L  R  E  M  F  S  V  M  R :   Q  L  K  N  *  I  S  K  Q  R  T  G  R  S  F  S  L  M  K  H  S  L  E  K  T  L  *  Q  F  K :   I  L  M  H  W  T  P  R  C  F  *  I  L  I  M  L  R  K  I  *  R  L  T  M  K  :  K  Y  R  K  C  I  L  T  Q  H  T  T  *  I  L  L  G  T  S  S  K  C  S  R  N  L  E  V  R  K  R  K  R  L  H  C  M  V  E  V  G  T  R  H  R  M  K  E  L  L  L  L  R  L  F  *  L  Q  D  H  V  S  K  M  T  R  K  Q  K  K  M  V  K  E  Q  R  S  R  L  S  A  L  W  M  L  H  L  R  Q  F  M  E  E  V  L  L </first_frame>
            <second_frame>  S  D  T  V  K  R  Y  R  H  K  K  Q  F  Q  E  H  S  Q  Q  D  F  L  F  L  G  K  *  K  C  S  A  K  T  L  I  Q  R  D  Y  S  L  L  Q  E  R  H  H  G  E  E  T  T  Q  *  R  S  N  V  Y  N  Q  D  R  M  G  N  *  M  G  W  R  *  I  E  R  T  *  N  P  F  *  T  A  S  L  L  L  L  R  :  S  Y  I  Y  T  V  R  G  P  S  M  H  K  R  W  Q  C  F  *  N  N  :  A  Y  S  S  I  H  Q  E  I  W  E  E  S  S  N  W  G  T  Y  E  A  R  R  L  N  S  S  Y  F  P  Q  E  L  *  R :   R  V  S  L  S  G  L  E  Q  G  F  Y  R  V  H  T  Y  S  C  C  K  N  Y  G  K  C  F  L  L  *   : G  S  *  R  T  E  Y  Q  N  K  E  L  E  G  A  S  H  *  *  S  I  L  *  R  R  P  Y  N  N  S   : K  S  *  C  T  G  H  Q  G  A  S  R  F  *  S  C  *  E  K  F  K  G  *  R  *  R :   N  T  E  N  A  F  *  P  N  I  Q  H  K  Y  Y  W  G  H  Q  A  N  A  Q  G  T  W  K  *  E  S  E  R  D  C  T  A  W  W  R  W  E  Q  G  T  E  *  K  S  C  C  S  *  G  Y  F  S  C  K  I  T  Y  Q  R  *  R  E  N  K  R  K  W  *  R  N  S  A  A  D  F  Q  H  C  G  C  C  I  C  V  S  S  W  K  K  C  C   </second_frame>
            <third_frame>   L  I  L  *  N  G  I  A  T  R  S  N  F  K  N  T  V  N  K  I  S  C  F  L  E  N  K  S  V  L  L  K  P  *  F  R  E  I  I  V  F  Y  K  K  G  I  M  G  K  K  Q  H  S  K  D  R  M  F  I  T  K  T  E  W  A  T  E  W  G  G  A  K  S  K  E  L  K  T  P  F  K  R  L  P  F  Y  C  C  A :   L  T  F  T  P  F  E  D  P  V  C  T  K  D  G  N  V  F  E  I  M :   H  I  V  P  Y  I  R  K  Y  G  R  N  P  V  T  G  A  P  M  K  Q  E  D  L  I  P  L  T  F  H  K  N  S  E   : G  E  Y  H  C  P  V  L  N  K  V  F  T  E  F  T  H  I  V  A  V  R  T  T  G  N  V  F  C  Y  E  :  A  V  K  E  L  N  I  K  T  K  N  W  K  E  L  L  T  D  E  A  F  S  R  E  D  L  I  T  I  Q  :  N  P  N  A  L  D  T  K  V  L  L  D  F  D  H  V  K  K  N  L  K  V  D  D  E   : E  I  Q  K  M  H  S  D  P  T  Y  N  I  N  I  T  G  D  I  K  Q  M  L  K  E  L  G  S  E  K  A  K  E  I  A  L  H  G  G  G  G  N  K  A  Q  N  E  R  A  A  A  L  E  A  I  L  A  A  R  S  R  I  K  D  D  A  K  T  K  E  N  G  E  G  T  A  Q  Q  T  F  S  I  V  D  A  A  S  A  S  V  H  G  R  S  A  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31039" stop="31202"/>
                    <exon start="31299" stop="31361"/>
                    <exon start="31452" stop="31555"/>
                    <exon start="31914" stop="32005"/>
                    <exon start="32109" stop="32198"/>
                    <exon start="32291" stop="32366"/>
                    <exon start="32446" stop="32732"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FREIIVFYKKGIMGKKQHSKDRMFITKTEWATEWGGAKSKELKTPFKRLPFYCCALTFTPFEDPVCTKDGNVFEIMHIVPYIRKYGRNPVTGAPMKQEDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVRTTGNVFCYEAVKELNIKTKNWKELLTDEAFSREDLITIQNPNALDTKVLLDFDHVKKNLKVDDEEIQKMHSDPTYNINITGDIKQMLKELGSEKAKEIALHGGGGNKAQNERAAALEAILAARSRIKDDAKTKENGEGTAQQTFSIVDAASASVHGRSAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="34082" PGL_stop="35984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34082" e_stop="34205"/>
            <exon e_start="34337" e_stop="34625"/>
            <exon e_start="35659" e_stop="35766"/>
            <exon e_start="35872" e_stop="35984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.968"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="34082" e_stop="34205" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34206" i_stop="34336" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34337" e_stop="34625" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34626" i_stop="35658" i_length="1033"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35659" e_stop="35766" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35767" i_stop="35871" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="35872" e_stop="35984" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34082" stop="34205"/>
              <exon start="34337" stop="34625"/>
              <exon start="35659" stop="35766"/>
              <exon start="35872" stop="35984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACAACACATGGTGATTTGAACATTGAGCTTCATTGTGACATAACTCCAAGGGCATGTGAGAACTTCATTACTCTTTGTGAACAAGGTTATTATAATGGAGTAGCTTTTCACAGAAACATCCG : GAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTG : GAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAAT : GAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAA</gDNA_template>
            <first_frame> I  Q  H  M  V  I  *  T  L  S  F  I  V  T  *  L  Q  G  H  V  R  T  S  L  L  F  V  N  K  V  I  I  M  E  *  L  F  T  E  T  S   : G  I  S  *  F  K  V  V  I  Q  L  G  Q  G  K  E  V  S  R  S  G  V  S  P  S  R  M  K  C  T  P  S  C  C  I  L  V  E  V  L  L  A  W  L  I  L  V  L  T  Q  M  A  H  S  S  S  S  C  T  S  L  P  L  T  *  I  S  N  I  P  S  L  V  W  L  L  E  A  C  Q  H  F  P  P  W  R  K  S  L  L  M  T  M  T  D  L  W :   K  K  S  R  *  *  V  *  K  F  M  *  T  P  M  Q  S  L  M  K  K  R  R  K  Q  T  M  T  T  K  L  K  M  Q  T  M :   R  R  L  D  H  G  T  A  I  L  E  L  E  P  Q  R  F  K  L  L  A  V  E  L  G  S  I  *  K  Q  G  L  H  R  L  I  P  </first_frame>
            <second_frame>  Y  N  T  W  *  F  E  H  *  A  S  L  *  H  N  S  K  G  M  *  E  L  H  Y  S  L  *  T  R  L  L  *  W  S  S  F  S  Q  K  H  P  :  E  F  H  D  S  R  W  *  S  N  W  D  R  E  R  R  *  V  D  L  G  *  A  L  Q  G  *  S  A  L  Q  V  A  A  F  W  *  R  C  C  *  H  G  *  F  W  S  S  L  K  W  L  T  V  L  H  P  V  Q  V  C  H  S  L  K  F  Q  T  Y  R  L  W  Y  G  C  W  R  L  A  N  T  F  H  H  G  E  S  P  C  *  *  R  *  P  T  S   : G  R  N  Q  D  N  K  C  R  S  L  C  K  P  L  C  R  A  *  *  R  R  G  E  N  K  R  *  Q  Q  N  *  R  C  R  Q   : *  E  G  W  I  M  V  Q  Q  S  W  N  W  N  L  R  D  S  S  C  W  Q  W  N  W  E  V  F  E  S  K  G  C  T  G  *  F  Q </second_frame>
            <third_frame>   T  T  H  G  D  L  N  I  E  L  H  C  D  I  T  P  R  A  C  E  N  F  I  T  L  C  E  Q  G  Y  Y  N  G  V  A  F  H  R  N  I  R :   N  F  M  I  Q  G  G  D  P  T  G  T  G  K  G  G  E  S  I  W  G  K  P  F  K  D  E  V  H  S  K  L  L  H  S  G  R  G  V  V  S  M  A  N  S  G  P  H  S  N  G  S  Q  F  F  I  L  Y  K  S  A  T  H  L  N  F  K  H  T  V  F  G  M  V  V  G  G  L  P  T  L  S  T  M  E  K  V  P  V  D  D  D  D  R  P  L  :  E  E  I  K  I  I  S  V  E  V  Y  V  N  P  Y  A  E  L  D  E  E  E  E  K  T  N  D  D  N  K  T  E  D  A  D  N  :  E  K  V  G  S  W  Y  S  N  P  G  T  G  T  S  E  I  Q  A  V  G  S  G  I  G  K  Y  L  K  A  R  A  A  Q  A  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34084" stop="34205"/>
                    <exon start="34337" stop="34625"/>
                    <exon start="35659" stop="35766"/>
                    <exon start="35872" stop="35982"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTHGDLNIELHCDITPRACENFITLCEQGYYNGVAFHRNIRNFMIQGGDPTGTGKGGESIWGKPFKDEVHSKLLHSGRGVVSMANSGPHSNGSQFFILYKSATHLNFKHTVFGMVVGGLPTLSTMEKVPVDDDDRPLEEIKIISVEVYVNPYAELDEEEEKTNDDNKTEDADNEKVGSWYSNPGTGTSEIQAVGSGIGKYLKARAAQADS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="41307" PGL_stop="41886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41307" e_stop="41886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41307" e_stop="41886" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41307" stop="41886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTGTCCAACAGCTCATGTGGATGTTGAATGAGCTGAGCTCCCCCTATGGAG</gDNA_template>
            <first_frame> D  A  L  N  Q  N  H  *  R  Y  Y  Y  *  S  C  T  F  I  V  *  C  G  K  R  D  T  *  P  F  *  C  *  M  D  T  L  F  R  L  V  S  L  Q  Q  Q  Q  Q  Q  Q  S  D  Q  Y  S  F  N  S  S  R  T  S  S  S  S  R  S  S  N  K  Q  N  S  T  Y  N  Y  H  P  H  H  N  H  Q  D  E  E  C  F  N  F  F  M  D  E  D  D  F  S  S  S  S  S  K  H  N  N  Y  P  P  P  H  Y  N  Q  Y  Q  Q  I  S  T  P  T  T  T  S  S  T  P  T  H  Q  S  Q  S  Q  Y  D  H  Q  F  S  P  A  R  D  L  N  L  E  F  A  S  S  F  S  G  K  W  A  T  D  I  L  L  E  T  S  R  A  I  A  D  K  N  S  T  R  V  Q  Q  L  M  W  M  L  N  E  L  S  S  P  Y  G  </first_frame>
            <second_frame>  M  L  *  T  K  I  T  K  G  T  T  T  S  L  V  H  L  L  F  D  V  A  R  E  I  R  N  P  F  S  V  K  W  I  L  C  L  G  *  L  A  F  N  N  N  N  N  N  N  L  I  N  T  L  L  T  P  A  E  L  Q  A  A  L  D  L  L  T  N  K  T  A  H  T  I  I  I  H  I  I  I  I  K  T  K  N  A  S  T  F  S  W  M  K  M  I  S  L  L  L  L  L  N  T  T  T  I  L  L  L  I  T  I  N  I  N  K  S  P  H  P  Q  L  Q  A  V  P  Q  H  I  N  L  N  L  N  M  I  I  N  S  P  Q  H  V  I  *  I  S  N  S  L  P  H  F  L  E  N  G  P  Q  T  F  F  *  K  L  L  V  P  *  P  I  R  T  V  H  V  S  N  S  S  C  G  C  *  M  S  *  A  P  P  M  E </second_frame>
            <third_frame>   C  F  E  P  K  S  L  K  V  L  L  L  V  L  Y  I  Y  C  L  M  W  Q  E  R  Y  V  T  L  L  V  L  N  G  Y  F  V  *  V  S  *  P  S  T  T  T  T  T  T  I  *  S  I  L  F  *  L  Q  Q  N  F  K  Q  L  *  I  F  *  Q  T  K  Q  H  I  Q  L  S  S  T  S  *  S  S  R  R  R  M  L  Q  L  F  H  G  *  R  *  F  L  F  F  F  F  *  T  Q  Q  L  S  S  S  S  L  Q  S  I  S  T  N  L  H  T  H  N  Y  K  Q  Y  P  N  T  S  I  S  I  S  I  *  S  S  I  L  P  S  T  *  F  K  S  R  I  R  F  L  I  F  W  K  M  G  H  R  H  S  S  R  N  F  S  C  H  S  R  *  E  Q  Y  T  C  P  T  A  H  V  D  V  E  *  A  E  L  P  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41403" stop="41885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDTLFRLVSLQQQQQQQSDQYSFNSSRTSSSSRSSNKQNSTYNYHPHHNHQDEECFNFFMDEDDFSSSSSKHNNYPPPHYNQYQQISTPTTTSSTPTHQSQSQYDHQFSPARDLNLEFASSFSGKWATDILLETSRAIADKNSTRVQQLMWMLNELSSPYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="50684" PGL_stop="45725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50684" e_stop="50325"/>
            <exon e_start="49355" e_stop="48746"/>
            <exon e_start="46646" e_stop="46374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="0.989"/>
          <exon-intron don_prob="0.977" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="50684" e_stop="50325" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="50324" i_stop="49356" i_length="969"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49355" e_stop="48746" e_length="610"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.980">
            <gDNA_intron_boundary i_start="48745" i_stop="46647" i_length="2099"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46646" e_stop="46374" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50684" stop="50325"/>
              <exon start="49355" stop="48746"/>
              <exon start="46646" stop="46374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAAGTGCTGTGGAGAGAGAAAGAGAAGGAGATCGGAGAAGTAAGCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGG : CATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTCGAAAAGGATGCACCGCATGGGGGTGCACACTTACGTATTAACCAGCACCAACACTTTCGTGAGCTTGAAGAGGTTGAGGAGGATAATATACAGATGCCACCACCAAGGAAGCGATCCGCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAG : GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCC</gDNA_template>
            <first_frame> K  E  V  L  W  R  E  K  E  K  E  I  G  E  V  S  L  D  R  W  N  L  G  G  Q  G  K  I  F  G  L  K  L  S  S  L  L  T  F  Q  D  P  I  N  S  L  F  Y  N  L  F  L  L  L  N  P  Y  L  P  L  Q  F  G  R  L  G  Q  D  I  A  E  I  N  F  S  T  A  S  *  A  A  D  L  E  G  N  F  I  C  A  E  L  D  D  *  L  N  *  L  S  N  F  D  *  N  I  C  R  E  I  S  F  N  L  Q  F  G  C  F  R  :  H  Y  I  K  I  K  R  E  Q  N  E  V  E  E  Q  I  Q  E  S  N  D  Y  T  L  L  S  R  T  Q  M  L  I  F  S  S  L  M  E  Y  S  R  L  P  C  F  T  *  S  I  L  L  Y  F  R  K  G  C  T  A  W  G  C  T  L  T  Y  *  P  A  P  T  L  S  *  A  *  R  G  *  G  G  *  Y  T  D  A  T  T  K  E  A  I  R  T  C  C  Q  T  E  A  *  A  T  N  H  L  D  *  R  I  S  *  R  G  F  A  A  K  A  C  L  F  S  W  S  K  N  C  N  R  S  L  *  E  F  W  K  *  Y  L  L  L  L  P  W  K  N  V  V  G  Y  *  G  K  P  H  T  S  S  W  G  R  Y  S  T  R  S  E  N  K  N  V  L  L  V  R  *  V  *  R  W  A  N  V  S  C  S  Q  K  R  S  S  T  S  K  S  W  I  S  Y  T  F  I   : G  *  C  Y  R  C  W  L  L  F  I  Q  R  F  V  D  L  E  K  *  R  N  C  F  G  S  R  R  T  *  *  D  T  *  F  V  Q  V  K  C  T  G  E  A  K  S  N  L  Q  *  E  D  R  *  I  C  N  V  D  A  Y  *  *  Y  K  L  H  K  S  F  D  W  R  S  H  K  R  P  P  H  W  S  I  *  L  S  V  Q  *  T  A  </first_frame>
            <second_frame>  R  K  C  C  G  E  R  K  R  R  R  S  E  K  *  A  *  I  G  G  I  *  G  A  K  G  R  S  L  V  S  S  Y  H  H  Y  *  H  S  K  I  Q  *  T  A  Y  S  I  T  F  F  Y  S  L  T  L  I  F  P  F  N  L  V  G  W  G  K  I  L  Q  K  L  T  F  Q  Q  L  V  K  Q  L  I  L  R  G  T  S  Y  A  Q  N  L  M  I  S  S  T  D  *  A  T  S  I  E  T  Y  V  E  R  F  R  S  I  F  S  L  V  V  F  G :   I  T  L  R  *  K  G  N  K  M  R  L  K  N  K  S  R  N  L  T  T  I  R  C  Y  P  G  R  R  C  S  F  S  V  L  L  W  S  I  V  G  C  L  V  L  L  N  L  Y  C  F  I  F  E  K  D  A  P  H  G  G  A  H  L  R  I  N  Q  H  Q  H  F  R  E  L  E  E  V  E  E  D  N  I  Q  M  P  P  P  R  K  R  S  A  R  A  V  K  R  K  P  K  R  P  T  T  L  I  E  E  F  L  D  E  A  S  Q  L  R  H  V  F  F  P  G  L  R  T  A  I  D  P  C  R  S  S  G  N  D  T  Y  Y  Y  Y  P  G  R  M  W  L  D  T  E  G  N  P  I  Q  A  H  G  G  G  I  L  H  D  Q  R  T  K  M  Y  Y  W  Y  G  E  Y  K  D  G  P  T  Y  H  A  H  K  K  G  A  A  R  V  S  P  G  F  H  T  L  L  *  :  V  D  V  I  G  V  G  C  Y  S  S  K  D  L  W  T  W  K  N  E  G  I  V  L  A  A  E  E  H  N  E  T  H  D  L  Y  K  L  N  V  L  E  R  P  K  V  I  Y  N  E  K  T  G  K  Y  V  M  W  M  H  I  D  D  T  N  Y  T  K  A  L  T  G  V  A  I  S  D  L  P  T  G  P  F  N  Y  L  Y  S  K  R  P </second_frame>
            <third_frame>   G  S  A  V  E  R  E  R  E  G  D  R  R  S  K  L  R  *  V  E  F  R  G  P  R  E  D  L  W  S  Q  V  I  I  I  I  N  I  P  R  S  N  K  Q  L  I  L  *  P  F  S  T  P  *  P  L  S  S  P  S  I  W  *  V  G  A  R  Y  C  R  N  *  L  F  N  S  *  L  S  S  *  S  *  G  E  L  H  M  R  R  T  *  *  L  A  Q  L  T  E  Q  L  R  L  K  H  M  S  R  D  F  V  Q  S  S  V  W  L  F  S   : A  L  H  *  D  K  K  G  T  K  *  G  *  R  T  N  P  G  I  *  R  L  Y  V  A  I  Q  D  A  D  A  H  F  Q  F  S  Y  G  V  *  S  V  A  L  F  Y  L  I  Y  I  A  L  F  S  K  R  M  H  R  M  G  V  H  T  Y  V  L  T  S  T  N  T  F  V  S  L  K  R  L  R  R  I  I  Y  R  C  H  H  Q  G  S  D  P  H  V  L  S  N  G  S  L  S  D  Q  P  P  *  L  K  N  F  L  T  R  L  R  S  *  G  M  S  F  F  L  V  *  E  L  Q  *  I  L  V  G  V  L  E  M  I  P  I  I  I  T  L  E  E  C  G  W  I  L  R  E  T  P  Y  K  L  M  G  E  V  F  Y  T  I  R  E  Q  K  C  I  I  G  T  V  S  I  K  M  G  Q  R  I  M  L  T  K  K  E  Q  H  E  *  V  L  D  F  I  H  F  Y  R :   L  M  L  S  V  L  V  A  I  H  P  K  I  C  G  L  G  K  M  K  E  L  F  W  Q  Q  K  N  I  M  R  H  M  I  C  T  S  *  M  Y  W  R  G  Q  K  *  F  T  M  R  R  Q  V  N  M  *  C  G  C  I  L  M  I  Q  T  T  Q  K  L  *  L  A  *  P  *  A  T  S  P  L  V  H  L  I  I  C  T  V  N  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49339" stop="48746"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNKMRLKNKSRNLTTIRCYPGRRCSFSVLLWSIVGCLVLLNLYCFIFEKDAPHGGAHLRINQHQHFRELEEVEEDNIQMPPPRKRSARAVKRKPKRPTTLIEEFLDEASQLRHVFFPGLRTAIDPCRSSGNDTYYYYPGRMWLDTEGNPIQAHGGGILHDQRTKMYYWYGEYKDGPTYHAHKKGAARVSPGFHTLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46646" stop="46374"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDVIGVGCYSSKDLWTWKNEGIVLAAEEHNETHDLYKLNVLERPKVIYNEKTGKYVMWMHIDDTNYTKALTGVAISDLPTGPFNYLYSKRP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50684" stop="50448"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEVLWREKEKEIGEVSLDRWNLGGQGKIFGLKLSSLLTFQDPINSLFYNLFLLLNPYLPLQFGRLGQDIAEINFSTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48962" e_stop="48776"/>
            <exon e_start="46646" e_stop="45725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="0.995"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="48962" e_stop="48776" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="48775" i_stop="46647" i_length="2129"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="46646" e_stop="45725" e_length="922"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48962" stop="48776"/>
              <exon start="46646" stop="45725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566455" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGA : GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCAT</gDNA_template>
            <first_frame> L  *  E  F  W  K  *  Y  L  L  L  L  P  W  K  N  V  V  G  Y  *  G  K  P  H  T  S  S  W  G  R  Y  S  T  R  S  E  N  K  N  V  L  L  V  R  *  V  *  R  W  A  N  V  S  C  S  Q  K  R  S  S  T   : S  *  C  Y  R  C  W  L  L  F  I  Q  R  F  V  D  L  E  K  *  R  N  C  F  G  S  R  R  T  *  *  D  T  *  F  V  Q  V  K  C  T  G  E  A  K  S  N  L  Q  *  E  D  R  *  I  C  N  V  D  A  Y  *  *  Y  K  L  H  K  S  F  D  W  R  S  H  K  R  P  P  H  W  S  I  *  L  S  V  Q  *  T  A  P  R  I  *  K  Q  G  Y  D  T  L  Q  R  *  *  W  C  C  I  P  R  L  L  L  R  G  Q  Q  *  A  S  Y  W  S  T  *  *  R  V  H  G  R  D  P  I  H  E  K  D  S  C  W  T  T  Q  G  S  P  C  F  V  Q  T  *  R  N  L  L  H  D  H  V  R  L  H  W  L  G  S  E  R  G  P  S  S  C  S  *  I  N  Y  G  A  M  G  D  H  W  K  S  V  H  R  W  E  Q  S  F  *  R  N  N  F  L  C  S  E  H  I  C  A  S  F  A  *  A  T  W  F  L  Y  F  Y  G  R  S  V  E  S  S  *  L  E  G  F  K  V  C  L  V  T  F  K  S  I  G  A  S  R  P  S  S  *  V  Q  F  W  L  P  L  M  V  Q  S  V  C  L  L  A  *  K  M  E  T  S  L  *  M  A  G  N  K  L  S  R  G  I  E  N  H  L  Y  K  Y  V  F  S  T  F  G  F  S  N  N  F  S   </first_frame>
            <second_frame>  C  R  S  S  G  N  D  T  Y  Y  Y  Y  P  G  R  M  W  L  D  T  E  G  N  P  I  Q  A  H  G  G  G  I  L  H  D  Q  R  T  K  M  Y  Y  W  Y  G  E  Y  K  D  G  P  T  Y  H  A  H  K  K  G  A  A  R  :  V  D  V  I  G  V  G  C  Y  S  S  K  D  L  W  T  W  K  N  E  G  I  V  L  A  A  E  E  H  N  E  T  H  D  L  Y  K  L  N  V  L  E  R  P  K  V  I  Y  N  E  K  T  G  K  Y  V  M  W  M  H  I  D  D  T  N  Y  T  K  A  L  T  G  V  A  I  S  D  L  P  T  G  P  F  N  Y  L  Y  S  K  R  P  H  G  Y  E  S  R  D  M  T  L  F  K  D  D  D  G  V  A  Y  L  V  Y  S  S  E  D  N  S  E  L  H  I  G  P  L  N  E  E  Y  M  D  V  T  Q  S  M  R  R  I  L  V  G  Q  H  R  E  A  P  A  L  F  K  H  E  G  T  Y  Y  M  I  T  S  G  C  T  G  W  A  P  N  E  A  L  A  H  A  A  E  S  I  M  G  P  W  E  T  I  G  N  P  C  I  G  G  N  K  V  F  R  E  T  T  F  F  A  Q  S  T  F  V  L  P  L  P  E  L  H  G  S  F  I  F  M  A  D  R  W  N  P  A  D  L  K  D  S  R  Y  V  W  L  P  L  R  V  S  G  P  V  D  H  P  L  E  Y  N  F  G  F  P  L  W  S  R  V  S  V  Y  W  H  K  R  W  R  L  P  Y  R  W  Q  E  I  N  *  V  E  E  S  K  I  I  C  T  N  M  F  F  Q  L  L  G  F  L  I  I  F  P  </second_frame>
            <third_frame>   V  G  V  L  E  M  I  P  I  I  I  T  L  E  E  C  G  W  I  L  R  E  T  P  Y  K  L  M  G  E  V  F  Y  T  I  R  E  Q  K  C  I  I  G  T  V  S  I  K  M  G  Q  R  I  M  L  T  K  K  E  Q  H  E :   L  M  L  S  V  L  V  A  I  H  P  K  I  C  G  L  G  K  M  K  E  L  F  W  Q  Q  K  N  I  M  R  H  M  I  C  T  S  *  M  Y  W  R  G  Q  K  *  F  T  M  R  R  Q  V  N  M  *  C  G  C  I  L  M  I  Q  T  T  Q  K  L  *  L  A  *  P  *  A  T  S  P  L  V  H  L  I  I  C  T  V  N  G  P  T  D  M  K  A  G  I  *  H  S  S  K  M  M  M  V  L  H  T  S  F  T  P  Q  R  T  T  V  S  F  I  L  V  H  L  M  K  S  T  W  T  *  P  N  P  *  E  G  F  L  L  D  N  T  G  K  P  L  L  C  S  N  M  K  E  P  I  T  *  S  R  Q  V  A  L  V  G  L  R  T  R  P  *  L  M  Q  L  N  Q  L  W  G  H  G  R  P  L  E  I  R  A  S  V  G  T  K  F  L  E  K  Q  L  S  L  L  R  A  H  L  C  F  L  C  L  S  Y  M  V  P  L  F  L  W  Q  I  G  G  I  Q  L  T  *  R  I  Q  G  M  F  G  Y  L  *  E  Y  R  G  Q  *  T  I  L  L  S  T  I  L  A  S  P  Y  G  P  E  C  L  F  I  G  I  K  D  G  D  F  L  I  D  G  R  K  *  I  E  *  R  N  R  K  S  F  V  Q  I  C  F  F  N  F  W  V  F  *  *  F  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48961" stop="48776"/>
                    <exon start="46646" stop="45795"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRSSGNDTYYYYPGRMWLDTEGNPIQAHGGGILHDQRTKMYYWYGEYKDGPTYHAHKKGAARVDVIGVGCYSSKDLWTWKNEGIVLAAEEHNETHDLYKLNVLERPKVIYNEKTGKYVMWMHIDDTNYTKALTGVAISDLPTGPFNYLYSKRPHGYESRDMTLFKDDDGVAYLVYSSEDNSELHIGPLNEEYMDVTQSMRRILVGQHREAPALFKHEGTYYMITSGCTGWAPNEALAHAAESIMGPWETIGNPCIGGNKVFRETTFFAQSTFVLPLPELHGSFIFMADRWNPADLKDSRYVWLPLRVSGPVDHPLEYNFGFPLWSRVSVYWHKRWRLPYRWQEIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="55867" PGL_stop="54199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55867" e_stop="55600"/>
            <exon e_start="55513" e_stop="55442"/>
            <exon e_start="55356" e_stop="54938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.140" e_score="0.989"/>
          <exon-intron don_prob="0.952" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="55867" e_stop="55600" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.140">
            <gDNA_intron_boundary i_start="55599" i_stop="55514" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55513" e_stop="55442" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.875">
            <gDNA_intron_boundary i_start="55441" i_stop="55357" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="55356" e_stop="54938" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55867" stop="55600"/>
              <exon start="55513" stop="55442"/>
              <exon start="55356" stop="54938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT : AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC : CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATATGTAAGTTACAAGCTTTAACATACTGA</gDNA_template>
            <first_frame> I  L  S  H  N  A  S  L  S  F  R  K  Y  F  H  V  Y  K  T  R  D  S  V  K  F  D  N  L  I  *  V  I  S  Y  Y  T  I  S  T  F  S  S  C  L  L  A  F  D  F  P  V  *  S  V  P  S  N  V  C  L  N  R  S  S  M  S  W  L  D  *  W  N  A  A  L  A  Q  F  Y  S  F  G  T  G  L  L  D  L  *   : *  *  S  S  A  A  G  F  *  Q  L  *  V  G  C  *  L  V  L  I  S  F  S  I   : P  L  Q  M  T  L  A  Q  L  *  R  T  F  N  R  I  L  R  T  I  A  C  K  L  Y  F  P  V  Q  I  L  E  L  L  T  K  R  W  S  R  L  A  P  R  F  I  I  S  L  L  R  Y  C  Y  L  *  Y  T  R  N  K  D  R  S  L  H  I  F  L  A  L  S  L  C  F  R  F  P  A  *  F  *  A  E  R  G  T  R  I  R  I  K  *  Y  R  G  K  *  R  R  N  N  L  *  P  L  L  W  C  T  *  L  Q  L  H  T  *  S  V  P  K  G  Y  Y  P  N  *  R  S  E  I  C  K  L  Q  A  L  T  Y  * </first_frame>
            <second_frame>  F  C  H  T  M  H  H  Y  L  L  E  S  I  F  M  C  I  K  L  E  I  L  *  N  L  I  I  L  Y  E  L  *  A  I  T  R  F  L  L  F  L  A  V  F  L  L  L  I  F  L  Y  S  Q  F  L  L  T  Y  V  *  I  D  H  Q  C  H  G  *  T  N  G  M  L  L  W  L  S  F  T  H  L  A  L  A  S  W  I  Y  N  :  N  N  P  L  L  L  D  F  D  N  S  E  L  G  A  D  W  F  *  F  L  F  P  Y  :  L  C  R  *  H  L  L  S  F  E  G  L  S  T  E  S  S  E  Q  *  L  A  N  Y  T  S  L  C  K  S  W  N  F  *  Q  N  V  G  A  D  W  R  H  G  S  *  F  H  Y  S  G  T  V  I  Y  N  I  Q  E  T  R  I  G  A  Y  I  Y  S  *  H  Y  L  C  V  F  D  F  Q  L  N  S  K  L  R  E  V  Q  G  L  G  L  N  D  I  G  E  N  S  V  G  T  I  C  D  P  F  S  G  A  P  N  Y  S  F  T  P  D  L  C  P  K  D  T  I  P  I  E  D  L  K  Y  V  S  Y  K  L  *  H  T   </second_frame>
            <third_frame>   S  V  T  Q  C  I  I  I  F  *  K  V  F  S  C  V  *  N  *  R  F  C  E  I  *  *  S  Y  M  S  Y  K  L  L  H  D  F  Y  F  F  *  L  S  S  C  F  *  F  S  C  I  V  S  S  F  *  R  M  F  K  S  I  I  N  V  M  V  R  L  M  E  C  C  F  G  S  V  L  L  I  W  H  W  P  L  G  F  I  I :   I  I  L  C  C  W  I  L  T  T  L  S  W  V  L  T  G  F  D  F  F  F  H  T :   F  A  D  D  T  C  S  A  L  K  D  F  Q  Q  N  P  Q  N  N  S  L  Q  I  I  L  P  C  A  N  P  G  T  S  D  K  T  L  E  Q  I  G  A  T  V  H  N  F  I  T  Q  V  L  L  S  I  I  Y  K  K  Q  G  *  E  L  T  Y  I  L  S  I  I  F  V  F  S  I  S  S  L  I  L  S  *  E  R  Y  K  D  *  D  *  M  I  S  G  K  I  A  *  E  Q  F  V  T  P  S  L  V  H  L  I  T  A  S  H  L  I  C  A  Q  R  I  L  S  Q  L  K  I  *  N  M  *  V  T  S  F  N  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55697" stop="55600"/>
                    <exon start="55513" stop="55442"/>
                    <exon start="55356" stop="55170"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMFKSIINVMVRLMECCFGSVLLIWHWPLGFIIIILCCWILTTLSWVLTGFDFFFHTFADDTCSALKDFQQNPQNNSLQIILPCANPGTSDKTLEQIGATVHNFITQVLLSIIYKKQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55149" stop="54946"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYLCVFDFQLNSKLREVQGLGLNDIGENSVGTICDPFSGAPNYSFTPDLCPKDTIPIEDLKYVSYKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55072" e_stop="54964"/>
            <exon e_start="54867" e_stop="54199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.993" e_score="0.972"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="55072" e_stop="54964" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54963" i_stop="54868" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="54867" e_stop="54199" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55072" stop="54964"/>
              <exon start="54867" stop="54199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594162" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT : GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTC</gDNA_template>
            <first_frame> G  K  *  R  R  N  N  L  *  P  L  L  W  C  T  *  L  Q  L  H  T  *  S  V  P  K  G  Y  Y  P  N  *  R  S  E  I   : C  S  V  K  S  H  M  L  *  R  K  F  F  R  K  L  R  G  *  R  K  I  H  S  T  G  L  I  C  D  I  I  R  L  Y  S  I  Y  S  R  P  D  R  N  I  P  *  F  A  E  P  K  S  M  L  Q  S  K  T  S  I  R  Q  H  F  T  V  P  V  Q  A  I  *  T  F  S  T  S  T  M  V  I  Y  V  V  T  L  H  S  H  D  T  F  S  T  N  I  D  S  K  S  S  P  R  N  W  K  K  L  *  Y  M  L  H  Y  S  *  K  S  *  N  N  T  K  N  L  A  R  L  Q  *  F  C  R  Q  C  T  E  N  V  D  A  L  H  F  F  F  F  F  C  S  Y  R  W  K  Y  T  V  Y  P  F  P  *  S  R  K  T  P  K  K  W  G  L  S  Y  R  K  *  K  *  R  I  L  T  K  L  V  L  D  I  L  F  L  S  C  T  R  L  N  N  C  V  H  I  *  H  E  Q  *  L  M  D  T  R  G  *  L  W  P  C  K  F  A  </first_frame>
            <second_frame>  E  N  S  V  G  T  I  C  D  P  F  S  G  A  P  N  Y  S  F  T  P  D  L  C  P  K  D  T  I  P  I  E  D  L  K  Y  :  V  L  S  K  V  T  C  Y  E  G  N  S  S  G  N  C  A  G  E  G  R  F  I  P  Q  A  S  S  V  I  L  F  A  Y  T  Q  S  I  Q  D  L  I  E  I  F  P  D  L  L  S  L  S  Q  C  S  K  V  K  Q  A  F  A  N  I  L  Q  Y  Q  C  R  P  F  R  R  S  A  R  V  L  W  S  S  M  L  S  L  S  I  L  M  I  L  L  V  L  T  L  I  V  K  A  H  Q  E  T  G  R  S  F  D  T  C  S  I  T  P  K  K  V  E  T  I  P  K  T  L  P  D  C  S  N  S  A  D  N  V  Q  K  M  *  M  L  C  I  F  F  S  F  F  V  V  I  D  G  S  I  Q  Y  T  H  S  P  E  V  V  R  R  Q  K  N  G  G  *  V  I  E  N  R  N  R  E  F  L  L  N  L  Y  L  I  Y  C  S  C  H  V  H  D  L  I  T  V  Y  I  F  D  M  N  S  D  *  W  I  L  E  A  N  F  G  L  V  N  L  L </second_frame>
            <third_frame>   K  I  A  *  E  Q  F  V  T  P  S  L  V  H  L  I  T  A  S  H  L  I  C  A  Q  R  I  L  S  Q  L  K  I  *  N  M :   F  C  Q  K  S  H  V  M  K  E  I  L  Q  E  I  A  R  V  K  E  D  S  F  H  R  P  H  L  *  Y  Y  S  L  I  L  N  L  F  K  T  *  *  K  Y  S  L  I  C  *  A  *  V  N  A  P  K  *  N  K  H  S  P  T  F  Y  S  T  S  A  G  H  L  D  V  Q  H  E  Y  Y  G  H  L  C  C  H  S  P  F  S  *  Y  F  *  Y  *  H  *  *  *  K  L  T  K  K  L  E  E  A  L  I  H  A  P  L  L  L  K  K  L  K  Q  Y  Q  K  P  C  Q  I  A  V  I  L  Q  T  M  Y  R  K  C  R  C  F  A  F  F  F  L  F  L  *  L  *  M  E  V  Y  S  I  P  I  P  L  K  S  *  D  A  K  K  M  G  V  K  L  *  K  I  E  I  E  N  S  Y  *  T  C  T  *  Y  I  V  L  V  M  Y  T  T  *  *  L  C  T  Y  L  T  *  T  V  I  D  G  Y  *  R  L  T  L  A  L  *  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55071" stop="54964"/>
                    <exon start="54867" stop="54448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENSVGTICDPFSGAPNYSFTPDLCPKDTIPIEDLKYVLSKVTCYEGNSSGNCAGEGRFIPQASSVILFAYTQSIQDLIEIFPDLLSLSQCSKVKQAFANILQYQCRPFRRSARVLWSSMLSLSILMILLVLTLIVKAHQETGRSFDTCSITPKKVETIPKTLPDCSNSADNVQKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="57579" PGL_stop="56104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57579" e_stop="57242"/>
            <exon e_start="57145" e_stop="56958"/>
            <exon e_start="56296" e_stop="56104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.841" acc_prob="0.980" e_score="0.982"/>
          <exon-intron don_prob="0.758" acc_prob="0.963" e_score="0.973"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="57579" e_stop="57242" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.841" acc_prob="0.980">
            <gDNA_intron_boundary i_start="57241" i_stop="57146" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="57145" e_stop="56958" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.758" acc_prob="0.963">
            <gDNA_intron_boundary i_start="56957" i_stop="56297" i_length="661"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="56296" e_stop="56104" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57579" stop="57242"/>
              <exon start="57145" stop="56958"/>
              <exon start="56296" stop="56104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT : TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT : AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCTTATAATTTTCAGGCAGAGCAGACGTTGAACATGACAACC</gDNA_template>
            <first_frame> T  Q  E  *  P  K  V  S  Y  *  P  Q  A  I  L  T  L  M  I  K  S  R  N  E  F  F  S  S  F  I  P  L  L  L  F  M  F  C  L  K  N  I  Q  H  H  T  I  S  S  S  C  Q  N  Y  M  E  G  F  F  F  L  S  F  F  Y  *  F  P  L  I  *  L  P  R  N  L  L  Y  L  A  S  L  I  A  I  K  F  Q  K  D  L  I  L  S  D  I  L  S  H  I  M  G  V  I  I  L  V  T  S  T  I  G  L :   L  R  V  S  Q  A  Y  M  D  M  Q  L  L  G  F  G  C  *  L  V  W  V  L  E  V  T  *  F  L  S  I  F  M  P  I  Q  L  L  Q  *  L  N  I  R  L  R  I  I  F  *  C  S  R  W  L  F  C  L  Q  F  L  P   : *  L  Q  A  A  L  L  W  L  Q  T  M  V  L  N  I  E  *  K  G  F  A  E  Q  F  L  M  L  V  V  I  H  V  N  P  S  E  G  *  *  R  F  C  *  V  C  K  L  F  *  A  L  I  I  F  R  Q  S  R  R  *  T  *  Q   </first_frame>
            <second_frame>  H  K  N  N  Q  K  F  L  T  S  H  K  L  S  *  P  *  *  S  S  Q  G  M  N  F  S  L  L  L  Y  H  F  Y  F  L  C  F  A  S  K  I  F  N  I  I  L  Y  H  H  H  A  K  I  T  W  K  G  S  S  S  F  H  S  F  I  N  F  H  *  Y  N  C  P  E  I  S  C  I  W  L  H  *  S  R  S  N  F  K  K  T  *  S  S  Q  T  F  *  V  I  *  W  E  L  *  S  W  *  Q  A  L  L  G   : F  C  G  F  H  R  H  T  W  I  C  N  C  W  D  L  V  V  S  W  F  G  F  W  K  L  H  D  F  *  V  F  S  C  Q  F  N  Y  F  N  D  *  T  F  A  F  V  L  Y  F  D  V  L  A  G  C  S  V  Y  N  S  C  H  :  S  C  K  L  R  C  F  G  C  K  Q  W  F  *  T  *  S  R  K  A  S  P  N  N  F  *  C  W  W  *  Y  M  S  I  H  Q  K  G  N  K  G  F  A  K  Y  A  N  S  F  K  P  L  *  F  S  G  R  A  D  V  E  H  D  N  </second_frame>
            <third_frame>   T  R  I  T  K  S  F  L  L  A  T  S  Y  P  N  L  N  D  Q  V  K  E  *  I  F  L  F  F  Y  T  T  F  T  F  Y  V  L  P  Q  K  Y  S  T  S  Y  Y  I  I  I  M  P  K  L  H  G  R  V  L  L  P  F  I  L  L  L  I  S  T  N  I  I  A  Q  K  S  L  V  F  G  F  I  D  R  D  Q  I  S  K  R  P  D  P  L  R  H  F  K  S  Y  N  G  S  Y  N  L  G  D  K  H  Y  W  A  :  S  A  G  F  T  G  I  H  G  Y  A  I  A  G  I  W  L  L  V  G  L  G  F  G  S  Y  M  I  F  K  Y  F  H  A  N  S  T  T  S  M  I  E  H  S  P  S  Y  Y  I  L  M  F  S  L  V  V  L  F  T  I  L  A  I :   V  A  S  C  V  A  L  A  A  N  N  G  F  E  H  R  V  E  R  L  R  R  T  I  F  D  A  G  G  D  T  C  Q  S  I  R  R  V  I  K  V  L  L  S  M  Q  T  L  L  S  P  Y  N  F  Q  A  E  Q  T  L  N  M  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57508" stop="57242"/>
                    <exon start="57145" stop="56958"/>
                    <exon start="56296" stop="56104"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFFYTTFTFYVLPQKYSTSYYIIIMPKLHGRVLLPFILLLISTNIIAQKSLVFGFIDRDQISKRPDPLRHFKSYNGSYNLGDKHYWASAGFTGIHGYAIAGIWLLVGLGFGSYMIFKYFHANSTTSMIEHSPSYYILMFSLVVLFTILAIVASCVALAANNGFEHRVERLRRTIFDAGGDTCQSIRRVIKVLLSMQTLLSPYNFQAEQTLNMTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="69665" PGL_stop="73892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71950" e_stop="72242"/>
            <exon e_start="72366" e_stop="72398"/>
            <exon e_start="72507" e_stop="73000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71950" e_stop="72242" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72366" e_stop="72398" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="72507" e_stop="73000" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71950" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71959" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="73000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</gDNA_template>
            <first_frame> V  V  T  F  S  V  R  S  F  N  Y  G  V  A  S  H  Y  Y  F  R  V  W  N  L  T  V  E  T  Y  C  H  L  L  S  E  V  D  L  K  V  *  S  M  S  E  F  Q  Y  F  K  C  I  C  L  L  W  L  L  L  N  D  S  S  C  Q  N  L  L  V  P  A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *  C  M  H  L  L  S  S  L  Y  Y  C  I  C  F  Y  R  *  M  *  D  E  S  I  Y  T  L  I  *  K  I  T  H  D  T  L  I  T  N  *  D  E  S  S  P  W  F  I  N  E  Q  F  Y  *  I  S  W  F  A  C  P  I  W  C  L  T  D  L  Y  F  Y  A  F  D  R  W  N  S  *  S  *  S  F  M  C  I  *  R  N  D  A  K  Y  V  A  P  L  R  V  L  T  N  F  K  D  L  N  C  N  L  I  Y  M  N  S  Y  F  I  A  S  S  *  F  G  F  </first_frame>
            <second_frame>  *  L  L  L  V  *  G  L  S  I  M  V  L  R  L  I  I  T  S  E  F  G  T  *  Q  L  K  L  I  V  I  F  F  L  R  *  T  *  K  Y  K  A  C  Q  N  S  N  I  L  N  A  Y  V  S  F  G  S  Y  *  M  I  P  H  V  K  T  C  L  F  Q  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  V  C  I  S  S  P  A  Y  I  T  V  F  A  F  T  D  R  C  E  M  N  P  F  I  H  S  F  R  R  *  H  M  I  L  L  L  R  I  E  M  N  L  L  H  G  L  L  M  N  S  F  I  E  S  H  G  L  P  V  L  F  G  A  *  Q  I  Y  I  F  M  P  S  I  G  G  I  L  D  L  D  H  L  C  V  F  K  G  M  M  L  N  M  L  L  P  *  E  F  *  Q  I  L  R  T  S  T  V  I  *  Y  T  *  I  L  I  L  *  P  R  A  N  L  V  S </second_frame>
            <third_frame>   S  Y  F  *  C  K  V  F  Q  L  W  C  C  V  S  L  L  L  Q  S  L  E  L  D  S  *  N  L  L  S  S  S  F  *  G  R  L  K  S  I  K  H  V  R  I  P  I  F  *  M  H  M  S  P  L  A  L  I  K  *  F  L  M  S  K  L  A  C  S  S  L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V  Y  A  S  P  L  Q  L  I  L  L  Y  L  L  L  Q  I  D  V  R  *  I  H  L  Y  T  H  L  E  D  N  T  *  Y  S  Y  Y  E  L  R  *  I  F  S  M  V  Y  *  *  T  V  L  L  N  L  M  V  C  L  S  Y  L  V  L  D  R  F  I  F  L  C  L  R  *  V  E  F  L  I  L  I  I  Y  V  Y  L  K  E  *  C  *  I  C  C  S  L  K  S  F  N  K  F  *  G  P  Q  L  *  F  D  I  H  E  F  L  F  Y  S  L  E  L  I  W  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72132" stop="72242"/>
                    <exon start="72366" stop="72398"/>
                    <exon start="72507" stop="72689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMSKLACSSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYASPLQLILLYLLLQIDVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71551" e_stop="71931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="71551" e_stop="71931" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71551" stop="71931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</gDNA_template>
            <first_frame> F  P  D  L  A  G  H  F  P  P  K  S  L  *  L  L  T  F  L  S  F  L  Q  K  S  E  L  C  S  I  G  V  I  V  V  D  R  L  F  A  C  S  M  I  D  H  L  V  S  E  K  S  T  L  Y  M  W  L  E  H  L  L  I  F  L  N  G  L  D  T  D  *  *  K  *  N  H  *  C  F  P  L  T  F  H  H  I  Q  N  F  F  L  R  F  N  W  V  I  P  E  M  T  T  K  N  N  L  Y  L  T  D  F  T  M  S  P  S  I  I  Q  S  C  V  I  P  P  C </first_frame>
            <second_frame>  F  Q  I  W  L  D  I  F  H  L  N  P  C  S  F  *  L  F  *  V  S  C  K  K  V  N  C  V  P  S  E  S  L  L  *  T  D  S  L  P  V  Q  *  L  T  T  S  Y  Q  K  N  Q  L  Y  I  C  G  W  N  T  F  *  Y  F  *  M  D  *  T  L  T  D  E  S  E  T  I  D  A  S  P  *  P  F  I  I  Y  K  T  F  S  *  G  S  T  G  *  F  Q  K  *  R  P  K  I  T  Y  I  *  Q  I  L  Q  C  H  H  P  L  F  S  L  V  S  S  H  H   </second_frame>
            <third_frame>   S  R  F  G  W  T  F  S  T  *  I  L  V  A  F  D  F  S  K  F  L  A  K  K  *  I  V  F  H  R  S  H  C  C  R  Q  T  L  C  L  F  N  D  *  P  P  R  I  R  K  I  N  S  I  Y  V  V  G  T  P  F  N  I  F  E  W  T  R  H  *  L  M  K  V  K  P  L  M  L  P  L  D  L  S  S  Y  T  K  L  F  P  E  V  Q  L  G  D  S  R  N  D  D  Q  K  *  L  I  F  D  R  F  Y  N  V  T  I  H  Y  S  V  L  C  H  P  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0132D01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="69665" e_stop="69819"/>
            <exon e_start="72161" e_stop="72242"/>
            <exon e_start="72366" e_stop="72398"/>
            <exon e_start="72507" e_stop="72628"/>
            <exon e_start="73028" e_stop="73189"/>
            <exon e_start="73509" e_stop="73892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.879" e_score="0.968"/>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="69665" e_stop="69819" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.879">
            <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72161" e_stop="72242" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72366" e_stop="72398" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72507" e_stop="72628" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.951">
            <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73028" e_stop="73189" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73509" e_stop="73892" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69665" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG : CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT : TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT : GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</gDNA_template>
            <first_frame> *  R  G  K  G  K  N  T  E  R  V  F  N  C  V  V  F  E  R  D  L  S  S  L  Y  *  Y  S  D  L  S  L  L  R  F  F  A  S  A  M  G  I  W  E  A  F  L  N  W  L  R  S :   L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V :   Y  V  V  D  A  A  D  P  D  N  L  S  I  S  S  S  E  L  H  D  L  L  S  K  P  S  L  S  G  I  P  L  L  V  L  G  N  K  I  D  K  P  D  S  L  S  K  Q  A  L  T  E  Q  M :   G  L  K  S  I  T  D  R  E  V  C  C  Y  M  I  S  C  K  N  S  T  N  I  D  S  V  I  D  W  L  V  K  H  S  K  S  K  S  *  R  *  L  *  L  F  L  F  F  C  S  G  A  D  L  Y  D  K  F  A  E  A  I  G  F  F  C  W  F  L  Q  S  S  L  V  L  *  I  K  L  F  C  L  L  S  E  L  L  H  V  F  F  L  A  I  F  R  L  N  S  L  *  L  C  L  Q  F  L  L  Y  F  L  L  V  C  C  T  S  L  C  E  R  N  G  S  F  *  V   </first_frame>
            <second_frame>  K  G  G  R  G  K  I  P  R  G  Y  L  I  V  L  C  L  R  G  I  F  L  L  Y  T  D  I  Q  I  F  L  F  Y  D  S  S  H  Q  P  W  V  S  G  K  L  F  S  I  G  F  E   : A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *   : F  M  L  L  M  L  L  I  L  I  T  S  A  Y  Q  V  V  N  S  M  T  C  *  A  S  H  L  *  V  V  F  H  C  W  C  W  E  T  K  L  T  S  L  I  P  F  P  N  R  L  *  L  S  R   : W  D  *  N  Q  *  L  I  E  K  C  A  A  I  *  S  R  A  R  I  P  P  I  L  T  Q  S  L  I  G  L  L  S  T  R  N  Q  R  A  K  D  D  F  N  F  F  F  F  F  V  V  V  L  I  C  M  I  N  L  L  R  L  L  V  F  S  A  G  F  S  R  V  L  L  Y  C  K  L  S  Y  F  V  Y  *  V  S  C  Y  M  F  F  F  L  P  F  F  V  S  T  L  S  N  C  V  C  N  S  S  Y  T  F  Y  L  S  A  A  R  V  C  V  K  G  T  D  L  F  K  F  </second_frame>
            <third_frame>   K  G  E  G  E  K  Y  R  E  G  I  *  L  C  C  V  *  E  G  S  F  F  F  I  L  I  F  R  S  F  S  F  T  I  L  R  I  S  H  G  Y  L  G  S  F  S  Q  L  A  S  K  :  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  :  L  C  C  *  C  C  *  S  *  *  P  Q  H  I  K  *  *  T  P  *  P  V  E  Q  A  I  S  E  W  Y  S  T  A  G  A  G  K  Q  N  *  Q  A  *  F  P  F  Q  T  G  F  D  *  A  D  :  G  I  E  I  N  N  *  *  R  S  V  L  L  Y  D  L  V  Q  E  F  H  Q  Y  *  L  S  H  *  L  A  C  *  A  L  E  I  K  E  L  K  M  T  L  T  F  S  F  F  L  *  W  C  *  S  V  *  *  I  C  *  G  Y  W  F  F  L  L  V  S  P  E  F  S  C  T  V  N  *  V  I  L  S  I  E  *  V  V  T  C  F  F  S  C  H  F  S  S  Q  L  S  L  I  V  F  A  I  P  L  I  L  F  T  C  L  L  H  E  F  V  *  K  E  R  I  F  L  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69743" stop="69819"/>
                    <exon start="72161" stop="72242"/>
                    <exon start="72366" stop="72398"/>
                    <exon start="72507" stop="72628"/>
                    <exon start="73028" stop="73189"/>
                    <exon start="73509" stop="73626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSDLSLLRFFASAMGIWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISSSELHDLLSKPSLSGIPLLVLGNKIDKPDSLSKQALTEQMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHSKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="88313" PGL_stop="83710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88313" e_stop="88071"/>
            <exon e_start="87540" e_stop="86461"/>
            <exon e_start="84571" e_stop="84404"/>
            <exon e_start="83792" e_stop="83710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88313" e_stop="88071" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="88070" i_stop="87541" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87540" e_stop="86461" e_length="1080"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86460" i_stop="84572" i_length="1889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84571" e_stop="84404" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="84403" i_stop="83793" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="83792" e_stop="83710" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88313" stop="88071"/>
              <exon start="87540" stop="86461"/>
              <exon start="84571" stop="84404"/>
              <exon start="83792" stop="83710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTTTTTCTAGCTTTAGAAAAACGGCTGCTTCTACAGCACCTTGTTTCTTACAAAGAAAATGGGCAGGCTCTTAATAAGAGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG : GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG : ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG : GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</gDNA_template>
            <first_frame> S  I  F  S  S  F  R  K  T  A  A  S  T  A  P  C  F  L  Q  R  K  W  A  G  S  *  *  E  G  C  V  W  R  Q  L  Y  K  T  I  W  G  G  S  I  I  I  T  S  K  F  W  V  L  G  F  Q  I  *  S  F  T  I  V  D  E  T  R  W  F  N  F  C  *  E  A  I  Y  L  F  F  L  :  V  Q  Q  W  L  S  I  *  R  S  L  I  L  A  M  N  S  E  R  K  C  S  V  T  T  M  G  D  Q  D  Q  S  P  S  S  S  G  D  D  G  H  S  K  G  Q  I  L  E  N  P  P  Q  E  K  V  N  I  E  T  E  S  E  E  T  G  I  D  W  I  S  E  L  P  D  A  L  I  V  Q  I  L  S  L  L  P  I  Q  D  A  F  R  T  S  V  L  S  K  R  W  Q  Y  P  W  T  S  I  D  N  L  I  F  D  N  R  N  T  N  W  S  N  R  E  N  V  I  N  K  F  I  S  F  T  D  N  V  L  P  L  L  C  C  S  N  I  K  K  F  C  L  Y  F  R  F  C  L  V  A  S  Y  S  S  K  I  D  K  W  L  E  I  V  L  K  K  K  V  E  D  L  D  L  E  I  W  Y  Y  D  Q  S  P  Y  V  L  P  Q  V  L  C  N  N  S  S  I  V  K  F  N  C  E  F  C  R  I  P  E  E  C  V  L  N  W  T  S  L  K  S  L  T  L  T  Y  L  F  L  R  D  E  H  V  E  Q  I  V  T  N  C  P  Q  L  E  L  L  K  L  C  E  F  C  G  F  H  R  L  H  I  T  S  P  K  C  R  S  L  Q  L  I  D  H  A  H  P  D  G  D  W  G  P  F  G  G  D  C  S  F  E  V  V  A  P  Y  I  Q  H  L  K  I  S  G  H  F  D  N  V  E  I  R  L  G  D  L  S  S  L  V  I  A  D  L  T  F  S  V  D  I  V  Y  D  N  T  V  E  L  L  L  A  S  V  R  C  A  N  E  L  M  I  P  C  W  F  I  E  :  M  I  Y  V  A  V  I  E  K  K  K  D  V  P  F  L  M  R  K  C  K  R  L  T  I  N  S  W  I  S  K  N  A  I  L  G  I  G  V  L  L  K  S  T  P  Y  L  E  N  L  T  I  L  H  E  E  :  G  D  F  F  V  W  D  E  Y  L  E  E  E  V  F  D  W  L  G  D  K  S  L  S  L  H  E   </first_frame>
            <second_frame>  Q  F  F  L  A  L  E  K  R  L  L  L  Q  H  L  V  S  Y  K  E  N  G  Q  A  L  N  K  R  G  A  F  G  G  N  Y  I  K  Q  F  G  E  A  Q  L  S  S  R  V  N  F  G  F  *  G  F  K  F  D  H  S  P  L  S  T  K  H  D  G  L  T  S  V  E  R  R  F  I  C  S  S  W :   Y  S  S  G  *  A  Y  R  G  L  S  F  L  Q  *  T  R  K  G  N  V  V  *  Q  P  W  A  T  K  T  N  L  L  A  V  L  V  M  M  D  I  L  K  A  R  F  L  K  T  H  L  R  K  K  *  T  L  R  Q  K  V  K  K  L  A  L  I  G  S  A  S  Y  L  T  L  *  L  Y  K  F  S  L  Y  C  P  Y  K  M  L  S  E  H  L  F  S  L  N  V  G  N  T  P  G  L  L  *  T  T  L  F  L  T  T  E  I  P  I  G  P  I  E  R  M  *  L  I  S  S  F  P  S  Q  T  M  Y  Y  L  S  F  A  A  L  I  L  K  S  S  V  Y  I  S  D  F  A  L  L  L  L  I  V  P  K  L  T  S  G  L  K  L  F  *  R  K  K  W  R  I  L  T  W  K  Y  G  I  M  I  K  A  P  M  S  C  H  K  F  S  A  T  T  H  P  L  *  N  L  I  A  S  F  A  E  Y  Q  K  N  V  Y  *  T  G  H  P  *  R  V  *  H  *  P  I  C  F  F  G  T  N  M  L  N  K  *  *  Q  I  V  L  S  W  N  C  *  S  Y  V  S  F  V  V  F  I  A  Y  I  *  L  L  Q  N  V  G  V  C  N  *  L  I  M  P  I  L  M  E  I  G  V  H  L  A  V  I  V  P  S  K  *  L  P  H  I  F  N  I  *  R  F  R  G  I  L  I  M  W  K  *  D  L  G  T  F  H  L  *  S  L  L  I  L  L  S  L  L  I  L  Y  M  T  I  P  W  N  F  S  W  Q  V  Y  V  V  L  M  S  *  *  S  H  A  G  L  S  R :   *  F  M  W  R  *  *  K  R  R  K  M  F  H  F  *  C  G  S  A  N  G  *  R  *  I  L  G  F  Q  K  M  P  F  S  A  *  V  F  S  *  S  Q  L  L  I  W  R  I  *  R  Y  F  M  K  R :   E  I  S  L  S  G  M  N  T  W  K  K  K  C  L  I  G  *  E  T  N  P  S  P  C  M  K  </second_frame>
            <third_frame>   N  F  F  *  L  *  K  N  G  C  F  Y  S  T  L  F  L  T  K  K  M  G  R  L  L  I  R  G  V  R  L  A  A  T  I  *  N  N  L  G  R  L  N  Y  H  H  E  *  I  L  G  S  R  V  S  N  L  I  I  H  H  C  R  R  N  T  M  V  *  L  L  L  R  G  D  L  F  V  L  P   : G  T  A  V  V  K  H  I  E  V  S  H  S  C  N  E  L  G  K  E  M  *  C  D  N  H  G  R  P  R  P  I  S  *  Q  F  W  *  *  W  T  F  *  R  P  D  S  *  K  P  T  S  G  K  S  E  H  *  D  R  K  *  R  N  W  H  *  L  D  Q  R  A  T  *  R  S  N  C  T  N  S  L  S  I  A  H  T  R  C  F  Q  N  I  C  S  L  *  T  L  A  I  P  L  D  F  Y  R  Q  P  Y  F  *  Q  P  K  Y  Q  L  V  Q  *  R  E  C  D  *  *  V  H  F  L  H  R  Q  C  T  T  S  P  L  L  L  *  Y  *  K  V  L  S  I  F  P  I  L  P  C  C  F  L  *  F  Q  N  *  Q  V  A  *  N  C  F  E  E  K  S  G  G  S  *  P  G  N  M  V  L  *  S  K  P  L  C  L  A  T  S  S  L  Q  Q  L  I  H  C  K  I  *  L  R  V  L  Q  N  T  R  R  M  C  T  K  L  D  I  P  E  E  F  D  T  N  L  F  V  S  S  G  R  T  C  *  T  N  S  N  K  L  S  S  V  G  I  V  E  A  M  *  V  L  W  F  S  S  L  T  Y  N  F  S  K  M  *  E  S  A  I  D  *  S  C  P  S  *  W  R  L  G  S  I  W  R  *  L  F  L  R  S  S  C  P  I  Y  S  T  S  K  D  F  G  A  F  *  *  C  G  N  K  T  W  G  P  F  I  F  S  H  C  *  S  Y  F  L  C  *  Y  C  I  *  Q  Y  R  G  T  S  L  G  K  C  T  L  C  *  *  A  N  D  P  M  L  V  Y  R   : D  D  L  C  G  G  D  R  K  E  E  R  C  S  I  S  D  A  E  V  Q  T  V  D  D  K  F  L  D  F  K  K  C  H  S  R  H  R  C  S  L  K  V  N  S  L  S  G  E  F  D  D  T  S  *  R   : G  R  F  L  C  L  G  *  I  L  G  R  R  S  V  *  L  V  R  R  Q  I  P  L  L  A  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87516" stop="86461"/>
                    <exon start="84571" stop="84404"/>
                    <exon start="83792" stop="83712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLILAMNSERKCSVTTMGDQDQSPSSSGDDGHSKGQILENPPQEKVNIETESEETGIDWISELPDALIVQILSLLPIQDAFRTSVLSKRWQYPWTSIDNLIFDNRNTNWSNRENVINKFISFTDNVLPLLCCSNIKKFCLYFRFCLVASYSSKIDKWLEIVLKKKVEDLDLEIWYYDQSPYVLPQVLCNNSSIVKFNCEFCRIPEECVLNWTSLKSLTLTYLFLRDEHVEQIVTNCPQLELLKLCEFCGFHRLHITSPKCRSLQLIDHAHPDGDWGPFGGDCSFEVVAPYIQHLKISGHFDNVEIRLGDLSSLVIADLTFSVDIVYDNTVELLLASVRCANELMIPCWFIEMIYVAVIEKKKDVPFLMRKCKRLTINSWISKNAILGIGVLLKSTPYLENLTILHEEGDFFVWDEYLEEEVFDWLGDKSLSLHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="90701" PGL_stop="95386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90701" e_stop="90919"/>
            <exon e_start="91827" e_stop="91915"/>
            <exon e_start="93608" e_stop="93737"/>
            <exon e_start="94507" e_stop="94536"/>
            <exon e_start="95017" e_stop="95386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90701" e_stop="90919" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91827" e_stop="91915" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93608" e_stop="93737" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.980">
            <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94507" e_stop="94536" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="95017" e_stop="95386" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90701" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90749" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG : GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA : ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG : GTGAAGAAACGACACACACCATTGTTAAAG : ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGATTGTCGGTTGAGTTTGTT</gDNA_template>
            <first_frame> G  K  V  I  S  G  F  I  T  S  A  G  F  Y  H  L  R  Q  M  A  S  S  L  R  R  L  A  T  H  S  S  Q  A  A  W  R  S  S  V  T  P  L  C  R  Q  F  A  S  E  A  L  V  E  I  K  P  G  E  I  G  M  V  S  G  I  P  D  E  H  L  R  R  R  :  V  V  I  F  S  P  A  R  T  A  S  Q  Q  G  S  G  K  V  G  R  W  K  I  N  F  M  S  T  Q  K :   W  E  N  P  L  M  G  W  T  S  T  G  D  P  Y  A  N  V  G  D  S  A  L  S  F  E  S  E  E  A  A  K  A  F  A  E  K  H  G  W  E  Y  T  :  V  K  K  R  H  T  P  L  L  K  :  I  K  S  Y  A  D  N  F  K  W  K  G  P  P  K  A  A  E  *  F  I  F  Y  F  N  S  S  T  *  G  A  C  G  C  S  T  *  C  P  A  F  C  F  L  F  F  F  T  F  S  K  V  G  Q  I  S  F  L  K  D  L  I  N  Q  T  Y  E  N  P  Q  V  H  A  M  S  *  N  L  C  E  A  I  S  G  C  F  C  T  C  G  T  L  C  R  V  K  T  L  V  A  L  F  F  S  P  K  E  I  S  V  S  K  Y  L  R  T  V  I  V  G  *  V  C  </first_frame>
            <second_frame>  A  K  *  Y  L  A  S  S  L  R  P  D  S  I  I  S  G  K  W  L  A  L  S  D  D  *  R  R  I  P  L  K  P  P  G  D  L  L  *  R  R  Y  V  D  N  L  R  Q  K  R  W  S  K  S  S  P  E  R  S  V  W  S  L  V  F  Q  M  N  I  F  V  E  G :   L  *  F  S  L  L  L  G  L  L  V  N  K  A  L  E  K  L  A  D  G  K  S  I  S  C  L  P  R   : N  G  R  I  H  *  W  G  G  H  P  Q  G  I  H  M  P  M  L  V  I  Q  L  L  V  L  R  V  K  K  L  Q  K  H  S  L  K  S  M  V  G  N  I  R :   *  R  N  D  T  H  H  C  *  R :   S  S  H  M  R  T  T  L  S  G  R  D  L  P  R  Q  Q  N  N  L  F  S  T  S  I  Q  V  L  E  V  L  V  D  V  L  P  N  A  L  H  S  V  F  F  F  F  L  P  S  L  K  L  G  R  S  P  S  *  R  I  *  *  I  K  L  M  K  I  H  K  Y  M  Q  C  L  K  T  F  V  K  Q  F  P  G  V  S  V  L  V  G  H  C  V  V  S  K  H  *  *  P  C  F  S  L  Q  K  K  L  A  C  Q  N  T  Y  E  L  *  L  S  V  E  F  V </second_frame>
            <third_frame>   Q  S  N  I  W  L  H  H  F  G  R  I  L  S  S  Q  A  N  G  *  L  S  P  T  T  S  D  A  F  L  S  S  R  L  A  I  F  C  D  A  A  M  *  T  I  C  V  R  S  V  G  R  N  Q  A  R  R  D  R  Y  G  L  W  Y  S  R  *  T  S  S  *  K   : G  C  D  F  L  S  C  S  D  C  *  S  T  R  L  W  K  S  W  Q  M  E  N  Q  F  H  V  Y  P  E  :  M  G  E  S  I  D  G  V  D  I  H  R  G  S  I  C  Q  C  W  *  F  S  S  *  F  *  E  *  R  S  C  K  S  I  R  *  K  A  W  L  G  I  Y   : G  E  E  T  T  H  T  I  V  K   : D  Q  V  I  C  G  Q  L  *  V  E  G  T  S  Q  G  S  R  I  I  Y  F  L  L  Q  F  K  Y  L  R  C  L  W  M  F  Y  L  M  P  C  I  L  F  S  F  F  F  Y  L  L  *  S  W  A  D  L  L  L  E  G  F  N  K  S  N  L  *  K  S  T  S  T  C  N  V  L  K  P  L  *  S  N  F  R  V  F  L  Y  L  W  D  I  V  S  C  Q  N  T  S  S  L  V  F  L  S  K  R  N  *  R  V  K  I  L  T  N  C  D  C  R  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90701" stop="90919"/>
                    <exon start="91827" stop="91915"/>
                    <exon start="93608" stop="93737"/>
                    <exon start="94507" stop="94536"/>
                    <exon start="95017" stop="95073"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKVISGFITSAGFYHLRQMASSLRRLATHSSQAAWRSSVTPLCRQFASEALVEIKPGEIGMVSGIPDEHLRRRVVIFSPARTASQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYANVGDSALSFESEEAAKAFAEKHGWEYTVKKRHTPLLKIKSYADNFKWKGPPKAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90762" e_stop="91491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="90762" e_stop="91491" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90762" stop="91491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATA</gDNA_template>
            <first_frame> A  L  S  D  D  *  R  R  I  P  L  K  P  P  G  D  L  L  *  R  R  Y  V  D  N  L  R  Q  K  R  W  S  K  S  S  P  E  R  S  V  W  S  L  V  F  Q  M  N  I  F  V  E  G  Y  N  F  F  S  L  C  L  F  A  N  I  Y  Y  F  V  R  S  F  R  C  M  K  N  F  I  V  G  Y  Q  F  I  R  A  S  I  A  D  P  W  V  P  L  F  R  V  S  K  *  F  G  K  W  I  W  R  I  H  I  V  R  I  N  *  F  E  I  D  I  V  D  *  L  L  F  I  F  A  F  V  N  L  C  Y  L  *  S  E  D  Y  S  F  L  A  L  L  L  S  S  S  L  L  F  N  D  I  E  E  T  I  A  A  *  T  L  V  T  S  K  K  L  *  V  F  M  V  G  S  S  F  C  L  A  S  I  K  L  N  L  D  L  L  E  L  E  L  I  S  L  N  I  R  P  Q  L  G  L  M  Q  T  F  S  P  R  R  F  F  I  H  F  C  T  N  L  V  I  *  I  S  Y  Q  I  Y  N  L  I  Y  I  I  Y  </first_frame>
            <second_frame>  L  S  P  T  T  S  D  A  F  L  S  S  R  L  A  I  F  C  D  A  A  M  *  T  I  C  V  R  S  V  G  R  N  Q  A  R  R  D  R  Y  G  L  W  Y  S  R  *  T  S  S  *  K  G  I  I  S  F  L  Y  V  S  S  L  I  S  I  I  L  S  G  H  L  G  V  *  K  T  S  L  *  V  T  N  L  L  G  L  L  *  Q  I  H  G  F  R  Y  L  G  L  A  N  D  L  G  N  G  Y  G  G  S  I  *  L  E  S  I  D  L  K  L  I  *  L  I  D  C  F  S  F  L  P  L  *  I  Y  V  T  S  N  P  K  T  I  P  F  *  P  S  F  C  L  P  R  S  Y  S  M  I  *  K  R  P  *  L  L  R  H  L  *  Q  V  K  S  C  K  F  S  W  *  G  V  V  S  A  W  Q  V  L  S  *  T  W  T  F  *  S  L  N  *  *  A  L  I  S  D  P  S  L  D  *  C  K  L  F  P  H  G  G  F  S  S  I  S  A  Q  I  *  L  Y  R  F  L  I  K  S  I  I  *  S  I  S  S  I </second_frame>
            <third_frame>   S  L  R  R  L  A  T  H  S  S  Q  A  A  W  R  S  S  V  T  P  L  C  R  Q  F  A  S  E  A  L  V  E  I  K  P  G  E  I  G  M  V  S  G  I  P  D  E  H  L  R  R  R  V  *  F  L  F  F  M  S  L  R  *  Y  L  L  F  C  Q  V  I  *  V  Y  E  K  L  H  C  R  L  P  I  Y  *  G  F  Y  S  R  S  M  G  S  A  I  *  G  *  Q  M  I  W  E  M  D  M  E  D  P  Y  S  *  N  Q  L  I  *  N  *  Y  S  *  L  I  A  F  H  F  C  L  C  E  F  M  L  P  L  I  R  R  L  F  L  F  S  P  P  F  V  F  L  A  P  I  Q  *  Y  R  R  D  H  S  C  L  D  T  C  D  K  *  K  V  V  S  F  H  G  R  E  *  F  L  L  G  K  Y  *  V  E  L  G  P  S  R  A  *  I  D  K  P  *  Y  Q  T  P  A  W  I  N  A  N  F  F  P  T  E  V  F  H  P  F  L  H  K  F  S  Y  I  D  F  L  S  N  L  *  S  D  L  Y  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90819" stop="91067"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRYVDNLRQKRWSKSSPERSVWSLVFQMNIFVEGYNFFSLCLFANIYYFVRSFRCMKNFIVGYQFIRASIADPWVPLFRVSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 60 chains have been computed
$ 
$ memory statistics:
$ 54008 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 2160 bytes was the average size of a spliced alignment
$ 23872 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1591 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 65 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:16:48
-->
