<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:17:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569242" ref_strand="+" ref_description="SGN-U569242 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|147854406|emb|CAN81292.1| (e_value=0) hypothetical; (*ATH) AT4G17020.1 (e_value=0)  Symbol: None | transcription factor-related, contains weak similarity to Swiss-Prot:Q92759 TFIIH basal transcription factor complex p52 subunit (Basic transcription factor 52 kDa subunit, BTF2-p52, General transcription factor IIH polypeptide 4) (Ho... ; (*SWP) sp|P60027|TF2H4_PANTR (e_value=9e-74) General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4; ">
      <seq>tatgtattagcagaaattaggggagaatcatcatcattcaacaacagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacagaaacatttgacaggaaaaaggaagccatgtatcaactaaacccaaaatttcaatttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattcttgctaatggacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcgaggagtggattcagcagatcttattgcatttcttttggagctaagctttcatgttactggcaaggcatacaatacaaacacaataactgatctccagagaagtataattaaggacctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgccagagaatatggaggattactgtgggaggactctaagcgcatgcgtctcgttgttaaagctgatattttagccgagatgaaggaatttcttcgtcgtcaaaagcaataactcttctttgcatactgtcttcatttaaatgaagggtttcatcagttatgtccatctatatatttattcccaacttaacttgtacatgaattttgttgtgggtgtattgtatttcattgtgcttcgatttccttctttcgacaccttgtgatgttgtactaataatgggactacaaatcatcgtcaaaactattgattagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="4539" stop="11761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4839" g_stop="5057" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5058" i_stop="5529" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5530" g_stop="5697" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="387" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5698" i_stop="6363" i_length="666">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6364" g_stop="6432" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="456" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6433" i_stop="7000" i_length="568">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7001" g_stop="7094" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="550" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7095" i_stop="7262" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7263" g_stop="7363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="651" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7364" i_stop="7494" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7495" g_stop="7543" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="700" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7544" i_stop="7621" i_length="78">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7622" g_stop="7681" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="760" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7682" i_stop="8357" i_length="676">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8358" g_stop="8426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="829" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="8427" i_stop="8737" i_length="311">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8738" g_stop="8821" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="913" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="8917" g_stop="9000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="914" r_stop="997" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="9340" g_stop="9425" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="998" r_stop="1083" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="9774" g_stop="9864" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1084" r_stop="1174" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="10620" g_stop="10700" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1175" r_stop="1255" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="10701" i_stop="10951" i_length="251">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="10952" g_stop="11026" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1256" r_stop="1330" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="11027" i_stop="11121" i_length="95">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="11122" g_stop="11461" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1331" r_stop="1671" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U569242" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4839" e_stop="5057"/>
          <exon e_start="5530" e_stop="5697"/>
          <exon e_start="6364" e_stop="6432"/>
          <exon e_start="7001" e_stop="7094"/>
          <exon e_start="7263" e_stop="7363"/>
          <exon e_start="7495" e_stop="7543"/>
          <exon e_start="7622" e_stop="7681"/>
          <exon e_start="8358" e_stop="8426"/>
          <exon e_start="8738" e_stop="8821"/>
          <exon e_start="8917" e_stop="9000"/>
          <exon e_start="9340" e_stop="9425"/>
          <exon e_start="9774" e_stop="9864"/>
          <exon e_start="10620" e_stop="10700"/>
          <exon e_start="10952" e_stop="11026"/>
          <exon e_start="11122" e_stop="11461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTATTAGCAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAGGTATTGCTGACCACCTCCTTCTCTCCCTGCATGTGTGTGTATGTGTGTCTCAAGCTCCATTGGTTCATTGGGTGGTGTTGTAATTCAGTTACATTTGACATTTGCTTATCCCTCACTTTTGCGGCTAGTCTTCTGATAGACTTTGGAGATAGGTAGGGAGGAATTTTCAGAGATGCAGCTTCGGCCTTTGTAGAGCTTGCTATAATTATATCACCTACTCTGCCTCTCTAAGGTCGTCAAAGCGAAAGCATTCCCAAGCCTGAATAGAGGAAGAGAGTTGAGGGAAACCGGTGGCGAATGTAGCAATAGTCAAACTATTTTGAATACTGAAAAAATGTGCAGATTGGATACAGGCGTTTCATACAAGATCATATAGCTAACCCCAATTAGTTTGGGGATTGGAACCTAGTTGAGTTGAGCTTATTAGTTCCACCTTAGATTTTATCGTTGCTGATAACATATTTTAGGCACTTTTTCCTTGTTTCCTTACCTCTTTAAATTAGTTAATACAAGCAAGAATCAAGAAGATATTCTTTCTTTGATTTAAGATTTTGGTTGAGAAGATATTGTGCCTATGACCATTATTTGGATTGTCTAGTATGGACTTCTATTTGTATAACTTTTGGACAATTTAATGATATTAAATGATTACTCTGTATTTTTCATATTAATGCAGGAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAGGTATTATTAGACAGTTCTAGAGCTTCTTGAATTAAGTTTGTCCTGGAGCTGTAGTAATGATACCATCTTTTGAACTCTAAATGCTTGAATTTTAGTTAGTTCTGGTTCTGGAGCACTCAGATGTTTGGTTGAAAAGTGGTGAATTTGTTTTTGCAGAAAGTTTTGTACTTTGACTTTAAAAAACAATATTTGAAAAACTGAAAAATATTGTGACGAAGTCTTTCAACCATTTTCCCAACCACACAGTTGTAATCTTCATTTCTTCAGTATGCTCAAGTTTCGTATGTTTGTTGAATTTTCTTCTGATATAGGCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGA-TAGCCT</genome_strand>
        <mrna_strand>TATGTATTAGCAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG..............................................................................CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG.......................................................................................................................................................................................................................................................................................................................GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATTAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569469" ref_strand="+" ref_description="SGN-U569469 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157331587|emb|CAO66005.1| (e_value=3e-49) unnamed; (*ATH) AT2G20740.1 (e_value=2e-46) | Symbol: None | expressed protein | chr2:8942688-8944591 FORWARD | Aliases: F5H14.29, F5H14_29, AT2G20730; ">
      <seq>tcttggaaatttcttctgagcctatctggggaaatttttgcatatctaggcatgtcaccatcactattatttcttttaaaaaaatcaacaatctaaacagttataaatcacatcaatattctttctaatgaactcttccaagcacccttaaaaacataacaacaatttacctagcaagtgctcttctatttcccctcctaagtgaatgaaacagctcctgtttaaaattcaagatggtaaaacttgtaaagagttacctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgctcatctatggtgtatggatgatcagagtttggcagcgcgatgctgccaactcaccctcatcccctgattatgctcaatttccttggtttatccatgcatttcttggtgttggcactgctttgtgtgcaatcactttccttggtcatgttgcagcaagcactgccaattcctattgcctctcattttatatgttcttcatatttgtgcttcttttagcagagattgcaattacagctgatgttttcttgaactctgattgggagaaggatttgcctgaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatgtctgccaatggattaccctgctttgtgttctaacacagggatgttgtatcttattggctacaattctaagaactcttgggcaagttaaggaaaatagtcatgagtatgaaggtgaatatgcagaaccatcagctccacttcttcgccctccgcaactgcctccaaatcctctgtatccatatgttattggtgaaccagttcatattgaaccacattctgcctacaagaatgtttgagttttggaagacaattggtttgatccctttgtaaaactatgaaatcttgaaacctctctttttggcttattatgttattgaagtttgcagaagttgaagtgaatgaagttatcctttatggaaaaatatgctatgtagcttttccaattgcttaagaatgagctttgttaatcagaaacagatgagaccattttatgtataattaagattgtgagttttgcaacttttatgtttttgagtggtatcatttttgtttattacaatgaacaatgatattacattgtttatgcatgttgaacttttttggactttttcatatattaaactctcctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="11459" stop="13922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11759" g_stop="12158" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12159" i_stop="12250" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12251" g_stop="12350" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="500" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12351" i_stop="12466" i_length="116">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12467" g_stop="12547" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="581" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12548" i_stop="12892" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12893" g_stop="12997" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="686" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12998" i_stop="13088" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.354" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13089" g_stop="13622" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="1220" r_length="534" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U569469" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11759" e_stop="12158"/>
          <exon e_start="12251" e_stop="12350"/>
          <exon e_start="12467" e_stop="12547"/>
          <exon e_start="12893" e_stop="12997"/>
          <exon e_start="13089" e_stop="13622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGAAATTTCTTCTGAGCCTATCTGGGGAAATTTTTGCATATCTAGGCATGTCACCATCACTATTATTTCTTTTAAAAAAATCAACAATCTAAACAGTTATAAATCACATCAATATGCTTTCTAATGAACTCTTCCAAGCACCCTTAAAAACATAACAACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTTGTATCCTTTTTTCTTTATATTTCTCATATATAAAATAGTCTTTGAGTAAATTTATTTTTGGTCCTAAATGAAACTGCATTGAGAGAAACAAAAATGGACCTTAACTATACTTATAGTATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTCTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTCTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTCTTTGGACTTCTTCATATATTAAACTCTCCTAATG</genome_strand>
        <mrna_strand>TCTTGGAAATTTCTTCTGAGCCTATCTGGGGAAATTTTTGCATATCTAGGCATGTCACCATCACTATTATTTCTTTTAAAAAAATCAACAATCTAAACAGTTATAAATCACATCAATATTCTTTCTAATGAACTCTTCCAAGCACCCTTAAAAACATAACAACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT....................................................................................................................TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG...........................................................................................GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTTTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTTTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTTTTTGGACTTTTTCATATATTAAACTCTCCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568639" ref_strand="+" ref_description="SGN-U568639 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|147854404|emb|CAN81290.1| (e_value=1e-108) hypothetical; (*ATH) AT3G47160.1 (e_value=4e-85) | Symbol: None | expressed protein, similar to MTD2 (Medicago truncatula) GI:9294812; supporting cDNA gi:25083983:gb:BT002136.1: | chr3:17370976-17372990 REVERSE | Aliases: F13I12.210; ">
      <seq>ttacngccggggnntcttacatttttttttctctttcttcattctgtacagtaaaagaagctgtgaaaaagaaagaagaaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgatgtatttagtttccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18638" stop="13432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18352" g_stop="17984" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="520" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="587" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16248" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="822" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14311" g_stop="13728" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="1406" r_length="584" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U568639" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18352" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16248"/>
          <exon e_start="14311" e_stop="13728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGGATAAGAACTCTTACATTTTTTTTTCTCTTTCTTCATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCAATCTG</genome_strand>
        <mrna_strand>TTACNGCCGGGGNNTCTTACATTTTTTTTTCTCTTTCTTCATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595214" ref_strand="+" ref_description="SGN-U595214 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147854404|emb|CAN81290.1| (e_value=3e-48) hypothetical; (*ATH) AT3G47160.1 (e_value=1e-38) | Symbol: None | expressed protein, similar to MTD2 (Medicago truncatula) GI:9294812; supporting cDNA gi:25083983:gb:BT002136.1: | chr3:17370976-17372990 REVERSE | Aliases: F13I12.210; ">
      <seq>gattctgtacagtaaaagaagctgtgaaaaagaaagaagaaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggtatgtttaattttgcagtttgtctgagatagaagatgtgtgttaagtttaactactatattcagatctctatcatcccacgccaactctacatttcctttgcactctttctaacccccttcatacactttgatgttcacagaacagctgtcgagtgcttcctggggtgaggttctgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18612" stop="15767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18313" g_stop="17984" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="395" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16838" i_stop="16605" i_length="234">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16604" g_stop="16584" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="416" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16067" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="832" r_length="416" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U595214" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18313" e_stop="17984"/>
          <exon e_start="16903" e_stop="16839"/>
          <exon e_start="16604" e_stop="16584"/>
          <exon e_start="16482" e_stop="16067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGG</genome_strand>
        <mrna_strand>GATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAG..........................................................................................................................................................................................................................................CAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTTGATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGGGTGAGGTTCTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568867" ref_strand="+" ref_description="SGN-U568867 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>agaaaaaccagagagattggattcttgtcataataatcttcaattgaatcaatgctaaatgaatacccttatcacaaaaagattcaatcttcaaattttccctcaaaattttctctctcactttccacaactttccaagaaaaccccacataacactcatccatttccaagaaaattttcatttactgccaagactctaactttatgctctgttgcagcttctgaatcattgtcttgtggtggctgggatgacccaagtttcattggtgatccaattagccctgggttctgcacgtgatgccgacaaagttttcttggctgcaattgataagttcgatgcaatgatctccagaggaaatgtatatgcacctgatggtatgagaaataactattcgtccatactgtaaatttagagtctttactaatccatggttgcctctttttttttttttttttttgtctttacattttaataagagaagtaggaagaagtattttagaatcctgggcttataatcattccagcaatgaccgttgtttaactgttcttctttctctcttttgcggtggagctacaaaatctatcaacaataaaggagctcgccctgccacttcttcgtcatcagttcctaatgttttgattaggaactaatgaaaggagaaagttggtgtcatctctgggccagttgatgatgtatgagcttttgatattctctcgtctccttttgctttgctaaaagttgaactggtaaaagtgatgtgtcatctttggcgaacttaaagttagataagaacaaatgaactagtaagtgcgcgtggaaagcaaatatcatccccctctcctcgcatttatgctgctcattgttttaataataatagtaatgagctggtcattatatagctaggccttaatggatgagtagcatcagcatcattaagatggagttactatttcacaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="29131" stop="32613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29431" g_stop="29714" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29715" i_stop="31635" i_length="1921">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31636" g_stop="32313" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="962" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U568867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>962</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29431" e_stop="29714"/>
          <exon e_start="31636" e_stop="32313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAACCAGAGAGATTGGATTCTTGTCATAATAATCTTCAATTGAATCAATGCTAAATGAATACCCTTATCACAAAAAGATTCAATCTTCAAATTTTCCCTCAAAATTTTCTCTCTCACTTTCCACAACTTTCCAAGAAAACCCCACATAACACTCATCCATTTCCAAGAAAATTTTCATTTACTGCCAAGACTCTAACTTTATGCTCTGTTGCAGCTTCTGAATCATTGTCTTGTGGTGGCTGGGATGACCCAAGTTTCATTGGTGATCCAATTAGCCCTGGTGAGTCCAACAAGCTTCATAATTTTCTTAATAAACTAGGAATTAATGATAAAAAGTATGTCTTTGTTTGCCTCTTGGGGTTTGTTTGTGCTTTGGCTATTTCAAGGGTGAAAGTTTCTTCAATTATAGCAATTCCTGGTTGTGTTATTGTTTTTGCACTTGGGTTTTCAATTGGGGTTTTTAATGGTGGTAAAATGAACTTAGATGGTAATAAGAGGTTGCATCAAGATCAGATTTTTAAAGATTTTATTGAGAAATTAAGGGTTTTGGTGGATTTTCTTAGTGGGGTTGATGTAGAGATTGGTAATTTGAAGAAGGGTGTTAGGAAAGGAATTGAGAATAATCAAATTACTGTGGAAGATTTGGGAAGTTTCGAAAAGAGTCTGGAATCTATAAATTTTTCTGCTCTCAATGCTAGAAAGGTTATAGAAGGTTGTATTGAAAGCTTGTCAATTGATGGACAAGATATAGGGGGGGAAATCAGTCAAAAATCGAGTAAGAAGAAGAAGGAGCCGGGTAAATATGGCTTCGACTTCTTTCAGATTGCTGCTGGTCTGTTTCAAGCAAAGTCGGGTTCGAAGTCTACTAAAATGAAAGATCATGGTGACACTGAGTTAATGGACAGAAAGATGAATGGCCCTAAGCAAGGGAATATCTTGAGTTCTACTACTAAAGAAAGACATTTGAATTTTGATATGGATCTAGACGGCCTTAGTGGCACTTCAAGGCACAGTTTCAATGATGATGCCATTAGACAAGACAGAGTGGGTGAGACATTTGGGAAGGCTAGCAGAATGAATGTAGTTTCTGATGGAAATTTCAATTTTTCCGAGATGGATAGTAACACTGTTAAATCAGTTTTCAACAGAGAAGAATATAGTTACCAGACAAGTAGAGTACAATTTATGAGGAACCAACGGGTGTCTCATAGAATGAGTCATCCTTGTAAATTTGAATCTTGGGCTTCTGATGATGGTTTAGCTGATTCTATTGATTTTGGCGTCAGTATGGAGCAAAGCAATACTGAAGCATCTTCGTTGCATGAAAAGGACGTCGAGAATTTTGAAGGAGTAAGGAGCCATTTTGGTGGAAAAGAAAATGATGAAGACACCTACAGTCATTTTCTTGGAGAAGAGATGAGAAACCCTGAAAAGGAACCCTCCATGGGTAGAGATGAGGCCTCAAATGAATGTGAATCTGGTCACTCTCCATCTTCAGGAGGTTCCATTGATTTGCAATTTAATAAGTACCTTACTGAGGCAAATATTCTAGTACAAGAAGCAAAGGACTGTTTAAGGAGGCAAGACGGCGACAAGCATGCTGAGAATGCGTTTTACGAGTCTGCTGTATTGCTCTCAAAAGCTATAGATATCCGCCCCATGAGTTTATTGGCTGTGGGACAGTTGGGAAATACTTACCTTCTTCATGGAGAACTTAAGTTAAGGATCAGCCGTGATTTGAGAGCTTTACTAACTGATGCTGTATCATTAAATAAACGGGCTAAAATACGTGATGCGCTAGATGATACGGTTCCAAGGGAAGACAAAATTACATCTTATCTTGTAAATGTATGTGAAGAGTGTGAAGAACTACTTATTAAGGCAGGAAGACAGTATAGGTTAGCCTTGTCGATAGATGGGAATGATATGAGAGCTTTGTATAATTGGGGAATTGCTCTCTCGTTGCGTGGGCAGTTGATTGCAGACATTGGACCTGTAAGCATCTTTCTTGAGATTACTTGGTTTAATTTTCTCTTTTCTGATGGTTTGAACTGAAAATTGTGAAATGAGATCAATATCTCATATTATGGACTAAATTCAAATAGCATTGCTTAGCAGTTCTCTGCTCTCTCACTAAAGCTACTAGATTGTTTGGGAACTTTTTCTACCCCTTTCATAGTCAATGTTCTGCCAAATTTCAGGGTTCTGCACGTGATGCCGACAAAGTTTTCTTGGCTGCAATTGATAAGTTCGATGCAATGATCTCCAGAGGAAATGTATATGCACCTGATGGTATGAGAAATAACTATTCGTCCATACTGTAAATTTAGAGTCTTTACTAATCCATGGTTGCCTCTTTTTTTTTTTTTTTTTTTGTCTTTACATTTTAATAAGAGAAGTAGGAAGAAGTATTTTAGAATCCTGGGCTTATAATCATTCCAGCAATGACCGTTGTTTAACTGTTCTTCTTTCTCTCTTTTGCGGTGGAGCTACAAAATCTATCAACAATAAAGGAGCTCGCCCTGCCACTTCTTCGTCATCAGTTCCTAATGTTTTGATTAGGAACTAATGAAAGGAGAAAGTTGGTGTCATCTCTGGGCCAGTTGATGATGTATGAGCTTTTGATATTCTCTCGTCTCCTTTTGCTTTGCTAAAAGTTGAACTGGTAAAAGTGATGTGTCATCTTTGGCGAACTTAAAGTTAGATAAGAACAAATGAACTAGTAAGTGCGCGTGGAAAGCAAATATCATCCCCCTCTCCTCGCATTTATGCTGCTCATTGTTTTAATAATAATAGTAATGAGCTGGTCATTATATAGCTAGGCCTTAATGGATGAGTAGCATCAGCATCATTAAGATGGAGTTACTATTTCACAAAGA</genome_strand>
        <mrna_strand>AGAAAAACCAGAGAGATTGGATTCTTGTCATAATAATCTTCAATTGAATCAATGCTAAATGAATACCCTTATCACAAAAAGATTCAATCTTCAAATTTTCCCTCAAAATTTTCTCTCTCACTTTCCACAACTTTCCAAGAAAACCCCACATAACACTCATCCATTTCCAAGAAAATTTTCATTTACTGCCAAGACTCTAACTTTATGCTCTGTTGCAGCTTCTGAATCATTGTCTTGTGGTGGCTGGGATGACCCAAGTTTCATTGGTGATCCAATTAGCCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTGCACGTGATGCCGACAAAGTTTTCTTGGCTGCAATTGATAAGTTCGATGCAATGATCTCCAGAGGAAATGTATATGCACCTGATGGTATGAGAAATAACTATTCGTCCATACTGTAAATTTAGAGTCTTTACTAATCCATGGTTGCCTCTTTTTTTTTTTTTTTTTTTGTCTTTACATTTTAATAAGAGAAGTAGGAAGAAGTATTTTAGAATCCTGGGCTTATAATCATTCCAGCAATGACCGTTGTTTAACTGTTCTTCTTTCTCTCTTTTGCGGTGGAGCTACAAAATCTATCAACAATAAAGGAGCTCGCCCTGCCACTTCTTCGTCATCAGTTCCTAATGTTTTGATTAGGAACTAATGAAAGGAGAAAGTTGGTGTCATCTCTGGGCCAGTTGATGATGTATGAGCTTTTGATATTCTCTCGTCTCCTTTTGCTTTGCTAAAAGTTGAACTGGTAAAAGTGATGTGTCATCTTTGGCGAACTTAAAGTTAGATAAGAACAAATGAACTAGTAAGTGCGCGTGGAAAGCAAATATCATCCCCCTCTCCTCGCATTTATGCTGCTCATTGTTTTAATAATAATAGTAATGAGCTGGTCATTATATAGCTAGGCCTTAATGGATGAGTAGCATCAGCATCATTAAGATGGAGTTACTATTTCACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600778" ref_strand="+" ref_description="SGN-U600778 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gttttggtggattttcttagtggggttgatgtagagattggtaatttgaagaagggtgttaggaaaggaattgagaataatcaaattactgtggaagatttgggaagtttcgaaaagagtctggaatctataaatttttctgctctcaatgctagaaaggttatagaaggttgtattgaaagcttgtcaattgatggacaagatatagggggggaaatcagtcaaaaatcgagtaagaagaagaaggagccgggtaaatatggcttcgacttctttcagattgctgctggtctgtttcaagcaaagtcgggttcgaagtctactaaaatgaaagatcatggtgacactgagttaatggacagaaagatgaatggccctaagcaagggaatatcttgagttctactactaaagaaagacatttgaattttgatatggatctagacggccttagtggcacttcaaggcacagtttcaatgatgatgccattagacaagacagagtgggtgagacatttgggaaggctagcagaatgaatgtagtttctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="29678" stop="30827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29978" g_stop="30527" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U600778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29978" e_stop="30527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGTGGATTTTCTTAGTGGGGTTGATGTAGAGATTGGTAATTTGAAGAAGGGTGTTAGGAAAGGAATTGAGAATAATCAAATTACTGTGGAAGATTTGGGAAGTTTCGAAAAGAGTCTGGAATCTATAAATTTTTCTGCTCTCAATGCTAGAAAGGTTATAGAAGGTTGTATTGAAAGCTTGTCAATTGATGGACAAGATATAGGGGGGGAAATCAGTCAAAAATCGAGTAAGAAGAAGAAGGAGCCGGGTAAATATGGCTTCGACTTCTTTCAGATTGCTGCTGGTCTGTTTCAAGCAAAGTCGGGTTCGAAGTCTACTAAAATGAAAGATCATGGTGACACTGAGTTAATGGACAGAAAGATGAATGGCCCTAAGCAAGGGAATATCTTGAGTTCTACTACTAAAGAAAGACATTTGAATTTTGATATGGATCTAGACGGCCTTAGTGGCACTTCAAGGCACAGTTTCAATGATGATGCCATTAGACAAGACAGAGTGGGTGAGACATTTGGGAAGGCTAGCAGAATGAATGTAGTTTCTGATG</genome_strand>
        <mrna_strand>GTTTTGGTGGATTTTCTTAGTGGGGTTGATGTAGAGATTGGTAATTTGAAGAAGGGTGTTAGGAAAGGAATTGAGAATAATCAAATTACTGTGGAAGATTTGGGAAGTTTCGAAAAGAGTCTGGAATCTATAAATTTTTCTGCTCTCAATGCTAGAAAGGTTATAGAAGGTTGTATTGAAAGCTTGTCAATTGATGGACAAGATATAGGGGGGGAAATCAGTCAAAAATCGAGTAAGAAGAAGAAGGAGCCGGGTAAATATGGCTTCGACTTCTTTCAGATTGCTGCTGGTCTGTTTCAAGCAAAGTCGGGTTCGAAGTCTACTAAAATGAAAGATCATGGTGACACTGAGTTAATGGACAGAAAGATGAATGGCCCTAAGCAAGGGAATATCTTGAGTTCTACTACTAAAGAAAGACATTTGAATTTTGATATGGATCTAGACGGCCTTAGTGGCACTTCAAGGCACAGTTTCAATGATGATGCCATTAGACAAGACAGAGTGGGTGAGACATTTGGGAAGGCTAGCAGAATGAATGTAGTTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597850" ref_strand="+" ref_description="SGN-U597850 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157327949|emb|CAO16913.1| (e_value=9e-14) unnamed; ">
      <seq>gatggtttatctgattctattgattttggcgtcggtgtggagcaaagcggtactgaagcatcttcgttgcatgaaaaggacgtcgagaattttgaaggagtaaggagccattttggtggaaaagaaaatgatgaagacacctacagtcattttcttggagaagagatgagaaaccctgaaaaggaaccctccatgggtagagatgaggcctcaaatgaatgtgaatctggtcactctccatcttcaagaggttccattgatttgcaatttaataagtaccttactgaggcaaatattctagtacaagaagcaaaggactgtttaaagaggcaagacggcgacaagcatgctgagaatgcgttttacgagtctgctgtattgctctcaaaagctatagatatccgccccatgagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="30386" stop="31403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30686" g_stop="31103" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U597850" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30686" e_stop="31103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTTAGCTGATTCTATTGATTTTGGCGTCAGTATGGAGCAAAGCAATACTGAAGCATCTTCGTTGCATGAAAAGGACGTCGAGAATTTTGAAGGAGTAAGGAGCCATTTTGGTGGAAAAGAAAATGATGAAGACACCTACAGTCATTTTCTTGGAGAAGAGATGAGAAACCCTGAAAAGGAACCCTCCATGGGTAGAGATGAGGCCTCAAATGAATGTGAATCTGGTCACTCTCCATCTTCAGGAGGTTCCATTGATTTGCAATTTAATAAGTACCTTACTGAGGCAAATATTCTAGTACAAGAAGCAAAGGACTGTTTAAGGAGGCAAGACGGCGACAAGCATGCTGAGAATGCGTTTTACGAGTCTGCTGTATTGCTCTCAAAAGCTATAGATATCCGCCCCATGAGTTTAT</genome_strand>
        <mrna_strand>GATGGTTTATCTGATTCTATTGATTTTGGCGTCGGTGTGGAGCAAAGCGGTACTGAAGCATCTTCGTTGCATGAAAAGGACGTCGAGAATTTTGAAGGAGTAAGGAGCCATTTTGGTGGAAAAGAAAATGATGAAGACACCTACAGTCATTTTCTTGGAGAAGAGATGAGAAACCCTGAAAAGGAACCCTCCATGGGTAGAGATGAGGCCTCAAATGAATGTGAATCTGGTCACTCTCCATCTTCAAGAGGTTCCATTGATTTGCAATTTAATAAGTACCTTACTGAGGCAAATATTCTAGTACAAGAAGCAAAGGACTGTTTAAAGAGGCAAGACGGCGACAAGCATGCTGAGAATGCGTTTTACGAGTCTGCTGTATTGCTCTCAAAAGCTATAGATATCCGCCCCATGAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567350" ref_strand="+" ref_description="SGN-U567350 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157327950|emb|CAO16914.1| (e_value=3e-123) unnamed; (*ATH) AT5G53750.1 (e_value=1e-83)  Symbol: None | similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27460.1); similar to OSJNBb0017I01.11 [Oryza sativa (japonica cultivar-group)] (GB:XP_474370.1); contains InterPro domain CBS domain (InterPro:IPR000644) | chr5... ; ">
      <seq>cagcacatatctaacctatcaccaccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaggctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacatttagatccaaattctagcttgttggaagcgatagattacattcttgaaggcgctcagaatctggttataccaattcaaaattctaagagcaccccttcgaggaaaaagctttcgagtaaagcgtcatttttgactcccacaaatcataacggagttgaatactgttggctaacgcaggaagacattgtccggttccttctgaactccattggagtcttctctcccatgcctactttttcaattgaatcgctcaacatcataaatcacgatatgatgactgttagttatcatgatcctgcaatttcttctttggatgccataattcgggcgtatattgagcagagctcagttgcagttgttgatgaagacaaccgattgattggtgaaatctctcccttcactctagcctactgtgatgagaccgttgcagcagcaatcgcgacactttcagctggtgatctcatgacttacatcgactacggtggtcctccagaggacttgatcgagttggtcaagatgaggttacaagaaaagaaacttggggcaatggttgaactaatagatgaagagttttcactgtcttcatcatcatcttctgcttcaagctgttcatcagatgatgaatcaggctcaagcaaagttactgtgctaggacgatattcttcagcaagaagatccgaggcgattacttgttatccatggagttcattggtggctgtgatgatccaagctctagcacatcgcgctaattccatttgggtgatggatgaagatcacaatttgatcggagttgtaacatttaaaggaattctggaagttttcaggagtatcgctaatgcgaagcgtaaaccagaaagggagaatacatcaaagcaataatacacaattaaatgccacatatgttgagttaattttttcttaaatgtcatcatatttattgtgttctatttttatttttattttgaaaatgggactatgtttgcataaattttgcttaaatgaactgaagaactgaaacttcttggggatgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38216" stop="35468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37919" g_stop="37411" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36785" g_stop="35768" g_length="1018"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="1527" r_length="1018" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U567350" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37919" e_stop="37411"/>
          <exon e_start="36785" e_stop="35768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAGGTAATTATCAAGATTTTTTTTTTTATAGAATTAGAAATTATATTGGTGTTGTTCCTTTTGCAATTACATTTTTTGATTTCTATTTTGTTTCTGTTTTAATTTTTTTTTTTTTGAACAATTAGTTTTTAGAATGAATTGGTATTTTGAGGTACTGTGTAGGAATACTGCTAAAGGATTTGCTGAAAAGAGAAAAAAAAGCCCTTTTAGCCCTCAAAATCCTTTTTTCATCAGTTAACTTTGTATATTCTGATTTGATTTGATTTTAATCATAGATCTACTTTTTCAGCATCAAATTTTAATGCTCGCTTTTTGGCCTTTCTTGTTTAAGCTTTGTTGTTTATGTGCCACAACCTTTGGCACATGTATGAAATGGTTAATTTTGGTTGTGATGATATTCGTATTTGGCTAGTTTGAGATTAAAGTCATAGATCCCTGAAACTAGTAAGATGATTGATGGGAGTCAAAATGGTGAACACAACTAGTTGTGATAGATGAGATCAAAGTGAGATGTATTAATGTGATTTGAATAATATTGGGTGTTAATTTTAAAGCATTCTTCTTATATGATCTATTTGAAGATTGATTATTGGCAGGTTTCTCATGTGTGTTATCTTTGGTTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGG</genome_strand>
        <mrna_strand>CAGCACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594945" ref_strand="+" ref_description="SGN-U594945 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caaaatttggtatcaaagattcaaaactactgacatgcctcgatttgaaagtaaaaatgacgatcggagaagatcgtctccgtattcttacaaagatcggaagtcgcatcatcacgaggtcaatttttctcttaaaattttctgaccatatcataatttgattcaaattgctcataatttgcttgaataatttgatagaatcatcacaaaatctagtaatttgacctaacgaaagaagtgacgacaaatttctattgtactggtgatcttggacgtgaactaaatcaatttaatctgagaaagagtgctatatttttattttattccaagcaacagttagttggatgaagattacgacttgaagctccagtaggacaatttttttgtgttgtgtagagattaggtgggtacataactctagcaaaaccggtaacctgaatggaataagtgttggtggtttatggatatcaggttattgagttaccaaatttgtaggatgagaaatggttgtgtgcgaatggaatttttatgttacattttccacatggttatggctgaagagaaaatgcaaccccaaattgatagaaattctcatttctaagaacttcgagaatgaaaattaaaatgtattagccctgacaacgttggagtagaaagtattagccaagggtgttagagttaccttggagtagtaatcgaccttggtgtctatcatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="49759" stop="51077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50059" g_stop="50777" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U594945" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50059" e_stop="50777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTGGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAGGTCAATTTTTCTCTTAAAATTTTCTGACCATATCATAATTTGATTCAAATTGCTCATAATTTGCTTGAATAATTTGATAGAATCATCACAAAATCTAGTAATTTGACCTAACGAAAGAAGTGACGACAAATTTCTATTGTACTGGTGATCTTGGACGTGAACTAAATCAATTTAATCTGAGAAAGAGTGCTATATTTTTATTTTATTCCAAGCAACAGTTAGTTGGATGAAGATTACGACTTGAAGCTCCAGTAGGACAATTTTTTTGTGTTGTGTAGAGATTAGGTGGGTACATAACTCTAGCAAAACCGGTAACCTGAATGGAATAAGTGTTGGTGGTTTATGGATATCAGGTTATTGAGTTACCAAATTTGTAGGATGAGAAATGGTTGTGTGCGAATGGAATTTTTATGTTACA-TTGCCACATGGTTATGGCTGAAGAGAAAATGCAACCCCAAATTGATAGAAATTCTCATTTCTAAGAACTTCGAGAATGAAAATTAAAATGTATTAGCCCTGACAACGTTGGAGTAGAAAGTATTAGCCAAGGGTGTTAGAGTTACCTTGGAGTAGTAATCGACCTTGGTGTCTATCATGGGAG</genome_strand>
        <mrna_strand>CAAAATTTGGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAGGTCAATTTTTCTCTTAAAATTTTCTGACCATATCATAATTTGATTCAAATTGCTCATAATTTGCTTGAATAATTTGATAGAATCATCACAAAATCTAGTAATTTGACCTAACGAAAGAAGTGACGACAAATTTCTATTGTACTGGTGATCTTGGACGTGAACTAAATCAATTTAATCTGAGAAAGAGTGCTATATTTTTATTTTATTCCAAGCAACAGTTAGTTGGATGAAGATTACGACTTGAAGCTCCAGTAGGACAATTTTTTTGTGTTGTGTAGAGATTAGGTGGGTACATAACTCTAGCAAAACCGGTAACCTGAATGGAATAAGTGTTGGTGGTTTATGGATATCAGGTTATTGAGTTACCAAATTTGTAGGATGAGAAATGGTTGTGTGCGAATGGAATTTTTATGTTACATTTTCCACATGGTTATGGCTGAAGAGAAAATGCAACCCCAAATTGATAGAAATTCTCATTTCTAAGAACTTCGAGAATGAAAATTAAAATGTATTAGCCCTGACAACGTTGGAGTAGAAAGTATTAGCCAAGGGTGTTAGAGTTACCTTGGAGTAGTAATCGACCTTGGTGTCTATCATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570289" ref_strand="+" ref_description="SGN-U570289 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157327952|emb|CAO16916.1| (e_value=5e-22) unnamed; (*ATH) AT4G36690.1 (e_value=5e-16) | Symbol: ATU2AF65A | U2 snRNP auxiliary factor large subunit, putative, similar to U2 snRNP auxiliary factor, large subunit (Nicotiana plumbaginifolia) GI:3850823 | chr4:17294019-17297725 REVERSE | Aliases: AP22.29, AP22_29, ATU2AF65A; (*SWP) sp|Q24562|U2AF2_DROME (e_value=2e-11) Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50; ">
      <seq>tggtatcaaagattcaaaactactgacatgcctcgatttgaaagtaaaaatgacgatcggagaagatcgtctccgtattcttacaaagatcggaagtcgcatcatcacgagagccagtctaatggatcgcagcactttagagtgaaggctaattattctggagatcaataccgtcacggtcaccgtcagcgtgaggactacaaggataaaagcaccaggagccacagaagaaatgacgacaatgaggattacagccgttccaggaaccataaatttgacaggcgccaagatcgtggaggtagatataagggtgaaacatgtggatcccgttctaggtcaaaggatcggtctcatgaagaagctagatcaagatcaagttctcctttacccccaaagagcagtgggcaggtgaaatctgaacaggagtgtgtattagctcaggcaaggctgcacatagctatgcagaaatggcttttgaagctagtggtatgactattcctggtacagagatagggcctgttgtgactgctgaaattccaaccaaggtgattacccctcaagaattatttgatgacgtagagtatgaagaaattttggaagacatgaagaaggaggccaaaaatttggtgacttgattgatgttgttattcctcggccagaacctgatcaaaaaatggtgatggttttgggaaggtatttctcgagtactctgacactatcgattgcacgaaagcaaaggcagcacttggtggcaggaaatttggagggaatactgctgttgccattttttatcctgaagacaaatgctacaagaaggattatgcctcttaattttctgaatatcttccatgtttatagtcttgtatagttttagtgcttgcaatcggccatttagctgcggtcaaggccgttcgataattatttttcttccatcacaattgcaacgctaacccagccatatggtgggtggtttgagctgcttgatatagtctctctattaggagaagtttttcatgtttcaaactattgtaatgaccagattttggatatatctatataatgctcaatattactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="49766" stop="56737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50066" g_stop="50176" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50177" i_stop="51973" i_length="1797">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51974" g_stop="52143" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="281" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="53188" i_length="1045">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53189" g_stop="53305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="398" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53306" i_stop="54142" i_length="837">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54143" g_stop="54209" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="465" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54541" g_stop="54620" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="545" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54621" i_stop="54700" i_length="80">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54701" g_stop="54781" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="626" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55389" g_stop="55455" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="693" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56048" g_stop="56437" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="1083" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U570289" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1083</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50066" e_stop="50176"/>
          <exon e_start="51974" e_stop="52143"/>
          <exon e_start="53189" e_stop="53305"/>
          <exon e_start="54143" e_stop="54209"/>
          <exon e_start="54541" e_stop="54620"/>
          <exon e_start="54701" e_stop="54781"/>
          <exon e_start="55389" e_stop="55455"/>
          <exon e_start="56048" e_stop="56437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAGGTCAATTTTTCTCTTAAAATTTTCTGACCATATCATAATTTGATTCAAATTGCTCATAATTTGCTTGAATAATTTGATAGAATCATCACAAAATCTAGTAATTTGACCTAACGAAAGAAGTGACGACAAATTTCTATTGTACTGGTGATCTTGGACGTGAACTAAATCAATTTAATCTGAGAAAGAGTGCTATATTTTTATTTTATTCCAAGCAACAGTTAGTTGGATGAAGATTACGACTTGAAGCTCCAGTAGGACAATTTTTTTGTGTTGTGTAGAGATTAGGTGGGTACATAACTCTAGCAAAACCGGTAACCTGAATGGAATAAGTGTTGGTGGTTTATGGATATCAGGTTATTGAGTTACCAAATTTGTAGGATGAGAAATGGTTGTGTGCGAATGGAATTTTTATGTTACATTGCCACATGGTTATGGCTGAAGAGAAAATGCAACCCCAAATTGATAGAAATTCTCATTTCTAAGAACTTCGAGAATGAAAATTAAAATGTATTAGCCCTGACAACGTTGGAGTAGAAAGTATTAGCCAAGGGTGTTAGAGTTACCTTGGAGTAGTAATCGACCTTGGTGTCTATCATGGGAGAGTAATGTTGACAAAAAGAAGTAGGTGGTTTATTCCAATACTTCTTAAGTTTTGGTGGAAAAAGAGCTGCCCGGTATATGTGCTAGTGAGAAATTGAAGGTACTCGGTGGATTAGTTGAGCTACAGGTATGTTGACTAGTGCATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAAGCTAAGGCAAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTATGTTACTCTTTTTTCCTTTAATCTCCTTCCAAGATTTTCCTCAAGTTCTCCACATAATATCTAATTTATAACTCTATTTTTTAGATATTTCAATTACTTTTAGGCGAATCCCGCACCTGGATCCATATTCCCAAATCTTAAAAATTAGATCATGAAGGATCGGACCTCTAGATTCGCACCCGCATCGGACACCCGCACCTGCAGTGGCAGAGTCGGGATTTTCAATAAGGGGGTTCAAAATTCATAGAAATAGACTCGGAATAGCCGAAGAGGGTTCAACATCTACTATATATACATAAAATATTATTTTAATCATGTATAAATATTATAATTTTCCGTCGAAGGGGGTTGTACCAAGGTGGATCCGCCACTGTGCACCTGAGTCCGAGCAACTTAGGTTGGACATATAATGGAACTTTAGTATTTGATGTTTAATAATTAAAATCTGCATGTTGTATTCATGCAATTCGATTTAATTTCAAGCACTCTTACTTAAAATAACCTGTCTCTTTTTTGTTTCCTACATTGTCAACTCCATAGAAGAAGCTTTTGATTGGGAATTTTGATCAGTTAGGCCAATTTTAGTTTGTATGTCATCTCCTGAACTCGTGAGCATATATTTCTTTGCTTGCTGCTATGGCCTAATTTCAGAATATCGTCTAATTGAGCTTCTCCAGAGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAGGTCATTTTAGGAAAAGTGTTTGTATGCATAAGCTTTTAGATCTTTCCATTTGTTATGATGGTTCTTTTGTGGGGTAGGGGGTGAGTCTATTTTGAATTGATAGGTCATACTTCCCTCATGGTTTATTATGTTCTGTCTAATTTCCAAATGTTATAGCTACATTCAATTTGAAGAAATAAATAGTTAGAGGATAGTTAATATATAGGATTTGTTAACACAAACAGTTCCATGAGGAAAATCAAGGCACTCGGCTCTCAGCTGGAAGTCTTTGTACAGTTGTAATTTTGGCCAACATAAGACAATTCTTGCTGTTTCAACTATAAGAAGAATATTTCTTTGATTGGTTTCCTTTATTTTATACATTTTTTTTTGATAAGTAAAGCTTTCTATCAATGGGCAACATTAGCACTAAGGCTGTTCTGGACACTACAGTAGGATGTCCCAAGTACAAAATTTGTTCAACTTTGTAATAAACTAAACGGAATCTGCCATAGAGTGCTCTTCATATGCATATTATACATTCACTGAAAAGCTAACTAACTAAGCATCTCTATTTGAGGACAAAGAGTGCAGTTCTTCTGTTGAAACATCTTTGATTCCTTTCTTTCTGCACCACCTAACAGACAGATGCAGGAATGGTTCTCCATAATCTGCTCAGCGCCCAAGGAGTTCCTTGACATTCTTTGGCATCACATATCTTAAACCCAAAATATGTTCAAAATAAGGTTCCACAACTGGATAGGTGGGAAAAGTGCAAATAGAAAGAAAAAAAGACGATATTTATCATTTCATATTTATCTTTGTACTTCTCACAGCAACAGATTCTTGGCAGGTTATTAGATATTAAAGAATTAAAGAAAAACACACAGCCAAATTATACATATAAACCTTTTGTTTCATGATGGATTATATATATAGCTTACATGATTGTTTTACGAGTACAAGTAACACACTGGATGAATGAATATTTTTTTTTGTGAGAATGGTAACATTAAAATGATTATCATTTTTATTTGGCCATTTTGTTATTATTGTGATTTTATAGGCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAGAGGTTTCCTAATAATTTTTTTAACAATATGAATTTCCGAATTGATAACTCTTTATTCTTTAATACGCTTTACTCCCAGGTTTTCTTTTCACAAATTTTGGCCTGCAGTAATTTAGTCCGGATTTCATCTCCTAAACTCTTTTTTTCTATGAAATATTGCTCTTGGAATTTCCTCTAGGTCTTGCATTACCTCTTTGTTTGTGTTTTAGTAGAATGAATTTATAGTGGTTTCTTTGTCGTACATCTATTTCTGTTTGGCATCTGAAGCAATCATTTATAGTAACAAATCAATTTTTCTAAACTGAACTCTTCTGATTGTTTACTTTTGTGTTCAAACATCATCCGGGTCTATACTGTACATTGCCAGATTACTATGTTTTTGATGTTCATGTATGAGTGATGACCTTCCTGTGAGATGAAATGTGGAAGTACATTATGCGACCCAAGAAATGTGTGTCTTCAGCCAATTTGGATAGTCTGAGATGTTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAGGTTTGAATACTTTCTACAGTATTAAATTATTATTCTAAATACTGCCTTTGTCCCAAAAGTTTCGACATTTTTCACTTTTTGAGCTTTGAGCTAAAGTGAACTTTAACTAACATTTTATAATATGTTCACGTGCAGTTTGATATGTGCGAATTGTAATTGTTGTACTTATTGTGAAACTTCTAAACTCTAATTTTAATTCAATATAATAAATAAATTGATCTGATCTAACTCCTAAAATTGGTCAAACTGACCTCAATAAGCTAAAAGTGATTGGGACACTGTGCATTTTCCCTTAATTTTGAATGCTGAAGATTACATTGCTTGCTTGCAGAAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGATTTATAGTATGATGGTTGATTGCTCACCTTCATAATTGGATGAACCAATGATTTAAGACTTAAATGAAGAAGAGTTTAAGGGAAAAAGGTAACTGGATTTATAATAGTTTTCAGTTCTATGGGCGAAACATTTTTGAATTGATGATAAAAGATTGGGTACCTTTGCGGAACAATATACTTTCAACTGTTCTTGCTTGAACTTTCAGCCACGAATTTTGTCTCGCAAGCTGCTGCTCTATAATGTCGATTTCACTCATAGGACTACCCCTCATAAGTCTCTGCTACTTTCATTGACGTGTTCCCTATTTATGTGGATTCTCGTCTTTCAGTTTATTAATATTTCCTGATATATTGTACATCCATTTCTATTTCGGGATTTCCTTTTATATGTGCTACTCAATCTGTACAATTAAGTATTTGATAAGTCAGTATTGGATTTCCTTTGGCTGAATTATAGGTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAGGTAATAATGTTGTCACTTTTACGTGTCCGAGCTTTAAAAATTAATTCGATTTTGTTATGCTGAGCAATTGTTGTATCTGTGCTGTGTGTTCTGCAAATATATTTTATTGTTTAAATAATTTGCTGCCATTGAAAGTCCATGGTCACTTCTTGGTTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAA</genome_strand>
        <mrna_strand>TGGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG...........................................................................................................................................................................................................................................................................................................................................AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAG................................................................................GTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597138" ref_strand="+" ref_description="SGN-U597138 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcatcatcatactaaaggtaaaaggaagtacttaaaaattatgtcccccatgtagcaattccatactttttatctactatgccaatttaaagttgctaaacatatcctggaaccatgtagaatggtgttggatatattatggaacaatggttttagatactaagtcgcttggactatctactttaggtgccgcacccgtgtcgacacaacatgggtgattgggtgtgggtgtgagattcatgtccgatttggccaaccgattttgagtattttgaccaaaatcgatgggaatttggatagttttaatgatttctataatcaatacaaaagctaaagcaaaattgaagaaaatggaataccttttatatagaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="50618" stop="51594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50918" g_stop="51294" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U597138" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50918" e_stop="51294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAAGCTAAGGCAAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTC</genome_strand>
        <mrna_strand>GCATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAAGCTAAAGCAAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570288" ref_strand="+" ref_description="SGN-U570288 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gtcaatctttgggaacagtgtaccaactgataattctgaatcaaattttgtttatttgctcagtaaagagtcttgtgcttttagaaacaaatgtcttgcatgctcacttcgtcagtctcaaaaagtagaatttgtaaaccgccttgagcttaacaatgttcagcagccaagtaaacttttgaatgatgattaacttcttcccatatactgattatatcttccatatgttatttcgatgaaggggtgtgtggtttctggaaccacacttgtggttctgtatttaacctctccctggtaatggactgtgctcttttataacttttttccaatcatgtttaacagcagtgggcaggtgaaatctgaacaggagtgtgtattagctcaggcaaggctgcacatagctatgcagaaatggcttttgaagctagtggtatgactattcctggtacagagatagggcctgttgtgactgctgaaattccaaccaaggtcttatgcttaaccgataatgacaaggtaaaatattgtagtaatgctaacgagttagtcattctctggatgttttgaaggtgattacccctcaagaattatttgatgacgtagagtatgaagaaattttggaagacatgaagaaggaggccaaaaatttggtaactgcagcttctcattcattaaaatatcttctgttatctcttttttgttttatgatatgttcttttgtttccatctgtttctcatgttcacataggaattggttctattaaaaaagatgattgaaatgagacactttcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="53501" stop="55232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53801" g_stop="54209" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54541" g_stop="54932" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="798" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U570288" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53801" e_stop="54209"/>
          <exon e_start="54541" e_stop="54932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAGGTTTGAATACTTTCTACAGTATTAAATTATTATTCTAAATACTGCCTTTGTCCCAAAAGTTTCGACATTTTTCACTTTTTGAGCTTTGAGCTAAAGTGAACTTTAACTAACATTTTATAATATGTTCACGTGCAGTTTGATATGTGCGAATTGTAATTGTTGTACTTATTGTGAAACTTCTAAACTCTAATTTTAATTCAATATAATAAATAAATTGATCTGATCTAACTCCTAAAATTGGTCAAACTGACCTCAATAAGCTAAAAGTGATTGGGACACTGTGCATTTTCCCTTAATTTTGAATGCTGAAGATTACATTGCTTGCTTGCAGAAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGAT</genome_strand>
        <mrna_strand>GTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATGGACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG...........................................................................................................................................................................................................................................................................................................................................AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGGAATTGGTTCTATT-AAAAAAGATGATTG-AAATGAGACACTTTC-AATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594944" ref_strand="+" ref_description="SGN-U594944 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agtaatattgagcattatatagatatatccaaaatctggtcattacaatagtttgaaacatgaaaaacttctcctaatagagagactatatcaagcagctcaaaccacccaccatatggctgggttagcgttgcaattgtgatggaagaaaaataattatcgaacggccttgaccgcagctaaatggccgattgcaagcactaaaactatacaagactataaacatggaagatattcagaaaattaagaggcataatccttcttgtagcatttgtcttcaggataaaaaatggcaacagcagtattccctccaaatttcctgccaccaagtgctgcctttgctttcgtgcaatcgatagtgtcagagtactcgagaaatacctgcagtttgaaacacaaaaccatctgaaagaaggagaggggggggattcaagatcgaaaaagactactataattgttgcgtattatcctgactgttgaaatatggctatatataacacccatgcagggttgaagtgaactatcaagatgtacattactggcaaaatgatcaattgattgtgatgctacattctgtgtgcattttttatgaggattaaataatgagtcgtttcaattctctgtgcagcagattgaggattaatacatatgagagacagatgaggaaagaaaaaaataaaaatgcttatgcatcacttcttcattcaaaaattgcctaaacagtacattctaagatgatctcaaaatctagagtcaaacagtaaaaaggaaaataagcgataacttgtagtaacagagcactttattttgccaatgtcaccaaggaagtgaccatggacttttcatggcagcaaattatttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="56728" stop="55264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56428" g_stop="55564" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U594944" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56428" e_stop="55564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATATTGAGCATTATATAGATATATCCAAAATCTGGTCATTACAATAGTTTGAAACATGAAAAACTTCTCCTAATAGAGAGACTATATCAAGCAGCTCAAACCACCCACCATATGGCTGGGTTAGCGTTGCAATTGTGATGGAAGAAAAATAATTATCGAACGGCCTTGACCGCAGCTAAATGGCCGATTGCAAGCACTAAAACTATACAAGACTATAAACATGGAAGATATTCAGAAAATTAAGAGGCATAATCCTTCTTGTAGCATTTGTCTTCAGGATAAAAAATGGCAACAGCAGTATTCCCTCCAAATTTCCTGCCACCAAGTGCTGCCTTTGCTTTCGTGCAATCGATAGTGTCAGAGTACTCGAGAAATACCTGCAGTTTGAAACACAAAACCATCTGAAAGAAGGAGAGGGGGGGGATTCAAGATCGAAAAAGACTACTATAATTGTTGCGTATTATCCTGACTGTTGAAATATGGCTATATATAACACCCATGCAGGGTTGAAGTGAACTATCAAGATGTACATTACTGGCAAAATGATCAATTGATTGTGATGCTACATTCTGTGTGCATTTTTTATGAGGATTAAATAATGAGTCGTTTCAATTCTCTGTGCAGCAGATTGAGGATTAATACATATGAGAGACAGATGAGGAAAGAAAAAAATAAAAATGCTTATGCATCACTTCTTCATTCAAAAATTGCCTAAACAGTACATTCTAAGATGATCTCAAAATCTAGAGTCAAACAGTAAAAAGGAAAATAAGCGATAACTTGTAGTAACAGAGCACTTTATTTTGCCAATGTCAACCAAGAAGTGACCATGGACTTTCAATGGCAGCAAATTATTTAAAC</genome_strand>
        <mrna_strand>AGTAATATTGAGCATTATATAGATATATCCAAAATCTGGTCATTACAATAGTTTGAAACATGAAAAACTTCTCCTAATAGAGAGACTATATCAAGCAGCTCAAACCACCCACCATATGGCTGGGTTAGCGTTGCAATTGTGATGGAAGAAAAATAATTATCGAACGGCCTTGACCGCAGCTAAATGGCCGATTGCAAGCACTAAAACTATACAAGACTATAAACATGGAAGATATTCAGAAAATTAAGAGGCATAATCCTTCTTGTAGCATTTGTCTTCAGGATAAAAAATGGCAACAGCAGTATTCCCTCCAAATTTCCTGCCACCAAGTGCTGCCTTTGCTTTCGTGCAATCGATAGTGTCAGAGTACTCGAGAAATACCTGCAGTTTGAAACACAAAACCATCTGAAAGAAGGAGAGGGGGGGGATTCAAGATCGAAAAAGACTACTATAATTGTTGCGTATTATCCTGACTGTTGAAATATGGCTATATATAACACCCATGCAGGGTTGAAGTGAACTATCAAGATGTACATTACTGGCAAAATGATCAATTGATTGTGATGCTACATTCTGTGTGCATTTTTTATGAGGATTAAATAATGAGTCGTTTCAATTCTCTGTGCAGCAGATTGAGGATTAATACATATGAGAGACAGATGAGGAAAGAAAAAAATAAAAATGCTTATGCATCACTTCTTCATTCAAAAATTGCCTAAACAGTACATTCTAAGATGATCTCAAAATCTAGAGTCAAACAGTAAAAAGGAAAATAAGCGATAACTTGTAGTAACAGAGCACTTTATTTTGCCAATGTCACCAAGGAAGTGACCATGGACTTTTCATGGCAGCAAATTATTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564627" ref_strand="+" ref_description="SGN-U564627 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|643469|gb|AAA61967.1| (e_value=9e-114) unknown; (*ATH) AT4G27450.1 (e_value=4e-90) | Symbol: None | expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 | chr4:13727493-13728892 REVERSE | Aliases: F27G19.50, F27G19_50; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=2e-22) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1; ">
      <seq>agtttatcaccttgtttgtgctttctcactaatttactttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagttgatgtctactccaaggtgaatagcatgccaagagttggaagttctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactttaactaactacaatataaagaagaaaagaaaaaagtactttatctttgtcttcattcctgttgttattttctgtttccctattgtatttcaataagcctcctgcatcttccataagggcctcagctttgtaaattttcacatgaggttccaacatgagaagattgttgagtttccctttttgtttgttttcttagttcctaagtggtgaaaattagtaatgagcaaccacaccattctataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57092" stop="59591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57392" g_stop="57672" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="522" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="643" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58835" g_stop="59290" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="1099" r_length="456" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U564627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1099</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57392" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCTAAGTGTTGAAAATTAGTAATGAGCAATTAGAACATTCTATATA</genome_strand>
        <mrna_strand>AGTTTATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCTAAGTGGTGAAAATTAGTAATGAGCAACCACACCATTCTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594680" ref_strand="+" ref_description="SGN-U594680 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|643469|gb|AAA61967.1| (e_value=1e-36) unknown; (*ATH) AT4G27450.1 (e_value=5e-34) | Symbol: None | expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 | chr4:13727493-13728892 REVERSE | Aliases: F27G19.50, F27G19_50; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=4e-16) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1; ">
      <seq>ggaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttgtgagttcttttctagttctaaagtttatccccatcaatatgcaatttttaataatggtagttttcaagcctgttagtgctgagcacctcaactattcattagagtacatgttgcctcttaccaacacagctatgtcataactgcctactaaggcttaggcagatagaaagaaatgattttagcagattctatctctttcttgcagttacaatcaccaaaagaaagtgcattgtctctataaatgtatataaacaacattttcttactctaattggagatggaatgatgggtgatatcaatcttgaaagggaacatatacaatagatcatttattatattctattaagacataatttcctttttttctctttcattgaatgtcatgaaattgtgtctatgtttaggggtgctgatgaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57268" stop="58877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57567" g_stop="57672" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58577" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="769" r_length="663" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U594680" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57567" e_stop="57672"/>
          <exon e_start="57918" e_stop="58577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGAT-GGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATG-AATTGTGTCTATGTATA-GGGTGCTGATGAAACTG</genome_strand>
        <mrna_strand>GGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAAATTGTGTCTATGTTTAGGGGTGCTGATGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564628" ref_strand="+" ref_description="SGN-U564628 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|643469|gb|AAA61967.1| (e_value=7e-44) unknown; (*ATH) AT4G27450.1 (e_value=3e-18) | Symbol: None | expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 | chr4:13727493-13728892 REVERSE | Aliases: F27G19.50, F27G19_50; ">
      <seq>cgacttgagggtagctatggctttgtgatctatgatcataaggctgggtgctgacgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgcggatcatatcaaaggaagctggctcaaatcatttgctcccttcccaaccggctgcatgtaccactagcgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagctgatgtctactccaaggtgaatagcatgccaagacttcgaaggtctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactataactaactacaatataaagaagaaaagaaaaaacttacaaaggaggacgcagagaaagctgagcaggtcatctcatctttgtcaccagatgagttggaaagaatggtgagatgggcagcaaggattcaaacaggaatacaagttctcaagattaccaaagattttgtcatggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57794" stop="59931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58093" g_stop="58138" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58139" i_stop="58561" i_length="423">
            <donor d_prob="0.772" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="167" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.866" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59081" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="415" r_length="248" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59082" i_stop="59488" i_length="407">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59489" g_stop="59631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="558" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U564628" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58093" e_stop="58138"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59081"/>
          <exon e_start="59489" e_stop="59631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCAC-AGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCTAAGTGTTGAAAATTAGTAATGAGCAATTAGAACATTCTATATAAGTTATTTGTAATGACAATCAAGATGCAATGACCATTTAGTTATTTTCTTCACAAAATTTGTGCTAAACCCCTTTAAGTTTATGTAAATATTGAGCCCCATCCTCATCCCTAAAATAATTCATTTCAACCACTATGAAATTATTCAGAGATGGATGGTTGGATACTCACTAACATGAGTGAACAATTTGAATTTGAAGCTTACAAAGGAGGACGCAGAGAAAGCTGAGCAGGTCATCTCATCTTTGTCACCAGATGAGTTGGAAAGAATGGTGAGATGGGCAGCAAGGATTCAAACAGGAATACAAGTTCTCAAGATTACCAAAGATTTTGTCATGGCAAA</genome_strand>
        <mrna_strand>CGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGACGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGCGGATCATATCAAAGGAAGCTGGCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GCTGCATGTACCACTAGCGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGCTGATGTCTACTCCAAGGTGAATAGCATGCCAAGACTTCGAAGGTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTATAACTAACTACAATATAAAGAAGAAAAGAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................CTTACAAAGGAGGACGCAGAGAAAGCTGAGCAGGTCATCTCATCTTTGTCACCAGATGAGTTGGAAAGAATGGTGAGATGGGCAGCAAGGATTCAAACAGGAATACAAGTTCTCAAGATTACCAAAGATTTTGTCATGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564626" ref_strand="+" ref_description="SGN-U564626 Tomato 200607#2 [2 ESTs aligned] (*ATH) AT5G21990.1 (e_value=6e-11) | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515: TPR Domain | chr5:7273172-7276566 FORWARD | Aliases: None; ">
      <seq>atatccagcactgtttagtgctgttctgtatagaattttattaacttataagaaaaaatgaatgaattttcctaacatgacaagaaaatataaaagaacagaaaaagctcagatgcagccaaacaggtgaaggaagactgcaaaaatgggcacaaaaagtgccaagctcatgccaggatttgccatgacaaaatctttggtaatcttgagaacttgtattcctgtttgaatccttgctgcccatctcaccattctttccaactcatctggtgacaaagatgagatgacctgctcagctttctctgcgtcctcctttgtaagcttcaaattcaaattgttcactcatgttagtgagtatccgaccatccatctctgaataatttcatagtggttgaaatgaattattttnagggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="60109" stop="59093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59809" g_stop="59393" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U564626" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59809" e_stop="59393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCAGCACTGTTTAGTGCTGTTCTGTATAGAATTTTATTAACTTATAAGAAAAAATGAATGAATTTTCCTAACATGACAAGAAAATATAAAAGAACAGAAAAAGCTCAGATGTAGCCAAACAGGTGAAGGAAGACTGCAAAAATGGGCACAAAAAGTGCCAAGCTCATGCCAGGATTTGCCATGACAAAATCTTTGGTAATCTTGAGAACTTGTATTCCTGTTTGAATCCTTGCTGCCCATCTCACCATTCTTTCCAACTCATCTGGTGACAAAGATGAGATGACCTGCTCAGCTTTCTCTGCGTCCTCCTTTGTAAGCTTCAAATTCAAATTGTTCACTCATGTTAGTGAGTATCCAACCATCCATCTCTGAATAATTTCATAGTGGTTGAAATGAATTATTTT-AGGGATGAG</genome_strand>
        <mrna_strand>ATATCCAGCACTGTTTAGTGCTGTTCTGTATAGAATTTTATTAACTTATAAGAAAAAATGAATGAATTTTCCTAACATGACAAGAAAATATAAAAGAACAGAAAAAGCTCAGATGCAGCCAAACAGGTGAAGGAAGACTGCAAAAATGGGCACAAAAAGTGCCAAGCTCATGCCAGGATTTGCCATGACAAAATCTTTGGTAATCTTGAGAACTTGTATTCCTGTTTGAATCCTTGCTGCCCATCTCACCATTCTTTCCAACTCATCTGGTGACAAAGATGAGATGACCTGCTCAGCTTTCTCTGCGTCCTCCTTTGTAAGCTTCAAATTCAAATTGTTCACTCATGTTAGTGAGTATCCGACCATCCATCTCTGAATAATTTCATAGTGGTTGAAATGAATTATTTTNAGGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567015" ref_strand="+" ref_description="SGN-U567015 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157327955|emb|CAO16919.1| (e_value=0) unnamed; (*ATH) AT4G04920.1 (e_value=0) | Symbol: None | expressed protein | chr4:2497929-2504798 FORWARD | Aliases: T1J1.2, T1J1_2; ">
      <seq>ggttgctttgaacagtgtcattgctgtactggatgcagatttccattccctcccttcaactcagcatagacagcagtatggaccgagtctagacaggataaaatgcaggcttctagaaggtacaaatgctcaagaagtccgggcaatggtgcttgacatgcaagcaagattgttgctagatatgcttggcaagggaatcgaatcagctttaacaaacccatcagcattggttccggagccatggcaagcttctagcgagacactgtttggtattgatcctgaggcgatggctgttgaaccatcacttgtgccaagtatccaggcatatgtagatgcgatactggatctggcgtctcatttcatcacgcgcttacggcgctatgcaagtttctgccgtacattggctagtcatgctgttactgcaagtacaggtgggagtaggagtatggtgactagtcctactcaaagtgcttcatctcctgccacttcccagggtgctcagggtggtactgcaagttctgctgggagcactcatatgcaagcttgggtacaaagagctatagcaaaaattagcagtacagccgacagtgttcctagttcagccccaaaccccatcactggtccttctacatttatgccgataagtatcaacactggcactttccctggaactccggctgttaggcttataggggactgccattttcttcatcggctatgtcaacttctgcatttctgttttttcttccgtggaacacaattaccgcgttttatgggggctgctcaaaggaatgctgattcttcaatgcaaaaacctcagtccggtattccaggcaaaacagaagattccaactctggtgcaaaaccaacgctaggcggtcaggttggaacaggagcaaaggggtctgaagaaggtccatctaaacggtctaggattggttctggaaatgctggtcaaggatacacatatgaggaggtgaaggtcctttttcttattctgatggatctttgtcgccggactgctggtttggtacatccgctgccagtttctcaggttgggagcaacaacattcaggtccgccttcattatattgatgggaactatactgtattgccggaagtagttgaagcttccctgggacctcacatgcagaatatgcctaggcctagaggtgcagatgctgctgggctgctattgcgtgagttagaactccatccacctgctgaggaatggcacaggagaaatatgtttggtggaccttggtctgatccagaagatgtggatgacaattctaagcttagcccatcaagggatttgacacagtacagctcattagaaaactgtgatgtatattatggagctcatggtttgtggcctaggaaacgcaggatgtctgaaagagatgctgcttttgggctgaatactgcagtggggctgggtgcatatcttggtataatgggatctcgacgagatgttgtgacagctgtttggaagactgggcttgaaggggtttggtacaagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="70594" stop="65503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70295" g_stop="70211" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70210" i_stop="69485" i_length="726">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69484" g_stop="69248" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="322" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69247" i_stop="69091" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69090" g_stop="68919" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="494" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68918" i_stop="68813" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68812" g_stop="68331" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="976" r_length="482" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68330" i_stop="66631" i_length="1700">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66630" g_stop="66454" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="1153" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66453" i_stop="66172" i_length="282">
            <donor d_prob="0.555" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66171" g_stop="65803" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1154" r_stop="1522" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U567015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1522</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70295" e_stop="70211"/>
          <exon e_start="69484" e_stop="69248"/>
          <exon e_start="69090" e_stop="68919"/>
          <exon e_start="68812" e_stop="68331"/>
          <exon e_start="66630" e_stop="66454"/>
          <exon e_start="66171" e_stop="65803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTTTGAACAGTGTCATTGCTGTACTGGATGCAGATTTCCATTCCCTCCCTTCAACTCAGCATAGACAGCAGTATGGACCGGTGTGTTTCTTTTATTTAATTCCAACTTCAAGCCTATCATTTGCATATGAGGAAATTATCATCCTGGTGTATCATTGAAGTACATGTTGTAAATACTGACCAGTACAGTTTTAGTACTGACTTTTGAGGAATAGACAAAGTTACCAATTTCAAAAAAAATAAAATATATCATCCTGGTGTATCAAATTGGATGGATACTTGTGACAATATAGCAATTACGTGAAGATATCGAATGTTGCATTTCACATTCCGCTCATCTTTTTTTTGCTTTGCTTTCTCTATATGAGTTTTGCTCTTGCATGATATCAGTCTGACTTTGGAGAAGATAATGGAGCAGTGTATGGATTACACTTCTAATTATTTTCCATCTTGAGAGCATGAGGATCAAATTTGCTTAATTTAACATATGAATTACAACACTTCCTCTATTACGATAGATGGCAATGTAACTAATTTTTGTTTCTCTCGATCATATACTAGTCTAATAGTGTGTTGTGTGGAAGATTGTGTCTTTGTGTTTGTGTCATGTATGTACTTATCAGATATTGGATCATGTTTTTCTATCATTCAATCTGTGCATGCATACATACATACAAGTAGTTCTTGAATTTTAAAACTGTGTGTTTATTTCATGATTTCATCAAAGTTCATTCTCAGGAATGTATTATGAGTTCTCCTGTTCTTGGATATCGTTGAATGTTGATATATCTCATCCGTATAATGCAGAGTCTAGACAGGATAAAATGCAGGCTTCTAGAAGGTACAAATGCTCAAGAAGTCCGGGCAATGGTGCTTGACATGCAAGCAAGATTGTTGCTAGATATGCTTGGCAAGGGAATCGAATCAGCTTTAACAAACCCATCAGCATTGGTTCCGGAGCCATGGCAAGCTTCTAGCGAGACACTGTTTGGTATTGATCCTGAGGCGATGGCTGTTGAACCATCACTTGTGCCAAGTATCCAGGTATTTTCTTACACTTGTCCGATGTACCTCCACCCACTGGTTTCCCGCTATTGGATAGATGTCTTGGTGATCATCACCTTTCTGTATGTGTAACCAAGGACGTCTATTTCTGCGTTCAGTGTTTGAGTTTCTCAAGTATTGGGATGATTTAATTCAGGCATATGTAGATGCGATACTGGATCTGGCGTCTCATTTCATCACGCGCTTACGGCGCTATGCAAGTTTCTGCCGTACATTGGCTAGTCATGCTGTTACTGCAGGTACAGGTGGGAGTAGGAGTATGGTGACTAGTCCTACTCAAAGTGCTTCATCTCCTGCCACTTCCCAGGGTTAGTTTGTTTGCTTCTCTGTTATGTGCTGTTAAGGTATATCCCTTCCTGGATCCAAGAATCCACATCTCTTCTCTGAGCTAAACCAGGGGCCTCTTCTTTTCAGGTGCTCAGGGTGGTACTGCAAGTTCTGCTGGGAGCACTCAGATGCAAGCTTGGGTACAAGGAGCTATAGCAAAAATTAGCAGTACAGCCGACAGTGTTCCTAGTTCAGCCCCAAACCCCATCACTGGTCCTTCTACATTTATGCCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAGGTAAACTTTATAAACTATTAATTTACCAGTTGCTCTTGTTTCTCCTTGAACTGTTCTTTGTATTGGATTGCTATACTTTTATCACTCCATTTTAGAATAATTCTCAATTTCCATGTAGCACCAAATTGGTGGTTTCAGAATAGCCGGAGACTCCTAGTGGTATCCAAGTCTCAGAATTTGGTGCATTATGAGGGGCAGCAGACTGATGATTTAAGATATATTCCTCACTGTTGAAAACAAAAGAATTGCCTAGGTTTCTATTTGAAGTCACCCAAAAGTATGGCAAAAACACCCTTCTTTCTCAGCTGCCTGGATACTTCCAGAAGCTATTTTTTTTTCTTTGGCTGCATGGGTGAGGCCAACTACATGGGTCAGCTACGTGGCCTACTCAGATTTTTCCCTTTGCTCTTTTAACCAATTTTTCTTCAACTTTTGGTCTTCATGTCCAATTTTATCAAGTATTGGAAGCTATTCTAATCCTTATTCTCTTCAAAGGCTCCCAAAAATGGAATTATGTCATCCAAACCATTATTAGTCCATTAATCTTGCAAATGGGAATGAATTTATCATTAAAAGGTAGCATAAGTTGGCAAAGATGCCAACTTATCGCTGTCCAATGAACTGCACCAAGGAGTGGAAGAAACTTCCAATCAATGAAAGAGCAGATTCAAACTTAAACACCATTATATGCTGTGTAATGAGATTGCGAAGTTCACTTTCAAATCAGATTGGGAAAATTCATGGGAAAGAAATTCTTGAAGTTGGTTGGTTACTTGTTATGAGACAGCCAGGCTGTCCAGATGGGAAAGTCTCTGTCAAACAGGATCTTTTATATTCTCTAAATGGATTCTTCCACTGTTCTATCGAGCTGGTCGGAAACTTATTCTTGTTATGATATAGCAAGCAGGCTGATTATTCAGGTGAGGAGGTCCATGTTATCTCTAAATGTATTATTCAGTCGTCCTGTCTGAGAGATAAATGGACAGTAATAAATAACCACTATGGTTCAGCAGCTGATACAAATTATCAGAATGAAAAATATTTGAGAAACTTTTAGTGATTTTATCAGTTCATGAAGAGGAAAGAGCTAGTTCTCAATATTGAGTTAAGAAGCCAAAAAGAACTGGCTAAGAATCTGAACAAGAAATCTTGAGCTATCTAAGTCATGAAAGCAACAACTATGGGCAAGCTAGAAAATGATGAGAGCTCAAGAATGAATTTAATTTTTTTTGTCCCTTTACTTTATCTCTTTCTCTGATTTTCGAATGGTTATGTAGTGAATGAGAATCTTTTTCAGTTTAGTTGATCACTCTGACAACTCAATTTTAATTGCTAATGTAAGTATCTTACTTTGAGAAGTTTTGAATCAACAAGCTCTTCCTTATAGTCTTGTACTGTTATCTAATAATTGATATTTAGGCATTTTTTTTCTAGATTGTTGGTTATTGTCGAGGAATTATGAAATGGCTCATCGGTATGCATACTTATTTTCGAAGTTGTTGATTAGTCAAGGCCATACGTTTTGTGGATGTAAAGTTTCATATTGATGAAAGGAAGCCCTTGTGAGAAAGTAAAAAAATAATTGTTTTAGAAGGTAATGAAGTAGTGAAACGTGGATTTGGATGGCTATTGATATCTGGAAAGATGGCAGTGTTTCATCCTGTGGATAGAATATTGATTAATTTGATATTATATTGCAGGTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAGGTAGTTCACTTGAAGCTCCTTCCTAACATTCATAAACCTCATATCGGGTCATCCTTTTTCAATTATGTGCACTACAAGAAAATAAGATGTGAAAGAAAAATGTTTGTCGGGTGGGGGGAGTTCAGCTGTTTATATTTGTTGAGCTCATTGGGCCACTTTTGGTACTTCAAATCTCCTTGACAGGAAAAAGAACAGCAAACAACTTGAAAAAGACAACTCATGTAGGGATGGGTAGAAATCCCCATAATCCTTAGACACTTATCTCATTCCCCTTTCTTGCAGAATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTAGGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTTCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCTCGACGAGATGTTGTGACAGCTGTTTGGAAGACTGGGCTTGAAGGGGTTTGGTACAAG</genome_strand>
        <mrna_strand>GGTTGCTTTGAACAGTGTCATTGCTGTACTGGATGCAGATTTCCATTCCCTCCCTTCAACTCAGCATAGACAGCAGTATGGACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTAGACAGGATAAAATGCAGGCTTCTAGAAGGTACAAATGCTCAAGAAGTCCGGGCAATGGTGCTTGACATGCAAGCAAGATTGTTGCTAGATATGCTTGGCAAGGGAATCGAATCAGCTTTAACAAACCCATCAGCATTGGTTCCGGAGCCATGGCAAGCTTCTAGCGAGACACTGTTTGGTATTGATCCTGAGGCGATGGCTGTTGAACCATCACTTGTGCCAAGTATCCAG.............................................................................................................................................................GCATATGTAGATGCGATACTGGATCTGGCGTCTCATTTCATCACGCGCTTACGGCGCTATGCAAGTTTCTGCCGTACATTGGCTAGTCATGCTGTTACTGCAAGTACAGGTGGGAGTAGGAGTATGGTGACTAGTCCTACTCAAAGTGCTTCATCTCCTGCCACTTCCCAGG..........................................................................................................GTGCTCAGGGTGGTACTGCAAGTTCTGCTGGGAGCACTCATATGCAAGCTTGGGTACAAAGAGCTATAGCAAAAATTAGCAGTACAGCCGACAGTGTTCCTAGTTCAGCCCCAAACCCCATCACTGGTCCTTCTACATTTATGCCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAG..........................................................................................................................................................................................................................................................................................AATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTAGGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTGCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCTCGACGAGATGTTGTGACAGCTGTTTGGAAGACTGGGCTTGAAGGGGTTTGGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602806" ref_strand="+" ref_description="SGN-U602806 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116617151|ref|YP_817526.1| (e_value=4e-12) hypothetical; (*ATH) ATCG00860.1 (e_value=5e-13) | Symbol: YCF2.1 | hypothetical protein | chrC:86474-93358 FORWARD | Aliases: YCF2.1; (*SWP) sp|Q9B1K6|YCF2_LOTJA (e_value=3e-13) Protein ycf2 OS=Lotus japonicus GN=ycf2-A; ">
      <seq>ggaataggttaactatggatatgatgccggaaacagaccaattttatatcacccttcaatgtgaattagcaaaagcgatgtctccttccatactatggataccaaaaattcattatctggatttgaatgagtctatgacaggatttatgattgtttgctatttgatgtgttaataggaatcctgactaaagagttctgaaataaaaaatttcattcctgttctacttgtgaggtaatcagtaatcagtctctgtactgatcaccaggttcaagtaatgtgccccccaccttttgcaatatatggattctaaagaattgaaatgtcatatcttcaatttagagttgcatacatgttccttttatagcactaatttttttgcttaatcgttggtcattctgctgcaagatctttacttgggtttcatggactgcaaaataaaatttttatagcagttttagtttgttgaaattcttgtgtagtttggagggtattacctgtccttgcatgcttgctttccttgtttttcgtctcttctgctttgattctgaataattgaagacagttattccacttccatgacatcctcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="71600" stop="70411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71301" g_stop="70711" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U602806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71301" e_stop="70711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATAGGTTAACTATGGATATGATGCCGGAAACAGACCAATTTTATATCACCCTTCAATGTGAATTAGCAAAAGCGATGTCTCCTTCCATACTATGGATACCAAAAATTCATTATCTGGATTTGAATGAGTCTATGACAGGATTTATGATTGTTTGCTATTTGATGTGTTAATAGGAATCCTGACTAAAGAGTTCTGAAATAAAAAATTTCATTCCTGTTCTACTTGTGAGGTAATCAGTAATCAGTCTCTGTACTGATCACCAGGTTCAAGTAATGTGCCCCCCACCTTTTGCAATATATGGATTCTAAAGAATTGAAATGTCATATCTTCAATTTAGAGTTGCATACATGTTCCTTTTATAGCACTAATTTTTTTGCTTAATCGTTGGTCATTCTGCTGCAAGATCTTTACTTGGGTTTCATGGACTGCAAAATAAAATTTTTATAGCAGTTTTAGTTTGTTGAAATTCTTGTGTAGTTTGGAGGGTATTACCTGTCCTTGCATGCTTGCTTTCCTTGTTTTTCGTCTCTTCTGCTTTGATTCTGAATAATTGAAGACAGTTATTCCACTTCCATGACATCCTCAGCT</genome_strand>
        <mrna_strand>GGAATAGGTTAACTATGGATATGATGCCGGAAACAGACCAATTTTATATCACCCTTCAATGTGAATTAGCAAAAGCGATGTCTCCTTCCATACTATGGATACCAAAAATTCATTATCTGGATTTGAATGAGTCTATGACAGGATTTATGATTGTTTGCTATTTGATGTGTTAATAGGAATCCTGACTAAAGAGTTCTGAAATAAAAAATTTCATTCCTGTTCTACTTGTGAGGTAATCAGTAATCAGTCTCTGTACTGATCACCAGGTTCAAGTAATGTGCCCCCCACCTTTTGCAATATATGGATTCTAAAGAATTGAAATGTCATATCTTCAATTTAGAGTTGCATACATGTTCCTTTTATAGCACTAATTTTTTTGCTTAATCGTTGGTCATTCTGCTGCAAGATCTTTACTTGGGTTTCATGGACTGCAAAATAAAATTTTTATAGCAGTTTTAGTTTGTTGAAATTCTTGTGTAGTTTGGAGGGTATTACCTGTCCTTGCATGCTTGCTTTCCTTGTTTTTCGTCTCTTCTGCTTTGATTCTGAATAATTGAAGACAGTTATTCCACTTCCATGACATCCTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587430" ref_strand="+" ref_description="SGN-U587430 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157327955|emb|CAO16919.1| (e_value=2e-102) unnamed; (*ATH) AT4G04920.1 (e_value=4e-94) | Symbol: None | expressed protein | chr4:2497929-2504798 FORWARD | Aliases: T1J1.2, T1J1_2; ">
      <seq>gaaagatactgaagtggagaaggaggaagagtcttcttctgtgattaccaattctctagaaccttctactaataaggttcacgagaaaccggatatcattattgaagacgacgacgacgatcatcctgctgcaattgtggctatggtgacggagaaggaggtctcttctgttgacgatgatcccatggatgaggatactgtcaatcctgctgtcgtcttttgtattaggctcaaacaacctaggtcaaatttgcttcataaaatgagtgttcctgaactttgccgcaatttcagtgctgttgcttggtgtggaaagctaaatgcaatagcttgtgcgtctgaaacatgtgcaaggattccaagttcaaatgcaaatccacctttctggatccctatacatatcgtcatcccagagcgaccaactgagtgcactgtgttcaatgttatagcagactcccctcgtgattccgtccaattcattgaatggtctccaacttcgtgtccacgtgcactactcatagctaactttcatgggagaataacaatctggactcagccttcacaaggttcagctaatctggtacgagatgctagttgttggcagcgagattaccaatggcatcaagatattgcagttgttacaaagtggttatcaggagtttctccgtataggtggctttcaacaaaaacgggcggttccgctaagtcaacatttgaggagaaattcctttcccagcaaccacaatctccaggctggatggccaaattttctgtgtgtatgcctctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="81730" stop="72705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81431" g_stop="81138" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81137" i_stop="77241" i_length="3897">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77240" g_stop="77172" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="363" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77171" i_stop="76999" i_length="173">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76998" g_stop="76910" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="452" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76909" i_stop="75889" i_length="1021">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75888" g_stop="75776" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="565" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75775" i_stop="75330" i_length="446">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75329" g_stop="75228" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="667" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75227" i_stop="75150" i_length="78">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75149" g_stop="75065" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="753" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75064" i_stop="73042" i_length="2023">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73041" g_stop="73005" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="791" r_length="38" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U587430" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81431" e_stop="81138"/>
          <exon e_start="77240" e_stop="77172"/>
          <exon e_start="76998" e_stop="76910"/>
          <exon e_start="75888" e_stop="75776"/>
          <exon e_start="75329" e_stop="75228"/>
          <exon e_start="75149" e_stop="75065"/>
          <exon e_start="73041" e_stop="73005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGTTGCTGATCGAAGTGTTGACTTGTTAGTCCGATCATTTGCCGACCAATACTATTATTAGAACATTCTGCTCCCAATATAATCATCACTAAAGTTTAACTTTCTAGATATATTATAAGGATTTGGGCCCTATAATTTGTTCATACATGCAGTAGTTCACCTATGCAAAATGAATTAGTCAAAAATATGTTATTTTTAATGAAGTTTCAGTGGAATATGGAAGATATGAGAAGAAAAACAGAAACTGCAGTCTCATTATGGTCTTACAGAACGACAGAGGGAAAGTTCAATGTTTTTTTTAGTTTCAGTATTTTTGTTCCTAGAGTTATTTCACTTTCTAGATAGAGAGAGAATCATCCTGGTAAGTGTAGTTGCATGCTAATCTGAGAAATTTCAAATTTGCTTTGCCATTGCGTCTTATGCCCTCAATGGGGTAATCATCTTCTTTTTTCTAATAAGTTACATAAGACGATAGGTTAAGTACCTTTAACAAGAGACCAGAGGGGTTTACTATGTTAGAGACTGAAGTACTTCCTCATTTGTTCCTAAATCTTAATAGAGGAGTTAGTTTTAATCCATCCAGTGAAGGGAACTTTAGAGAATAAGACAGAAGTTTCTCTATTTATCTTGCTACATTGTAGAAAGTGGTGAAGATTTTTTTTCTGAAACTGGTAACTCTAGTCTATATATCCACAGGTATACTAAAACAAAAGTGTAGTTCCCCTTCAAAAGTTTTACAACTTACAGAATAAAACAGTCTTAGTCGAAAACTGCTGCTTATAAACAATCTAGCACATCAAAGATATCTTCCGTCCTAGTTAATATATCTTGTTTACATCAAAAATAGAAAAGAGCTGAGCAGTCCATCTTGATCTTCTGTAAGCTATTCTGCCAATTTTCAAAACTCCTGCTGTTTCTCTCTTTCCAGATTGTCCACCAAATACATGCCGGGACAAGTTTCCATCTCTTCTCCTTGTCAGAAGCATTGCCATCTCTATTCCAGCTGCTCAGGACTCCTTTAATGCTCCCTGGTTTCACCCATCTGATTCCCTTTAGACAGATGCACATTCATTCTCCATAATTGTTATGGCCATGTACAATGCAAAAAAAGATGGTTAATTGTCCCAGCATGTTCTCCACATAAAGTACATCTAGAAGCCAACTGATAGCCTCTTGTCTTTAGATTTTCATGAGTCAAAACTGCTTCTTTTGTTAATAGCCACATGAAGTAGTTTACTCTGTAGGGTACTTTTGGTTTCCAGATGATCTTCCATGGCCATTCCATCTCCTGTCCAGCATTCTTGTTGAGTTTCTTATACACTGAATTTACTGAGAATTGACCTTTGGTATCATTTTGCCAAACTAATAAGTCCTTCTTATCAGTGAGGTTGCTGAAAGACCTTACTGAATCTTGAAATTCTGCCACTTAGTCAATCTCCCAATCCTGAAGGTTCCTCCTTAAGAACAAATCCCATCTTTGTCCAGTCCACATTGTAGCCACAGTGGCCTATTGATGTTGGCATAAAGTAAACAATTCAGGATGCAACTGTTTCATAGGGACAGATCCATTCCACTTATCCTCCCAGAAGGGTGTCTTTGACCCATCTCCCACTTCTACCTTGGTTCTGTGATATAGCACTGGCCATAGATTTCTGATTTTCCTCCATACAGTGCATTTATATGAAGTACTTATCATTTGTCATCCACATATTTTCCATGCCATATTTTGGTGACCTCTTTCCAGAGCATGTTATCTTCATTTGCAAACTTCCACAACCACTTCATCATTAGTCTCTGGTTTTGATTCCTTAGATTTCTTATGCCTAGGCCTCCTGTGTTTTTACTCACCATCAGGTCTTTCCATTTAACAGGAAAAAAAGTATCATTCTCAAAAAAAAAAAAGAAAGATGAAACTTCTTCTTATCTTCATTGCCTTGCCATAAGAAATTTCTTCTAAGAGCATCAATGCTATTAGATACATTGGCAGGCATAAGGAAGACTGTCATCATATAAGAGGGTAATGCATCCATCACACTGTAAAATCACTGTTAATTAAAGTCGATCTTCCTCCCAAGGACAAGTACTAACTCTTCCAGTTAATGAGTCTCTTTTCACATTTCTCATGTACCCCATTCCATATGTCTCTGGACTTGCTTTTAGCTCCCAAAGGCATACCTAGGTAAGTAGTTGGAAGCTCCCCAACCTTGCCTCCTAGTGTTCTGGTCAAAACTTCTGTATTAAGCACACCATTGATAGGATAGATGAAGTTTTTCCCCCAGTTAATGTGGAGACTAGATACAGCTTCAAAAATGACAAAAATGACCCTCAAAATCAGTATTTGTTTTGTCTCAGCTCTACAAAATACCAATGTGTCATCTGCATATTATAGATGAGTTATCTCTAAACTAGAAAGTTCTCCTGCTTGGAACCCCTTGATCCATCCTTTTCCCTTTGCTGTATTAATGAGGTTACTCATTCCTTCCATAGCTTAGATGAATAAAAATGGGGAAAGAGGACCCTTTGTCTCGGGAAAAAGCCAGTGGGTACTCTATTACAAGTATAGAGAACCTGACAGTGCCGATACAATGTTTTATCCATCTTATCGGGCCCCAAAACCCATACTTCCCAACATTTGTATAAGAAAGTCCCAGTTTAAGAAGTCATAGGCTTTTTGTATGTCCAGCGTGCATGCAATTCCTGGCTTATTACTCCTTTGTCTGGTCTCTATGCATTCATTAGCTATCAAAATGGCATCCATAATTTGTCTGCCCTTGATAAAAGCCATCTGATGCCTATCCACCAGGCTATGTATCACCCTCTTGAGTCTCTCTACTAGAAGCTTTGAAGATTCCTTGTATAACATTCCTGTGCACATTCACTGTATAAATGTTTAAAACATACTTTTTGTCAAGATAATCTTCCAGACATGTCTGATTTTTCTTCTTGATAAAGATTCCAACCTGTCTAAAATTGTTTAGCAACCTATCAGTTTCAAAAGAGAACTCTCATCTCCTGGATGTTCATTATGGAATGAGTATTTTGGCATAGAAGTTCTTTTTTGAAAGCATCCAAGGTTATGACCTAGTGGTCAATGAAGTGGTTGAGAGCCATGAGATCTCAGTGGAGACAAAAAAACTAGGTGATTCTTCCCATATATCTTAGTCTTGGTGGACAGAGTTACGTGGTACTTGCTGCTGGTGGGAAGTGAAAGGTATCCCGTGGAATTAGTTGAGATGCGTGAAAACTAGCCTGAACACCACGGTTATAAAAAAAGTAGTTCTCTTTTGAAAATTTCCAACTCCTATGCTGTGACTCTGCTTTGCTATGATCTGTAGAGTGTAGACTGTTCTTGACTCAGAGAACATGGAAAGGAAATCTCCTTTCATGATCTATCACACATTTATTAGTATGCATATATCCTTGAAATCACTATCAAACATGTATAAATCCTTGGTTTCACAATCAAGAACATGCTTTTGATGTTATTTCTCTCTCTTTCTCTCTCCCCTCTCTCTCTCTCTCTCACTCTTTTTCTCCTTGTTCCTCTGGCAGTTGCTTTCATCTCAAATGGATAGATATATTGTCTTTTGTACTGAGTTGCTTTTTTGAAATGTTTTTTTAGTGCTGTTGCTTGGTGTGGAAAGCTAAATGCAATAGCTTGTGCGTCTGAAACATGTGCAAGGATTCCAAGGTTAGAGCCTCGATTTCCATCACTGTAAATTACTTCAGCACTCTGTACTTTACTGCACATGGATATTATAACTGTCCAGTGTTTCTGCTAATTCGATGTGGTCAAATTCTGTAGATATCACTTTATATCTTTCGCTCAACTGTTTTATTCTTATTACTTCTACCTTTTTGTAGTTCAAATGCAAATCCACCTTTCTGGATCCCTATACATATCGTCATCCCAGAGCGACCAACTGAGTGCACTGTGTTCAATGTTATAGCAGGTATTGTAGAATGACTTGACAGTGGCCATGGATTTTTCTTCCTTTTGCAAACATGTTTAGAACCTAACAAACGAGGCCCTCTCCTTTAGGTCCAGCAGTTGTTTATGCATGAGATTTTCTGTTTCCTCCTCTGATTTTCTCGCACATAGAAGGAAAATCCGAGATATTTGTGAAATGGTGAACAAATGAAAACTGAACAGACGGTGCAATGCAAAGCAGTGGATAAACAACTCTTCATGGAGGAACAATTAATTAAGTTCTCAACTTTTTGAGTAATATGTGACGGACCTTCAGTGTATTAAAGAATTCTTAATGTTTGTTGTGACATTTAATTTTTCCGACCATCATATATGGGATGCTAGATTGCTTATCAGTGTTTGTACTAAAATATCTTGGAGTGCCCATTTTGAAGTGACAATTTGAATTGTCTAATTATCATAAATATTTGGTGAGATTGCATCTGGACAAAATGATCCTTCTAGTTTCCACGCAAAGCCCGAATCAAGCTTTGACCTTCTAGCATAATATTAAAAACTATTCATTGAAATTGGAGTTGATTAATTTTTACATGATTGCAGTGGATTAGAAAATAGTTCGAGTAGCTTAAAAACACTTTTACATGATTGCAGTGGATTAGAAAATAGTTCGAGTAGCTTAAAAACACCCTCTTTTCAAGAGGACTTAGTTTGTTTTGATTTCAAATGCGTAAGAGTGCTTTTTTTTCCTTTTTAGATAACTAAATAGGCCGTAAAGCTCTGGTCCATTGTGTTGTTGTTGCACTGAACTGAATTTTGTCCGAAGAGATGCTCACTTTTAACTCTTGTGCATGATTGATTACCGCCAGGTGGTTTATTTTGATATTTCATCTTTTACATTTTACATTCTACAGACTCCCCTTGTGATGTTGTTGCACTGAACTGGCTTTGTCCGAAGAGATGCTCACTTTTAACTCTTGTGCATGATTGATTACCGCCAGGTGGTTTATTTTGATACTTCATCTTTTGCATTTTACATTCTACAGACTCCCCTCGTGATTCCGTCCAATTCATTGAATGGTCTCCAACTTCGTGTCCACGTGCACTACTCATAGCTAACTTTCATGGGAGAATAACAATCTGGACTCAGCCTTCACAAGTAAGCTGTTTTTTCTGGAGTTTACTATAGTGCATTTTGTTGTCCTTTTCACTTTTTGTTTCATGTATTTTTGGTTACTTGCACGTTCTTGGTGAGGGGTTTCTTACCTTTTCCATGTCACATCTGCTAGCCAACATCTTGATTGAGTGTTGGTTTTTCTCATATGTTACAAATTCAAGATTAATTCTGCCTTGTTGCTTCAAAAACTATTCTTACTTACTGCACTTAAGGGTGTGGTCCAATGGTCAATGAAGTGGGTTGGTCGTAGACTCAGATTCCAACAAAGAACACTAGGTGATTTCTTCCTATCTGTCCAAGCCTTGGTGGATAGCTGGTGAGAGGTAGGAGGTACCCTGTGGATAGAGTTACCCAGTTCCTGGTCCTGACACCACACTTTTTTTTTTAAAAAGAACTATTCTTACTTAAAATGTATGCTTGGTACACAGGGTTCAGCTAATCTGGTACGAGATGCTAGTTGTTGGCAGCGAGATTACGAATGGCATCAAGATATTGCAGTTGTTACAAAGTGGTTATCAGGAGTTTCTCCGGTATGTAATTGTTATGGTTTTGTGAAACTTGCATAATTCGATCGGTTCATTTCTTGATTCTTTTATACCTAAGTTTAGTATAGGTGGCTTTCAACAAGAACGGGCGGTTCCGCTAAGTCAACATTTGAGGAGAAATTCCTTTCGCAGCAACCACAATCTCCA-GGCAGGTTCCTTGTTTTCGCTCTTTATTTTGAATATATGTTCCATCAAATGAGTAGTTATTTGGTACATATGTTAAGTGATTCAAAATATATTTCTGGTGCATATCAAAGCAATATTGTCATAGGTGAAAAATGAAAAAGCGTCCAGATTTGTTGGGCTTTAAGCACATAGATAAAGTAAAGCACAGTCTTCAATGGAAAAATGCGCAACCGAAGAAGAATAAAAGAAAATATATATGTAATCCAAGAATAATAACTACAATCACTGACAACAATCATGTGGATAAATAATTGGTAAAATTATAATCATATGAAATAGTTATTTTTTAGTATTGCTCTCTTTAGTAGTCCATAGATGGTGGGACACATCCTTAGCATCTTAGTGCCTGAACATTTATTGTAGGCTTACGAGTCATTGATTGTATCAAAACTTAAAACTGAGCCTGTTATTAACTTATACATGGCCTGTTATGATGTGGAGAGGAAGCGAAAAGGGATGTGGAAGATAGAATAGGAGAAAGATGATGTGAACCTGTTATTCCAGCATGAAAATTGGTTGATGGACTTGATTTTCAAGATGGTATGATCCTAATCATAAGAACTGTAAGTTCAAAAGGCTTGACTTAACTAGACTTAATATTATAAATTGACTCTTAAAATGGAGAGCTCGAGCATGCTCAACTAGGTATGCCAAATTTTGCCAGAACAGGTGCAATGATATGGTAATCCATCTTCTTTTAAAAAATAAATCAAAAATCTGGTTTTTTAACTAAATAAACACTTAAAAGGAATAGGAAGCTTCAAAATAGACTACTAGTGGAATGCTGGTTTTAAATCTGGAAAAGAAGTAATGATGAGAACAAATGCTGCGTAAGTTGAATGTAGACTGGTGTAGTTAATCCTTCTGATGAGACATACTGTATTGATGAGCTGTCATCTTCTTTCGGTCGTAGATTTACCAAGTCCAAACACAACAAATTTCTTACCTATCCAAGTATAATTGCCAACCTCAACAAGGGGACTGACCTTATAGAAGCAGAAAAATACTGGGATTTTTGACTAAATATGCAGCAATCAAAACTGCACAACGCAGTGACAGGAGGGGTCAGGACTTCCTTAGTTTTCAATGTCACAGCATTAGGGGAATGCAGTGTTGAGAACATAGGAGAAGTAATCATTTTAAAGTTACAAGATAGCCACCAACTTATGGAACATGTTTTTTTGCATCCTTGGTGTGTGCTAGGTAACTCCACAGACTACTAAAGGGCTTCTAGACAGCTGGAAGGAGATAGGACGGAGACACTCTCCTGAAGACTGGTTGAGCTATTCCAGCTTGCATTTGGTGGACCTTATGGAAAGAAAGAAATGCTAGATGTTTTGAGGATAAGAGCAACAACATGGAGAAGATTAGAATGAATAGCCTTAGCCTTTTGTATATTTGGTGTAAAAAGGATATGAGGGGGGATATAGAACTTTTTGTTGATTTCATTGGCAATTTGTAATCTCTCTAGGGGTAGGCTTTTGATATTCACTGATGAGATTGTAAGTGAACTATGCCCATCATTTTCTGTGGACGATACTTTTGTGAATACATAGTACCCTTGTCTCAAAAGAAAACTTGGAATTTGTGGGGTAGCATATGAATTATGAAAAGCAATATTTAGGTTTATGCCTCCATATGCAATTTATATGTAAAAAAAACCTTGAACTTAGTCTGCTTTGCTGTTCTAGTCACGAGTTTGCTTCAGTTCAACTTAGGTGAGCCTTGCGAAGTCTAAAATGAAGTGATCTTGAATAGCTTGTGAACTGTCCCAGTTTACTTCAGCCGTTCCACGCAAGTTTGTATCAAATTGCAGGTTGATACTATCTAAATCCGTGGAAAATGATAACTTTTTCGTTTCACCATCAATTGCATCAGCTGCTGATCTTGCTACTTTTGCCATCATGTGTCCACAGTGTTCTTTTCTCCTCTTCAAAACAACTGAAAAATTCCTTAACTAAATTATACTGTAATTTTGACTGCAGCTGGATGGCCAAATTTTCTGTGTGTATG-CTCTGTCTT</genome_strand>
        <mrna_strand>GAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTTGGTGTGGAAAGCTAAATGCAATAGCTTGTGCGTCTGAAACATGTGCAAGGATTCCAAG.............................................................................................................................................................................TTCAAATGCAAATCCACCTTTCTGGATCCCTATACATATCGTCATCCCAGAGCGACCAACTGAGTGCACTGTGTTCAATGTTATAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCTCGTGATTCCGTCCAATTCATTGAATGGTCTCCAACTTCGTGTCCACGTGCACTACTCATAGCTAACTTTCATGGGAGAATAACAATCTGGACTCAGCCTTCACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGCTAATCTGGTACGAGATGCTAGTTGTTGGCAGCGAGATTACCAATGGCATCAAGATATTGCAGTTGTTACAAAGTGGTTATCAGGAGTTTCTCCG..............................................................................TATAGGTGGCTTTCAACAAAAACGGGCGGTTCCGCTAAGTCAACATTTGAGGAGAAATTCCTTTCCCAGCAACCACAATCTCCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGGCCAAATTTTCTGTGTGTATGCCTCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587431" ref_strand="+" ref_description="SGN-U587431 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157327955|emb|CAO16919.1| (e_value=5e-14) unnamed; (*ATH) AT4G04920.1 (e_value=4e-12) | Symbol: None | expressed protein | chr4:2497929-2504798 FORWARD | Aliases: T1J1.2, T1J1_2; ">
      <seq>gattcaaatgaacaatcaacaaccacctgttgctaaagatactgaagtggagaaggaggaagagtcttcttctgtgattaccaattctctagaaccttctactaataaggttcacgagaaaccggatatcattattgaagacgacgacgacgatcatcctgctgcaattgtggctatggtgacggagaaggaggtctcttctgttgacgatgatcccatggatgaggatactgtcaatcctgctgtcgtcttttgtattaggctcaaacaacctaggtcaaatttgcttcataaaatgagtgttcctgaactttgccgcaatttcaggtgattttttaaaattttgtttatgctacatctcaattctggctacatgacttagaagatgatatcaatattttttttccttataactaaagtaaggatacgatcgaatttaaaaaaagcagaaaaagtgagattagtctgttagaggtttacttagttatgctggaagtggagaacttgttggaacttcgcagtttaactgttgaggcggtggaagtcactgaattgagttctaaagttgctgtacgttgagctcactgcctcaagtgatagctagntgctgatcgaagtgttgacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="81763" stop="80537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81464" g_stop="80837" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U587431" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81464" e_stop="80837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAAATGAACAATCAACAACCACCTGTTGCTAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGTTGCTGATCGAAGTGTTGACTTGT</genome_strand>
        <mrna_strand>GATTCAAATGAACAATCAACAACCACCTGTTGCTAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGNTGCTGATCGAAGTGTTGACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579557" ref_strand="+" ref_description="SGN-U579557 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|90398982|emb|CAJ86254.1| (e_value=3e-58) H0801D08.12; (*ATH) AT3G09010.1 (e_value=1e-55) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:2749958-2752281 FORWARD | Aliases: T16O11.3; (*SWP) sp|Q9C5S9|CRK6_ARATH (e_value=7e-41) Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6; ">
      <seq>tgcttaacacatgcaagtcggacgggaaacacgggaaacggtgtttccagtggcggactggtgttcccctcccaaagcagtgtattggtggtgaaggctaacatttcatttactcatcaaaaggcactatcaattgatttagacacgctaattgacatgagttgttgcttctttggcgaccggaaaaagggtcatgatctcgttcaccatgatacaagagatgcaggaggtgactccattgcaagcacaaagaatttttcatttaatgaattaagattagcaaccaacaacttccatcaaattaataaaatagggcgaggcggttttggcacagtatacaagggaactctaaaacaaggaaaagatgttgctgtgaagacactagcagcagaatcaaggcagggtttgcgggagtttttgacagaaattgagacaatatcaaatgtcaaacatccaaatctagttgagataattggatgctgtgctgatggaaataaccggattttggtctatgaatatttagaaaatagaagccttgatcgggcactgtttggttcaaggactagtattaagttagaatgggaaaaaaggactactatttgcttgggtactgctcgaggtcttgcatatctacatgaagaactagtgccacatatagtgcacagggatataaaagctagtaatattctgcttgacagggatatacaccaaaaattggagattttgggcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="88839" stop="91497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89149" g_stop="89171" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="80" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89172" i_stop="90019" i_length="848">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90020" g_stop="90168" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="229" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90169" i_stop="90352" i_length="184">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90353" g_stop="90465" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="342" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90466" i_stop="90723" i_length="258">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90724" g_stop="90934" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="553" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90935" i_stop="91015" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91016" g_stop="91197" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="734" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U579557" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89149" e_stop="89171"/>
          <exon e_start="90020" e_stop="90168"/>
          <exon e_start="90353" e_stop="90465"/>
          <exon e_start="90724" e_stop="90934"/>
          <exon e_start="91016" e_stop="91197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGTTCCCCTCCCAAAGCAGGTTCTTATATTTTATGGAATTAGATGCTTAGCTGCTATTTATAATTACTTGTTTATTTTTTTTTTTTTATAATTACTTATTCATTTTGACAAATTAAAAAAATATAATTTTTTAATTAATTATTTTGAAAATGATACAATTGATCCATTCATATTACCAAAGGCTAAAATAATAAACTCGATTATGTTAACAATTATTTTTTAATAGGTAGTCAATTATGTTAATAATTATTTTTTTTAATAAGTATGTCAATTCAAAAATAGACAGAGAAAATGAATCCCGTGGAGTTTACGGTTTTTTCTTTCTCTATTTTAATTTTATAGTAATGGAGATAGTTCATTAGCATGTTTAACCACTGTTATCAAAAACGAGTAAAAGTCTAAAGTCAATTGGGGCTTTAATGAAAAAGCGAAAATGAAGAAATTATAAAGTGAAATATCAATTGTATATTGTGTAGTGATGTTAGCGAAGGTTCAATATGTTTTATTTGAGCCTTGCGATTTTGACAATACTCTATTTAGCACATCAAGCAATCAAATTCGTTTCCTTTTGACTTTCTGTAGAACGTTTTTTTTTTAAATTTTAAAAAATAGAATATATGTAAGCAAACCTTTATTCAACTGCAGCCTAATGACAGTGTTTTCAAACCCCTGCAATTTTATTGAATCAATATTGAGAATCATACTTATTTTGATCATTTATAAACTTTTGTACAATTGTTTATAGTACAGACAGTAGATATAAATGATGCTATTTTTAGCTTCTTCAGCTGAATAAATATGGTTGTGCCTCAATAATTAGTTTGACAAGCTGAAGGAGGAAGTTTTTTTTTGGTTTTGTTTTTACAGTGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAGGTTAGTGGGAACTGGGATGTTTTTCTGTTTTTTCAGAGGACTTGTTTGCAACTTTATGCCATTGGAGATGCATTGCGCATTTGGTTGTAGATCATCTTCAACCTAGGCATAAGTAATGCCAGTGCAAATGCTGTCTTGAGTAAATTCAATTCATATACCATAACTATCTTTATATATCTGGCAGGTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAGGTACAGCTCTACTCAACGAATACGTCTCATGCTTTTTCATGCAGCAGTTTTGTGCATTGGACAACTTATTTTTGTGTCTTTTGCATAGTTCTGTTTAAAGTGTTACATTCTTGGATGTTATGGTTTAGTTCAAGTTATAGTAGTAGTAGGCAGATTTTTGAAATTCTCAGGAAATCTGCATTACTAACTTCATATTTTGTTATTAGATTTTCATTATTATCTCCCCTTTAATGGAGTTGTGTAATACGGTAATTGCAGGGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTGGTAATGGCCGAACTTCTGGTAAAATAAAGGATTAACTTGAGAATTATGGAATGGCTGATAATGGTATTTTTTACTTTGCAGGTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAAGGATTATACACCAAAAATTGGAGATTTTGGGCTTGCT</genome_strand>
        <mrna_strand>CTGGTGTTCCCCTCCCAAAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG........................................................................................................................................................................................GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG..................................................................................................................................................................................................................................................................GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG.................................................................................GTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAGGGA-TATACACCAAAAATTGGAGATTTTGGGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569177" ref_strand="+" ref_description="SGN-U569177 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147832853|emb|CAN72814.1| (e_value=4e-22) hypothetical; (*ATH) AT3G09010.1 (e_value=1e-14) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:2749958-2752281 FORWARD | Aliases: T16O11.3; ">
      <seq>gagntggtggatgaagaactagatgaattcccggagagagaagtcgtcaggtacatcaagacggctctgttttgcacacaagcaaatgcaaacagaagaccaatgatgagccaggttattgagatgctttcaagagatatccagctaaatgagaaagaacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaaggcgttgtcaaagttcctagacaaaattccagcaatttatgtgtattatttttgtatgacaaacatttttttggatcctgttttttaccttattatttttattctgacaggtattatattaaaccgataacattatatagtttcaagtaaaatattctttcaaaataatattttatcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="92881" stop="94292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93181" g_stop="93992" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-U569177" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93181" e_stop="93992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGGTGGATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAAATATTCTTTCAAAATAATATTTTATCAAGAT</genome_strand>
        <mrna_strand>GAGNTGGTGGATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAAATATTCTTTCAAAATAATATTTTATCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580379" ref_strand="+" ref_description="SGN-U580379 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|147832854|emb|CAN72815.1| (e_value=7e-79) hypothetical; (*ATH) AT2G20760.1 (e_value=4e-61) | Symbol: None | expressed protein | chr2:8949844-8952304 REVERSE | Aliases: F5H14.27, F5H14_27; ">
      <seq>gtgcgcatatataggtgtactagagagaaggaaaattcgagagattttgcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaggatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacagacattagctgcattttgttgcattggatgtctgagtttgtttattgtactatttaggtcctttcttaactggaggtgaattcattattttcttgtttacagaaaccttatatttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98710" stop="94251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98410" g_stop="97924" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="641" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="94551" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="1332" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U580379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98410" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="94551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGCATATATAGGTGTACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTG</genome_strand>
        <mrna_strand>GTGCGCATATATAGGTGTACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564873" ref_strand="+" ref_description="SGN-U564873 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147832855|emb|CAN72816.1| (e_value=3e-12) hypothetical; ">
      <seq>ctaaaacacaggctgctgaaagggctcttgttgctctgaagtctgagctggctcaattttctcacaagcgccagggttctccaagatcattgcagcagcagggattttctaataaaagattgaaacctgaatattctcggggtgtgcagcagagagtaccattgtctggtagattcccgaagaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttttgtgtatccccagggtacaatttactgtccaaatgtaacatcctcaattgattaatgccatctttagttttcagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="101279" stop="31491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101062" g_stop="101052" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101051" i_stop="100974" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100973" g_stop="100900" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="85" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100899" i_stop="100555" i_length="345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100554" g_stop="99786" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="857" r_length="772" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99785" i_stop="98480" i_length="1306">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.682" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98479" g_stop="98464" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="873" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U564873" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101062" e_stop="101052"/>
          <exon e_start="100973" e_stop="100900"/>
          <exon e_start="100554" e_stop="99786"/>
          <exon e_start="98479" e_stop="98464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACACAGGTGCTTACTTTTTAAATTCCTCTCTTATCCCTTTTCTCTATGATTTTAAAATTTTGGGCTGCACATTTGTTTCTCTAGGCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAGGCAAGTGATTTCAGGCATTTCACTTTTGAAACTAGACTAATGTAGTTTCCCCTATTTGGAAGGCAATTTTTTTCTTCTGGCCACCCAGTAAACCTAATGAAATTCTTTCTGTATATGTGTGGGTTTGGGGTGGGGGTGGGGATTCTGGTTTGTCTTTTTGCTGCCATCTGTTCATAATTTATATTTTTTTGCCTCCTTCGCATCTTGTTATTTAAGGGTGAGCGGGTATTGGATTTCTGATGAAGCCATTATCTTTATTTTAGAGCTGTGTTCTCCATGGCTTTGTTTTGGAGGTAAACCAGTATTAGCTTCTGATTGTGCATTTATTGTTGCTCTTTCATCCAGATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTG-----TTTTTT-TGTAGCCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCAATTGATCGTCTCTTTTTATTTTCCAACTCACGTCATCTTCACCCTCACTCAATATCGAGTAGGACATAAAGGGTGAGGCAACTCTATCTTCAATTTCAAAGCTGCAGGTTTAAGTCATCGAGTTCAATTTTTGTGATCTCCTCTCTTGGACCAAGCATAGTTTTTGTTTTTAATTTTCACAATATTCAAATATAAGGATATTTGACTCGTCGATTTCACTCGCTCTTTTAATATATTCTTAGAAGAATTCATGACACTGCACAAATAAGTGTTTCATAGTTACTTGATAGTCAAATAGAATGAACAACATTGTGTTCGGATTATTGTTACTCATTGTTTCATAATGTATTGTACTCTGTTGTATCGTATGATAGATATAATGCTTGGTTAGACTATATTATTTGTTGTTGTTTATAACATTTTAATTGTCTGGTTTGATTGTATTGTACTGTACTGTAATTTATAAATTTATTAAAACATTCTTAATTATCTTAGGATAGGAGGTTTGACTAGAATTAAATAATATAAGGTAAAAGGTGAAATGATATTTTGAAATAGTATGTAAAGATATAATTGGAAAAAGAAATTAAGTAATAATGGCAAAATACCAAATCGTTGTTCTATAAAAATAGGGATTTTCATTGTTACATAACAACGAAATTTAACAATACAACACAATACATTTTAAGTAACAAATAAAACAAACACTGTAGGTATAATAATGATATAATACAATATAATGGGTAACAATGATCCAAACAGAGGATAAAAAATGTTTGAAATGAATTAATTAAAATGTCATTCATTTTTATTGAAAGGTGGATAAAAAAGGAAATAAAACTAACCACATATTAAAAAGGTAAATACCTTATACTAGCAAATATTAAAAAAGAATCGTCGTAATAAAGATACACTTGATAAATTTTTCATAATAATTTATGAAAATTCAAAAAATAAATTTGGAAAATATTCTTAATAGAGGTAATTTTTTGGTATTTTCCCTTTCAATTAAAGATATCTGCAAGATTGAACAAAATTCATATACTTGTCAAAAAAATTATCCTATAATTTAAACCCATAAATAAAACATTCTCAAGTCAACAAATTGTCCATCCAACTATTAATTTACCTTGTCATTAGTCAATTTTTTTTTTTTTTTTATTTTAATTAGACATTTTTAAATTTTATAATACATAATATTTTACTCAAAATATGAACTTTCGATAAATTTAATCAATTTTAATACAAATATGGATATGATAACGAAAAACTAATACATATATTCTATTTTTTTCTTACCAAAAAGGAACGAAAAAGAAAAA</genome_strand>
        <mrna_strand>CTAAAACACAG..............................................................................GCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAG.........................................................................................................................................................................................................................................................................................................................................................ATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTTTGTGTATCCCCA-GGGTACAATTTACTGTCCAAATGTAACATCCTCAATTGATTAATGCCATCTTTAGTTTTCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600237" ref_strand="+" ref_description="SGN-U600237 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157327957|emb|CAO16921.1| (e_value=2e-86) unnamed; (*ATH) AT4G21670.1 (e_value=6e-84)  Symbol: None | similar to double-stranded RNA-binding domain (DsRBD)-containing protein [Arabidopsis thaliana] (TAIR:At5g01270.1); similar to OSJNBa0074L08.12 [Oryza sativa (japonica cultivar-group)] (GB:XP_473264.1); contains InterPro domain NLI in... ; ">
      <seq>ggtcaagcgttaccaggaggataaaattattttaaagcaatatgccgaaaatgatcaggttgttgacaatggaaaggtgatcagatctcagtctgaggttttccccgcattgtctgataatcaccaacctattgtcagacccctgattaggttgcaagatagaaacattattcttactcgtattaatccaatgatccgtgatactagtgttcttgtgagattgagacctgcttgggaggatctccgcagctatctgactgcaaggggtcggaagcgctttgaagtttatgtgtgcacaatggctgaaagagattatgctttagaaatgtggcgccttcttgatccagattcaaacttgattaactcacaagaactcttggatcgtattgtctgtgtcaagtctggcttgaggaaatctttgttcaatgtattccaagatggaaattgtcatcctaagatggcattggtgattgatgatcgcttgaaagtgtgggatgataaggatcaacctcgagtgcacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="108205" stop="106738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107905" g_stop="107713" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107712" i_stop="107451" i_length="262">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107450" g_stop="107240" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="404" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107239" i_stop="107158" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107157" g_stop="107038" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="524" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U600237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107905" e_stop="107713"/>
          <exon e_start="107450" e_stop="107240"/>
          <exon e_start="107157" e_stop="107038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATGGTATGTGGACTTTGTACTCTATCGTCTATACCATGTTATCCCTGTTTTGTTAATCGTGTCATTTATGGTCCACTGATGACTAGTTGACAGCCAGATGAGGAATGCAAGTCATTTGTAGTCTTACGTTTACTGTTGAAAGGGGTTCAGTGATAGGACTATCCATTTCTTTCTCCCCTTCCTCTTTTGCATTAAACTGTTTTATGGTCTGTAGCTTTATCATACTTTTTTTGGGGGGATGCATCACATATTCTTTCCATGGCAGATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTGGCAAGTTTCTAAATTACAAAACTTTCGCTAGTGCATTGTTCTTTTTCTCTCTAATCACTGACTTTTCATGATTATTTTGTAGGCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGATAAGGATCAACCTCGAGTGCACGTTG</genome_strand>
        <mrna_strand>GGTCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATG......................................................................................................................................................................................................................................................................ATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTG..................................................................................GCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGATAAGGATCAACCTCGAGTGCACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565855" ref_strand="+" ref_description="SGN-U565855 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gtgtaataagagatagagagagaaggagataagagagagaaagtacaaaattgacctttcactctgtgtggatctagggtttcacaaaacacagttgagccaccgcatcgtcatctacaccgccgtacaacaactactatctgaaaaatcatctaaaccctacttttaatcttctcttaatcatcatcttctataaagaaaccctaaaactttcatttttttgggtatttttttgggtaaatctgaatgaaatttgataaacgatgacgttttattggtagatttgataagatctgactttttttttcctgtttcgattggattttaagcataatttctagatcgatctatattgacgatganaaactgaaagggaaaggatagaaattggttttaatttttgaattttttgtgattacagagaaacaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="110683" stop="109652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110383" g_stop="109952" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-U565855" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110383" e_stop="109952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAATAAGAGATAGAGAGAGAAGGAGATAAGAGAGAGAAAGTACAAAATTGACCTTTCACTCTGTGTGGATCTAGGGTTTCACAAAACACAGTTGAGCCACCGCATCGTCATCTACACCGCCGTACAACAACTACTATCTGAAAAATCATCTAAACCCTACTTTTAATCTTCTCTTAATCATCATCTTCTATAAAGAAACCCTAAAACTTTCATTTTTTTGGGTATTTTTTTGGGTAAATCTGAATGAAATTTGATAAACGATGACGTTTTATTGGTAGATTTGATAAGATCTGACTTTTTTTTTCCTGTTTCGATTGGATTTTAAGCATAATTTCTAGATCGATCTATATTGACGATGAGAAACTGAAAGGGAAAGGATAGAAATTGGTTTTAATTTTTGAATTTTTTGTGATTACAGAGAAACAACGC</genome_strand>
        <mrna_strand>GTGTAATAAGAGATAGAGAGAGAAGGAGATAAGAGAGAGAAAGTACAAAATTGACCTTTCACTCTGTGTGGATCTAGGGTTTCACAAAACACAGTTGAGCCACCGCATCGTCATCTACACCGCCGTACAACAACTACTATCTGAAAAATCATCTAAACCCTACTTTTAATCTTCTCTTAATCATCATCTTCTATAAAGAAACCCTAAAACTTTCATTTTTTTGGGTATTTTTTTGGGTAAATCTGAATGAAATTTGATAAACGATGACGTTTTATTGGTAGATTTGATAAGATCTGACTTTTTTTTTCCTGTTTCGATTGGATTTTAAGCATAATTTCTAGATCGATCTATATTGACGATGANAAACTGAAAGGGAAAGGATAGAAATTGGTTTTAATTTTTGAATTTTTTGTGATTACAGAGAAACAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>27</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4839" PGL_stop="11461"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4839" e_stop="5057"/>
            <exon e_start="5530" e_stop="5697"/>
            <exon e_start="6364" e_stop="6432"/>
            <exon e_start="7001" e_stop="7094"/>
            <exon e_start="7263" e_stop="7363"/>
            <exon e_start="7495" e_stop="7543"/>
            <exon e_start="7622" e_stop="7681"/>
            <exon e_start="8358" e_stop="8426"/>
            <exon e_start="8738" e_stop="8821"/>
            <exon e_start="8917" e_stop="9000"/>
            <exon e_start="9340" e_stop="9425"/>
            <exon e_start="9774" e_stop="9864"/>
            <exon e_start="10620" e_stop="10700"/>
            <exon e_start="10952" e_stop="11026"/>
            <exon e_start="11122" e_stop="11461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.434" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4839" e_stop="5057" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.933">
            <gDNA_intron_boundary i_start="5058" i_stop="5529" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5530" e_stop="5697" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.968">
            <gDNA_intron_boundary i_start="5698" i_stop="6363" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6364" e_stop="6432" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.970">
            <gDNA_intron_boundary i_start="6433" i_stop="7000" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7001" e_stop="7094" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.802">
            <gDNA_intron_boundary i_start="7095" i_stop="7262" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7263" e_stop="7363" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.833">
            <gDNA_intron_boundary i_start="7364" i_stop="7494" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7495" e_stop="7543" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7544" i_stop="7621" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7622" e_stop="7681" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7682" i_stop="8357" i_length="676"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8358" e_stop="8426" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8427" i_stop="8737" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="8738" e_stop="8821" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.434" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="8917" e_stop="9000" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.787" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="9340" e_stop="9425" e_length="86"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="9774" e_stop="9864" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="10620" e_stop="10700" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.704" acc_prob="0.966">
            <gDNA_intron_boundary i_start="10701" i_stop="10951" i_length="251"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="10952" e_stop="11026" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.697" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11027" i_stop="11121" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="0.994">
            <gDNA_exon_boundary e_start="11122" e_stop="11461" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4839" stop="5057"/>
              <exon start="5530" stop="5697"/>
              <exon start="6364" stop="6432"/>
              <exon start="7001" stop="7094"/>
              <exon start="7263" stop="7363"/>
              <exon start="7495" stop="7543"/>
              <exon start="7622" stop="7681"/>
              <exon start="8358" stop="8426"/>
              <exon start="8738" stop="8821"/>
              <exon start="8917" stop="9000"/>
              <exon start="9340" stop="9425"/>
              <exon start="9774" stop="9864"/>
              <exon start="10620" stop="10700"/>
              <exon start="10952" stop="11026"/>
              <exon start="11122" stop="11461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGTATTAGCAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG : ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG : GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG : TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG : TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG : AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG : CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG : GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG : GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG : GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG : GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG : GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG : ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG : ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA : GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCT</gDNA_template>
            <first_frame> Y  V  L  A  E  I  R  G  E  S  S  S  F  N  N  S  *  N  P  R  L  R  N  *  S  I  E  N  L  Y  L  I  Y  N  N  N  A  A  S  E  D  R  R  Q  E  F  H  G  H  G  G  F  I  A  C  H  E  T  R  H  A  L  R  Q  F  L  Y  L  *  S  H  S  *  :  I  V  T  S  L  S  E  E  V  C  A  A  N  V  V  Y  R  H  T  N  Y  S  Q  V  D  G  G  V  G  A  S  R  W  I  L  K  A  *  S  C  H  *  *  I  D  T  A  E  S  N  D  R  N  I  *  Q  :  E  K  G  S  H  V  S  T  K  P  K  I  S  I  *  S  S  E  A  Y  S  L  W  :  W  S  L  T  K  G  T  N  A  F  *  Y  H  C  E  A  S  *  L  G  G  V  R  G  I  C  C  R  T  M  G   : V  L  S  A  E  P  Y  K  L  Q  *  S  W  K  D  H  K  H  K  L  F  D  D  E  N  L  P  A  W  T  F  K  S  E  :  R  R  *  R  T  S  K  V  D  *  K  W  V  P  I  L   : A  N  G  H  K  C  T  A  L  V  H  H  Q  G  V  H  N  K  C  *   : G  A  R  S  G  F  S  R  S  Y  C  I  S  F  G  A  K  L  S  C  Y  W  Q   : G  I  Q  Y  K  H  N  N  *  S  P  E  K  Y  N  *  G  P  F  R  F  G  I  G  Q  A  A  A   : G  K  E  R  E  L  V  Y  S  D  Q  T  G  D  Q  P  V  N  *  L  S  G  Y  N  Y  *  E  T   : G  F  Y  R  Y  *  N  K  L  Q  T  V  C  I  F  N  I  K  I  A  L  *  D  P  T  P  F  C  K  :  G  G  I  P  A  S  K  S  H  C  W  C  Y  *  *  R  E  F  I  *  S  F  S  K  R  H  Y  F  *  A   : D  S  F  F  P  S  A  E  C  T  S  *  G  C  R  E  N  T  I  C  A  G  E  C  Y  *  S   : D  *  I  V  G  I  *  S  E  S  G  *  D  D  A  S  P  L  L  R  *  I  P  F  *   : R  C  L  *  G  C  L  *  F  C  Q  R  I  W  R  I  T  V  G  G  L  *  A  H  A  S  R  C  *  S  *  Y  F  S  R  D  E  G  I  S  S  S  S  K  A  I  T  L  L  C  I  L  S  S  F  K  *  R  V  S  S  V  M  S  I  Y  I  F  I  P  N  L  T  C  T  *  I  L  L  W  V  Y  C  I  S  L  C  F  D  F  L  L  S  T  P  C  D  V  V  L  I  M  G  L  Q  I  I  V  K  T  I  D  S   </first_frame>
            <second_frame>  M  Y  *  Q  K  L  G  E  N  H  H  H  S  T  T  A  K  T  L  D  *  E  I  E  V  L  K  T  F  I  *  S  I  T  T  M  P  Q  V  K  I  V  A  R  N  F  M  D  M  V  A  S  L  P  V  M  K  L  D  M  L  Y  D  N  S  F  I  C  E  A  I  L  R :   S  L  P  P  L  A  K  K  Y  V  L  Q  M  L  Y  I  D  I  P  I  T  A  K  S  M  E  E  W  V  L  P  D  G  F  S  K  H  K  V  A  I  D  R  L  I  Q  L  R  V  M  T  E  T  F  D  R :   K  K  E  A  M  Y  Q  L  N  P  K  F  Q  F  N  L  Q  K  H  I  V  Y  G :   G  V  L  P  R  E  P  M  P  S  N  I  T  V  R  L  P  S  L  E  E  L  E  A  Y  A  V  E  Q  W  E  :  C  F  L  L  N  L  I  S  S  S  E  A  G  K  T  T  N  I  S  S  S  M  M  K  I  F  Q  R  G  L  L  S  Q  R :   D  D  R  E  P  P  R  L  T  E  S  G  F  Q  F  L  :  L  M  D  T  N  A  Q  L  W  Y  I  I  R  E  Y  I  T  N  A  E  :  E  R  G  V  D  S  A  D  L  I  A  F  L  L  E  L  S  F  H  V  T  G  K  :  A  Y  N  T  N  T  I  T  D  L  Q  R  S  I  I  K  D  L  S  D  L  G  L  V  K  L  Q  Q  :  G  R  K  E  S  W  F  I  P  T  K  L  A  T  N  L  S  I  S  L  A  D  T  T  T  R  K  Q  :  G  F  I  V  I  E  T  N  F  R  L  Y  A  Y  S  T  S  K  L  H  C  E  I  L  R  L  F  A  R :   V  E  Y  Q  L  P  N  L  I  V  G  A  I  N  K  E  S  L  Y  K  A  F  Q  N  G  I  T  S  E  Q  :  I  V  S  F  L  Q  Q  N  A  H  P  R  V  A  E  R  I  P  S  V  P  E  N  V  T  D  Q  :  I  R  L  W  E  S  D  L  N  R  V  E  M  T  P  A  H  F  Y  D  E  F  P  S  K  :  D  V  F  E  A  A  C  D  F  A  R  E  Y  G  G  L  L  W  E  D  S  K  R  M  R  L  V  V  K  A  D  I  L  A  E  M  K  E  F  L  R  R  Q  K  Q  *  L  F  F  A  Y  C  L  H  L  N  E  G  F  H  Q  L  C  P  S  I  Y  L  F  P  T  *  L  V  H  E  F  C  C  G  C  I  V  F  H  C  A  S  I  S  F  F  R  H  L  V  M  L  Y  *  *  W  D  Y  K  S  S  S  K  L  L  I  A  </second_frame>
            <third_frame>   C  I  S  R  N  *  G  R  I  I  I  I  Q  Q  Q  L  K  P  *  I  E  K  L  K  Y  *  K  P  L  F  D  L  *  Q  Q  C  R  K  *  R  S  S  P  G  I  S  W  T  W  W  L  H  C  L  S  *  N  S  T  C  F  T  T  I  P  L  S  V  K  P  F  L   : D  R  Y  L  P  *  R  R  S  M  C  C  K  C  C  I  *  T  Y  Q  L  Q  P  S  R  W  R  S  G  C  F  Q  M  D  S  Q  S  I  K  L  P  L  I  D  *  Y  S  *  E  *  *  Q  K  H  L  T   : G  K  R  K  P  C  I  N  *  T  Q  N  F  N  L  I  F  R  S  I  *  S  M   : V  E  S  Y  Q  G  N  Q  C  L  L  I  S  L  *  G  F  L  A  W  R  S  *  R  H  M  L  S  N  N  G  S :   A  F  C  *  T  L  *  A  P  V  K  L  E  R  P  Q  T  *  A  L  R  *  *  K  S  S  S  V  D  F  *  V  R   : E  T  I  E  N  L  Q  G  *  L  K  V  G  S  N  S  C :   *  W  T  Q  M  H  S  F  G  T  S  S  G  S  T  *  Q  M  L  R :   S  E  E  W  I  Q  Q  I  L  L  H  F  F  W  S  *  A  F  M  L  L  A  R :   H  T  I  Q  T  Q  *  L  I  S  R  E  V  *  L  R  T  F  Q  I  W  D  W  S  S  C  S  R :   E  G  K  R  V  G  L  F  R  P  N  W  R  P  T  C  Q  L  A  *  R  I  Q  L  L  G  N  R :   V  L  S  L  L  K  Q  T  S  D  C  M  H  I  Q  H  Q  N  C  T  V  R  S  Y  A  F  L  Q   : G  W  N  T  S  F  Q  I  S  L  L  V  L  L  I  K  R  V  Y  I  K  L  F  K  T  A  L  L  L  S  R :   *  F  L  S  F  S  R  M  H  I  L  G  L  P  R  E  Y  H  L  C  R  R  M  L  L  I  R :   L  D  C  G  N  L  I  *  I  G  L  R  *  R  Q  P  T  S  T  M  N  S  L  L  K :   M  S  L  R  L  P  V  I  L  P  E  N  M  E  D  Y  C  G  R  T  L  S  A  C  V  S  L  L  K  L  I  F  *  P  R  *  R  N  F  F  V  V  K  S  N  N  S  S  L  H  T  V  F  I  *  M  K  G  F  I  S  Y  V  H  L  Y  I  Y  S  Q  L  N  L  Y  M  N  F  V  V  G  V  L  Y  F  I  V  L  R  F  P  S  F  D  T  L  *  C  C  T  N  N  G  T  T  N  H  R  Q  N  Y  *  *  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4933" stop="5057"/>
                    <exon start="5530" stop="5697"/>
                    <exon start="6364" stop="6432"/>
                    <exon start="7001" stop="7094"/>
                    <exon start="7263" stop="7363"/>
                    <exon start="7495" stop="7543"/>
                    <exon start="7622" stop="7681"/>
                    <exon start="8358" stop="8426"/>
                    <exon start="8738" stop="8821"/>
                    <exon start="8917" stop="9000"/>
                    <exon start="9340" stop="9425"/>
                    <exon start="9774" stop="9864"/>
                    <exon start="10620" stop="10700"/>
                    <exon start="10952" stop="11026"/>
                    <exon start="11122" stop="11259"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITTMPQVKIVARNFMDMVASLPVMKLDMLYDNSFICEAILRSLPPLAKKYVLQMLYIDIPITAKSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFDRKKEAMYQLNPKFQFNLQKHIVYGGVLPREPMPSNITVRLPSLEELEAYAVEQWECFLLNLISSSEAGKTTNISSSMMKIFQRGLLSQRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTTRKQGFIVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFQNGITSEQIVSFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILAEMKEFLRRQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11759" PGL_stop="13622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11759" e_stop="12158"/>
            <exon e_start="12251" e_stop="12350"/>
            <exon e_start="12467" e_stop="12547"/>
            <exon e_start="12893" e_stop="12997"/>
            <exon e_start="13089" e_stop="13622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.354" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="11759" e_stop="12158" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12159" i_stop="12250" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12251" e_stop="12350" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12351" i_stop="12466" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12467" e_stop="12547" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="12548" i_stop="12892" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12893" e_stop="12997" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.354">
            <gDNA_intron_boundary i_start="12998" i_stop="13088" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="13089" e_stop="13622" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11759" stop="12158"/>
              <exon start="12251" stop="12350"/>
              <exon start="12467" stop="12547"/>
              <exon start="12893" stop="12997"/>
              <exon start="13089" stop="13622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGGAAATTTCTTCTGAGCCTATCTGGGGAAATTTTTGCATATCTAGGCATGTCACCATCACTATTATTTCTTTTAAAAAAATCAACAATCTAAACAGTTATAAATCACATCAATATGCTTTCTAATGAACTCTTCCAAGCACCCTTAAAAACATAACAACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG : GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT : TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG : GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG : GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTCTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTCTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTCTTTGGACTTCTTCATATATTAAACTCTCCTAATG</gDNA_template>
            <first_frame> S  W  K  F  L  L  S  L  S  G  E  I  F  A  Y  L  G  M  S  P  S  L  L  F  L  L  K  K  S  T  I  *  T  V  I  N  H  I  N  M  L  S  N  E  L  F  Q  A  P  L  K  T  *  Q  Q  F  T  *  Q  V  L  F  Y  F  P  S  *  V  N  E  T  A  P  V  *  N  S  R  W  *  N  L  *  R  V  T  C  D  Y  P  S  R  S  Q  T  *  Q  *  D  L  W  A  L  Q  C  S  S  M  V  Y  G  *  S  E  F  G  S  A  M  L  P  T  H  P  H  P  L  I  M  L  N  F  L   : G  L  S  M  H  F  L  V  L  A  L  L  C  V  Q  S  L  S  L  V  M  L  Q  Q  A  L  P  I  P  I  A  S  H  F :   I  C  S  S  Y  L  C  F  F  *  Q  R  L  Q  L  Q  L  M  F  S  *  T  L  I  G  R  R :   I  C  L  K  I  H  Q  E  G  L  M  I  S  R  I  L  W  T  R  I  A  M  S  A  N  G  L  P  C  F  V  F  *  H  R :   D  V  V  S  Y  W  L  Q  F  *  E  L  L  G  K  L  R  K  I  V  M  S  M  K  V  N  M  Q  N  H  Q  L  H  F  F  A  L  R  N  C  L  Q  I  L  C  I  H  M  L  L  V  N  Q  F  I  L  N  H  I  L  P  T  R  M  F  E  F  W  K  T  I  G  L  I  P  L  *  N  Y  E  I  L  K  P  L  F  L  A  Y  Y  V  I  E  V  C  R  S  *  S  E  *  S  Y  P  L  W  K  N  M  L  C  S  F  S  N  C  L  R  M  S  F  V  N  Q  K  Q  M  R  P  F  Y  V  *  L  R  L  *  V  L  Q  L  L  C  F  *  V  V  S  F  L  F  I  T  M  N  N  D  I  T  L  F  M  H  V  E  L  L  W  T  S  S  Y  I  K  L  S  *   </first_frame>
            <second_frame>  L  G  N  F  F  *  A  Y  L  G  K  F  L  H  I  *  A  C  H  H  H  Y  Y  F  F  *  K  N  Q  Q  S  K  Q  L  *  I  T  S  I  C  F  L  M  N  S  S  K  H  P  *  K  H  N  N  N  L  P  S  K  C  S  S  I  S  P  P  K  *  M  K  Q  L  L  F  K  I  Q  D  G  K  T  C  K  E  L  P  A  I  I  P  Q  D  H  K  H  N  N  R  I  Y  G  H  C  N  A  H  L  W  C  M  D  D  Q  S  L  A  A  R  C  C  Q  L  T  L  I  P  *  L  C  S  I  S  L  :  V  Y  P  C  I  S  W  C  W  H  C  F  V  C  N  H  F  P  W  S  C  C  S  K  H  C  Q  F  L  L  P  L  I   : L  Y  V  L  H  I  C  A  S  F  S  R  D  C  N  Y  S  *  C  F  L  E  L  *  L  G  E   : G  F  A  *  R  S  I  R  K  V  *  *  F  Q  G  F  C  G  L  E  *  R  C  L  P  M  D  Y  P  A  L  C  S  N  T   : G  M  L  Y  L  I  G  Y  N  S  K  N  S  W  A  S  *  G  K  *  S  *  V  *  R  *  I  C  R  T  I  S  S  T  S  S  P  S  A  T  A  S  K  S  S  V  S  I  C  Y  W  *  T  S  S  Y  *  T  T  F  C  L  Q  E  C  L  S  F  G  R  Q  L  V  *  S  L  C  K  T  M  K  S  *  N  L  S  F  W  L  I  M  L  L  K  S  A  E  V  E  V  N  E  V  I  L  Y  G  K  I  C  Y  V  A  S  P  I  A  *  E  *  A  L  L  I  R  N  R  *  D  H  F  M  Y  N  *  D  C  E  F  C  N  F  Y  V  F  E  W  Y  H  F  C  L  L  Q  *  T  M  I  L  H  C  L  C  M  L  N  F  F  G  L  L  H  I  L  N  S  P  N  </second_frame>
            <third_frame>   L  E  I  S  S  E  P  I  W  G  N  F  C  I  S  R  H  V  T  I  T  I  I  S  F  K  K  I  N  N  L  N  S  Y  K  S  H  Q  Y  A  F  *  *  T  L  P  S  T  L  K  N  I  T  T  I  Y  L  A  S  A  L  L  F  P  L  L  S  E  *  N  S  S  C  L  K  F  K  M  V  K  L  V  K  S  Y  L  R  L  S  L  K  I  T  N  I  T  I  G  F  M  G  I  A  M  L  I  Y  G  V  W  M  I  R  V  W  Q  R  D  A  A  N  S  P  S  S  P  D  Y  A  Q  F  P  W :   F  I  H  A  F  L  G  V  G  T  A  L  C  A  I  T  F  L  G  H  V  A  A  S  T  A  N  S  Y  C  L  S  F  :  Y  M  F  F  I  F  V  L  L  L  A  E  I  A  I  T  A  D  V  F  L  N  S  D  W  E  K  :  D  L  P  E  D  P  S  G  R  F  D  D  F  K  D  F  V  D  S  N  S  D  V  C  Q  W  I  T  L  L  C  V  L  T  Q  :  G  C  C  I  L  L  A  T  I  L  R  T  L  G  Q  V  K  E  N  S  H  E  Y  E  G  E  Y  A  E  P  S  A  P  L  L  R  P  P  Q  L  P  P  N  P  L  Y  P  Y  V  I  G  E  P  V  H  I  E  P  H  S  A  Y  K  N  V  *  V  L  E  D  N  W  F  D  P  F  V  K  L  *  N  L  E  T  S  L  F  G  L  L  C  Y  *  S  L  Q  K  L  K  *  M  K  L  S  F  M  E  K  Y  A  M  *  L  L  Q  L  L  K  N  E  L  C  *  S  E  T  D  E  T  I  L  C  I  I  K  I  V  S  F  A  T  F  M  F  L  S  G  I  I  F  V  Y  Y  N  E  Q  *  Y  Y  I  V  Y  A  C  *  T  S  L  D  F  F  I  Y  *  T  L  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11968" stop="12158"/>
                    <exon start="12251" stop="12350"/>
                    <exon start="12467" stop="12547"/>
                    <exon start="12893" stop="12997"/>
                    <exon start="13089" stop="13286"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSCLKFKMVKLVKSYLRLSLKITNITIGFMGIAMLIYGVWMIRVWQRDAANSPSSPDYAQFPWFIHAFLGVGTALCAITFLGHVAASTANSYCLSFYMFFIFVLLLAEIAITADVFLNSDWEKDLPEDPSGRFDDFKDFVDSNSDVCQWITLLCVLTQGCCILLATILRTLGQVKENSHEYEGEYAEPSAPLLRPPQLPPNPLYPYVIGEPVHIEPHSAYKNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18352" PGL_stop="13728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18352" e_stop="17984"/>
            <exon e_start="16903" e_stop="16753"/>
            <exon e_start="16650" e_stop="16584"/>
            <exon e_start="16482" e_stop="16248"/>
            <exon e_start="14311" e_stop="13728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.970"/>
          <exon-intron don_prob="0.969" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.764" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="18352" e_stop="17984" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16903" e_stop="16753" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16650" e_stop="16584" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.834">
            <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16482" e_stop="16248" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.764">
            <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="14311" e_stop="13728" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18352" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16248"/>
              <exon start="14311" stop="13728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGGGATAAGAACTCTTACATTTTTTTTTCTCTTTCTTCATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT : GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG : GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG : CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG : GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCAATCTG</gDNA_template>
            <first_frame> P  G  I  R  T  L  T  F  F  F  L  F  L  H  S  V  Q  *  K  K  L  *  K  R  K  K  K  Q  S  H  Q  N  L  G  K  I  L  T  R  E  S  N  R  F  *  F  E  E  K  K  G  W  C  *  S  G  F  V  M  V  R  S  V  W  L  *  V  K  F  V  F  S  F  L  G  F  G  W  L  E  *  R  A  K  E  K  E  N  C  R  Y  E  *  R  R  N  W  N  W  R  A  N  A  K  V  F  *  G  L  S  *  S  S  *  S  *  Y  S  A  C  *  Y  S  :  G  I  *  L  S  P  R  V  R  W  G  L  P  T  D  E  N  V  L  Q  S  S  S  A  P  V  P  F  L  S  P  V  D  *  L  P  P  C  W  C  T  W  I  V  E  N  S  Y  L  Q   : G  L  C  *  W  H  H  N  H  V  S  S  *  K  E  S  K  H  *  G  V  L  C :   C  Y  L  S  L  L  T  S  T  *  K  R  C  Y  G  F  R  R  Q  K  A  K  S  S  L  P  G  E  I  Q  E  K  R  *  *  G  L  Q  T  I  F  *  L  *  H  *  K  G  R  G  M  W  N  L  H  G  N  E  Q  Q  N  C  P  S  Q  M  Q  S  R  P  V  F  E  M  L  S  *  M  :  A  F  K  V  T  I  L  P  F  L  P  R  *  P  *  K  G  *  L  Q  *  S  V  G  I  H  G  Q  Q  R  H  R  G  H  V  N  D  N  K  G  E  S  E  A  A  I  H  V  Y  R  *  A  T  L  D  R  A  R  *  C  F  *  S  L  *  Y  S  Y  K  V  D  D  Q  C  F  H  W  G  I  E  S  Y  *  R  *  S  N  W  S  R  *  I  *  K  C  R  W  I  T  L  S  P  F  L  I  *  K  N  P  T  E  S  L  W  C  R  G  *  S  *  V  R  *  D  *  P  K  K  N  G  A  F  *  L  H  L  L  I  C  T  C  L  Y  S  S  S  F  T  S  *  K  H  N  C  C  L  F  S  D  L  Q  V  C  H  E  Y  Q  H  L  S  F  L  K  C  R  V  V  W  L  L  F  I  R  M  Y  N  I  *  C  I  *  F  P  I   </first_frame>
            <second_frame>  Q  G  *  E  L  L  H  F  F  F  S  F  F  I  L  Y  S  K  R  S  C  E  K  E  R  R  N  R  V  I  K  I  W  G  K  F  L  Q  E  N  R  I  D  F  D  L  R  K  K  R  G  G  V  E  V  D  L  *  W  *  G  V  F  G  C  E  *  N  S  F  F  L  F  W  V  L  G  G  W  S  K  E  R  K  R  R  K  I  A  G  M  N  R  G  G  I  G  I  G  G  P  M  R  K  S  F  K  D  S  L  K  V  L  E  A  D  I  Q  H  A  N  T  L :   A  S  D  F  P  R  E  Y  D  G  A  C  L  Q  M  R  M  S  Y  S  P  A  A  H  L  F  L  F  L  V  Q  W  T  D  C  H  L  A  G  A  L  G  L  L  R  I  L  I  Y  K  :  V  Y  V  D  G  T  T  T  M  S  V  H  E  R  K  A  S  I  R  E  F  Y   : A  V  I  Y  P  S  L  L  Q  L  E  R  G  V  T  D  S  E  D  K  K  Q  K  A  V  C  Q  E  R  Y  R  R  R  D  D  E  D  Y  R  Q  S  S  D  S  D  I  E  R  E  E  E  C  G  I  C  M  E  M  N  S  K  I  V  L  P  K  C  N  H  A  L  C  L  K  C  Y  R  E  W :   R  S  R  S  Q  S  C  P  F  C  R  D  S  L  K  R  V  N  S  S  D  L  W  V  Y  M  D  N  K  D  I  V  D  M  S  M  I  T  R  E  N  L  R  R  L  F  M  F  I  D  K  L  P  L  I  V  P  D  N  V  F  D  H  Y  D  T  H  I  R  *  M  I  N  A  S  I  G  G  L  N  H  T  K  D  K  V  I  G  L  A  R  F  R  N  A  G  G  L  L  Y  H  L  S  *  F  R  R  T  R  P  S  H  C  G  A  G  V  E  A  K  L  D  K  I  S  Q  K  K  M  E  L  F  N  C  I  S  *  F  V  H  A  C  T  V  P  V  L  L  L  E  N  T  I  V  V  C  F  L  I  F  K  Y  A  M  N  T  S  I  *  A  F  S  S  A  E  L  Y  G  C  Y  L  *  E  C  I  I  Y  D  V  F  S  F  Q  S  </second_frame>
            <third_frame>   R  D  K  N  S  Y  I  F  F  S  L  S  S  F  C  T  V  K  E  A  V  K  K  K  E  E  T  E  S  S  K  F  G  E  N  S  Y  K  R  I  E  *  I  L  I  *  G  K  K  G  V  V  L  K  W  I  C  D  G  K  E  C  L  V  V  S  K  I  R  F  F  F  F  G  F  W  V  V  G  V  K  S  E  R  E  G  K  L  Q  V  *  I  E  E  E  L  E  L  E  G  Q  C  E  S  L  L  R  T  L  L  K  F  L  K  L  I  F  S  M  L  I  L   : W  H  L  T  F  P  E  S  T  M  G  P  A  Y  R  *  E  C  P  T  V  Q  Q  R  T  C  S  F  S  *  S  S  G  L  I  A  T  L  L  V  H  L  D  C  *  E  F  L  F  T  R :   F  M  L  M  A  P  Q  P  C  Q  F  M  K  G  K  Q  A  L  G  S  S  M  :  L  L  F  I  P  P  Y  F  N  L  K  E  V  L  R  I  Q  K  T  K  S  K  K  Q  F  A  R  R  D  T  G  E  E  M  M  R  I  T  D  N  L  L  T  L  T  L  K  G  K  R  N  V  E  S  A  W  K  *  T  A  K  L  S  F  P  N  A  I  T  P  C  V  *  N  A  I  V  N   : G  V  Q  G  H  N  P  A  L  F  A  A  I  A  L  K  G  L  T  P  V  I  C  G  Y  T  W  T  T  K  T  S  W  T  C  Q  *  *  Q  G  R  I  *  G  G  Y  S  C  L  *  I  S  Y  P  *  S  C  Q  I  M  F  L  I  T  M  I  L  I  *  G  R  *  S  M  L  P  L  G  D  *  I  I  L  K  I  K  *  L  V  S  L  D  L  E  M  Q  V  D  Y  F  I  T  F  P  D  L  E  E  P  D  R  V  I  V  V  Q  G  L  K  L  S  *  I  R  L  A  K  K  K  W  S  F  L  I  A  S  P  N  L  Y  M  P  V  Q  F  Q  F  Y  F  L  K  T  Q  L  L  F  V  F  *  S  S  S  M  P  *  I  P  A  F  E  L  S  Q  V  Q  S  C  M  V  A  I  Y  K  N  V  *  Y  M  M  Y  L  V  S  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18150" stop="17984"/>
                    <exon start="16903" stop="16753"/>
                    <exon start="16650" stop="16584"/>
                    <exon start="16482" stop="16248"/>
                    <exon start="14311" stop="14101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFLFWVLGGWSKERKRRKIAGMNRGGIGIGGPMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSVHERKASIREFYAVIYPSLLQLERGVTDSEDKKQKAVCQERYRRRDDEDYRQSSDSDIEREEECGICMEMNSKIVLPKCNHALCLKCYREWRSRSQSCPFCRDSLKRVNSSDLWVYMDNKDIVDMSMITRENLRRLFMFIDKLPLIVPDNVFDHYDTHIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18313" e_stop="17984"/>
            <exon e_start="16903" e_stop="16839"/>
            <exon e_start="16604" e_stop="16584"/>
            <exon e_start="16482" e_stop="16067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.834" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="18313" e_stop="17984" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16903" e_stop="16839" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16838" i_stop="16605" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16604" e_stop="16584" e_length="21"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.834">
            <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="16482" e_stop="16067" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18313" stop="17984"/>
              <exon start="16903" stop="16839"/>
              <exon start="16604" stop="16584"/>
              <exon start="16482" stop="16067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT : GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAG : CAAGCATTAGGGAGTTCTATG : CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGG</gDNA_template>
            <first_frame> H  S  V  Q  *  K  K  L  *  K  R  K  K  K  Q  S  H  Q  N  L  G  K  I  L  T  R  E  S  N  R  F  *  F  E  E  K  K  G  W  C  *  S  G  F  V  M  V  R  S  V  W  L  *  V  K  F  V  F  S  F  L  G  F  G  W  L  E  *  R  A  K  E  K  E  N  C  R  Y  E  *  R  R  N  W  N  W  R  A  N  A  K  V  F  *  G  L  S  *  S  S  *  S  *  Y  S  A  C  *  Y  S  :  G  I  *  L  S  P  R  V  R  W  G  L  P  T  D  E  N  V  L  Q  S  S :   K  H  *  G  V  L  C :   C  Y  L  S  L  L  T  S  T  *  K  R  C  Y  G  F  R  R  Q  K  A  K  S  S  L  P  G  E  I  Q  E  K  R  *  *  G  L  Q  T  I  F  *  L  *  H  *  K  G  R  G  M  W  N  L  H  G  N  E  Q  Q  N  C  P  S  Q  M  Q  S  R  P  V  F  E  M  L  S  *  M  V  C  L  I  L  Q  F  V  *  D  R  R  C  V  L  S  L  T  T  I  F  R  S  L  S  S  H  A  N  S  T  F  P  L  H  S  F  *  P  P  S  Y  T  *  M  F  T  E  Q  L  S  S  A  S  W  C  E  V  L  W  </first_frame>
            <second_frame>  I  L  Y  S  K  R  S  C  E  K  E  R  R  N  R  V  I  K  I  W  G  K  F  L  Q  E  N  R  I  D  F  D  L  R  K  K  R  G  G  V  E  V  D  L  *  W  *  G  V  F  G  C  E  *  N  S  F  F  L  F  W  V  L  G  G  W  S  K  E  R  K  R  R  K  I  A  G  M  N  R  G  G  I  G  I  G  G  P  M  R  K  S  F  K  D  S  L  K  V  L  E  A  D  I  Q  H  A  N  T  L :   A  S  D  F  P  R  E  Y  D  G  A  C  L  Q  M  R  M  S  Y  S  P   : A  S  I  R  E  F  Y   : A  V  I  Y  P  S  L  L  Q  L  E  R  G  V  T  D  S  E  D  K  K  Q  K  A  V  C  Q  E  R  Y  R  R  R  D  D  E  D  Y  R  Q  S  S  D  S  D  I  E  R  E  E  E  C  G  I  C  M  E  M  N  S  K  I  V  L  P  K  C  N  H  A  L  C  L  K  C  Y  R  E  W  Y  V  *  F  C  S  L  S  E  I  E  D  V  C  *  V  *  L  L  Y  S  D  L  Y  H  P  T  P  T  L  H  F  L  C  T  L  S  N  P  L  H  T  L  E  C  S  Q  N  S  C  R  V  L  P  G  V  R  F  C  G </second_frame>
            <third_frame>   F  C  T  V  K  E  A  V  K  K  K  E  E  T  E  S  S  K  F  G  E  N  S  Y  K  R  I  E  *  I  L  I  *  G  K  K  G  V  V  L  K  W  I  C  D  G  K  E  C  L  V  V  S  K  I  R  F  F  F  F  G  F  W  V  V  G  V  K  S  E  R  E  G  K  L  Q  V  *  I  E  E  E  L  E  L  E  G  Q  C  E  S  L  L  R  T  L  L  K  F  L  K  L  I  F  S  M  L  I  L   : W  H  L  T  F  P  E  S  T  M  G  P  A  Y  R  *  E  C  P  T  V  Q  :  Q  A  L  G  S  S  M  :  L  L  F  I  P  P  Y  F  N  L  K  E  V  L  R  I  Q  K  T  K  S  K  K  Q  F  A  R  R  D  T  G  E  E  M  M  R  I  T  D  N  L  L  T  L  T  L  K  G  K  R  N  V  E  S  A  W  K  *  T  A  K  L  S  F  P  N  A  I  T  P  C  V  *  N  A  I  V  N  G  M  F  N  F  A  V  C  L  R  *  K  M  C  V  K  F  N  Y  Y  I  Q  I  S  I  I  P  R  Q  L  Y  I  S  F  A  L  F  L  T  P  F  I  H  L  N  V  H  R  T  A  V  E  C  F  L  V  *  G  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18150" stop="17984"/>
                    <exon start="16903" stop="16839"/>
                    <exon start="16604" stop="16584"/>
                    <exon start="16482" stop="16238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFLFWVLGGWSKERKRRKIAGMNRGGIGIGGPMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPASIREFYAVIYPSLLQLERGVTDSEDKKQKAVCQERYRRRDDEDYRQSSDSDIEREEECGICMEMNSKIVLPKCNHALCLKCYREWYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29431" PGL_stop="32313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29431" e_stop="29714"/>
            <exon e_start="31636" e_stop="32313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.884" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29431" e_stop="29714" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.884" acc_prob="0.972">
            <gDNA_intron_boundary i_start="29715" i_stop="31635" i_length="1921"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31636" e_stop="32313" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29431" stop="29714"/>
              <exon start="31636" stop="32313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAACCAGAGAGATTGGATTCTTGTCATAATAATCTTCAATTGAATCAATGCTAAATGAATACCCTTATCACAAAAAGATTCAATCTTCAAATTTTCCCTCAAAATTTTCTCTCTCACTTTCCACAACTTTCCAAGAAAACCCCACATAACACTCATCCATTTCCAAGAAAATTTTCATTTACTGCCAAGACTCTAACTTTATGCTCTGTTGCAGCTTCTGAATCATTGTCTTGTGGTGGCTGGGATGACCCAAGTTTCATTGGTGATCCAATTAGCCCTG : GGTTCTGCACGTGATGCCGACAAAGTTTTCTTGGCTGCAATTGATAAGTTCGATGCAATGATCTCCAGAGGAAATGTATATGCACCTGATGGTATGAGAAATAACTATTCGTCCATACTGTAAATTTAGAGTCTTTACTAATCCATGGTTGCCTCTTTTTTTTTTTTTTTTTTTGTCTTTACATTTTAATAAGAGAAGTAGGAAGAAGTATTTTAGAATCCTGGGCTTATAATCATTCCAGCAATGACCGTTGTTTAACTGTTCTTCTTTCTCTCTTTTGCGGTGGAGCTACAAAATCTATCAACAATAAAGGAGCTCGCCCTGCCACTTCTTCGTCATCAGTTCCTAATGTTTTGATTAGGAACTAATGAAAGGAGAAAGTTGGTGTCATCTCTGGGCCAGTTGATGATGTATGAGCTTTTGATATTCTCTCGTCTCCTTTTGCTTTGCTAAAAGTTGAACTGGTAAAAGTGATGTGTCATCTTTGGCGAACTTAAAGTTAGATAAGAACAAATGAACTAGTAAGTGCGCGTGGAAAGCAAATATCATCCCCCTCTCCTCGCATTTATGCTGCTCATTGTTTTAATAATAATAGTAATGAGCTGGTCATTATATAGCTAGGCCTTAATGGATGAGTAGCATCAGCATCATTAAGATGGAGTTACTATTTCACAAAGA</gDNA_template>
            <first_frame> R  K  T  R  E  I  G  F  L  S  *  *  S  S  I  E  S  M  L  N  E  Y  P  Y  H  K  K  I  Q  S  S  N  F  P  S  K  F  S  L  S  L  S  T  T  F  Q  E  N  P  T  *  H  S  S  I  S  K  K  I  F  I  Y  C  Q  D  S  N  F  M  L  C  C  S  F  *  I  I  V  L  W  W  L  G  *  P  K  F  H  W  *  S  N  *  P  W :   V  L  H  V  M  P  T  K  F  S  W  L  Q  L  I  S  S  M  Q  *  S  P  E  E  M  Y  M  H  L  M  V  *  E  I  T  I  R  P  Y  C  K  F  R  V  F  T  N  P  W  L  P  L  F  F  F  F  F  L  S  L  H  F  N  K  R  S  R  K  K  Y  F  R  I  L  G  L  *  S  F  Q  Q  *  P  L  F  N  C  S  S  F  S  L  L  R  W  S  Y  K  I  Y  Q  Q  *  R  S  S  P  C  H  F  F  V  I  S  S  *  C  F  D  *  E  L  M  K  G  E  S  W  C  H  L  W  A  S  *  *  C  M  S  F  *  Y  S  L  V  S  F  C  F  A  K  S  *  T  G  K  S  D  V  S  S  L  A  N  L  K  L  D  K  N  K  *  T  S  K  C  A  W  K  A  N  I  I  P  L  S  S  H  L  C  C  S  L  F  *  *  *  *  *  *  A  G  H  Y  I  A  R  P  *  W  M  S  S  I  S  I  I  K  M  E  L  L  F  H  K   </first_frame>
            <second_frame>  E  K  P  E  R  L  D  S  C  H  N  N  L  Q  L  N  Q  C  *  M  N  T  L  I  T  K  R  F  N  L  Q  I  F  P  Q  N  F  L  S  H  F  P  Q  L  S  K  K  T  P  H  N  T  H  P  F  P  R  K  F  S  F  T  A  K  T  L  T  L  C  S  V  A  A  S  E  S  L  S  C  G  G  W  D  D  P  S  F  I  G  D  P  I  S  P   : G  F  C  T  *  C  R  Q  S  F  L  G  C  N  *  *  V  R  C  N  D  L  Q  R  K  C  I  C  T  *  W  Y  E  K  *  L  F  V  H  T  V  N  L  E  S  L  L  I  H  G  C  L  F  F  F  F  F  F  C  L  Y  I  L  I  R  E  V  G  R  S  I  L  E  S  W  A  Y  N  H  S  S  N  D  R  C  L  T  V  L  L  S  L  F  C  G  G  A  T  K  S  I  N  N  K  G  A  R  P  A  T  S  S  S  S  V  P  N  V  L  I  R  N  *  *  K  E  K  V  G  V  I  S  G  P  V  D  D  V  *  A  F  D  I  L  S  S  P  F  A  L  L  K  V  E  L  V  K  V  M  C  H  L  W  R  T  *  S  *  I  R  T  N  E  L  V  S  A  R  G  K  Q  I  S  S  P  S  P  R  I  Y  A  A  H  C  F  N  N  N  S  N  E  L  V  I  I  *  L  G  L  N  G  *  V  A  S  A  S  L  R  W  S  Y  Y  F  T  K  </second_frame>
            <third_frame>   K  N  Q  R  D  W  I  L  V  I  I  I  F  N  *  I  N  A  K  *  I  P  L  S  Q  K  D  S  I  F  K  F  S  L  K  I  F  S  L  T  F  H  N  F  P  R  K  P  H  I  T  L  I  H  F  Q  E  N  F  H  L  L  P  R  L  *  L  Y  A  L  L  Q  L  L  N  H  C  L  V  V  A  G  M  T  Q  V  S  L  V  I  Q  L  A  L  :  G  S  A  R  D  A  D  K  V  F  L  A  A  I  D  K  F  D  A  M  I  S  R  G  N  V  Y  A  P  D  G  M  R  N  N  Y  S  S  I  L  *  I  *  S  L  Y  *  S  M  V  A  S  F  F  F  F  F  F  V  F  T  F  *  *  E  K  *  E  E  V  F  *  N  P  G  L  I  I  I  P  A  M  T  V  V  *  L  F  F  F  L  S  F  A  V  E  L  Q  N  L  S  T  I  K  E  L  A  L  P  L  L  R  H  Q  F  L  M  F  *  L  G  T  N  E  R  R  K  L  V  S  S  L  G  Q  L  M  M  Y  E  L  L  I  F  S  R  L  L  L  L  C  *  K  L  N  W  *  K  *  C  V  I  F  G  E  L  K  V  R  *  E  Q  M  N  *  *  V  R  V  E  S  K  Y  H  P  P  L  L  A  F  M  L  L  I  V  L  I  I  I  V  M  S  W  S  L  Y  S  *  A  L  M  D  E  *  H  Q  H  H  *  D  G  V  T  I  S  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31740" stop="32003"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFVHTVNLESLLIHGCLFFFFFFCLYILIREVGRSILESWAYNHSSNDRCLTVLLSLFCGGATKSINNKGARPATSSSSVPNVLIRN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29489" stop="29714"/>
                    <exon start="31636" stop="31649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNTLITKRFNLQIFPQNFLSHFPQLSKKTPHNTHPFPRKFSFTAKTLTLCSVAASESLSCGGWDDPSFIGDPISPGFCT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29631" stop="29714"/>
                    <exon start="31636" stop="31758"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYALLQLLNHCLVVAGMTQVSLVIQLALGSARDADKVFLAAIDKFDAMISRGNVYAPDGMRNNYSSIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30686" e_stop="31103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="30686" e_stop="31103" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30686" stop="31103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGTTTAGCTGATTCTATTGATTTTGGCGTCAGTATGGAGCAAAGCAATACTGAAGCATCTTCGTTGCATGAAAAGGACGTCGAGAATTTTGAAGGAGTAAGGAGCCATTTTGGTGGAAAAGAAAATGATGAAGACACCTACAGTCATTTTCTTGGAGAAGAGATGAGAAACCCTGAAAAGGAACCCTCCATGGGTAGAGATGAGGCCTCAAATGAATGTGAATCTGGTCACTCTCCATCTTCAGGAGGTTCCATTGATTTGCAATTTAATAAGTACCTTACTGAGGCAAATATTCTAGTACAAGAAGCAAAGGACTGTTTAAGGAGGCAAGACGGCGACAAGCATGCTGAGAATGCGTTTTACGAGTCTGCTGTATTGCTCTCAAAAGCTATAGATATCCGCCCCATGAGTTTAT</gDNA_template>
            <first_frame> D  G  L  A  D  S  I  D  F  G  V  S  M  E  Q  S  N  T  E  A  S  S  L  H  E  K  D  V  E  N  F  E  G  V  R  S  H  F  G  G  K  E  N  D  E  D  T  Y  S  H  F  L  G  E  E  M  R  N  P  E  K  E  P  S  M  G  R  D  E  A  S  N  E  C  E  S  G  H  S  P  S  S  G  G  S  I  D  L  Q  F  N  K  Y  L  T  E  A  N  I  L  V  Q  E  A  K  D  C  L  R  R  Q  D  G  D  K  H  A  E  N  A  F  Y  E  S  A  V  L  L  S  K  A  I  D  I  R  P  M  S  L  </first_frame>
            <second_frame>  M  V  *  L  I  L  L  I  L  A  S  V  W  S  K  A  I  L  K  H  L  R  C  M  K  R  T  S  R  I  L  K  E  *  G  A  I  L  V  E  K  K  M  M  K  T  P  T  V  I  F  L  E  K  R  *  E  T  L  K  R  N  P  P  W  V  E  M  R  P  Q  M  N  V  N  L  V  T  L  H  L  Q  E  V  P  L  I  C  N  L  I  S  T  L  L  R  Q  I  F  *  Y  K  K  Q  R  T  V  *  G  G  K  T  A  T  S  M  L  R  M  R  F  T  S  L  L  Y  C  S  Q  K  L  *  I  S  A  P  *  V  Y </second_frame>
            <third_frame>   W  F  S  *  F  Y  *  F  W  R  Q  Y  G  A  K  Q  Y  *  S  I  F  V  A  *  K  G  R  R  E  F  *  R  S  K  E  P  F  W  W  K  R  K  *  *  R  H  L  Q  S  F  S  W  R  R  D  E  K  P  *  K  G  T  L  H  G  *  R  *  G  L  K  *  M  *  I  W  S  L  S  I  F  R  R  F  H  *  F  A  I  *  *  V  P  Y  *  G  K  Y  S  S  T  R  S  K  G  L  F  K  E  A  R  R  R  Q  A  C  *  E  C  V  L  R  V  C  C  I  A  L  K  S  Y  R  Y  P  P  H  E  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30686" stop="31102"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGLADSIDFGVSMEQSNTEASSLHEKDVENFEGVRSHFGGKENDEDTYSHFLGEEMRNPEKEPSMGRDEASNECESGHSPSSGGSIDLQFNKYLTEANILVQEAKDCLRRQDGDKHAENAFYESAVLLSKAIDIRPMSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29978" e_stop="30527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29978" e_stop="30527" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29978" stop="30527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTGGTGGATTTTCTTAGTGGGGTTGATGTAGAGATTGGTAATTTGAAGAAGGGTGTTAGGAAAGGAATTGAGAATAATCAAATTACTGTGGAAGATTTGGGAAGTTTCGAAAAGAGTCTGGAATCTATAAATTTTTCTGCTCTCAATGCTAGAAAGGTTATAGAAGGTTGTATTGAAAGCTTGTCAATTGATGGACAAGATATAGGGGGGGAAATCAGTCAAAAATCGAGTAAGAAGAAGAAGGAGCCGGGTAAATATGGCTTCGACTTCTTTCAGATTGCTGCTGGTCTGTTTCAAGCAAAGTCGGGTTCGAAGTCTACTAAAATGAAAGATCATGGTGACACTGAGTTAATGGACAGAAAGATGAATGGCCCTAAGCAAGGGAATATCTTGAGTTCTACTACTAAAGAAAGACATTTGAATTTTGATATGGATCTAGACGGCCTTAGTGGCACTTCAAGGCACAGTTTCAATGATGATGCCATTAGACAAGACAGAGTGGGTGAGACATTTGGGAAGGCTAGCAGAATGAATGTAGTTTCTGATG</gDNA_template>
            <first_frame> V  L  V  D  F  L  S  G  V  D  V  E  I  G  N  L  K  K  G  V  R  K  G  I  E  N  N  Q  I  T  V  E  D  L  G  S  F  E  K  S  L  E  S  I  N  F  S  A  L  N  A  R  K  V  I  E  G  C  I  E  S  L  S  I  D  G  Q  D  I  G  G  E  I  S  Q  K  S  S  K  K  K  K  E  P  G  K  Y  G  F  D  F  F  Q  I  A  A  G  L  F  Q  A  K  S  G  S  K  S  T  K  M  K  D  H  G  D  T  E  L  M  D  R  K  M  N  G  P  K  Q  G  N  I  L  S  S  T  T  K  E  R  H  L  N  F  D  M  D  L  D  G  L  S  G  T  S  R  H  S  F  N  D  D  A  I  R  Q  D  R  V  G  E  T  F  G  K  A  S  R  M  N  V  V  S  D  </first_frame>
            <second_frame>  F  W  W  I  F  L  V  G  L  M  *  R  L  V  I  *  R  R  V  L  G  K  E  L  R  I  I  K  L  L  W  K  I  W  E  V  S  K  R  V  W  N  L  *  I  F  L  L  S  M  L  E  R  L  *  K  V  V  L  K  A  C  Q  L  M  D  K  I  *  G  G  K  S  V  K  N  R  V  R  R  R  R  S  R  V  N  M  A  S  T  S  F  R  L  L  L  V  C  F  K  Q  S  R  V  R  S  L  L  K  *  K  I  M  V  T  L  S  *  W  T  E  R  *  M  A  L  S  K  G  I  S  *  V  L  L  L  K  K  D  I  *  I  L  I  W  I  *  T  A  L  V  A  L  Q  G  T  V  S  M  M  M  P  L  D  K  T  E  W  V  R  H  L  G  R  L  A  E  *  M  *  F  L  M </second_frame>
            <third_frame>   F  G  G  F  S  *  W  G  *  C  R  D  W  *  F  E  E  G  C  *  E  R  N  *  E  *  S  N  Y  C  G  R  F  G  K  F  R  K  E  S  G  I  Y  K  F  F  C  S  Q  C  *  K  G  Y  R  R  L  Y  *  K  L  V  N  *  W  T  R  Y  R  G  G  N  Q  S  K  I  E  *  E  E  E  G  A  G  *  I  W  L  R  L  L  S  D  C  C  W  S  V  S  S  K  V  G  F  E  V  Y  *  N  E  R  S  W  *  H  *  V  N  G  Q  K  D  E  W  P  *  A  R  E  Y  L  E  F  Y  Y  *  R  K  T  F  E  F  *  Y  G  S  R  R  P  *  W  H  F  K  A  Q  F  Q  *  *  C  H  *  T  R  Q  S  G  *  D  I  W  E  G  *  Q  N  E  C  S  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29978" stop="30526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVDFLSGVDVEIGNLKKGVRKGIENNQITVEDLGSFEKSLESINFSALNARKVIEGCIESLSIDGQDIGGEISQKSSKKKKEPGKYGFDFFQIAAGLFQAKSGSKSTKMKDHGDTELMDRKMNGPKQGNILSSTTKERHLNFDMDLDGLSGTSRHSFNDDAIRQDRVGETFGKASRMNVVSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37919" PGL_stop="35768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37919" e_stop="37411"/>
            <exon e_start="36785" e_stop="35768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="37919" e_stop="37411" e_length="509"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36785" e_stop="35768" e_length="1018"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37919" stop="37411"/>
              <exon start="36785" stop="35768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG : CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGG</gDNA_template>
            <first_frame> I  H  I  S  N  L  S  P  P  T  K  S  S  V  V  F  S  C  *  R  I  F  R  P  I  S  F  S  I  L  Y  R  I  F  F  F  L  Y  I  I  S  V  F  F  L  L  N  I  R  I  C  M  A  V  S  F  L  N  R  E  V  S  D  L  C  L  G  K  P  A  L  K  P  I  P  A  E  A  T  V  S  E  A  L  T  L  L  K  K  S  G  E  T  H  V  S  V  W  S  C  D  H  I  R  K  V  V  E  E  E  E  G  G  G  G  Y  S  V  C  R  C  I  G  K  I  C  M  V  D  V  I  C  F  L  C  T  E  E  N  L  A  D  P  S  K  A  L  Q  T  P  V  E  Q  I  L  P  K  G  N  S  I  V  R  H  L  D  P  N  S  S :   L  L  E  A  I  D  Y  I  L  E  G  A  Q  N  L  V  I  P  I  Q  N  S  K  S  T  P  S  R  K  K  L  S  S  K  A  S  F  L  T  P  T  N  H  N  G  V  E  Y  C  W  L  T  Q  E  D  I  V  R  F  L  L  N  S  I  G  V  F  S  P  M  P  T  F  S  I  E  S  L  N  I  I  N  H  D  M  M  T  V  S  Y  H  D  P  A  I  S  S  L  D  A  I  I  R  A  Y  I  E  Q  S  S  V  A  V  V  D  E  D  N  R  L  I  G  E  I  S  P  F  T  L  A  Y  C  D  E  T  V  A  A  A  I  A  T  L  S  A  G  D  L  M  T  Y  I  D  Y  G  G  P  P  E  D  L  I  E  L  V  K  M  R  L  Q  E  K  K  L  G  A  M  V  E  L  I  D  E  E  F  S  L  S  S  S  S  S  S  A  S  S  C  S  S  D  D  E  S  G  S  S  K  V  T  V  L  G  R  Y  S  S  A  R  R  S  E  A  I  T  C  Y  P  W  S  S  L  V  A  V  M  I  Q  A  L  A  H  R  A  N  S  I  W  V  M  D  E  D  H  N  L  I  G  V  V  T  F  K  G  I  L  E  V  F  R  S  I  A  N  A  K  R  K  P  E  R  E  N  T  S  K  Q  *  Y  T  I  K  C  H  I  C  *  V  N  F  F  L  N  V  I  I  F  I  V  F  Y  F  Y  F  Y  F  E  N  G  T  M  F  A  *  I  L  L  K  *  T  E  E  L  K  L  L  G  D  A  W </first_frame>
            <second_frame>  F  T  Y  L  T  Y  H  H  R  L  S  L  P  L  Y  F  P  V  K  E  F  S  G  R  S  L  S  L  F  Y  I  G  F  F  S  F  S  I  L  Y  R  Y  S  F  C  *  I  F  A  F  A  W  Q  *  V  F  *  I  G  R  Y  L  T  C  V  L  V  S  R  R  *  S  L  F  Q  L  K  L  L  Y  R  R  R  *  H  C  *  K  N  P  A  R  L  M  *  A  F  G  A  V  T  I  S  G  R  L  *  K  K  K  K  E  A  E  D  I  L  F  A  A  V  L  G  R  S  V  W  *  M  *  F  A  S  S  V  R  K  R  I  W  R  I  L  L  R  L  F  K  L  L  W  N  R  F  C  L  K  G  I  P  L  S  D  I  *  I  Q  I  L   : A  C  W  K  R  *  I  T  F  L  K  A  L  R  I  W  L  Y  Q  F  K  I  L  R  A  P  L  R  G  K  S  F  R  V  K  R  H  F  *  L  P  Q  I  I  T  E  L  N  T  V  G  *  R  R  K  T  L  S  G  S  F  *  T  P  L  E  S  S  L  P  C  L  L  F  Q  L  N  R  S  T  S  *  I  T  I  *  *  L  L  V  I  M  I  L  Q  F  L  L  W  M  P  *  F  G  R  I  L  S  R  A  Q  L  Q  L  L  M  K  T  T  D  *  L  V  K  S  L  P  S  L  *  P  T  V  M  R  P  L  Q  Q  Q  S  R  H  F  Q  L  V  I  S  *  L  T  S  T  T  V  V  L  Q  R  T  *  S  S  W  S  R  *  G  Y  K  K  R  N  L  G  Q  W  L  N  *  *  M  K  S  F  H  C  L  H  H  H  L  L  L  Q  A  V  H  Q  M  M  N  Q  A  Q  A  K  L  L  C  *  D  D  I  L  Q  Q  E  D  P  R  R  L  L  V  I  H  G  V  H  W  W  L  *  *  S  K  L  *  H  I  A  L  I  P  F  G  *  W  M  K  I  T  I  *  S  E  L  *  H  L  K  E  F  W  K  F  S  G  V  S  L  M  R  S  V  N  Q  K  G  R  I  H  Q  S  N  N  T  Q  L  N  A  T  Y  V  E  L  I  F  S  *  M  S  S  Y  L  L  C  S  I  F  I  F  I  L  K  M  G  L  C  L  H  K  F  C  L  N  E  L  K  N  *  N  F  L  G  M  L   </second_frame>
            <third_frame>   S  H  I  *  P  I  T  T  D  *  V  F  R  C  I  F  L  L  K  N  F  P  A  D  L  F  L  Y  F  I  S  D  F  F  L  S  L  Y  Y  I  G  I  L  S  V  E  Y  S  H  L  H  G  S  K  F  F  E  S  G  G  I  *  P  V  S  W  *  A  G  V  K  A  Y  S  S  *  S  Y  C  I  G  G  V  D  I  V  E  K  I  R  R  D  S  C  K  R  L  E  L  *  P  Y  Q  E  G  C  R  R  R  R  R  R  R  R  I  F  C  L  P  L  Y  W  E  D  L  Y  G  R  C  D  L  L  P  L  Y  G  R  E  F  G  G  S  F  *  G  S  S  N  S  C  G  T  D  F  A  *  R  E  F  H  C  Q  T  F  R  S  K  F  *  :  L  V  G  S  D  R  L  H  S  *  R  R  S  E  S  G  Y  T  N  S  K  F  *  E  H  P  F  E  E  K  A  F  E  *  S  V  I  F  D  S  H  K  S  *  R  S  *  I  L  L  A  N  A  G  R  H  C  P  V  P  S  E  L  H  W  S  L  L  S  H  A  Y  F  F  N  *  I  A  Q  H  H  K  S  R  Y  D  D  C  *  L  S  *  S  C  N  F  F  F  G  C  H  N  S  G  V  Y  *  A  E  L  S  C  S  C  *  *  R  Q  P  I  D  W  *  N  L  S  L  H  S  S  L  L  *  *  D  R  C  S  S  N  R  D  T  F  S  W  *  S  H  D  L  H  R  L  R  W  S  S  R  G  L  D  R  V  G  Q  D  E  V  T  R  K  E  T  W  G  N  G  *  T  N  R  *  R  V  F  T  V  F  I  I  I  F  C  F  K  L  F  I  R  *  *  I  R  L  K  Q  S  Y  C  A  R  T  I  F  F  S  K  K  I  R  G  D  Y  L  L  S  M  E  F  I  G  G  C  D  D  P  S  S  S  T  S  R  *  F  H  L  G  D  G  *  R  S  Q  F  D  R  S  C  N  I  *  R  N  S  G  S  F  Q  E  Y  R  *  C  E  A  *  T  R  K  G  E  Y  I  K  A  I  I  H  N  *  M  P  H  M  L  S  *  F  F  L  K  C  H  H  I  Y  C  V  L  F  L  F  L  F  *  K  W  D  Y  V  C  I  N  F  A  *  M  N  *  R  T  E  T  S  W  G  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37862" stop="37411"/>
                    <exon start="36785" stop="35924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIFRPISFSILYRIFFFLYIISVFFLLNIRICMAVSFLNREVSDLCLGKPALKPIPAEATVSEALTLLKKSGETHVSVWSCDHIRKVVEEEEGGGGYSVCRCIGKICMVDVICFLCTEENLADPSKALQTPVEQILPKGNSIVRHLDPNSSLLEAIDYILEGAQNLVIPIQNSKSTPSRKKLSSKASFLTPTNHNGVEYCWLTQEDIVRFLLNSIGVFSPMPTFSIESLNIINHDMMTVSYHDPAISSLDAIIRAYIEQSSVAVVDEDNRLIGEISPFTLAYCDETVAAAIATLSAGDLMTYIDYGGPPEDLIELVKMRLQEKKLGAMVELIDEEFSLSSSSSSASSCSSDDESGSSKVTVLGRYSSARRSEAITCYPWSSLVAVMIQALAHRANSIWVMDEDHNLIGVVTFKGILEVFRSIANAKRKPERENTSKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="50059" PGL_stop="56437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50059" e_stop="50777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="50059" e_stop="50777" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50059" stop="50777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTTGGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAGGTCAATTTTTCTCTTAAAATTTTCTGACCATATCATAATTTGATTCAAATTGCTCATAATTTGCTTGAATAATTTGATAGAATCATCACAAAATCTAGTAATTTGACCTAACGAAAGAAGTGACGACAAATTTCTATTGTACTGGTGATCTTGGACGTGAACTAAATCAATTTAATCTGAGAAAGAGTGCTATATTTTTATTTTATTCCAAGCAACAGTTAGTTGGATGAAGATTACGACTTGAAGCTCCAGTAGGACAATTTTTTTGTGTTGTGTAGAGATTAGGTGGGTACATAACTCTAGCAAAACCGGTAACCTGAATGGAATAAGTGTTGGTGGTTTATGGATATCAGGTTATTGAGTTACCAAATTTGTAGGATGAGAAATGGTTGTGTGCGAATGGAATTTTTATGTTACATTGCCACATGGTTATGGCTGAAGAGAAAATGCAACCCCAAATTGATAGAAATTCTCATTTCTAAGAACTTCGAGAATGAAAATTAAAATGTATTAGCCCTGACAACGTTGGAGTAGAAAGTATTAGCCAAGGGTGTTAGAGTTACCTTGGAGTAGTAATCGACCTTGGTGTCTATCATGGGAG</gDNA_template>
            <first_frame> Q  N  L  V  S  K  I  Q  N  Y  *  H  A  S  I  *  K  *  K  *  R  S  E  K  I  V  S  V  F  L  Q  R  S  E  V  A  S  S  R  G  Q  F  F  S  *  N  F  L  T  I  S  *  F  D  S  N  C  S  *  F  A  *  I  I  *  *  N  H  H  K  I  *  *  F  D  L  T  K  E  V  T  T  N  F  Y  C  T  G  D  L  G  R  E  L  N  Q  F  N  L  R  K  S  A  I  F  L  F  Y  S  K  Q  Q  L  V  G  *  R  L  R  L  E  A  P  V  G  Q  F  F  C  V  V  *  R  L  G  G  Y  I  T  L  A  K  P  V  T  *  M  E  *  V  L  V  V  Y  G  Y  Q  V  I  E  L  P  N  L  *  D  E  K  W  L  C  A  N  G  I  F  M  L  H  C  H  M  V  M  A  E  E  K  M  Q  P  Q  I  D  R  N  S  H  F  *  E  L  R  E  *  K  L  K  C  I  S  P  D  N  V  G  V  E  S  I  S  Q  G  C  *  S  Y  L  G  V  V  I  D  L  G  V  Y  H  G   </first_frame>
            <second_frame>  K  I  W  Y  Q  R  F  K  T  T  D  M  P  R  F  E  S  K  N  D  D  R  R  R  S  S  P  Y  S  Y  K  D  R  K  S  H  H  H  E  V  N  F  S  L  K  I  F  *  P  Y  H  N  L  I  Q  I  A  H  N  L  L  E  *  F  D  R  I  I  T  K  S  S  N  L  T  *  R  K  K  *  R  Q  I  S  I  V  L  V  I  L  D  V  N  *  I  N  L  I  *  E  R  V  L  Y  F  Y  F  I  P  S  N  S  *  L  D  E  D  Y  D  L  K  L  Q  *  D  N  F  F  V  L  C  R  D  *  V  G  T  *  L  *  Q  N  R  *  P  E  W  N  K  C  W  W  F  M  D  I  R  L  L  S  Y  Q  I  C  R  M  R  N  G  C  V  R  M  E  F  L  C  Y  I  A  T  W  L  W  L  K  R  K  C  N  P  K  L  I  E  I  L  I  S  K  N  F  E  N  E  N  *  N  V  L  A  L  T  T  L  E  *  K  V  L  A  K  G  V  R  V  T  L  E  *  *  S  T  L  V  S  I  M  G  </second_frame>
            <third_frame>   K  F  G  I  K  D  S  K  L  L  T  C  L  D  L  K  V  K  M  T  I  G  E  D  R  L  R  I  L  T  K  I  G  S  R  I  I  T  R  S  I  F  L  L  K  F  S  D  H  I  I  I  *  F  K  L  L  I  I  C  L  N  N  L  I  E  S  S  Q  N  L  V  I  *  P  N  E  R  S  D  D  K  F  L  L  Y  W  *  S  W  T  *  T  K  S  I  *  S  E  K  E  C  Y  I  F  I  L  F  Q  A  T  V  S  W  M  K  I  T  T  *  S  S  S  R  T  I  F  L  C  C  V  E  I  R  W  V  H  N  S  S  K  T  G  N  L  N  G  I  S  V  G  G  L  W  I  S  G  Y  *  V  T  K  F  V  G  *  E  M  V  V  C  E  W  N  F  Y  V  T  L  P  H  G  Y  G  *  R  E  N  A  T  P  N  *  *  K  F  S  F  L  R  T  S  R  M  K  I  K  M  Y  *  P  *  Q  R  W  S  R  K  Y  *  P  R  V  L  E  L  P  W  S  S  N  R  P  W  C  L  S  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53801" e_stop="54209"/>
            <exon e_start="54541" e_stop="54932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="53801" e_stop="54209" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="54541" e_stop="54932" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53801" stop="54209"/>
              <exon start="54541" stop="54932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG : AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGAT</gDNA_template>
            <first_frame> V  N  L  W  E  Q  C  T  N  *  *  F  *  I  K  F  C  L  F  A  Q  *  R  V  L  C  F  *  K  Q  M  S  C  M  L  T  S  S  V  S  K  S  R  I  C  K  P  P  *  A  *  Q  C  S  A  A  K  *  T  F  E  *  *  L  T  S  S  H  I  L  I  I  S  S  I  C  Y  F  D  E  G  V  C  G  F  W  N  H  T  C  G  S  V  F  N  L  S  L  V  I  Y  C  A  L  L  *  L  F  S  N  H  V  *  Q  Q  W  A  G  E  I  *  T  G  V  C  I  S  S  G  K  A  A  H  S  Y  A   : E  M  A  F  E  A  S  G  M  T  I  P  G  T  E  I  G  P  V  V  T  A  E  I  P  T  K  V  L  C  L  T  D  N  D  K  V  K  Y  C  S  N  A  N  E  L  V  I  L  W  M  F  *  R  *  L  P  L  K  N  Y  L  M  T  *  S  M  K  K  F  W  K  T  *  R  R  R  P  K  I  W  *  L  Q  L  L  I  H  *  N  I  F  C  Y  L  F  F  V  L  *  Y  V  L  L  F  P  S  V  S  H  V  H  I  E  I  V  S  I  K  K  R  *  L  K  M  R  H  F  Q  I  D </first_frame>
            <second_frame>  S  I  F  G  N  S  V  P  T  D  N  S  E  S  N  F  V  Y  L  L  S  K  E  S  C  A  F  R  N  K  C  L  A  C  S  L  R  Q  S  Q  K  V  E  F  V  N  R  L  E  L  N  N  V  Q  Q  P  S  K  L  L  N  D  D  *  L  L  P  I  Y  *  L  Y  L  P  Y  V  I  S  M  K  G  C  V  V  S  G  T  T  L  V  V  L  Y  L  T  S  P  W  *  F  T  V  L  F  Y  N  F  F  P  I  M  F  N  S  S  G  Q  V  K  S  E  Q  E  C  V  L  A  Q  A  R  L  H  I  A  M  Q  :  K  W  L  L  K  L  V  V  *  L  F  L  V  Q  R  *  G  L  L  *  L  L  K  F  Q  P  R  S  Y  A  *  P  I  M  T  R  *  N  I  V  V  M  L  T  S  *  S  F  S  G  C  F  E  G  D  Y  P  S  R  I  I  *  *  R  R  V  *  R  N  F  G  R  H  E  E  G  G  Q  K  F  G  N  C  S  F  S  F  I  K  I  S  S  V  I  S  F  L  F  Y  D  M  F  F  C  F  H  L  F  L  M  F  T  *  K  L  F  L  L  K  K  D  D  *  K  *  D  T  F  K  L   </second_frame>
            <third_frame>   Q  S  L  G  T  V  Y  Q  L  I  I  L  N  Q  I  L  F  I  C  S  V  K  S  L  V  L  L  E  T  N  V  L  H  A  H  F  V  S  L  K  K  *  N  L  *  T  A  L  S  L  T  M  F  S  S  Q  V  N  F  *  M  M  I  N  F  F  P  Y  T  D  Y  I  F  H  M  L  F  R  *  R  G  V  W  F  L  E  P  H  L  W  F  C  I  *  P  L  P  G  N  L  L  C  S  F  I  T  F  F  Q  S  C  L  T  A  V  G  R  *  N  L  N  R  S  V  Y  *  L  R  Q  G  C  T  *  L  C  R :   N  G  F  *  S  *  W  Y  D  Y  S  W  Y  R  D  R  A  C  C  D  C  *  N  S  N  Q  G  L  M  L  N  R  *  *  Q  G  K  I  L  *  *  C  *  R  V  S  H  S  L  D  V  L  K  V  I  T  P  Q  E  L  F  D  D  V  E  Y  E  E  I  L  E  D  M  K  K  E  A  K  N  L  V  T  A  A  S  H  S  L  K  Y  L  L  L  S  L  F  C  F  M  I  C  S  F  V  S  I  C  F  S  C  S  H  R  N  C  F  Y  *  K  K  M  I  E  N  E  T  L  S  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54671" stop="54895"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSHSLDVLKVITPQELFDDVEYEEILEDMKKEAKNLVTAASHSLKYLLLSLFCFMICSFVSICFSCSHRNCFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54164" stop="54209"/>
                    <exon start="54541" stop="54698"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGVCISSGKAAHSYAEMAFEASGMTIPGTEIGPVVTAEIPTKVLCLTDNDKVKYCSNANELVILWMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="50918" e_stop="51294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="50918" e_stop="51294" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50918" stop="51294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAAGCTAAGGCAAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTC</gDNA_template>
            <first_frame> A  S  S  Y  *  R  *  K  E  V  L  K  N  Y  V  P  H  V  A  I  P  Y  F  L  S  T  M  P  I  *  S  C  *  T  Y  P  G  T  M  *  N  G  V  G  Y  I  M  E  Q  W  F  *  I  L  S  R  L  D  Y  L  L  *  V  P  H  P  C  R  H  N  M  G  D  W  V  W  V  *  D  S  C  P  I  W  P  T  D  F  E  Y  F  D  Q  N  R  W  E  F  G  *  F  *  *  F  L  *  S  I  Q  K  L  R  Q  N  *  R  K  W  N  T  F  Y  I  E  I   </first_frame>
            <second_frame>  H  H  H  T  K  G  K  R  K  Y  L  K  I  M  S  P  M  *  Q  F  H  T  F  Y  L  L  C  Q  F  K  V  A  K  H  I  L  E  P  C  R  M  V  L  D  I  L  W  N  N  G  F  R  Y  *  V  A  W  T  I  Y  F  R  C  R  T  R  V  D  T  T  W  V  I  G  C  G  C  E  I  H  V  R  F  G  Q  P  I  L  S  I  L  T  K  I  D  G  N  L  D  S  F  N  D  F  Y  N  Q  Y  K  S  *  G  K  I  E  E  N  G  I  P  F  I  *  K  F  </second_frame>
            <third_frame>   I  I  I  L  K  V  K  G  S  T  *  K  L  C  P  P  C  S  N  S  I  L  F  I  Y  Y  A  N  L  K  L  L  N  I  S  W  N  H  V  E  W  C  W  I  Y  Y  G  T  M  V  L  D  T  K  S  L  G  L  S  T  L  G  A  A  P  V  S  T  Q  H  G  *  L  G  V  G  V  R  F  M  S  D  L  A  N  R  F  *  V  F  *  P  K  S  M  G  I  W  I  V  L  M  I  S  I  I  N  T  K  A  K  A  K  L  K  K  M  E  Y  L  L  Y  R  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="50066" e_stop="50176"/>
            <exon e_start="51974" e_stop="52143"/>
            <exon e_start="53189" e_stop="53305"/>
            <exon e_start="54143" e_stop="54209"/>
            <exon e_start="54541" e_stop="54620"/>
            <exon e_start="54701" e_stop="54781"/>
            <exon e_start="55389" e_stop="55455"/>
            <exon e_start="56048" e_stop="56437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50066" e_stop="50176" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50177" i_stop="51973" i_length="1797"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51974" e_stop="52143" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52144" i_stop="53188" i_length="1045"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53189" e_stop="53305" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53306" i_stop="54142" i_length="837"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54143" e_stop="54209" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54541" e_stop="54620" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.709" acc_prob="0.934">
            <gDNA_intron_boundary i_start="54621" i_stop="54700" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54701" e_stop="54781" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55389" e_stop="55455" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="56048" e_stop="56437" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50066" stop="50176"/>
              <exon start="51974" stop="52143"/>
              <exon start="53189" stop="53305"/>
              <exon start="54143" stop="54209"/>
              <exon start="54541" stop="54620"/>
              <exon start="54701" stop="54781"/>
              <exon start="55389" stop="55455"/>
              <exon start="56048" stop="56437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAG : AGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAG : GCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAGAG : CAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG : AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAG : GTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTG : GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG : GTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAA</gDNA_template>
            <first_frame> W  Y  Q  R  F  K  T  T  D  M  P  R  F  E  S  K  N  D  D  R  R  R  S  S  P  Y  S  Y  K  D  R  K  S  H  H  H  E  :  S  Q  S  N  G  S  Q  H  F  R  V  K  A  N  Y  S  G  D  Q  Y  R  H  G  H  R  Q  R  E  D  Y  K  D  K  S  T  R  S  H  R  R  N  D  D  N  E  D  Y  S  R  S  R  N  H  K  F  D  R :   R  Q  D  R  G  G  R  Y  K  G  E  T  C  G  S  R  S  R  S  K  D  R  S  H  E  E  A  R  S  R  S  S  S  P  L  P  P  K  S :   S  G  Q  V  K  S  E  Q  E  C  V  L  A  Q  A  R  L  H  I  A  M  Q  :  K  W  L  L  K  L  V  V  *  L  F  L  V  Q  R  *  G  L  L  *  L  L  K  F  Q  P  R :   *  L  P  L  K  N  Y  L  M  T  *  S  M  K  K  F  W  K  T  *  R  R  R  P  K  I  W :   *  L  D  *  C  C  Y  S  S  A  R  T  *  S  K  N  G  D  G  F  G  K  :  V  F  L  E  Y  S  D  T  I  D  C  T  K  A  K  A  A  L  G  G  R  K  F  G  G  N  T  A  V  A  I  F  Y  P  E  D  K  C  Y  K  K  D  Y  A  S  *  F  S  E  Y  L  P  C  L  *  S  C  I  V  L  V  L  A  I  G  H  L  A  A  V  K  A  V  R  *  L  F  F  F  H  H  N  C  N  A  N  P  A  I  W  W  V  V  *  A  A  *  Y  S  L  S  I  R  R  S  F  S  C  F  K  L  L  *  *  P  D  F  G  Y  I  Y  I  M  L  N  I  T  K  I  * </first_frame>
            <second_frame>  G  I  K  D  S  K  L  L  T  C  L  D  L  K  V  K  M  T  I  G  E  D  R  L  R  I  L  T  K  I  G  S  R  I  I  T  R :   A  S  L  M  D  R  S  T  L  E  *  R  L  I  I  L  E  I  N  T  V  T  V  T  V  S  V  R  T  T  R  I  K  A  P  G  A  T  E  E  M  T  T  M  R  I  T  A  V  P  G  T  I  N  L  T   : G  A  K  I  V  E  V  D  I  R  V  K  H  V  D  P  V  L  G  Q  R  I  G  L  M  K  K  L  D  Q  D  Q  V  L  L  Y  P  Q  R   : A  V  G  R  *  N  L  N  R  S  V  Y  *  L  R  Q  G  C  T  *  L  C  R :   N  G  F  *  S  *  W  Y  D  Y  S  W  Y  R  D  R  A  C  C  D  C  *  N  S  N  Q   : G  D  Y  P  S  R  I  I  *  *  R  R  V  *  R  N  F  G  R  H  E  E  G  G  Q  K  F   : G  D  L  I  D  V  V  I  P  R  P  E  P  D  Q  K  M  V  M  V  L  G  R :   Y  F  S  S  T  L  T  L  S  I  A  R  K  Q  R  Q  H  L  V  A  G  N  L  E  G  I  L  L  L  P  F  F  I  L  K  T  N  A  T  R  R  I  M  P  L  N  F  L  N  I  F  H  V  Y  S  L  V  *  F  *  C  L  Q  S  A  I  *  L  R  S  R  P  F  D  N  Y  F  S  S  I  T  I  A  T  L  T  Q  P  Y  G  G  W  F  E  L  L  D  I  V  S  L  L  G  E  V  F  H  V  S  N  Y  C  N  D  Q  I  L  D  I  S  I  *  C  S  I  L  L  K  Y   </second_frame>
            <third_frame>   V  S  K  I  Q  N  Y  *  H  A  S  I  *  K  *  K  *  R  S  E  K  I  V  S  V  F  L  Q  R  S  E  V  A  S  S  R   : E  P  V  *  W  I  A  A  L  *  S  E  G  *  L  F  W  R  S  I  P  S  R  S  P  S  A  *  G  L  Q  G  *  K  H  Q  E  P  Q  K  K  *  R  Q  *  G  L  Q  P  F  Q  E  P  *  I  *  Q  :  A  P  R  S  W  R  *  I  *  G  *  N  M  W  I  P  F  *  V  K  G  S  V  S  *  R  S  *  I  K  I  K  F  S  F  T  P  K  E  :  Q  W  A  G  E  I  *  T  G  V  C  I  S  S  G  K  A  A  H  S  Y  A   : E  M  A  F  E  A  S  G  M  T  I  P  G  T  E  I  G  P  V  V  T  A  E  I  P  T  K  :  V  I  T  P  Q  E  L  F  D  D  V  E  Y  E  E  I  L  E  D  M  K  K  E  A  K  N  L  :  V  T  *  L  M  L  L  F  L  G  Q  N  L  I  K  K  W  *  W  F  W  E   : G  I  S  R  V  L  *  H  Y  R  L  H  E  S  K  G  S  T  W  W  Q  E  I  W  R  E  Y  C  C  C  H  F  L  S  *  R  Q  M  L  Q  E  G  L  C  L  L  I  F  *  I  S  S  M  F  I  V  L  Y  S  F  S  A  C  N  R  P  F  S  C  G  Q  G  R  S  I  I  I  F  L  P  S  Q  L  Q  R  *  P  S  H  M  V  G  G  L  S  C  L  I  *  S  L  Y  *  E  K  F  F  M  F  Q  T  I  V  M  T  R  F  W  I  Y  L  Y  N  A  Q  Y  Y  *  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50066" stop="50176"/>
                    <exon start="51974" stop="52143"/>
                    <exon start="53189" stop="53305"/>
                    <exon start="54143" stop="54209"/>
                    <exon start="54541" stop="54567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYQRFKTTDMPRFESKNDDRRRSSPYSYKDRKSHHHESQSNGSQHFRVKANYSGDQYRHGHRQREDYKDKSTRSHRRNDDNEDYSRSRNHKFDRRQDRGGRYKGETCGSRSRSKDRSHEEARSRSSSPLPPKSSGQVKSEQECVLAQARLHIAMQKWLLKLVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54742" stop="54781"/>
                    <exon start="55389" stop="55455"/>
                    <exon start="56048" stop="56222"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNFGRHEEGGQKFGDLIDVVIPRPEPDQKMVMVLGRYFSSTLTLSIARKQRQHLVAGNLEGILLLPFFILKTNATRRIMPLNFLNIFHVYSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56428" PGL_stop="55564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56428" e_stop="55564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="56428" e_stop="55564" e_length="865"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56428" stop="55564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATATTGAGCATTATATAGATATATCCAAAATCTGGTCATTACAATAGTTTGAAACATGAAAAACTTCTCCTAATAGAGAGACTATATCAAGCAGCTCAAACCACCCACCATATGGCTGGGTTAGCGTTGCAATTGTGATGGAAGAAAAATAATTATCGAACGGCCTTGACCGCAGCTAAATGGCCGATTGCAAGCACTAAAACTATACAAGACTATAAACATGGAAGATATTCAGAAAATTAAGAGGCATAATCCTTCTTGTAGCATTTGTCTTCAGGATAAAAAATGGCAACAGCAGTATTCCCTCCAAATTTCCTGCCACCAAGTGCTGCCTTTGCTTTCGTGCAATCGATAGTGTCAGAGTACTCGAGAAATACCTGCAGTTTGAAACACAAAACCATCTGAAAGAAGGAGAGGGGGGGGATTCAAGATCGAAAAAGACTACTATAATTGTTGCGTATTATCCTGACTGTTGAAATATGGCTATATATAACACCCATGCAGGGTTGAAGTGAACTATCAAGATGTACATTACTGGCAAAATGATCAATTGATTGTGATGCTACATTCTGTGTGCATTTTTTATGAGGATTAAATAATGAGTCGTTTCAATTCTCTGTGCAGCAGATTGAGGATTAATACATATGAGAGACAGATGAGGAAAGAAAAAAATAAAAATGCTTATGCATCACTTCTTCATTCAAAAATTGCCTAAACAGTACATTCTAAGATGATCTCAAAATCTAGAGTCAAACAGTAAAAAGGAAAATAAGCGATAACTTGTAGTAACAGAGCACTTTATTTTGCCAATGTCAACCAAGAAGTGACCATGGACTTTCAATGGCAGCAAATTATTTAAAC</gDNA_template>
            <first_frame> S  N  I  E  H  Y  I  D  I  S  K  I  W  S  L  Q  *  F  E  T  *  K  T  S  P  N  R  E  T  I  S  S  S  S  N  H  P  P  Y  G  W  V  S  V  A  I  V  M  E  E  K  *  L  S  N  G  L  D  R  S  *  M  A  D  C  K  H  *  N  Y  T  R  L  *  T  W  K  I  F  R  K  L  R  G  I  I  L  L  V  A  F  V  F  R  I  K  N  G  N  S  S  I  P  S  K  F  P  A  T  K  C  C  L  C  F  R  A  I  D  S  V  R  V  L  E  K  Y  L  Q  F  E  T  Q  N  H  L  K  E  G  E  G  G  D  S  R  S  K  K  T  T  I  I  V  A  Y  Y  P  D  C  *  N  M  A  I  Y  N  T  H  A  G  L  K  *  T  I  K  M  Y  I  T  G  K  M  I  N  *  L  *  C  Y  I  L  C  A  F  F  M  R  I  K  *  *  V  V  S  I  L  C  A  A  D  *  G  L  I  H  M  R  D  R  *  G  K  K  K  I  K  M  L  M  H  H  F  F  I  Q  K  L  P  K  Q  Y  I  L  R  *  S  Q  N  L  E  S  N  S  K  K  E  N  K  R  *  L  V  V  T  E  H  F  I  L  P  M  S  T  K  K  *  P  W  T  F  N  G  S  K  L  F  K  </first_frame>
            <second_frame>  V  I  L  S  I  I  *  I  Y  P  K  S  G  H  Y  N  S  L  K  H  E  K  L  L  L  I  E  R  L  Y  Q  A  A  Q  T  T  H  H  M  A  G  L  A  L  Q  L  *  W  K  K  N  N  Y  R  T  A  L  T  A  A  K  W  P  I  A  S  T  K  T  I  Q  D  Y  K  H  G  R  Y  S  E  N  *  E  A  *  S  F  L  *  H  L  S  S  G  *  K  M  A  T  A  V  F  P  P  N  F  L  P  P  S  A  A  F  A  F  V  Q  S  I  V  S  E  Y  S  R  N  T  C  S  L  K  H  K  T  I  *  K  K  E  R  G  G  I  Q  D  R  K  R  L  L  *  L  L  R  I  I  L  T  V  E  I  W  L  Y  I  T  P  M  Q  G  *  S  E  L  S  R  C  T  L  L  A  K  *  S  I  D  C  D  A  T  F  C  V  H  F  L  *  G  L  N  N  E  S  F  Q  F  S  V  Q  Q  I  E  D  *  Y  I  *  E  T  D  E  E  R  K  K  *  K  C  L  C  I  T  S  S  F  K  N  C  L  N  S  T  F  *  D  D  L  K  I  *  S  Q  T  V  K  R  K  I  S  D  N  L  *  *  Q  S  T  L  F  C  Q  C  Q  P  R  S  D  H  G  L  S  M  A  A  N  Y  L  N </second_frame>
            <third_frame>   *  Y  *  A  L  Y  R  Y  I  Q  N  L  V  I  T  I  V  *  N  M  K  N  F  S  *  *  R  D  Y  I  K  Q  L  K  P  P  T  I  W  L  G  *  R  C  N  C  D  G  R  K  I  I  I  E  R  P  *  P  Q  L  N  G  R  L  Q  A  L  K  L  Y  K  T  I  N  M  E  D  I  Q  K  I  K  R  H  N  P  S  C  S  I  C  L  Q  D  K  K  W  Q  Q  Q  Y  S  L  Q  I  S  C  H  Q  V  L  P  L  L  S  C  N  R  *  C  Q  S  T  R  E  I  P  A  V  *  N  T  K  P  S  E  R  R  R  G  G  G  F  K  I  E  K  D  Y  Y  N  C  C  V  L  S  *  L  L  K  Y  G  Y  I  *  H  P  C  R  V  E  V  N  Y  Q  D  V  H  Y  W  Q  N  D  Q  L  I  V  M  L  H  S  V  C  I  F  Y  E  D  *  I  M  S  R  F  N  S  L  C  S  R  L  R  I  N  T  Y  E  R  Q  M  R  K  E  K  N  K  N  A  Y  A  S  L  L  H  S  K  I  A  *  T  V  H  S  K  M  I  S  K  S  R  V  K  Q  *  K  G  K  *  A  I  T  C  S  N  R  A  L  Y  F  A  N  V  N  Q  E  V  T  M  D  F  Q  W  Q  Q  I  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56206" stop="55949"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWKIFRKLRGIILLVAFVFRIKNGNSSIPSKFPATKCCLCFRAIDSVRVLEKYLQFETQNHLKEGEGGDSRSKKTTIIVAYYPDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="57392" PGL_stop="59631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57392" e_stop="57672"/>
            <exon e_start="57918" e_stop="58158"/>
            <exon e_start="58562" e_stop="58682"/>
            <exon e_start="58835" e_stop="59290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.866" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57392" e_stop="57672" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57918" e_stop="58158" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58562" e_stop="58682" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.866">
            <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="58835" e_stop="59290" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57392" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG : GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT : GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG : GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCTAAGTGTTGAAAATTAGTAATGAGCAATTAGAACATTCTATATA</gDNA_template>
            <first_frame> S  L  S  P  C  L  C  F  L  T  N  L  L  F  H  R  F  C  L  R  R  K  K  M  L  A  I  F  K  K  S  V  V  D  P  P  M  E  L  Q  S  P  A  S  L  Q  S  S  N  K  A  V  S  P  E  E  T  M  K  N  F  L  A  S  N  T  N  N  G  F  S  I  G  F  M  D  K  A  F  L  A  Y  S  K  P  P  S  S  S  N  A  Q  Q  R :   L  F  C  G  L  N  D  I  Y  C  I  F  L  G  S  L  N  N  L  W  A  L  N  K  Q  Y  G  L  S  K  G  T  N  E  A  M  L  V  S  E  A  Y  R  T  L  R  D  R  G  P  F  P  A  H  E  V  L  K  G  L  E  G  S  Y  G  F  V  I  Y  D  H  K  A  G  N  V  F  V  A  L  :  G  A  D  E  T  A  K  M  F  W  G  I  A  S  D  G  S  V  M  I  S  D  N  V  D  H  I  K  G  S  C  L  K  S  F  A  P  F  P  T   : G  C  M  Y  H  S  E  S  G  L  K  S  F  E  H  P  S  F  K  M  K  A  M  P  R  V  D  S  E  G  A  M  C  G  A  C  F  K  V  D  V  Y  S  K  V  N  S  M  P  R  V  G  S  S  A  N  W  A  N  W  G  Q  Q  A  *  V  H  L  D  L  T  L  T  N  Y  N  I  K  K  K  R  K  K  Y  F  I  F  V  F  I  P  V  V  I  F  C  F  P  I  V  F  Q  *  A  S  C  I  F  H  K  G  L  S  F  V  N  F  H  M  R  F  Q  H  E  K  I  V  E  F  P  F  L  F  V  F  L  V  P  K  C  *  K  L  V  M  S  N  *  N  I  L  Y  </first_frame>
            <second_frame>  V  Y  H  L  V  C  A  F  S  L  I  Y  F  F  I  D  F  V  *  E  E  R  K  C  W  Q  F  S  R  K  V  W  L  I  H  Q  W  S  C  R  A  Q  P  L  C  N  H  Q  T  R  L  F  P  L  K  R  L  *  R  I  S  *  L  Q  I  P  T  M  G  F  L  L  D  S  W  T  R  H  S  W  P  I  P  N  L  H  P  H  Q  M  L  N  K   : G  C  S  V  G  *  M  T  Y  T  A  F  S  W  E  A  *  I  T  Y  G  H  *  T  S  S  M  V  C  Q  R  V  P  M  R  P  C  L  *  V  K  H  I  V  P  F  V  T  E  V  H  S  Q  L  M  R  F  S  R  D  L  R  V  A  M  A  L  *  S  M  I  I  R  L  V  M  S  L  L  P  L :   V  L  M  K  L  Q  R  C  S  G  E  *  H  L  M  D  L  S  *  S  L  I  M  W  I  I  S  K  E  A  V  S  N  H  L  L  P  S  Q  P  :  G  A  C  T  T  V  K  V  D  *  R  A  L  S  I  Q  V  S  R  *  K  Q  C  Q  E  W  I  V  K  E  P  C  V  E  L  A  S  K  L  M  S  T  P  R  *  I  A  C  Q  E  L  E  V  L  P  T  G  L  I  G  A  S  R  L  R  F  I  W  T  S  L  *  L  T  T  I  *  R  R  K  E  K  S  T  L  S  L  S  S  F  L  L  L  F  S  V  S  L  L  Y  F  N  K  P  P  A  S  S  I  R  A  S  A  L  *  I  F  T  *  G  S  N  M  R  R  L  L  S  F  P  F  C  L  F  S  *  F  L  S  V  E  N  *  *  *  A  I  R  T  F  Y  I </second_frame>
            <third_frame>   F  I  T  L  F  V  L  S  H  *  F  T  F  S  *  I  L  F  E  K  K  E  N  V  G  N  F  Q  E  K  C  G  *  S  T  N  G  A  A  E  P  S  L  F  A  I  I  K  Q  G  C  F  P  *  R  D  Y  E  E  F  L  S  F  K  Y  Q  Q  W  V  F  Y  W  I  H  G  Q  G  I  L  G  L  F  Q  T  S  I  L  I  K  C  S  T  K  :  V  V  L  W  V  E  *  H  I  L  H  F  L  G  K  L  E  *  L  M  G  T  K  Q  A  V  W  S  V  K  G  Y  Q  *  G  H  A  C  E  *  S  I  S  Y  P  S  *  Q  R  S  I  P  S  S  *  G  S  Q  G  T  *  G  *  L  W  L  C  D  L  *  S  *  G  W  *  C  L  C  C  P   : W  C  *  *  N  C  K  D  V  L  G  N  S  I  *  W  I  C  H  D  L  *  *  C  G  S  Y  Q  R  K  L  S  Q  I  I  C  S  L  P  N  R :   V  H  V  P  Q  *  K  W  I  E  E  L  *  A  S  K  F  Q  D  E  S  N  A  K  S  G  *  *  R  S  H  V  W  S  L  L  Q  S  *  C  L  L  Q  G  E  *  H  A  K  S  W  K  F  C  Q  L  G  *  L  G  P  A  G  L  G  S  F  G  P  H  F  N  *  L  Q  Y  K  E  E  K  K  K  V  L  Y  L  C  L  H  S  C  C  Y  F  L  F  P  Y  C  I  S  I  S  L  L  H  L  P  *  G  P  Q  L  C  K  F  S  H  E  V  P  T  *  E  D  C  *  V  S  L  F  V  C  F  L  S  S  *  V  L  K  I  S  N  E  Q  L  E  H  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57392" stop="57672"/>
                    <exon start="57918" stop="58158"/>
                    <exon start="58562" stop="58682"/>
                    <exon start="58835" stop="59028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSPCLCFLTNLLFHRFCLRRKKMLAIFKKSVVDPPMELQSPASLQSSNKAVSPEETMKNFLASNTNNGFSIGFMDKAFLAYSKPPSSSNAQQRLFCGLNDIYCIFLGSLNNLWALNKQYGLSKGTNEAMLVSEAYRTLRDRGPFPAHEVLKGLEGSYGFVIYDHKAGNVFVALGADETAKMFWGIASDGSVMISDNVDHIKGSCLKSFAPFPTGCMYHSESGLKSFEHPSFKMKAMPRVDSEGAMCGACFKVDVYSKVNSMPRVGSSANWANWGQQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58093" e_stop="58138"/>
            <exon e_start="58562" e_stop="58682"/>
            <exon e_start="58835" e_stop="59081"/>
            <exon e_start="59489" e_stop="59631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.772" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.866" e_score="0.975"/>
          <exon-intron don_prob="0.902" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="58093" e_stop="58138" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.772" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58139" i_stop="58561" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="58562" e_stop="58682" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.866">
            <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="58835" e_stop="59081" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59082" i_stop="59488" i_length="407"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59489" e_stop="59631" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58093" stop="58138"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59081"/>
              <exon start="59489" stop="59631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTG : GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG : GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAA : CTTACAAAGGAGGACGCAGAGAAAGCTGAGCAGGTCATCTCATCTTTGTCACCAGATGAGTTGGAAAGAATGGTGAGATGGGCAGCAAGGATTCAAACAGGAATACAAGTTCTCAAGATTACCAAAGATTTTGTCATGGCAAA</gDNA_template>
            <first_frame> G  L  E  G  S  Y  G  F  V  I  Y  D  H  K  A   : G  C  *  *  N  C  K  D  V  L  G  N  S  I  *  W  I  C  H  D  L  *  *  C  G  S  Y  Q  R  K  L  S  Q  I  I  C  S  L  P  N  R :   V  H  V  P  Q  *  K  W  I  E  E  L  *  A  S  K  F  Q  D  E  S  N  A  K  S  G  *  *  R  S  H  V  W  S  L  L  Q  S  *  C  L  L  Q  G  E  *  H  A  K  S  W  K  F  C  Q  L  G  *  L  G  P  A  G  L  G  S  F  G  P  H  F  N  *  L  Q  Y  K  E  E  K  K  K  :  L  T  K  E  D  A  E  K  A  E  Q  V  I  S  S  L  S  P  D  E  L  E  R  M  V  R  W  A  A  R  I  Q  T  G  I  Q  V  L  K  I  T  K  D  F  V  M  A   </first_frame>
            <second_frame>  D  L  R  V  A  M  A  L  *  S  M  I  I  R  L  :  G  A  D  E  T  A  K  M  F  W  G  I  A  S  D  G  S  V  M  I  S  D  N  V  D  H  I  K  G  S  C  L  K  S  F  A  P  F  P  T   : G  C  M  Y  H  S  E  S  G  L  K  S  F  E  H  P  S  F  K  M  K  A  M  P  R  V  D  S  E  G  A  M  C  G  A  C  F  K  V  D  V  Y  S  K  V  N  S  M  P  R  V  G  S  S  A  N  W  A  N  W  G  Q  Q  A  *  V  H  L  D  L  T  L  T  N  Y  N  I  K  K  K  R  K  N :   L  Q  R  R  T  Q  R  K  L  S  R  S  S  H  L  C  H  Q  M  S  W  K  E  W  *  D  G  Q  Q  G  F  K  Q  E  Y  K  F  S  R  L  P  K  I  L  S  W  Q  </second_frame>
            <third_frame>   T  *  G  *  L  W  L  C  D  L  *  S  *  G  W :   V  L  M  K  L  Q  R  C  S  G  E  *  H  L  M  D  L  S  *  S  L  I  M  W  I  I  S  K  E  A  V  S  N  H  L  L  P  S  Q  P  :  G  A  C  T  T  V  K  V  D  *  R  A  L  S  I  Q  V  S  R  *  K  Q  C  Q  E  W  I  V  K  E  P  C  V  E  L  A  S  K  L  M  S  T  P  R  *  I  A  C  Q  E  L  E  V  L  P  T  G  L  I  G  A  S  R  L  R  F  I  W  T  S  L  *  L  T  T  I  *  R  R  K  E  K   : T  Y  K  G  G  R  R  E  S  *  A  G  H  L  I  F  V  T  R  *  V  G  K  N  G  E  M  G  S  K  D  S  N  R  N  T  S  S  Q  D  Y  Q  R  F  C  H  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58121" stop="58138"/>
                    <exon start="58562" stop="58682"/>
                    <exon start="58835" stop="59028"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMIIRLGADETAKMFWGIASDGSVMISDNVDHIKGSCLKSFAPFPTGCMYHSESGLKSFEHPSFKMKAMPRVDSEGAMCGACFKVDVYSKVNSMPRVGSSANWANWGQQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="57567" e_stop="57672"/>
            <exon e_start="57918" e_stop="58577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.996" e_score="0.991"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="57567" e_stop="57672" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="57918" e_stop="58577" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57567" stop="57672"/>
              <exon start="57918" stop="58577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG : GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTG</gDNA_template>
            <first_frame> R  I  S  *  L  Q  I  P  T  M  G  F  L  L  D  S  W  T  R  H  S  W  P  I  P  N  L  H  P  H  Q  M  L  N  K   : G  C  S  V  G  *  M  T  Y  T  A  F  S  W  E  A  *  I  T  Y  G  H  *  T  S  S  M  V  C  Q  R  V  P  M  R  P  C  L  *  V  K  H  I  V  P  F  V  T  E  V  H  S  Q  L  M  R  F  S  R  D  L  R  V  A  M  A  L  *  S  M  I  I  R  L  V  M  S  L  L  P  L  *  V  L  F  *  F  *  S  L  S  P  S  I  C  N  F  *  *  W  *  F  S  S  L  L  V  L  S  T  S  T  I  H  *  S  T  C  C  L  L  P  T  Q  L  C  H  N  C  L  L  R  L  R  Q  I  E  R  N  D  F  S  R  F  Y  L  F  L  A  V  T  I  T  K  R  K  C  I  V  S  I  N  V  Y  K  Q  H  F  L  T  L  I  G  D  G  M  M  V  I  S  I  L  K  G  N  I  Y  N  R  S  F  I  I  F  Y  *  D  I  I  S  F  F  S  L  S  L  N  V  M  N  C  V  Y  V  *  G  A  D  E  T  </first_frame>
            <second_frame>  E  F  L  S  F  K  Y  Q  Q  W  V  F  Y  W  I  H  G  Q  G  I  L  G  L  F  Q  T  S  I  L  I  K  C  S  T  K  :  V  V  L  W  V  E  *  H  I  L  H  F  L  G  K  L  E  *  L  M  G  T  K  Q  A  V  W  S  V  K  G  Y  Q  *  G  H  A  C  E  *  S  I  S  Y  P  S  *  Q  R  S  I  P  S  S  *  G  S  Q  G  T  *  G  *  L  W  L  C  D  L  *  S  *  G  W  *  C  L  C  C  P  C  E  F  F  S  S  S  K  V  Y  P  H  Q  Y  A  I  F  N  N  G  S  F  Q  A  C  *  C  *  A  P  Q  L  F  I  R  V  H  V  A  S  Y  Q  H  S  Y  V  I  T  A  Y  *  G  L  G  R  *  K  E  M  I  L  A  D  S  I  S  F  L  Q  L  Q  S  P  K  E  S  A  L  S  L  *  M  Y  I  N  N  I  F  L  L  *  L  E  M  E  *  W  *  Y  Q  S  *  K  G  T  Y  T  I  D  H  L  L  Y  S  I  K  T  *  F  P  F  F  L  F  H  *  M  S  *  I  V  S  M  Y  R  V  L  M  K  L </second_frame>
            <third_frame>   N  F  L  A  S  N  T  N  N  G  F  S  I  G  F  M  D  K  A  F  L  A  Y  S  K  P  P  S  S  S  N  A  Q  Q  R :   L  F  C  G  L  N  D  I  Y  C  I  F  L  G  S  L  N  N  L  W  A  L  N  K  Q  Y  G  L  S  K  G  T  N  E  A  M  L  V  S  E  A  Y  R  T  L  R  D  R  G  P  F  P  A  H  E  V  L  K  G  L  E  G  S  Y  G  F  V  I  Y  D  H  K  A  G  N  V  F  V  A  L  V  S  S  F  L  V  L  K  F  I  P  I  N  M  Q  F  L  I  M  V  V  F  K  P  V  S  A  E  H  L  N  Y  S  L  E  Y  M  L  P  L  T  N  T  A  M  S  *  L  P  T  K  A  *  A  D  R  K  K  *  F  *  Q  I  L  S  L  S  C  S  Y  N  H  Q  K  K  V  H  C  L  Y  K  C  I  *  T  T  F  S  Y  S  N  W  R  W  N  D  G  D  I  N  L  E  R  E  H  I  Q  *  I  I  Y  Y  I  L  L  R  H  N  F  L  F  F  S  F  I  E  C  H  E  L  C  L  C  I  G  C  *  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57569" stop="57672"/>
                    <exon start="57918" stop="58299"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLASNTNNGFSIGFMDKAFLAYSKPPSSSNAQQRLFCGLNDIYCIFLGSLNNLWALNKQYGLSKGTNEAMLVSEAYRTLRDRGPFPAHEVLKGLEGSYGFVIYDHKAGNVFVALVSSFLVLKFIPINMQFLIMVVFKPVSAEHLNYSLEYMLPLTNTAMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="59809" PGL_stop="59393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59809" e_stop="59393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="59809" e_stop="59393" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59809" stop="59393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCCAGCACTGTTTAGTGCTGTTCTGTATAGAATTTTATTAACTTATAAGAAAAAATGAATGAATTTTCCTAACATGACAAGAAAATATAAAAGAACAGAAAAAGCTCAGATGTAGCCAAACAGGTGAAGGAAGACTGCAAAAATGGGCACAAAAAGTGCCAAGCTCATGCCAGGATTTGCCATGACAAAATCTTTGGTAATCTTGAGAACTTGTATTCCTGTTTGAATCCTTGCTGCCCATCTCACCATTCTTTCCAACTCATCTGGTGACAAAGATGAGATGACCTGCTCAGCTTTCTCTGCGTCCTCCTTTGTAAGCTTCAAATTCAAATTGTTCACTCATGTTAGTGAGTATCCAACCATCCATCTCTGAATAATTTCATAGTGGTTGAAATGAATTATTTTAGGGATGAG</gDNA_template>
            <first_frame> I  S  S  T  V  *  C  C  S  V  *  N  F  I  N  L  *  E  K  M  N  E  F  S  *  H  D  K  K  I  *  K  N  R  K  S  S  D  V  A  K  Q  V  K  E  D  C  K  N  G  H  K  K  C  Q  A  H  A  R  I  C  H  D  K  I  F  G  N  L  E  N  L  Y  S  C  L  N  P  C  C  P  S  H  H  S  F  Q  L  I  W  *  Q  R  *  D  D  L  L  S  F  L  C  V  L  L  C  K  L  Q  I  Q  I  V  H  S  C  *  *  V  S  N  H  P  S  L  N  N  F  I  V  V  E  M  N  Y  F  R  D  E </first_frame>
            <second_frame>  Y  P  A  L  F  S  A  V  L  Y  R  I  L  L  T  Y  K  K  K  *  M  N  F  P  N  M  T  R  K  Y  K  R  T  E  K  A  Q  M  *  P  N  R  *  R  K  T  A  K  M  G  T  K  S  A  K  L  M  P  G  F  A  M  T  K  S  L  V  I  L  R  T  C  I  P  V  *  I  L  A  A  H  L  T  I  L  S  N  S  S  G  D  K  D  E  M  T  C  S  A  F  S  A  S  S  F  V  S  F  K  F  K  L  F  T  H  V  S  E  Y  P  T  I  H  L  *  I  I  S  *  W  L  K  *  I  I  L  G  M   </second_frame>
            <third_frame>   I  Q  H  C  L  V  L  F  C  I  E  F  Y  *  L  I  R  K  N  E  *  I  F  L  T  *  Q  E  N  I  K  E  Q  K  K  L  R  C  S  Q  T  G  E  G  R  L  Q  K  W  A  Q  K  V  P  S  S  C  Q  D  L  P  *  Q  N  L  W  *  S  *  E  L  V  F  L  F  E  S  L  L  P  I  S  P  F  F  P  T  H  L  V  T  K  M  R  *  P  A  Q  L  S  L  R  P  P  L  *  A  S  N  S  N  C  S  L  M  L  V  S  I  Q  P  S  I  S  E  *  F  H  S  G  *  N  E  L  F  *  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="70295" PGL_stop="65803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70295" e_stop="70211"/>
            <exon e_start="69484" e_stop="69248"/>
            <exon e_start="69090" e_stop="68919"/>
            <exon e_start="68812" e_stop="68331"/>
            <exon e_start="66630" e_stop="66454"/>
            <exon e_start="66171" e_stop="65803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="0.988"/>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.815" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.555" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="70295" e_stop="70211" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70210" i_stop="69485" i_length="726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69484" e_stop="69248" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="69247" i_stop="69091" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="69090" e_stop="68919" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.815">
            <gDNA_intron_boundary i_start="68918" i_stop="68813" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="68812" e_stop="68331" e_length="482"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68330" i_stop="66631" i_length="1700"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66630" e_stop="66454" e_length="177"/>
          </exon>
          <intron i_serial="5" don_prob="0.555" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66453" i_stop="66172" i_length="282"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="66171" e_stop="65803" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70295" stop="70211"/>
              <exon start="69484" stop="69248"/>
              <exon start="69090" stop="68919"/>
              <exon start="68812" stop="68331"/>
              <exon start="66630" stop="66454"/>
              <exon start="66171" stop="65803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTGCTTTGAACAGTGTCATTGCTGTACTGGATGCAGATTTCCATTCCCTCCCTTCAACTCAGCATAGACAGCAGTATGGACCG : AGTCTAGACAGGATAAAATGCAGGCTTCTAGAAGGTACAAATGCTCAAGAAGTCCGGGCAATGGTGCTTGACATGCAAGCAAGATTGTTGCTAGATATGCTTGGCAAGGGAATCGAATCAGCTTTAACAAACCCATCAGCATTGGTTCCGGAGCCATGGCAAGCTTCTAGCGAGACACTGTTTGGTATTGATCCTGAGGCGATGGCTGTTGAACCATCACTTGTGCCAAGTATCCAG : GCATATGTAGATGCGATACTGGATCTGGCGTCTCATTTCATCACGCGCTTACGGCGCTATGCAAGTTTCTGCCGTACATTGGCTAGTCATGCTGTTACTGCAGGTACAGGTGGGAGTAGGAGTATGGTGACTAGTCCTACTCAAAGTGCTTCATCTCCTGCCACTTCCCAGG : GTGCTCAGGGTGGTACTGCAAGTTCTGCTGGGAGCACTCAGATGCAAGCTTGGGTACAAGGAGCTATAGCAAAAATTAGCAGTACAGCCGACAGTGTTCCTAGTTCAGCCCCAAACCCCATCACTGGTCCTTCTACATTTATGCCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAG : GTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAG : AATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTAGGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTTCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCTCGACGAGATGTTGTGACAGCTGTTTGGAAGACTGGGCTTGAAGGGGTTTGGTACAAG</gDNA_template>
            <first_frame> S  C  F  E  Q  C  H  C  C  T  G  C  R  F  P  F  P  P  F  N  S  A  *  T  A  V  W  T   : E  S  R  Q  D  K  M  Q  A  S  R  R  Y  K  C  S  R  S  P  G  N  G  A  *  H  A  S  K  I  V  A  R  Y  A  W  Q  G  N  R  I  S  F  N  K  P  I  S  I  G  S  G  A  M  A  S  F  *  R  D  T  V  W  Y  *  S  *  G  D  G  C  *  T  I  T  C  A  K  Y  P   : G  I  C  R  C  D  T  G  S  G  V  S  F  H  H  A  L  T  A  L  C  K  F  L  P  Y  I  G  *  S  C  C  Y  C  R  Y  R  W  E  *  E  Y  G  D  *  S  Y  S  K  C  F  I  S  C  H  F  P  G :   C  S  G  W  Y  C  K  F  C  W  E  H  S  D  A  S  L  G  T  R  S  Y  S  K  N  *  Q  Y  S  R  Q  C  S  *  F  S  P  K  P  H  H  W  S  F  Y  I  Y  A  D  K  Y  Q  H  W  H  F  P  W  N  S  G  C  *  A  Y  R  G  L  P  F  S  S  S  A  M  S  T  S  A  F  L  F  F  L  P  W  N  T  I  T  A  F  Y  G  G  C  S  K  E  C  *  F  F  N  A  K  T  S  V  R  Y  S  R  Q  N  R  R  F  Q  L  W  C  K  T  N  A  R  R  S  G  W  N  R  S  K  G  V  *  R  R  S  I  *  T  V  *  D  W  F  W  K  C  W  S  R  I  H  I  *  G   : G  E  G  P  F  S  Y  S  D  G  S  L  S  P  D  C  W  F  G  T  S  A  A  S  F  S  G  W  E  Q  Q  H  S  G  P  P  S  L  Y  *  W  E  L  Y  C  I  A  G  S  S  *  S  F  P  G  T  S  H  A   : E  Y  A  *  A  *  R  C  R  C  C  W  A  A  I  A  *  V  R  T  P  S  T  C  *  G  M  A  Q  E  K  Y  V  W  W  T  L  V  *  S  R  R  C  G  *  Q  F  *  A  *  P  I  K  G  F  D  T  V  Q  L  I  R  K  L  *  C  I  L  W  S  S  W  F  V  A  *  E  T  Q  D  V  *  K  R  C  C  F  W  A  E  Y  F  S  G  A  G  C  I  S  W  Y  N  G  I  S  T  R  C  C  D  S  C  L  E  D  W  A  *  R  G  L  V  Q  </first_frame>
            <second_frame>  V  A  L  N  S  V  I  A  V  L  D  A  D  F  H  S  L  P  S  T  Q  H  R  Q  Q  Y  G  P  :  S  L  D  R  I  K  C  R  L  L  E  G  T  N  A  Q  E  V  R  A  M  V  L  D  M  Q  A  R  L  L  L  D  M  L  G  K  G  I  E  S  A  L  T  N  P  S  A  L  V  P  E  P  W  Q  A  S  S  E  T  L  F  G  I  D  P  E  A  M  A  V  E  P  S  L  V  P  S  I  Q  :  A  Y  V  D  A  I  L  D  L  A  S  H  F  I  T  R  L  R  R  Y  A  S  F  C  R  T  L  A  S  H  A  V  T  A  G  T  G  G  S  R  S  M  V  T  S  P  T  Q  S  A  S  S  P  A  T  S  Q   : G  A  Q  G  G  T  A  S  S  A  G  S  T  Q  M  Q  A  W  V  Q  G  A  I  A  K  I  S  S  T  A  D  S  V  P  S  S  A  P  N  P  I  T  G  P  S  T  F  M  P  I  S  I  N  T  G  T  F  P  G  T  P  A  V  R  L  I  G  D  C  H  F  L  H  R  L  C  Q  L  L  H  F  C  F  F  F  R  G  T  Q  L  P  R  F  M  G  A  A  Q  R  N  A  D  S  S  M  Q  K  P  Q  S  G  I  P  G  K  T  E  D  S  N  S  G  A  K  P  T  L  G  G  Q  V  G  T  G  A  K  G  S  E  E  G  P  S  K  R  S  R  I  G  S  G  N  A  G  Q  G  Y  T  Y  E  E  :  V  K  V  L  F  L  I  L  M  D  L  C  R  R  T  A  G  L  V  H  P  L  P  V  S  Q  V  G  S  N  N  I  Q  V  R  L  H  Y  I  D  G  N  Y  T  V  L  P  E  V  V  E  A  S  L  G  P  H  M  Q  :  N  M  P  R  P  R  G  A  D  A  A  G  L  L  L  R  E  L  E  L  H  P  P  A  E  E  W  H  R  R  N  M  F  G  G  P  W  S  D  P  E  D  V  D  D  N  S  K  L  S  P  S  R  D  L  T  Q  Y  S  S  L  E  N  C  D  V  Y  Y  G  A  H  G  L  W  P  R  K  R  R  M  S  E  R  D  A  A  F  G  L  N  T  S  V  G  L  G  A  Y  L  G  I  M  G  S  R  R  D  V  V  T  A  V  W  K  T  G  L  E  G  V  W  Y  K </second_frame>
            <third_frame>   L  L  *  T  V  S  L  L  Y  W  M  Q  I  S  I  P  S  L  Q  L  S  I  D  S  S  M  D  R :   V  *  T  G  *  N  A  G  F  *  K  V  Q  M  L  K  K  S  G  Q  W  C  L  T  C  K  Q  D  C  C  *  I  C  L  A  R  E  S  N  Q  L  *  Q  T  H  Q  H  W  F  R  S  H  G  K  L  L  A  R  H  C  L  V  L  I  L  R  R  W  L  L  N  H  H  L  C  Q  V  S  R :   H  M  *  M  R  Y  W  I  W  R  L  I  S  S  R  A  Y  G  A  M  Q  V  S  A  V  H  W  L  V  M  L  L  L  Q  V  Q  V  G  V  G  V  W  *  L  V  L  L  K  V  L  H  L  L  P  L  P  R  :  V  L  R  V  V  L  Q  V  L  L  G  A  L  R  C  K  L  G  Y  K  E  L  *  Q  K  L  A  V  Q  P  T  V  F  L  V  Q  P  Q  T  P  S  L  V  L  L  H  L  C  R  *  V  S  T  L  A  L  S  L  E  L  R  L  L  G  L  *  G  T  A  I  F  F  I  G  Y  V  N  F  C  I  S  V  F  S  S  V  E  H  N  Y  R  V  L  W  G  L  L  K  G  M  L  I  L  Q  C  K  N  L  S  P  V  F  Q  A  K  Q  K  I  P  T  L  V  Q  N  Q  R  *  A  V  R  L  E  Q  E  Q  R  G  L  K  K  V  H  L  N  G  L  G  L  V  L  E  M  L  V  K  D  T  H  M  R  R :   *  R  S  F  F  L  F  *  W  I  F  V  A  G  L  L  V  W  Y  I  R  C  Q  F  L  R  L  G  A  T  T  F  R  S  A  F  I  I  L  M  G  T  I  L  Y  C  R  K  *  L  K  L  P  W  D  L  T  C  R :   I  C  L  G  L  E  V  Q  M  L  L  G  C  Y  C  V  S  *  N  S  I  H  L  L  R  N  G  T  G  E  I  C  L  V  D  L  G  L  I  Q  K  M  W  M  T  I  L  S  L  A  H  Q  G  I  *  H  S  T  A  H  *  K  T  V  M  Y  I  M  E  L  M  V  C  G  L  G  N  A  G  C  L  K  E  M  L  L  L  G  *  I  L  Q  W  G  W  V  H  I  L  V  *  W  D  L  D  E  M  L  *  Q  L  F  G  R  L  G  L  K  G  F  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70294" stop="70211"/>
                    <exon start="69484" stop="69248"/>
                    <exon start="69090" stop="68919"/>
                    <exon start="68812" stop="68331"/>
                    <exon start="66630" stop="66454"/>
                    <exon start="66171" stop="65803"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VALNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALTNPSALVPEPWQASSETLFGIDPEAMAVEPSLVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSASSPATSQGAQGGTASSAGSTQMQAWVQGAIAKISSTADSVPSSAPNPITGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLHFCFFFRGTQLPRFMGAAQRNADSSMQKPQSGIPGKTEDSNSGAKPTLGGQVGTGAKGSEEGPSKRSRIGSGNAGQGYTYEEVKVLFLILMDLCRRTAGLVHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVDDNSKLSPSRDLTQYSSLENCDVYYGAHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="71301" PGL_stop="70711"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71301" e_stop="70711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71301" e_stop="70711" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71301" stop="70711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATAGGTTAACTATGGATATGATGCCGGAAACAGACCAATTTTATATCACCCTTCAATGTGAATTAGCAAAAGCGATGTCTCCTTCCATACTATGGATACCAAAAATTCATTATCTGGATTTGAATGAGTCTATGACAGGATTTATGATTGTTTGCTATTTGATGTGTTAATAGGAATCCTGACTAAAGAGTTCTGAAATAAAAAATTTCATTCCTGTTCTACTTGTGAGGTAATCAGTAATCAGTCTCTGTACTGATCACCAGGTTCAAGTAATGTGCCCCCCACCTTTTGCAATATATGGATTCTAAAGAATTGAAATGTCATATCTTCAATTTAGAGTTGCATACATGTTCCTTTTATAGCACTAATTTTTTTGCTTAATCGTTGGTCATTCTGCTGCAAGATCTTTACTTGGGTTTCATGGACTGCAAAATAAAATTTTTATAGCAGTTTTAGTTTGTTGAAATTCTTGTGTAGTTTGGAGGGTATTACCTGTCCTTGCATGCTTGCTTTCCTTGTTTTTCGTCTCTTCTGCTTTGATTCTGAATAATTGAAGACAGTTATTCCACTTCCATGACATCCTCAGCT</gDNA_template>
            <first_frame> *  I  G  *  L  W  I  *  C  R  K  Q  T  N  F  I  S  P  F  N  V  N  *  Q  K  R  C  L  L  P  Y  Y  G  Y  Q  K  F  I  I  W  I  *  M  S  L  *  Q  D  L  *  L  F  A  I  *  C  V  N  R  N  P  D  *  R  V  L  K  *  K  I  S  F  L  F  Y  L  *  G  N  Q  *  S  V  S  V  L  I  T  R  F  K  *  C  A  P  H  L  L  Q  Y  M  D  S  K  E  L  K  C  H  I  F  N  L  E  L  H  T  C  S  F  Y  S  T  N  F  F  A  *  S  L  V  I  L  L  Q  D  L  Y  L  G  F  M  D  C  K  I  K  F  L  *  Q  F  *  F  V  E  I  L  V  *  F  G  G  Y  Y  L  S  L  H  A  C  F  P  C  F  S  S  L  L  L  *  F  *  I  I  E  D  S  Y  S  T  S  M  T  S  S  A </first_frame>
            <second_frame>  E  *  V  N  Y  G  Y  D  A  G  N  R  P  I  L  Y  H  P  S  M  *  I  S  K  S  D  V  S  F  H  T  M  D  T  K  N  S  L  S  G  F  E  *  V  Y  D  R  I  Y  D  C  L  L  F  D  V  L  I  G  I  L  T  K  E  F  *  N  K  K  F  H  S  C  S  T  C  E  V  I  S  N  Q  S  L  Y  *  S  P  G  S  S  N  V  P  P  T  F  C  N  I  W  I  L  K  N  *  N  V  I  S  S  I  *  S  C  I  H  V  P  F  I  A  L  I  F  L  L  N  R  W  S  F  C  C  K  I  F  T  W  V  S  W  T  A  K  *  N  F  Y  S  S  F  S  L  L  K  F  L  C  S  L  E  G  I  T  C  P  C  M  L  A  F  L  V  F  R  L  F  C  F  D  S  E  *  L  K  T  V  I  P  L  P  *  H  P  Q   </second_frame>
            <third_frame>   N  R  L  T  M  D  M  M  P  E  T  D  Q  F  Y  I  T  L  Q  C  E  L  A  K  A  M  S  P  S  I  L  W  I  P  K  I  H  Y  L  D  L  N  E  S  M  T  G  F  M  I  V  C  Y  L  M  C  *  *  E  S  *  L  K  S  S  E  I  K  N  F  I  P  V  L  L  V  R  *  S  V  I  S  L  C  T  D  H  Q  V  Q  V  M  C  P  P  P  F  A  I  Y  G  F  *  R  I  E  M  S  Y  L  Q  F  R  V  A  Y  M  F  L  L  *  H  *  F  F  C  L  I  V  G  H  S  A  A  R  S  L  L  G  F  H  G  L  Q  N  K  I  F  I  A  V  L  V  C  *  N  S  C  V  V  W  R  V  L  P  V  L  A  C  L  L  S  L  F  F  V  S  S  A  L  I  L  N  N  *  R  Q  L  F  H  F  H  D  I  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="81464" PGL_stop="73005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81464" e_stop="80837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="81464" e_stop="80837" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81464" stop="80837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCAAATGAACAATCAACAACCACCTGTTGCTAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGTTGCTGATCGAAGTGTTGACTTGT</gDNA_template>
            <first_frame> Y  S  N  E  Q  S  T  T  T  C  C  *  R  Y  *  S  G  E  G  G  R  V  F  F  C  D  Y  Q  F  S  R  T  F  Y  *  *  G  S  R  E  T  G  Y  H  Y  *  R  R  R  R  R  S  S  C  C  N  C  G  Y  G  D  G  E  G  G  L  F  C  *  R  *  S  H  G  *  G  Y  C  Q  S  C  C  R  L  L  Y  *  A  Q  T  T  *  V  K  F  A  S  *  N  E  C  S  *  T  L  P  Q  F  Q  V  I  F  *  N  F  V  Y  A  T  S  Q  F  W  L  H  D  L  E  D  D  I  N  I  F  F  P  Y  N  *  S  K  D  T  I  E  F  K  K  S  R  K  S  E  I  S  L  L  E  V  Y  L  V  M  L  E  V  E  N  L  L  E  L  R  S  L  T  V  E  A  V  E  V  T  E  L  S  S  K  V  A  V  R  *  A  H  C  L  K  *  *  L  V  A  D  R  S  V  D  L  </first_frame>
            <second_frame>  I  Q  M  N  N  Q  Q  P  P  V  A  K  D  T  E  V  E  K  E  E  E  S  S  S  V  I  T  N  S  L  E  P  S  T  N  K  V  H  E  K  P  D  I  I  I  E  D  D  D  D  D  H  P  A  A  I  V  A  M  V  T  E  K  E  V  S  S  V  D  D  D  P  M  D  E  D  T  V  N  P  A  V  V  F  C  I  R  L  K  Q  P  R  S  N  L  L  H  K  M  S  V  P  E  L  C  R  N  F  R  *  F  F  K  I  L  F  M  L  H  L  N  S  G  Y  M  T  *  K  M  I  S  I  F  F  F  L  I  T  K  V  R  I  R  S  N  L  K  K  A  E  K  V  R  L  V  C  *  R  F  T  *  L  C  W  K  W  R  T  C  W  N  F  A  V  *  L  L  R  R  W  K  S  L  N  *  V  L  K  L  L  Y  V  E  L  T  A  S  S  D  S  *  L  L  I  E  V  L  T  C </second_frame>
            <third_frame>   F  K  *  T  I  N  N  H  L  L  L  K  I  L  K  W  R  R  R  K  S  L  L  L  *  L  P  I  L  *  N  L  L  L  I  R  F  T  R  N  R  I  S  L  L  K  T  T  T  T  I  I  L  L  Q  L  W  L  W  *  R  R  R  R  S  L  L  L  T  M  I  P  W  M  R  I  L  S  I  L  L  S  S  F  V  L  G  S  N  N  L  G  Q  I  C  F  I  K  *  V  F  L  N  F  A  A  I  S  G  D  F  L  K  F  C  L  C  Y  I  S  I  L  A  T  *  L  R  R  *  Y  Q  Y  F  F  S  L  *  L  K  *  G  Y  D  R  I  *  K  K  Q  K  K  *  D  *  S  V  R  G  L  L  S  Y  A  G  S  G  E  L  V  G  T  S  Q  F  N  C  *  G  G  G  S  H  *  I  E  F  *  S  C  C  T  L  S  S  L  P  Q  V  I  A  S  C  *  S  K  C  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81463" stop="81134"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQMNNQQPPVAKDTEVEKEEESSSVITNSLEPSTNKVHEKPDIIIEDDDDDHPAAIVAMVTEKEVSSVDDDPMDEDTVNPAVVFCIRLKQPRSNLLHKMSVPELCRNFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81431" e_stop="81138"/>
            <exon e_start="77240" e_stop="77172"/>
            <exon e_start="76998" e_stop="76910"/>
            <exon e_start="75888" e_stop="75776"/>
            <exon e_start="75329" e_stop="75228"/>
            <exon e_start="75149" e_stop="75065"/>
            <exon e_start="73041" e_stop="73005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.924" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.667" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="0.953"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="81431" e_stop="81138" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.994">
            <gDNA_intron_boundary i_start="81137" i_stop="77241" i_length="3897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77240" e_stop="77172" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77171" i_stop="76999" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76998" e_stop="76910" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.667" acc_prob="0.791">
            <gDNA_intron_boundary i_start="76909" i_stop="75889" i_length="1021"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75888" e_stop="75776" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75775" i_stop="75330" i_length="446"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="75329" e_stop="75228" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.852" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75227" i_stop="75150" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.953">
            <gDNA_exon_boundary e_start="75149" e_stop="75065" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="75064" i_stop="73042" i_length="2023"/>
          </intron>
          <exon e_serial="7" e_score="0.919">
            <gDNA_exon_boundary e_start="73041" e_stop="73005" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81431" stop="81138"/>
              <exon start="77240" stop="77172"/>
              <exon start="76998" stop="76910"/>
              <exon start="75888" stop="75776"/>
              <exon start="75329" stop="75228"/>
              <exon start="75149" stop="75065"/>
              <exon start="73041" stop="73005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAG : TGCTGTTGCTTGGTGTGGAAAGCTAAATGCAATAGCTTGTGCGTCTGAAACATGTGCAAGGATTCCAAG : TTCAAATGCAAATCCACCTTTCTGGATCCCTATACATATCGTCATCCCAGAGCGACCAACTGAGTGCACTGTGTTCAATGTTATAGCAG : ACTCCCCTCGTGATTCCGTCCAATTCATTGAATGGTCTCCAACTTCGTGTCCACGTGCACTACTCATAGCTAACTTTCATGGGAGAATAACAATCTGGACTCAGCCTTCACAA : GGTTCAGCTAATCTGGTACGAGATGCTAGTTGTTGGCAGCGAGATTACGAATGGCATCAAGATATTGCAGTTGTTACAAAGTGGTTATCAGGAGTTTCTCCG : TATAGGTGGCTTTCAACAAGAACGGGCGGTTCCGCTAAGTCAACATTTGAGGAGAAATTCCTTTCGCAGCAACCACAATCTCCAG : CTGGATGGCCAAATTTTCTGTGTGTATGCTCTGTCTT</gDNA_template>
            <first_frame> *  R  Y  *  S  G  E  G  G  R  V  F  F  C  D  Y  Q  F  S  R  T  F  Y  *  *  G  S  R  E  T  G  Y  H  Y  *  R  R  R  R  R  S  S  C  C  N  C  G  Y  G  D  G  E  G  G  L  F  C  *  R  *  S  H  G  *  G  Y  C  Q  S  C  C  R  L  L  Y  *  A  Q  T  T  *  V  K  F  A  S  *  N  E  C  S  *  T  L  P  Q  F  Q  :  C  C  C  L  V  W  K  A  K  C  N  S  L  C  V  *  N  M  C  K  D  S  K  :  F  K  C  K  S  T  F  L  D  P  Y  T  Y  R  H  P  R  A  T  N  *  V  H  C  V  Q  C  Y  S  R :   L  P  S  *  F  R  P  I  H  *  M  V  S  N  F  V  S  T  C  T  T  H  S  *  L  S  W  E  N  N  N  L  D  S  A  F  T   : R  F  S  *  S  G  T  R  C  *  L  L  A  A  R  L  R  M  A  S  R  Y  C  S  C  Y  K  V  V  I  R  S  F  S   : V  *  V  A  F  N  K  N  G  R  F  R  *  V  N  I  *  G  E  I  P  F  A  A  T  T  I  S  S :   W  M  A  K  F  S  V  C  M  L  C  L </first_frame>
            <second_frame>  K  D  T  E  V  E  K  E  E  E  S  S  S  V  I  T  N  S  L  E  P  S  T  N  K  V  H  E  K  P  D  I  I  I  E  D  D  D  D  D  H  P  A  A  I  V  A  M  V  T  E  K  E  V  S  S  V  D  D  D  P  M  D  E  D  T  V  N  P  A  V  V  F  C  I  R  L  K  Q  P  R  S  N  L  L  H  K  M  S  V  P  E  L  C  R  N  F  S :   A  V  A  W  C  G  K  L  N  A  I  A  C  A  S  E  T  C  A  R  I  P  S :   S  N  A  N  P  P  F  W  I  P  I  H  I  V  I  P  E  R  P  T  E  C  T  V  F  N  V  I  A   : D  S  P  R  D  S  V  Q  F  I  E  W  S  P  T  S  C  P  R  A  L  L  I  A  N  F  H  G  R  I  T  I  W  T  Q  P  S  Q  :  G  S  A  N  L  V  R  D  A  S  C  W  Q  R  D  Y  E  W  H  Q  D  I  A  V  V  T  K  W  L  S  G  V  S  P  :  Y  R  W  L  S  T  R  T  G  G  S  A  K  S  T  F  E  E  K  F  L  S  Q  Q  P  Q  S  P   : A  G  W  P  N  F  L  C  V  C  S  V   </second_frame>
            <third_frame>   K  I  L  K  W  R  R  R  K  S  L  L  L  *  L  P  I  L  *  N  L  L  L  I  R  F  T  R  N  R  I  S  L  L  K  T  T  T  T  I  I  L  L  Q  L  W  L  W  *  R  R  R  R  S  L  L  L  T  M  I  P  W  M  R  I  L  S  I  L  L  S  S  F  V  L  G  S  N  N  L  G  Q  I  C  F  I  K  *  V  F  L  N  F  A  A  I  S   : V  L  L  L  G  V  E  S  *  M  Q  *  L  V  R  L  K  H  V  Q  G  F  Q   : V  Q  M  Q  I  H  L  S  G  S  L  Y  I  S  S  S  Q  S  D  Q  L  S  A  L  C  S  M  L  *  Q  :  T  P  L  V  I  P  S  N  S  L  N  G  L  Q  L  R  V  H  V  H  Y  S  *  L  T  F  M  G  E  *  Q  S  G  L  S  L  H  K :   V  Q  L  I  W  Y  E  M  L  V  V  G  S  E  I  T  N  G  I  K  I  L  Q  L  L  Q  S  G  Y  Q  E  F  L  R :   I  G  G  F  Q  Q  E  R  A  V  P  L  S  Q  H  L  R  R  N  S  F  R  S  N  H  N  L  Q  :  L  D  G  Q  I  F  C  V  Y  A  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81430" stop="81138"/>
                    <exon start="77240" stop="77172"/>
                    <exon start="76998" stop="76910"/>
                    <exon start="75888" stop="75776"/>
                    <exon start="75329" stop="75228"/>
                    <exon start="75149" stop="75065"/>
                    <exon start="73041" stop="73007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDTEVEKEEESSSVITNSLEPSTNKVHEKPDIIIEDDDDDHPAAIVAMVTEKEVSSVDDDPMDEDTVNPAVVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGSANLVRDASCWQRDYEWHQDIAVVTKWLSGVSPYRWLSTRTGGSAKSTFEEKFLSQQPQSPAGWPNFLCVCSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="89149" PGL_stop="91197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89149" e_stop="89171"/>
            <exon e_start="90020" e_stop="90168"/>
            <exon e_start="90353" e_stop="90465"/>
            <exon e_start="90724" e_stop="90934"/>
            <exon e_start="91016" e_stop="91197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89149" e_stop="89171" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="89172" i_stop="90019" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90020" e_stop="90168" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.960">
            <gDNA_intron_boundary i_start="90169" i_stop="90352" i_length="184"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90353" e_stop="90465" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90466" i_stop="90723" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90724" e_stop="90934" e_length="211"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90935" i_stop="91015" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="91016" e_stop="91197" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89149" stop="89171"/>
              <exon start="90020" stop="90168"/>
              <exon start="90353" stop="90465"/>
              <exon start="90724" stop="90934"/>
              <exon start="91016" stop="91197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGTGTTCCCCTCCCAAAGCAG : TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG : GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG : GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG : GTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAAGGATTATACACCAAAAATTGGAGATTTTGGGCTTGCT</gDNA_template>
            <first_frame> L  V  F  P  S  Q  S  S :   V  L  V  V  K  A  N  I  S  F  T  H  Q  K  A  L  S  I  D  L  D  T  L  I  D  M  S  C  C  F  F  G  D  R  K  K  G  H  D  L  V  H  H  D  T  R  D  A  G   : G  D  S  I  A  S  T  K  N  F  S  F  N  E  L  R  L  A  T  N  N  F  H  Q  I  N  K  I  G  R  G  G  F  G  T  V  Y  K  :  G  T  L  K  Q  G  K  D  V  A  V  K  T  L  A  A  E  S  R  Q  G  L  R  E  F  L  T  E  I  E  T  I  S  N  V  K  H  P  N  L  V  E  I  I  G  C  C  A  D  G  N  N  R  I  L  V  Y  E  Y  L  E  N  R  S  L  D  R  A  L  F   : G  S  R  T  S  I  K  L  E  W  E  K  R  T  T  I  C  L  G  T  A  R  G  L  A  Y  L  H  E  E  L  V  P  H  I  V  H  R  D  I  K  A  S  N  I  L  L  D  K  D  Y  T  P  K  I  G  D  F  G  L  A </first_frame>
            <second_frame>  W  C  S  P  P  K  A   : V  Y  W  W  *  R  L  T  F  H  L  L  I  K  R  H  Y  Q  L  I  *  T  R  *  L  T  *  V  V  A  S  L  A  T  G  K  R  V  M  I  S  F  T  M  I  Q  E  M  Q  E  :  V  T  P  L  Q  A  Q  R  I  F  H  L  M  N  *  D  *  Q  P  T  T  S  I  K  L  I  K  *  G  E  A  V  L  A  Q  Y  T  R :   E  L  *  N  K  E  K  M  L  L  *  R  H  *  Q  Q  N  Q  G  R  V  C  G  S  F  *  Q  K  L  R  Q  Y  Q  M  S  N  I  Q  I  *  L  R  *  L  D  A  V  L  M  E  I  T  G  F  W  S  M  N  I  *  K  I  E  A  L  I  G  H  C  L  :  V  Q  G  L  V  L  S  *  N  G  K  K  G  L  L  F  A  W  V  L  L  E  V  L  H  I  Y  M  K  N  *  C  H  I  *  C  T  G  I  *  K  L  V  I  F  C  L  T  R  I  I  H  Q  K  L  E  I  L  G  L   </second_frame>
            <third_frame>   G  V  P  L  P  K  Q  :  C  I  G  G  E  G  *  H  F  I  Y  S  S  K  G  T  I  N  *  F  R  H  A  N  *  H  E  L  L  L  L  W  R  P  E  K  G  S  *  S  R  S  P  *  Y  K  R  C  R  R :   *  L  H  C  K  H  K  E  F  F  I  *  *  I  K  I  S  N  Q  Q  L  P  S  N  *  *  N  R  A  R  R  F  W  H  S  I  Q   : G  N  S  K  T  R  K  R  C  C  C  E  D  T  S  S  R  I  K  A  G  F  A  G  V  F  D  R  N  *  D  N  I  K  C  Q  T  S  K  S  S  *  D  N  W  M  L  C  *  W  K  *  P  D  F  G  L  *  I  F  R  K  *  K  P  *  S  G  T  V  W :   F  K  D  *  Y  *  V  R  M  G  K  K  D  Y  Y  L  L  G  Y  C  S  R  S  C  I  S  T  *  R  T  S  A  T  Y  S  A  Q  G  Y  K  S  *  *  Y  S  A  *  Q  G  L  Y  T  K  N  W  R  F  W  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89149" stop="89171"/>
                    <exon start="90020" stop="90168"/>
                    <exon start="90353" stop="90465"/>
                    <exon start="90724" stop="90934"/>
                    <exon start="91016" stop="91197"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFPSQSSVLVVKANISFTHQKALSIDLDTLIDMSCCFFGDRKKGHDLVHHDTRDAGGDSIASTKNFSFNELRLATNNFHQINKIGRGGFGTVYKGTLKQGKDVAVKTLAAESRQGLREFLTEIETISNVKHPNLVEIIGCCADGNNRILVYEYLENRSLDRALFGSRTSIKLEWEKRTTICLGTARGLAYLHEELVPHIVHRDIKASNILLDKDYTPKIGDFGLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="93181" PGL_stop="93992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93181" e_stop="93992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="93181" e_stop="93992" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93181" stop="93992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTGGTGGATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAAATATTCTTTCAAAATAATATTTTATCAAGAT</gDNA_template>
            <first_frame> E  L  V  D  E  E  L  D  E  F  P  E  R  E  V  V  R  Y  I  K  T  A  L  F  C  T  Q  A  N  A  N  R  R  P  M  M  S  Q  V  I  E  M  L  S  R  D  I  Q  L  N  E  K  E  L  T  P  P  G  F  F  E  D  S  E  G  S  V  Q  S  R  L  K  I  S  R  G  N  T  S  Q  Q  S  S  V  H  I  T  I  T  Q  V  T  P  R  *  S  S  L  V  T  A  *  S  C  T  *  I  I  L  P  A  T  L  F  C  S  L  R  *  R  L  L  E  I  F  *  E  L  S  L  Q  T  C  I  L  W  I  F  N  K  K  G  *  L  T  F  S  N  L  V  F  S  N  L  L  K  Y  F  *  N  L  H  R  K  V  *  T  F  L  Q  V  *  F  R  H  M  K  Q  N  *  V  C  K  F  K  I  F  *  K  I  S  N  K  R  H  L  S  S  Q  K  I  E  I  A  G  L  M  I  S  E  G  V  V  K  V  P  R  Q  N  S  S  N  L  C  V  L  F  L  Y  D  K  H  F  F  G  S  C  F  L  P  Y  Y  F  Y  S  D  R  Y  Y  I  K  P  I  T  L  Y  S  F  K  *  N  I  L  S  K  *  Y  F  I  K   </first_frame>
            <second_frame>  S  W  W  M  K  N  *  M  N  S  R  R  E  K  S  S  G  T  S  R  R  L  C  F  A  H  K  Q  M  Q  T  E  D  Q  *  *  A  R  L  L  R  C  F  Q  E  I  S  S  *  M  R  K  N  L  H  H  L  V  S  S  K  I  L  K  E  A  C  N  Q  D  *  R  Y  L  E  V  I  L  V  N  K  V  L  Y  T  S  Q  L  L  R  *  P  L  D  S  H  P  W  *  P  P  D  P  A  L  E  S  F  F  L  R  H  C  F  A  A  *  D  D  V  C  L  R  F  S  R  N  *  V  C  K  L  V  Y  Y  G  F  L  T  K  K  D  S  *  L  F  Q  I  *  F  F  Q  I  C  *  N  I  S  E  I  F  I  E  K  F  E  P  F  C  K  C  S  S  D  T  *  S  K  I  E  F  A  N  S  K  F  F  E  K  F  Q  T  N  A  I  *  V  H  R  R  L  K  L  Q  D  *  *  Y  R  K  A  L  S  K  F  L  D  K  I  P  A  I  Y  V  Y  Y  F  C  M  T  N  I  F  L  D  P  V  F  Y  L  I  I  F  I  L  T  G  I  I  L  N  R  *  H  Y  I  V  S  S  K  I  F  F  Q  N  N  I  L  S  R  </second_frame>
            <third_frame>   V  G  G  *  R  T  R  *  I  P  G  E  R  S  R  Q  V  H  Q  D  G  S  V  L  H  T  S  K  C  K  Q  K  T  N  D  E  P  G  Y  *  D  A  F  K  R  Y  P  A  K  *  E  R  T  Y  T  T  W  F  L  R  R  F  *  R  K  R  A  I  K  I  E  D  I  *  R  *  Y  *  S  T  K  F  C  T  H  H  N  Y  S  G  D  P  *  I  V  I  L  G  D  R  L  I  L  H  L  N  H  S  S  C  D  I  V  L  Q  L  K  M  T  F  A  *  D  F  L  G  I  E  F  A  N  L  Y  I  M  D  F  *  Q  K  R  I  A  N  F  F  K  S  S  F  F  K  F  V  E  I  F  L  K  S  S  *  K  S  L  N  L  S  A  S  V  V  Q  T  H  E  A  K  L  S  L  Q  I  Q  N  F  L  K  N  F  K  Q  T  P  S  K  F  T  E  D  *  N  C  R  I  N  D  I  G  R  R  C  Q  S  S  *  T  K  F  Q  Q  F  M  C  I  I  F  V  *  Q  T  F  F  W  I  L  F  F  T  L  L  F  L  F  *  Q  V  L  Y  *  T  D  N  I  I  *  F  Q  V  K  Y  S  F  K  I  I  F  Y  Q  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93181" stop="93465"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELVDEELDEFPEREVVRYIKTALFCTQANANRRPMMSQVIEMLSRDIQLNEKELTPPGFFEDSEGSVQSRLKISRGNTSQQSSVHITITQVTPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93745" stop="93960"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISNKRHLSSQKIEIAGLMISEGVVKVPRQNSSNLCVLFLYDKHFFGSCFLPYYFYSDRYYIKPITLYSFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="98410" PGL_stop="94551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98410" e_stop="97924"/>
            <exon e_start="95528" e_stop="95375"/>
            <exon e_start="95241" e_stop="94551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.554" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98410" e_stop="97924" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95528" e_stop="95375" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.554">
            <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95241" e_stop="94551" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98410" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCGCATATATAGGTGTACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG : GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG : CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTG</gDNA_template>
            <first_frame> V  R  I  Y  R  C  T  R  E  K  E  N  S  R  D  F  A  D  C  R  E  R  K  E  R  K  E  G  K  W  L  H  L  M  R  S  V  W  T  V  R  Y  R  H  R  R  H  Q  H  R  S  M  M  E  T  T  T  A  L  T  P  P  S  P  T  P  I  R  R  R  F  T  A  L  E  D  S  V  E  T  M  T  K  *  R  W  N  T  Y  L  I  P  S  I  V  P  I  P  T  D  T  G  Q  I  R  F  Q  T  K  P  V  H  L  E  L  L  Q  L  R  S  R  T  G  M  V  S  P  T  I  *  V  K  I  L  R  E  F  S  V  P  M  D  P  F  S  P  L  R  M  K  C  V  R  K  V  L  R  S  A  N  G  E   : G  K  M  L  S  V  L  R  R  R  R  R  E  K  R  K  S  E  A  K  L  L  R  K  V  K  N  I  R  K  H  S  M  R  K  E  I  S  V  L  R  P  T  R  Q  L  T  A  R  K  K  S :   C  T  *  L  V  K  R  S  S  I  K  K  L  I  S  N  I  G  K  P  *  Q  S  S  F  P  R  R  C  P  A  L  R  R  R  E  G  R  R  I  K  I  R  S  H  P  S  Q  S  S  K  G  L  N  L  G  N  L  P  I  F  Q  G  C  A  T  Y  C  *  S  L  S  T  P  H  H  L  T  *  Y  H  P  L  L  P  L  P  R  T  P  K  L  G  R  M  E  K  T  P  R  M  P  K  L  E  R  T  E  K  T  P  R  M  L  K  I  L  *  H  Q  M  G  L  Q  M  H  L  P  V  M  P  K  L  L  R  H  Q  K  N  L  L  L  Q  N  D  R  L  L  A  *  F  L  *  S  L  M  L  *  C  V  I  L  L  H  I  L  F  F  L  Y  E  F  C  I  I  Y  Y  I  L  C  H  S  T  T  I  L  L  V  R  D  R  H  *  L  H  F  V  A  L  D  V  *  V  C  L  L  Y  Y  L  G  P  F  L  T  G  G  E  F  I  I  F  L  F  T  E  T  L  Y  F  L </first_frame>
            <second_frame>  C  A  Y  I  G  V  L  E  R  R  K  I  R  E  I  L  Q  T  V  E  R  E  R  R  E  K  K  G  N  G  C  I  *  C  V  Q  Y  G  R  *  G  T  G  T  G  G  I  N  T  V  R  *  W  R  L  R  R  L  L  H  R  L  L  Q  R  R  Y  A  A  V  S  R  L  W  R  I  R  W  R  L  *  R  S  N  G  G  T  R  I  S  Y  R  R  *  S  R  S  L  R  I  R  V  R  F  V  S  K  P  N  R  F  I  W  S  F  C  S  S  D  L  E  R  E  W  *  A  L  R  S  R  *  R  Y  *  G  N  F  Q  F  R  W  T  R  S  P  P  S  E  *  N  A  *  G  R  F  C  A  P  R  M  A  K  :  A  K  C  Y  P  S  *  G  E  G  E  E  R  K  G  N  Q  K  P  N  Y  *  G  R  *  R  I  *  E  S  I  L  *  E  K  K  S  Q  Y  *  D  Q  Q  D  N  *  P  R  E  R  K   : A  V  L  D  *  S  R  E  V  P  *  R  S  *  *  A  I  L  E  S  H  S  R  A  H  S  Q  G  G  A  Q  H  *  E  E  G  K  E  E  G  S  R  *  E  A  I  H  H  S  R  P  R  A  *  T  W  E  T  Y  R  S  F  K  D  A  P  H  T  A  E  A  *  A  H  P  T  T  S  H  D  T  T  P  S  C  P  C  Q  G  R  Q  S  W  E  G  W  K  R  H  Q  G  C  Q  S  W  K  G  R  K  R  H  Q  E  C  *  R  Y  C  S  T  K  W  D  S  R  C  T  Y  Q  *  C  Q  S  Y  S  D  I  R  R  T  Y  C  C  R  M  I  G  F  *  P  N  F  F  S  L  *  C  C  N  V  L  S  S  Y  I  Y  S  F  F  S  M  N  F  V  S  F  T  I  F  C  V  I  L  L  L  F  Y  W  F  V  T  D  I  S  C  I  L  L  H  W  M  S  E  F  V  Y  C  T  I  *  V  L  S  *  L  E  V  N  S  L  F  S  C  L  Q  K  P  Y  I  S   </second_frame>
            <third_frame>   A  H  I  *  V  Y  *  R  E  G  K  F  E  R  F  C  R  L  *  R  E  K  G  E  K  R  R  E  M  A  A  F  D  A  F  S  M  D  G  E  V  P  A  P  A  A  S  T  P  F  D  D  G  D  Y  D  G  S  Y  T  A  F  S  N  A  D  T  P  P  F  H  G  S  G  G  F  G  G  D  Y  D  E  V  T  V  E  H  V  S  H  T  V  D  S  P  D  P  Y  G  Y  G  S  D  S  F  P  N  Q  T  G  S  F  G  A  S  A  A  P  I  S  N  G  N  G  K  P  Y  D  L  G  E  D  T  E  G  I  F  S  S  D  G  P  V  L  P  P  P  N  E  M  R  E  E  G  F  A  L  R  E  W  R  R :   Q  N  A  I  R  L  E  E  K  E  K  R  E  K  E  I  R  S  Q  I  I  E  E  G  E  E  Y  K  K  A  F  Y  E  K  R  N  L  S  I  E  T  N  K  T  T  N  R  E  K  E  K  :  L  Y  L  T  S  Q  E  K  F  H  K  E  A  D  K  Q  Y  W  K  A  I  A  E  L  I  P  K  E  V  P  S  I  E  K  K  G  R  K  K  D  Q  D  K  K  P  S  I  T  V  V  Q  G  P  K  P  G  K  P  T  D  L  S  R  M  R  H  I  L  L  K  L  K  H  T  P  P  P  H  M  I  P  P  P  P  A  P  A  K  D  A  K  V  G  K  D  G  K  D  T  K  D  A  K  A  G  K  D  G  K  D  T  K  N  A  K  D  T  V  A  P  N  G  T  P  D  A  P  T  S  D  A  K  V  T  Q  T  S  E  E  P  T  A  A  E  *  S  A  F  S  L  I  S  L  V  F  D  V  V  M  C  Y  P  L  T  Y  T  L  F  S  L  *  I  L  Y  H  L  L  Y  F  V  S  F  Y  Y  Y  S  I  G  S  *  Q  T  L  A  A  F  C  C  I  G  C  L  S  L  F  I  V  L  F  R  S  F  L  N  W  R  *  I  H  Y  F  L  V  Y  R  N  L  I  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98351" stop="97924"/>
                    <exon start="95528" stop="95375"/>
                    <exon start="95241" stop="94807"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKGEKRREMAAFDAFSMDGEVPAPAASTPFDDGDYDGSYTAFSNADTPPFHGSGGFGGDYDEVTVEHVSHTVDSPDPYGYGSDSFPNQTGSFGASAAPISNGNGKPYDLGEDTEGIFSSDGPVLPPPNEMREEGFALREWRRQNAIRLEEKEKREKEIRSQIIEEGEEYKKAFYEKRNLSIETNKTTNREKEKLYLTSQEKFHKEADKQYWKAIAELIPKEVPSIEKKGRKKDQDKKPSITVVQGPKPGKPTDLSRMRHILLKLKHTPPPHMIPPPPAPAKDAKVGKDGKDTKDAKAGKDGKDTKNAKDTVAPNGTPDAPTSDAKVTQTSEEPTAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="101062" PGL_stop="98464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101062" e_stop="101052"/>
            <exon e_start="100973" e_stop="100900"/>
            <exon e_start="100554" e_stop="99786"/>
            <exon e_start="98479" e_stop="98464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.682" e_score="0.948"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101062" e_stop="101052" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101051" i_stop="100974" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100973" e_stop="100900" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.792">
            <gDNA_intron_boundary i_start="100899" i_stop="100555" i_length="345"/>
          </intron>
          <exon e_serial="3" e_score="0.948">
            <gDNA_exon_boundary e_start="100554" e_stop="99786" e_length="769"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.682">
            <gDNA_intron_boundary i_start="99785" i_stop="98480" i_length="1306"/>
          </intron>
          <exon e_serial="4" e_score="0.750">
            <gDNA_exon_boundary e_start="98479" e_stop="98464" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101062" stop="101052"/>
              <exon start="100973" stop="100900"/>
              <exon start="100554" stop="99786"/>
              <exon start="98479" stop="98464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAACACAG : GCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAG : ATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGCATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTGTTTTTTTGTAGCCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA : GAACGAAAAAGAAAAA</gDNA_template>
            <first_frame> L  K  H  R :   L  L  K  G  L  L  L  L  *  S  L  S  W  L  N  F  L  T  S  A  R  V  L  Q   : D  H  C  S  S  R  D  F  L  I  K  D  *  N  L  N  I  L  G  V  C  S  R  E  Y  H  C  L  V  D  S  R  R  I  L  P  L  C  H  E  L  C  I  K  I  F  T  S  A  C  T  S  T  P  *  K  F  *  H  T  W  E  H  L  P  L  *  F  V  K  P  I  G  I  F  T  M  N  H  C  P  A  V  S  A  R  L  Y  P  V  C  T  L  T  I  E  A  S  V  W  I  D  R  S  E  L  N  H  L  S  G  A  R  *  F  K  F  V  N  C  G  C  L  A  I  F  H  V  I  L  G  D  L  *  K  A  S  *  S  L  E  *  V  R  I  F  I  Q  D  G  H  Q  K  P  H  T  F  G  E  L  V  L  P  A  L  N  T  P  W  P  C  P  M  R  F  P  E  Y  T  P  I  L  T  I  S  *  L  I  *  D  M  I  L  R  P  F  A  F  V  V  S  P  A  F  F  R  Y  Q  N  R  T  S  G  K  F  C  *  A  V  I  C  L  L  C  S  L  F  L  H  C  F  F  V  A  S  G  V  Q  F  N  V  Q  M  *  P  P  Q  L  I  N  G  I  F  S  F  Q  Q :   N  E  K  E  K </first_frame>
            <second_frame>  *  N  T   : G  C  *  K  G  S  C  C  S  E  V  *  A  G  S  I  F  S  Q  A  P  G  F  S  K  :  I  I  A  A  A  G  I  F  *  *  K  I  E  T  *  I  F  S  G  C  A  A  E  S  T  I  V  W  *  I  P  E  E  Y  F  R  Y  A  M  N  Y  V  *  R  S  S  P  L  L  V  H  Q  P  H  R  N  F  N  I  H  G  N  I  C  R  C  D  L  *  S  Q  L  G  S  L  L  *  I  T  V  L  L  F  Q  L  D  Y  I  Q  Y  V  R  S  Q  *  K  Q  V  S  G  S  I  D  Q  N  *  I  T  F  R  E  P  G  S  S  N  L  *  T  V  D  V  L  L  F  S  M  *  F  W  E  I  S  K  K  P  V  R  A  W  N  E  F  A  S  S  F  K  M  G  T  K  S  R  I  L  L  G  S  *  F  F  R  H  *  I  H  L  G  H  V  Q  C  V  F  R  S  T  L  Q  F  *  R  F  H  S  *  F  R  I  *  F  *  D  L  S  L  L  W  F  L  P  H  F  L  D  T  K  I  G  R  V  E  N  F  V  K  L  *  F  A  Y  C  V  V  Y  F  C  I  V  F  L  *  P  Q  G  Y  N  L  M  S  K  C  N  L  L  N  *  L  M  E  S  L  V  F  S   : R  T  K  K  K   </second_frame>
            <third_frame>   K  T  Q  :  A  A  E  R  A  L  V  A  L  K  S  E  L  A  Q  F  S  H  K  R  Q  G  S  P  R :   S  L  Q  Q  Q  G  F  S  N  K  R  L  K  P  E  Y  S  R  G  V  Q  Q  R  V  P  L  S  G  R  F  P  K  N  T  S  A  M  P  *  T  M  Y  K  D  L  H  L  C  L  Y  I  N  P  I  E  I  L  T  Y  M  G  T  S  A  A  V  I  C  E  A  N  W  D  L  Y  Y  E  S  L  S  C  C  F  S  S  T  I  S  S  M  Y  A  H  N  R  S  K  C  L  D  R  *  I  R  I  E  S  P  F  G  S  Q  V  V  Q  I  C  K  L  W  M  S  C  Y  F  P  C  D  F  G  R  S  L  K  S  Q  L  E  P  G  M  S  S  H  L  H  S  R  W  A  P  K  A  A  Y  F  W  G  V  S  S  S  G  I  E  Y  T  L  A  M  S  N  A  F  S  G  V  H  S  N  F  D  D  F  I  V  D  L  G  Y  D  F  E  T  F  R  F  C  G  F  S  R  I  F  *  I  P  K  *  D  E  W  K  I  L  L  S  C  N  L  L  T  V  *  S  I  F  A  L  F  F  C  S  L  R  G  T  I  *  C  P  N  V  T  S  S  I  D  *  W  N  L  *  F  S  A  :  E  R  K  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100247" stop="99939"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRIESPFGSQVVQICKLWMSCYFPCDFGRSLKSQLEPGMSSHLHSRWAPKAAYFWGVSSSGIEYTLAMSNAFSGVHSNFDDFIVDLGYDFETFRFCGFSRIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101060" stop="101052"/>
                    <exon start="100973" stop="100900"/>
                    <exon start="100554" stop="100437"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTQAAERALVALKSELAQFSHKRQGSPRSLQQQGFSNKRLKPEYSRGVQQRVPLSGRFPKNTSAMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="107905" PGL_stop="107038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107905" e_stop="107713"/>
            <exon e_start="107450" e_stop="107240"/>
            <exon e_start="107157" e_stop="107038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107905" e_stop="107713" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.823">
            <gDNA_intron_boundary i_start="107712" i_stop="107451" i_length="262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107450" e_stop="107240" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="107239" i_stop="107158" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107157" e_stop="107038" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107905" stop="107713"/>
              <exon start="107450" stop="107240"/>
              <exon start="107157" stop="107038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATG : ATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTG : GCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGATAAGGATCAACCTCGAGTGCACGTTG</gDNA_template>
            <first_frame> G  Q  A  L  P  G  G  *  N  Y  F  K  A  I  C  R  K  *  S  G  C  *  Q  W  K  G  D  Q  I  S  V  *  G  F  P  R  I  V  *  *  S  P  T  Y  C  Q  T  P  D  *  V  A  R  *  K  H  Y  S  Y  S  Y  *  S  N   : D  P  *  Y  *  C  S  C  E  I  E  T  C  L  G  G  S  P  Q  L  S  D  C  K  G  S  E  A  L  *  S  L  C  V  H  N  G  *  K  R  L  C  F  R  N  V  A  P  S  *  S  R  F  K  L  D  *  L  T  R  T  L  G  S  Y  C  L  C  Q  V  W :   L  E  E  I  F  V  Q  C  I  P  R  W  K  L  S  S  *  D  G  I  G  D  *  *  S  L  E  S  V  G  *  *  G  S  T  S  S  A  R   </first_frame>
            <second_frame>  V  K  R  Y  Q  E  D  K  I  I  L  K  Q  Y  A  E  N  D  Q  V  V  D  N  G  K  V  I  R  S  Q  S  E  V  F  P  A  L  S  D  N  H  Q  P  I  V  R  P  L  I  R  L  Q  D  R  N  I  I  L  T  R  I  N  P  M  :  I  R  D  T  S  V  L  V  R  L  R  P  A  W  E  D  L  R  S  Y  L  T  A  R  G  R  K  R  F  E  V  Y  V  C  T  M  A  E  R  D  Y  A  L  E  M  W  R  L  L  D  P  D  S  N  L  I  N  S  Q  E  L  L  D  R  I  V  C  V  K  S   : G  L  R  K  S  L  F  N  V  F  Q  D  G  N  C  H  P  K  M  A  L  V  I  D  D  R  L  K  V  W  D  D  K  D  Q  P  R  V  H  V  </second_frame>
            <third_frame>   S  S  V  T  R  R  I  K  L  F  *  S  N  M  P  K  M  I  R  L  L  T  M  E  R  *  S  D  L  S  L  R  F  S  P  H  C  L  I  I  T  N  L  L  S  D  P  *  L  G  C  K  I  E  T  L  F  L  L  V  L  I  Q  * :   S  V  I  L  V  F  L  *  D  *  D  L  L  G  R  I  S  A  A  I  *  L  Q  G  V  G  S  A  L  K  F  M  C  A  Q  W  L  K  E  I  M  L  *  K  C  G  A  F  L  I  Q  I  Q  T  *  L  T  H  K  N  S  W  I  V  L  S  V  S  S  L  :  A  *  G  N  L  C  S  M  Y  S  K  M  E  I  V  I  L  R  W  H  W  *  L  M  I  A  *  K  C  G  M  I  R  I  N  L  E  C  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107904" stop="107713"/>
                    <exon start="107450" stop="107240"/>
                    <exon start="107157" stop="107039"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRYQEDKIILKQYAENDQVVDNGKVIRSQSEVFPALSDNHQPIVRPLIRLQDRNIILTRINPMIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPDSNLINSQELLDRIVCVKSGLRKSLFNVFQDGNCHPKMALVIDDRLKVWDDKDQPRVHV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="110383" PGL_stop="109952"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110383" e_stop="109952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="110383" e_stop="109952" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110383" stop="109952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTAATAAGAGATAGAGAGAGAAGGAGATAAGAGAGAGAAAGTACAAAATTGACCTTTCACTCTGTGTGGATCTAGGGTTTCACAAAACACAGTTGAGCCACCGCATCGTCATCTACACCGCCGTACAACAACTACTATCTGAAAAATCATCTAAACCCTACTTTTAATCTTCTCTTAATCATCATCTTCTATAAAGAAACCCTAAAACTTTCATTTTTTTGGGTATTTTTTTGGGTAAATCTGAATGAAATTTGATAAACGATGACGTTTTATTGGTAGATTTGATAAGATCTGACTTTTTTTTTCCTGTTTCGATTGGATTTTAAGCATAATTTCTAGATCGATCTATATTGACGATGAGAAACTGAAAGGGAAAGGATAGAAATTGGTTTTAATTTTTGAATTTTTTGTGATTACAGAGAAACAACGC</gDNA_template>
            <first_frame> V  *  *  E  I  E  R  E  G  D  K  R  E  K  V  Q  N  *  P  F  T  L  C  G  S  R  V  S  Q  N  T  V  E  P  P  H  R  H  L  H  R  R  T  T  T  T  I  *  K  I  I  *  T  L  L  L  I  F  S  *  S  S  S  S  I  K  K  P  *  N  F  H  F  F  G  Y  F  F  G  *  I  *  M  K  F  D  K  R  *  R  F  I  G  R  F  D  K  I  *  L  F  F  S  C  F  D  W  I  L  S  I  I  S  R  S  I  Y  I  D  D  E  K  L  K  G  K  G  *  K  L  V  L  I  F  E  F  F  V  I  T  E  K  Q  R </first_frame>
            <second_frame>  C  N  K  R  *  R  E  K  E  I  R  E  R  K  Y  K  I  D  L  S  L  C  V  D  L  G  F  H  K  T  Q  L  S  H  R  I  V  I  Y  T  A  V  Q  Q  L  L  S  E  K  S  S  K  P  Y  F  *  S  S  L  N  H  H  L  L  *  R  N  P  K  T  F  I  F  L  G  I  F  L  G  K  S  E  *  N  L  I  N  D  D  V  L  L  V  D  L  I  R  S  D  F  F  F  P  V  S  I  G  F  *  A  *  F  L  D  R  S  I  L  T  M  R  N  *  K  G  K  D  R  N  W  F  *  F  L  N  F  L  *  L  Q  R  N  N   </second_frame>
            <third_frame>   V  I  R  D  R  E  R  R  R  *  E  R  E  S  T  K  L  T  F  H  S  V  W  I  *  G  F  T  K  H  S  *  A  T  A  S  S  S  T  P  P  Y  N  N  Y  Y  L  K  N  H  L  N  P  T  F  N  L  L  L  I  I  I  F  Y  K  E  T  L  K  L  S  F  F  W  V  F  F  W  V  N  L  N  E  I  *  *  T  M  T  F  Y  W  *  I  *  *  D  L  T  F  F  F  L  F  R  L  D  F  K  H  N  F  *  I  D  L  Y  *  R  *  E  T  E  R  E  R  I  E  I  G  F  N  F  *  I  F  C  D  Y  R  E  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 91 chains have been computed
$ 
$ memory statistics:
$ 192152 bytes spliced alignments in total
$ 27 spliced alignments have been stored
$ 7116 bytes was the average size of a spliced alignment
$ 28360 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1575 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 119 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:21:36
-->
