<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:57:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207943" ref_strand="+" ref_description="SGN-E207943 [cLEC-34-H21]">
      <seq>ttcatcccactgaagaagggtaattctgatgaaattggaagggtaaaaaagtcaaatgatttaagtgataagaaaaattggatgagctctgctcagctatggagcactccagttcagtatgaaagctttaatcttcaaaacttaaaacggagtggtgtagaagataaagccaaggagaagcaataccagttaggagcatgtaaattgacgagtgaaagaggggcatttttgccatttcaaagacaagctttgaaggtagacaaaaaatgtttggcagtgaaggatttatctctgtcaatggcagtgacagtgggtgaaggagaaaaccgtgaaaatccaattgatgtgagtgtcaaaagagagaacggcccatcaaattcaaatgggtgtgatggtttttcacatgacaaatcactacagaggaaacagaggcgttgttggtctccagaattgcatcgcagatttgttgatgctcttcatcaacttggaggtccacaagtggctacaccaaaacagatcagagatatcatgcaagtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="8723" stop="6935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8423" g_stop="8274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8273" i_stop="8193" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8192" g_stop="7844" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="499" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7843" i_stop="7276" i_length="568">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7275" g_stop="7235" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="540" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E207943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8423" e_stop="8274"/>
          <exon e_start="8192" e_stop="7844"/>
          <exon e_start="7275" e_stop="7235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGGGTAAGTTTTTCCCCCTTTTTTTTTTTTTTTTTTTTTGTAAAATCGTTTTGACATTTTTTTATACCATTGTTGATTAATCAGAGTGGTGTAGAAGATAAAGCCAAGGAGAAGCAATACCAGTTAGGAGCATGTAAATTGACGAGTGAAAGAGGGGCATTTTTGCCATTTCAAAGACAAGCTTTGAAGGTAGACAAAAAATGTTTGGCAGTGAAGGATTTATCTCTGTCAATGGCAGTGACAGTGGGTGAAGGAGAAAACCGTGAAAATCCAATTGATGTGAGTGTCAAAAGAGAGAACGGCCCATCAAATTCAAATGGGTGTGATGGTTTTTCACATGACAAATCACTACAGAGGAAACAGAGGCGTTGTTGGTCTCCAGAATTGCATCGCAGATTTGTTGATGCTCTTCATCAACTTGGAGGTCCACAAGGTAATTGTCGGTGTTCGCATTAATTTGCGTTCACCTTTGATTATTTTGTGAAAAATGAATAGTTAATCTTGTTGAATTGCTGAAAGTATTTGATTAAAATATAATATTACTATTGTTGGAGTCTCACATCATTCATTTAGAAATGCAAATGTCGTCTATTCTTTATCATGAAAATCAGATCCGTACCAATTCATTGTTTTCTAGCCATGTGAGGATCGGGTTGGAGTAGAATGTATTGTTTAATAAAAGGAATTTGTATATGATCTTGAGCAGGACGAGCTAGCTTTTGGATCGATTAGTTCTAGTATTAATTTCTTTTTATCATTTAATTCTGATCATAAGAGAAAAAAAATAGACTCGCAATTACAAAAGTCTTTCTTTTTTACTAGTAATAGTCGCCGCAACTATGGTTAAAATATTGTTATCAATTTTTAACATCACCAACATGCTATTATTTCATTATCATTTTTTTTTCTTTTGTACTAGGATTTTATTATATATGTCACTCTATATACTTTTTATTATCCAACAAAACATTAACAATAATTTTTGAAATGTTATCCTGCAGTGGCTACACCAAAACAGATCAGAGATATCATGCAAGTGGAT</genome_strand>
        <mrna_strand>TTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGG.................................................................................AGTGGTGTAGAAGATAAAGCCAAGGAGAAGCAATACCAGTTAGGAGCATGTAAATTGACGAGTGAAAGAGGGGCATTTTTGCCATTTCAAAGACAAGCTTTGAAGGTAGACAAAAAATGTTTGGCAGTGAAGGATTTATCTCTGTCAATGGCAGTGACAGTGGGTGAAGGAGAAAACCGTGAAAATCCAATTGATGTGAGTGTCAAAAGAGAGAACGGCCCATCAAATTCAAATGGGTGTGATGGTTTTTCACATGACAAATCACTACAGAGGAAACAGAGGCGTTGTTGGTCTCCAGAATTGCATCGCAGATTTGTTGATGCTCTTCATCAACTTGGAGGTCCACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACACCAAAACAGATCAGAGATATCATGCAAGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231592" ref_strand="+" ref_description="SGN-E231592 [cLED-4-N14]">
      <seq>aacaattaaatatatttttttttataaaaaaaattatgggttcaaattctaaagaaatgaacattgatttgaattttgtttatgtacccaagttaatttcagatgttttaactgaagtttctgccatggatgacatctccaagaaattaaaaaagctcaatcagtttcttgttcctttagaagaagaactcacaaaaatcgaagcttttaaacgtgaattgcccttgtgtatgcttcttctcaaacatgctattgagagattaaaggcagaagctttgctgtataaggagaaagataaaagccctgtgatgatggaggaattcattccactgaagaagggtaattctgatgaaattggaagggtaaaaaagtcaaatgatttaagtgataagaaaaattggatgagctctgctcagctatggagcactccagttcagtatgaaagctttaatcttcaaaacttaaaacggagtggtgtagaagataaagccaaggagaagcaataccagttaagagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="9141" stop="7843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8841" g_stop="8593" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8494" g_stop="8274" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="470" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8273" i_stop="8193" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8192" g_stop="8143" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="520" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E231592" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8841" e_stop="8593"/>
          <exon e_start="8494" e_stop="8274"/>
          <exon e_start="8192" e_stop="8143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATGGTTAGTTTTTTTTTTTGAATTTTTTTCTCTATTTTTTCAATTTTCTACATTTTTTTAGGGGTTATTTATTTACTTTTTGTTTTTAATTCTTGTGGCAGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGGGTAAGTTTTTCCCCCTTTTTTTTTTTTTTTTTTTTTGTAAAATCGTTTTGACATTTTTTTATACCATTGTTGATTAATCAGAGTGGTGTAGAAGATAAAGCCAAGGAGAAGCAATACCAGTTAGGAGCATG</genome_strand>
        <mrna_strand>AACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATG..................................................................................................CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATTCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGG.................................................................................AGTGGTGTAGAAGATAAAGCCAAGGAGAAGCAATACCAGTTAAGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235717" ref_strand="+" ref_description="SGN-E235717 [cLED-15-D24]">
      <seq>gatacaacaattaaatatatttttttttataaaaaaaattatgggttcaaattctaaagaaatgaacattgatttgaattttgtttatgtacccaagttaatttcagatgttttaactgaagtttctgccatggatgacatctccaagaaattaaaaaagctcaatcagtttcttgttcctttagaataagaactcacaaaaatcgaagcttttaaacgtgaattgcccttgtgtatgcttcttctcaaacatgctattgagagattaaaggcagaagctttgctgtataaggagaaagataaaagccctgtgatgatggaggaattcatcccactgaagaagggtaattctgatgaaattggaagggtaaaaaagtcaaatgatttaagtgataagaaaaattggatgagctctgctcagctatggagcactccagttcagtatgaaagctttaatcttcaaaacttaaaacggagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="9146" stop="7972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8846" g_stop="8593" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8494" g_stop="8274" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="475" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8273" i_stop="8193" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8192" g_stop="8188" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="480" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E235717" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8846" e_stop="8593"/>
          <exon e_start="8494" e_stop="8274"/>
          <exon e_start="8192" e_stop="8188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATGGTTAGTTTTTTTTTTTGAATTTTTTTCTCTATTTTTTCAATTTTCTACATTTTTTTAGGGGTTATTTATTTACTTTTTGTTTTTAATTCTTGTGGCAGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGGGTAAGTTTTTCCCCCTTTTTTTTTTTTTTTTTTTTTGTAAAATCGTTTTGACATTTTTTTATACCATTGTTGATTAATCAGAGTGG</genome_strand>
        <mrna_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAATAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATG..................................................................................................CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGG.................................................................................AGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235789" ref_strand="+" ref_description="SGN-E235789 [cLED-15-C24]">
      <seq>gatacaacaattaaatatatttttttttataaaaaaaattatgggttcaaattctaaagaaatgaacattgatttgaattttgtttatgtacccaagttaatttcagatgttttaactgaagtttctgccatggatgacatctccaagaaattaaaaaagctcaatcagtttcttgttcctttagaagaagaactcacaaaaatcgaagcttttaaacgtgaattgcccttgtgtatgcttcttctcaaacatgctattgagagattaaaggcagaagctttgctgtataaggagaaagatcaaagccctgtgatgatggaggaattcatcccactgaagaagggtaattctgatgaaattggaagggtaaaaaagtcaaatgatttaagtgataagaaaaattggatgagctctgctcagctatggagcactccagttcagtatgaaagctttaatcttcaaaacttaaaacggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="9146" stop="7972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8846" g_stop="8593" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8494" g_stop="8274" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="475" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E235789" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8846" e_stop="8593"/>
          <exon e_start="8494" e_stop="8274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATGGTTAGTTTTTTTTTTTGAATTTTTTTCTCTATTTTTTCAATTTTCTACATTTTTTTAGGGGTTATTTATTTACTTTTTGTTTTTAATTCTTGTGGCAGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGG</genome_strand>
        <mrna_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATG..................................................................................................CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATCAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476058" ref_strand="+" ref_description="SGN-E476058 [cSTB-43-M23]">
      <seq>gagaaagtaatagaacaattaaatatatttgcagaaaaaaagttaaaattatgggttcaaattctaaagaaatgaacattgatttgaattttgtttatgtgcccaagttaatttcagatgttttaactgaagtttctgccatggatgacatctccaagaaattaacaaagctcaatcagtttcttgttcctttagaagaagaactcagaaaaaccgaagcttttaaacgtgaattgcccatgtgtatgcttcttctcaaagatgctattgagagattaaaggcagaagctttgctgtataaggagaaagataaaagtcctgtgatggaggaattcatcccactgaagaagggtaattctgatgaaagtggaagggtaaaaaagtcaaatgatttaagtgataagaaaaactggatgagctctgctcagctatggagcactccagttcagtacgaaagcttaaaatcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="9154" stop="7991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8854" g_stop="8593" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8494" g_stop="8284" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="471" r_length="207" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E476058" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8854" e_stop="8593"/>
          <exon e_start="8494" e_stop="8284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGTGATACAACAATTAAATATATTTTTTTTTATAAA--AAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATGGTTAGTTTTTTTTTTTGAATTTTTTTCTCTATTTTTTCAATTTTCTACATTTTTTTAGGGGTTATTTATTTACTTTTTGTTTTTAATTCTTGTGGCAGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAA</genome_strand>
        <mrna_strand>GAGAAAGTAATAGAACAATTAAATATATTTGCAGAAAAAAAGTTAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTGCCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAACAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCAGAAAAACCGAAGCTTTTAAACGTGAATTGCCCATGTGTATGCTTCTTCTCAAAGATG..................................................................................................CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGTCC--TG-TGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAAGTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAACTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTACGAAAGC-TTAAAATCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240086" ref_strand="+" ref_description="SGN-E240086 [cLED-32-A22]">
      <seq>gatacaacaattaaatatatttttttttataaaaaaaattatgggttcaaattctaaagaaatgaacattgatttgaattttgtttatgtacccaagttaatttcagatgttttaactgaagtttctgccatggatgacatctccaagaaattaaaaaagctcaatcagtttcttgttcctttagaagaagaactcacaaaaatcgaagcttttaaacgtgaattgcccttgtgtatgcttcttctcaaacatgctattgagagattaaaggcagaagctttgctgtataaggagaaagataaaagccctgtgatgatggaggaattcatcccactgaagaagggtaattctgatgaaattggaagggtaaaaaagtcaaatgatttaagtgataagaaaaattggatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="9146" stop="8037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8846" g_stop="8593" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8494" g_stop="8337" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="412" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E240086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8846" e_stop="8593"/>
          <exon e_start="8494" e_stop="8337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATGGTTAGTTTTTTTTTTTGAATTTTTTTCTCTATTTTTTCAATTTTCTACATTTTTTTAGGGGTTATTTATTTACTTTTTGTTTTTAATTCTTGTGGCAGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGC</genome_strand>
        <mrna_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATG..................................................................................................CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231354" ref_strand="+" ref_description="SGN-E231354 [cLED-10-C24]">
      <seq>gtatttttttttataaaaaaaattatgggtacaaattctaaagaaatgaacattgatttgaattttgtttatgtacccaagttaatttcacatgttttaactgaagtttctgccatggatgacatattcaagaaattaaaatagctcaatcaggttcttgttcctttagaataagaactcacataaatctaatcttttaaacgtgaattgcccttgagtatgcttcttctcaaacatgctattgagagattaaaggcagaagctttgctgtataaggagaaagataaaagccctgtgatgatggaggaattcatcccactgaagaaaggtaattctgatgaaattggaagggtaaaaaagtcaaatgatttaagtgataagaaaaattggatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="9129" stop="8037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8830" g_stop="8593" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8494" g_stop="8337" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="396" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E231354" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8830" e_stop="8593"/>
          <exon e_start="8494" e_stop="8337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATGGTTAGTTTTTTTTTTTGAATTTTTTTCTCTATTTTTTCAATTTTCTACATTTTTTTAGGGGTTATTTATTTACTTTTTGTTTTTAATTCTTGTGGCAGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGC</genome_strand>
        <mrna_strand>GTATTTTTTTTTATAAAAAAAATTATGGGTACAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCACATGTTTTAACTGAAGTTTCTGCCATGGATGACATATTCAAGAAATTAAAATAGCTCAATCAGGTTCTTGTTCCTTTAGAATAAGAACTCACATAAATCTAATCTTTTAAACGTGAATTGCCCTTGAGTATGCTTCTTCTCAAACATG..................................................................................................CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAAGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231684" ref_strand="+" ref_description="SGN-E231684 [cLED-4-M10]">
      <seq>gatacaacaattaaatatatttttttttataaaaaaaattatgggttcaaattctaaagaaatgaacattgatttgaattttgtttatgtacccaagttaatttcagatgttttaactgaagtttctgccatggatgacatctccaagaaattaaaaaagctcaatcagtttcttgttcctttagaagaagaactcacaaaaatcgaagcttttaaacgtgaattgcccttgtgtatgcttcttctcaaacatgctattgagagattaaaggcagaagctttgctgtataaggagaaagataaaagccctgtgatgatggaggaattcatcccactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="9146" stop="8111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8846" g_stop="8593" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8494" g_stop="8411" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="338" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E231684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8846" e_stop="8593"/>
          <exon e_start="8494" e_stop="8411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATGGTTAGTTTTTTTTTTTGAATTTTTTTCTCTATTTTTTCAATTTTCTACATTTTTTTAGGGGTTATTTATTTACTTTTTGTTTTTAATTCTTGTGGCAGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGA</genome_strand>
        <mrna_strand>GATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATG..................................................................................................CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325508" ref_strand="+" ref_description="SGN-E325508 [cTOC-1-P24]">
      <seq>agagagaattatattattaataattaaataaacagaagatattttcattactttgccgaccatacataaaatatctttccccaaaaacttcattaccggaaaaaaggtcaaaaagtacgaaaaaacccaccgcctttatgctccatttcttcacatataccttcttatctgaggctaaaattgacttatcactactcggttctttgtgttggttggtcaaccggtagtattcagctccgatcaccagttccggtaactggtaaccattggtgagaaagctttgggatgtaaatcgagcttagtttgagctgaatctgaggtagcagacgaaatggatcgaggtccgggaccgtgtatggatatgccgatcatgcacgatagtgaccggtacgattttgttagagatatcgggtcgggtaactatggcgttgcgaggttgatgacagataagcagactaaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25054" stop="26117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25354" g_stop="25817" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E325508" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25354" e_stop="25817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAAGAGATTATTAATAATTAAATAAACAGAAGATATTTTCATTACTTTGCCGACCATACATAAAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGC</genome_strand>
        <mrna_strand>AGAGAGAATTATATTATTAATAATTAAATAAACAGAAGATATTTTCATTACTTTGCCGACCATACATAAAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATGCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTATGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415926" ref_strand="+" ref_description="SGN-E415926 [STM-22-O7]">
      <seq>aaaatatctttccccaaaaacttcattaccggaaaaaggtcaaaaagtacgaaaaaaccaccgcctttctccatcatttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtttgctattgactacccctttagatcctagataggtggttatacatgtatgactggttttttgcttgaaattttactctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25121" stop="28046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25421" g_stop="25852" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27765" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="588" r_length="157" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E415926" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25421" e_stop="25852"/>
          <exon e_start="27612" e_stop="27765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGG---TTTGCTTAAAATTTCACGCTAG</genome_strand>
        <mrna_strand>AAAATATCTTTCCCCAAAAACTTCATTACCGG-AAAAAGGTCAAAAAGTACGAAAAAA-CCACCGCCTTTCTCCATCATTTCTTCACATATACC-TCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCTATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACATGTATGACTGGTTTTTTGCTTGAAATTTTACTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437964" ref_strand="+" ref_description="SGN-E437964 [cSTA-5-N9]">
      <seq>aaaatatctttccccaaaaacttcattaccggaaaaaggtcaaaaagtacgaaaaaaccaccgcctttctccatcatttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25121" stop="27947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25421" g_stop="25852" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27647" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="467" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E437964" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25421" e_stop="25852"/>
          <exon e_start="27612" e_stop="27647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCAC</genome_strand>
        <mrna_strand>AAAATATCTTTCCCCAAAAACTTCATTACCGG-AAAAAGGTCAAAAAGTACGAAAAAA-CCACCGCCTTTCTCCATCATTTCTTCACATATACC-TCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369499" ref_strand="+" ref_description="SGN-E369499 [TUS-23-K1]">
      <seq>aaatatctttccccaaaaacttcattaccggaaaaaaggtcaaaaagtacgaaaaaacccaccgcctttatcctccatttcttcacatataccttcttatctgaggctaaaattgacttatcactactcggttctttgtgttggttggtcaaccggtagtattcagctccgatcaccagttccggtaactggtaaccattggtgagaaagctttgggatgtaaatcgagcttagtttgagctgaatctgaggtagcagacgaaatggatcgaggtccgggaccgtgtatggatatgccgatcatgcacgatagtgaccggtacgattttgttagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtacatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtcgctgaggcatcctaacataattaggttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatctctaatgcggngcgcttcaatgaggatgaggctcgcttcttcttccagcaacttatatctggtgtcagctactgtcactccatgcaagtatgtcatcggggacttgaagctggaaaatacgttgcttgatgaaagccctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25122" stop="28454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25422" g_stop="25852" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="506" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27867" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="608" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27950" g_stop="28003" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="662" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28097" g_stop="28154" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="721" r_length="59" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E369499" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25422" e_stop="25852"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27867"/>
          <exon e_start="27950" e_stop="28003"/>
          <exon e_start="28097" e_stop="28154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAGGTATTTAATCTGCTAATATTATAGAACACTGCAGTTACAGCTGTGCGAGATTTATGAGGTTACATAATCTCTTCCTGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATC-GGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTC</genome_strand>
        <mrna_strand>AAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGNGCGCTTCAATGAGGATGAG..................................................................................GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGGACTTGAAGCTGGAAAATACGTTGCTTGATGAAAGCCCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407518" ref_strand="+" ref_description="SGN-E407518 [PPI-7-H13]">
      <seq>aatatctttccccaaaaacttcattaccggaaaaaggtcaaaaagtacgaaaaaaccaccgcctttctccatcatttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtttgctattgactacccctttagatcctagataggtggttatacatgtatgactggtttttgcttgaaattttactctaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatttctaatgcanggcgcttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25123" stop="28159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25423" g_stop="25852" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27859" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="679" r_length="250" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E407518" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25423" e_stop="25852"/>
          <exon e_start="27612" e_stop="27859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGG--TTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATG</genome_strand>
        <mrna_strand>AATATCTTTCCCCAAAAACTTCATTACCGG-AAAAAGGTCAAAAAGTACGAAAAAA-CCACCGCCTTTCTCCATCATTTCTTCACATATACC-TCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCTATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACATGTATGACTGGTTTTTGCTTGAAATTTTACTCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATTTCTAATGCANGGCGCTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401742" ref_strand="+" ref_description="SGN-E401742 [PPC-5-M9]">
      <seq>aatatctttccccaaaaacttcattaccggaaaaaggtcaaaaagtacgaaaaaaccaccgcctttctccatcatttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatttctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25123" stop="28143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25423" g_stop="25852" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="504" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27843" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="582" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E401742" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25423" e_stop="25852"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAAT</genome_strand>
        <mrna_strand>AATATCTTTCCCCAAAAACTTCATTACCGG-AAAAAGGTCAAAAAGTACGAAAAAA-CCACCGCCTTTCTCCATCATTTCTTCACATATACC-TCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATTTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406562" ref_strand="+" ref_description="SGN-E406562 [PPI-4-O17]">
      <seq>tatctttccccaaaaaccttcattaccggaaaaaggtcaaaaagtacaaaaaaaccaccgcctttctccatcatttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatttctaatgcanggcgcttcaatgaggatgaggctcgcttcttcttccagcaacttatatctggtgttagctactgtcactccatgcaagtatgtcatcgggacttgaagcttgnaaatacattgcttgatggaagccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25125" stop="28451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25425" g_stop="25852" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="503" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27867" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="605" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82">
            <donor d_prob="0.933" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27950" g_stop="28003" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="659" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.283" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28097" g_stop="28151" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="714" r_length="55" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E406562" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25425" e_stop="25852"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27867"/>
          <exon e_start="27950" e_stop="28003"/>
          <exon e_start="28097" e_stop="28151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTCCCCAAAAAC-TTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAGGTATTTAATCTGCTAATATTATAGAACACTGCAGTTACAGCTGTGCGAGATTTATGAGGTTACATAATCTCTTCCTGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTG</genome_strand>
        <mrna_strand>TATCTTTCCCCAAAAACCTTCATTACCGG-AAAAAGGTCAAAAAGTAC-AAAAAAACCACCGCCTTTCTCCATCATTTCTTCACATATACCT-CTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATTTCTAATGCANGGCGCTTCAATGAGGATGAG..................................................................................GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTTAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTTGNAAATACATTGCTTGATGGAAGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409536" ref_strand="+" ref_description="SGN-E409536 [PPI-14-I6]">
      <seq>tatctttccccaaaaacttcattaccggaaaaaggtcaaaaagtacgaaaaaaccaccgcctttctccatcatttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaagcatcctaacataattangttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25125" stop="28114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25425" g_stop="25852" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="502" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27814" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="551" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E409536" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25425" e_stop="25852"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTG</genome_strand>
        <mrna_strand>TATCTTTCCCCAAAAACTTCATTACCGG-AAAAAGGTCAAAAAGTACGAAAAAA-CCACCGCCTTTCTCCATCATTTCTTCACATATACC-TCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAAGCATCCTAACATAATTANGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417134" ref_strand="+" ref_description="SGN-E417134 [STM-24-F4]">
      <seq>ctttccccaaaaacttcattaccggaaaaaggtcaaaaagtacgaaaaaaccaccgcctttctccatcatttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtttgctattgactacccctttagatcctagataggtggttatacatgtatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25128" stop="28042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25428" g_stop="25852" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27742" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="555" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E417134" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25428" e_stop="25852"/>
          <exon e_start="27612" e_stop="27742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTG</genome_strand>
        <mrna_strand>CTTTCCCCAAAAACTTCATTACCGG-AAAAAGGTCAAAAAGTACGAAAAAA-CCACCGCCTTTCTCCATCATTTCTTCACATATACC-TCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCTATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACATGTATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440561" ref_strand="+" ref_description="SGN-E440561 [cSTA-17-M8]">
      <seq>ctttccccataaacttcattaccggaaaaaggtcaaaaagggcgaaagaaccaccgcctttctccatcacttcttcacatatacctcttatctgaggctaaaattgacttatcacttctcggtgtgttggttggtcaaccgataatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatttaaatcgagcttcgagcttagtttgagttgaatctgaggtagcaaacgaaatggatcgaggtcccggaccgtgtatggatatgccgatcatgcacgatagtgacaggtacgattttgtcagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtttgctattgactaccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25128" stop="28008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25428" g_stop="25852" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27708" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="521" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E440561" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25428" e_stop="25852"/>
          <exon e_start="27612" e_stop="27708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGT-AA---A---TCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTT</genome_strand>
        <mrna_strand>CTTTCCCCATAAACTTCATTACCGG-AAAAAGGTCAAAAAGGGCGAAAGAA-CCACCGCCTTTCTCCATCACTTCTTCACATATACC-TCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGG-----TGTGTTGGTTGGTCAACCGATAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATTTAAATCGAGCTTCGAGCTTAGTTTGAGTTGAATCTGAGGTAGCAAACGAAATGGATCGAGGTCCCGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACAGGTACGATTTTGTCAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCTATTGACTACCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465471" ref_strand="+" ref_description="SGN-E465471 [cPRO-21-O21]">
      <seq>ttaaaaagtacgaaaaaaccaccgcctttctcctccattccttcacatataccttcttatctgaggctaaaattgacttatcacttctcggttctctgtgttggttggtcaacccgtaatcttcagctccgatcaccagttccggtaactggtagccatttgtgagaaagctctgggatgtgaatcgagcttagtttgagttgaatccgaggtagcaaacgaaatggatcgaggtccgggaccgtgtatggatatgccgatcatgcacgatagtgaccggtacgattttgtcagagatatcgggtcaggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtatatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatttctaatgcagggcgcttcaatgaggatgaggctcgcttcttcttccagcaacttatatctggtgtcagctactgtcactccatgcaagtatgtcatcgggacttgaagctggaaatacattgcttgatggaagccctgctcctcggctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25160" stop="28465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25461" g_stop="25852" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="466" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27867" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="568" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27950" g_stop="28003" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="622" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28097" g_stop="28165" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="690" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E465471" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25461" e_stop="25852"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27867"/>
          <exon e_start="27950" e_stop="28003"/>
          <exon e_start="28097" e_stop="28165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAGGTATTTAATCTGCTAATATTATAGAACACTGCAGTTACAGCTGTGCGAGATTTATGAGGTTACATAATCTCTTCCTGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAA</genome_strand>
        <mrna_strand>TTAAAAAGTACGAAAAAA-CCACCGCCTTTCTCCTCCATTCCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTTCTCGGTTCTCTGTGTTGGTTGGTCAACCCGTAATCTTCAGCTCCGATCACCAGTTCCGGTAACTGGTAGCCATTTGTGAGAAAGCTCTGGGATGTGAATCGAGCTTAGTTTGAGTTGAATCCGAGGTAGCAAACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTCAGAGATATCGGGTCAGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTATATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATTTCTAATGCAGGGCGCTTCAATGAGGATGAG..................................................................................GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTGG-AAATACATTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278037" ref_strand="+" ref_description="SGN-E278037 [cLER-4-A9]">
      <seq>aattgacttatcactactcggttctttgtgttggttggtcaaccggtagtattcagctccgatcaccagctccggtaactggtgaccattggtgagaaagctttgggatgttaatcgagcttagtttgagctgaatctgacgtagcagactaaatggatcgaggtccgggaccgtgtatggatatgccgatcatgcactatagtgaccgatacgattttgttagagatatcgggtcgcgttactgtggcgttgcgaggttgatgacacataatcagactaaatagctagctgctgtcaagcacatctgaagaggcgatctgatagatgacaacgttcagcgggagataatcaatcacaggtcgctgaggcatcctaacataattaggctcagagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggaggggagctttttgagagaatctgtaatgcggcgcgcttcaatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25232" stop="28163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25532" g_stop="25852" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="396" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27863" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="494" r_length="98" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E278037" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25532" e_stop="25852"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGA</genome_strand>
        <mrna_strand>AATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGCTCCGGTAACTGGTGACCATTGGTGAGAAAGCTTTGGGATGTTAATCGAGCTTAGTTTGAGCTGAATCTGACGTAGCAGACTAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACTATAGTGACCGATACGATTTTGTTAGAGATATCGGGTCGCGTTACTGTGGCGTTGCGAGGTTGATGACACATAATCAGACTAAATAGCTAGCTGCTGTCAAGCACATCTGAAGAGGCGATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGACAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGCTCAGAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGAGGGGAGCTTTTTGAGAGAATCTGTAATGCGGCGCGCTTCAATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338699" ref_strand="+" ref_description="SGN-E338699 [cTOE-21-A17]">
      <seq>gacttatcactactcggttctttgtgttggttggtcaaccggtagtattcagctccgatcaccagttccggtaactggtaaccattggtgagaaagctttgggatgtaaatcgagcttagtttgagctgaatctgaggtagcagacgaaatggatcgaggtccgggaccgtgtatggatatgccgatcatgcacgatagtgaccggtacgattttgttagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtacatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25236" stop="27948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25536" g_stop="25852" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27648" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="354" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E338699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25536" e_stop="25852"/>
          <exon e_start="27612" e_stop="27648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACA</genome_strand>
        <mrna_strand>GACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331508" ref_strand="+" ref_description="SGN-E331508 [cTOD-9-G2]">
      <seq>cattggtgagaaagctttgggatgtaaatcgagcttagtttgagctgaatctgaggtagcagacgaaatggatcgaggtccgggaccgtgtatggatatgccgatcatgcacgatagtgaccggtaccgattttgttagagatatcgggtcgggtaactttggcgttgcgaggttgatgacagataagcagactaaagagctagttgctgtcaagtacatcgaaagaggcgataagatagatgaaaacgttcagcgggagataatcaatcacaggtcgctgaggcatcctaacataattaggttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatctctaatgcggggcgcttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25318" stop="28159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25618" g_stop="25852" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="311" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27859" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="405" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E331508" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25618" e_stop="25852"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTA-CGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAGGTTAGTTCCCTCTCTAAAATTTGGATTTATAGAATTAGTTTTATCTGGTGTTGGCAGTTGGTAAGATATTTTTGTGCAATCAATGTTTCTGGTGTTAGTTTGGGTTGTATTCTTTCTTTGCAAACCTTGCCTAGATAATCAGATGAATGCAAGTTTGGTCGGTTCGTTTTATATAGAAAGTTTTAAATCATACCATACTTTAATTATAAGTGCAGATGAACACTGGTAATACTGGTACTCTGTACTTGTAATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATG</genome_strand>
        <mrna_strand>CATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACCGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573351" ref_strand="+" ref_description="SGN-E573351 [32648]">
      <seq>atcttagatctgcctttaataaattgtgactgttaaatgaggtcgtccattggtgggagttcccggaactactttttagcagatttatttatagcaggatagttgtgataaattcgttgaactctttaacagagtaagaacattgatcatttactgctgtttcgggtagctatcaaaatggttatctaaaagaggctgatttagcttcaactttgtattctggtaagtgtagtaacatgtaccacttggtaattttttgtacactgggtgctaatcaatttactgctctaactgtctgggaaaggttctgctttgagaaatcttctgtctggtttgtcaagaaaagtacacctggagaaatcttctgtctgctttgtattggattgtactccaatgcttaaatgtgacatggtctactgcttgcaattgtataccttttaatggagcaactgctagtctctcccttcgacacattagatgaaaggatcaattcaacagtatggacaaagttagttgtggatattatatcagggtccatataacactgctcatttcttctcccatcttctgggcttgcacgattagatgaaaacgttcagcgggagattaatcaatcacaggtccctgaggcatcctaacataattaggttccaaggaggtgattctgaccggcagatcatctcggctattgtgatggagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25803" stop="28108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26103" g_stop="26463" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26464" i_stop="27146" i_length="683">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.532" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27147" g_stop="27155" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="372" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27156" i_stop="27405" i_length="250">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27406" g_stop="27686" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="658" r_length="286" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27766" g_stop="27808" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="703" r_length="45" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E573351" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26103" e_stop="26463"/>
          <exon e_start="27147" e_stop="27155"/>
          <exon e_start="27406" e_stop="27686"/>
          <exon e_start="27766" e_stop="27808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTA-TTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGC-TTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCA-GCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCT-GGCTTGCA-GA-TAGATGAAAACGTTCAGCGGGAGA-TAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTT-CAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGA-CGCCAACTCATCTC-GCTATTGTGATGGAGTATG</genome_strand>
        <mrna_strand>ATCTTAGATCTGCCTTTAATAAATTGTGACTGTTAAATGAGGTCGTCCATTGGTGGGAGTTCCCGGAACTACTTTTTAGCAGATTTATTTATAGCAGGATAGTTGTGATAAATTCGTTGAACTCTTTAACAGAGTAAGAACATTGATCATTTACTGCTGTTTCGGGTAGCTATCAAAATGGTTATCTAAAAGAGGCTGATTTAGCTTCAACTTTGTATTCTGGTAAGTGTAGTAACATGTACCACTTGGTAATTTTTTGTACACTGGGTGCTAATCAATTTACTGCTCTAACTGTCTGGGAAAGGTTCTGCTTTGAGAAATCTTCTGTCTGGTTTGTCAAGAAAAGTACACCTGGAGAAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGC..........................................................................................................................................................................................................................................................TTTGTATTGGATTGTACTCCAATGCTTAAATGTGACATGGTCTACTGCTTGCAATTGTATACCTTTTAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGGACA-AAGTTAGTTGTGGATATTATATCAGGGTCCATATAACACTGCTCATTTCTTCTCCCATCTTCTGGGCTTGCACGATTAGATGAAAACGTTCAGCGGGAGATTAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCCAAGGAG...............................................................................GTGATTCTGACCGGCAGATCATCTCGGCTATTGTGATGGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576840" ref_strand="+" ref_description="SGN-E576840 [60122]">
      <seq>cttagatctgcctttaataaattgtgaatgttaaatgaggtcgttcattggtgggagtttccgcgaactactttttagcagatttatttatagcaggatagttgtgataaattcgttgaactctttaacagagtaagaacattgatcatttactgctgtttcgggtagctatcaaaatggttatctaaaagaggctgatttagcttcaactttgtattctgatagatgaaaacgttcagcgggagataatcaatcacaggtccctgaggcatcctaacataattaggttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatttctaatgcagggcgcttcaatgaggatgaggctcgcttcttcttccagcaacttatatctggtgtcagctactgtcactccatgcaagtatgtcatcgggacttgaagctggaaaatacattgcttgatggaagccctgctcctcggctaaaaatttgtgattttgggtattccaagtctgctctgctgcattcacagccaaaatcaactgtgggaactcctgcttatattgcaccagaagttctgttgaggaaagaatatgatggcaagattgcagatgtctggtcgtgtggagtgacattgtatgtcatgttaatgggtgcttacccttttgaggatcctgatgaaccaaaagatttcggaagacgatcaatagaatcctgagcgtgcagtattctgttcctgagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="25805" stop="30133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26105" g_stop="26323" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26324" i_stop="27611" i_length="1288">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="296" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27867" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="398" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27950" g_stop="28003" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28097" g_stop="28189" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="545" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28299" g_stop="28391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="638" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29605" g_stop="29709" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="742" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29797" g_stop="29833" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="779" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E576840" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26105" e_stop="26323"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27867"/>
          <exon e_start="27950" e_stop="28003"/>
          <exon e_start="28097" e_stop="28189"/>
          <exon e_start="28299" e_stop="28391"/>
          <exon e_start="29605" e_stop="29709"/>
          <exon e_start="29797" e_stop="29833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCG-GAACTACTTTTTAGCAGATTTA-TTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACTCGATTCCAGAAGCTATAACTCAAGAGGTGAAAATTGTGCAAGATGATACAAAGAGACTACAAATCATACCACAAAAAATACTAGGTGATTCTTCCTATTTGTCCAAGTTCTTATAGACAGAGTTACCCAAATACATGTGTTTGTATGAGGTTGCAGGTACCTTGTGGAGTGTTAGTCGAGGTGCACGCAAGTTGGCATGACATGACTCTTATAGAAAAAAAGAGACTAAAACTCATACCCCTCAAGTTCTCAACAACTGTGAGACTTTATGACACTGATCCCCACGCCTAGGACTAAATATTTGGAGTGCAAGTAATGTAAATGTCAGTCCAGCATTGAGTAACTAACATCATGGATGAGTCTGGCTCTGGTTCCCTATTCGGAAGTTGGACTCAACTCAACAATAGAAGTTAGTGCAAGAGATGGGGATAGAACAAAACCATATAGTGAGACAGTAACTATTGCCCCAAATGGTTGGGCCTCTAACATGGTTTGAGCATATTTAGACAATAAGTGTGTATGGAACCCTCATTCTCGTGTTTGTGAATATATTAGACATCCCCATATGTAGATAATCTGAGGAATGGAGAGTATTACAGTAAAGTTATTACAGTAAAATTATTCATTCCAGTGGATTTTTAGTTGCAAAATGTATTAACTAATTGTGGCATATGGTCTTCCAGGCTGTATGCATGCCTTTCTATTTAGGTATTACCGGTTTACTGTAATCATGTGCCTACAGCCATGTTTTGCCTTGAGTTACTTGTGCTTTAACATGTTTATATTCTTTCTTGACCTACAGTTACTATAATATGTGTTTCTACAACCAAAAAGATGTATTTGATATTTATAAAGATATTTGTGCTCTTTAGGCAAAATAATTGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAGGTATTTAATCTGCTAATATTATAGAACACTGCAGTTACAGCTGTGCGAGATTTATGAGGTTACATAATCTCTTCCTGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAGGTAATTGGTCCGCCCCATCATTAGCGGTCTGAATTTTATAAAAAGGTACATATGCAGCTGTATACATGTATTGCCCGGTTTCTTAATCAAAAACTTGCATTTTTTGCAGTCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAGGTAAATTGGTTTAATGCGTCAGTACTGTCACTTCATGTAACAAAGTACTAACGGCAAGTACCAATAATTTTTGTTGTGGAATTTTCTTTTCTGATGCATATGAATCATTCTTGCACTTCCGAATTGGGATATTATTTGACTGACATTTACTTGTTGTCTTGTCTGGACTGTCCAGCTGAGAATGCTTCATGTCCGCCAAAAAAGGGCATATGGTTTTCGTGATGAACAGAGGCATAACTGGATTCAGTAGATTACTTTACTTGACCCCCCTTCCATTAGTGTGCTCCAAAAAAGAGGAGCAAATAGGATAGGAGGATAGGAGTGTGCACACGTTCGCCACAGGACTCTTGCCCACCAAAAAAAAAAGGAAGAAAGAAGAATGAATAGATTATGAAATTTGAGCCATCTTAAAGGTACCTAAGGGAGCTTATAGAACTACATATCTGGGTGACTGAAATATAAAGAAAGCTGAGACTAATTAAAGGAGCATTTGTGGCCCATTTCACTTGAGGTTGCATTATGTTGGGGTAAGCAATCTTGTAATTTCAGCTAATCTAAGTTCATATCCTTTTTGAGGATTTGACCTTATCTCCACACAATAGCTAGTCTAGTCCTGTTATTTTAGTTATGCTATATACGTAAAAGTGAGGTTCAAGAAGTTGGTTGATTCTGTTCAGAAAAATGAATCACAGTTATAAATTCAGAAACAAAACCTTGCTATTTTCTGAACCCAAGTTCCAAAGGACTAGGTTCTGTTAGCGCTGGCCATTTGGACAACCTCTAATGTTGGTTCCTGTTAACCAACCTTCTCAAAATGTAACATAAAAATTAGGCTGTGTGTGTGTTCACATAGTGAAGGGATGTTGCGTTTCTGACGGAGGAGAAGTGGAAGGACGAACACTTCTATTGCAGGGAAGTCACAAAACAAAGTAATGTAACTAGAAGCTACCTCAACTTTCTCTGTAACTAGCTTATGTAGGTTTGTGATGGCTTAAATAGTAAAGGATATTTCTGTTGCCGGAATGAATTTTACCCTTAACCATGGCCTTGTAACACATGTGTCAAGTCTTTTTTCTTTCGAGGATGTTAACACCTCATTCTAAAGTACATCTTTAATTTGTATTTTGATGTGTTGAGTACTTGGTTTTTTATCAATTATGGTTAATTACTTTTGCACTTTACAGTAGAATATCACTGATTGTTTTTATTTCAGATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAATGTACATCTTTATCATTTGCATGATTTTGTTCCACTTTCTAGTGGATTTTTTATTAAAATAAAATTTTATCTGCTTTTTGCTACACAGAGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACA</genome_strand>
        <mrna_strand>CTTAGATCTGCCTTTAATAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGGGAGTTTCCGCGAACTACTTTTTAGCAGATTTATTTATAGCAGGATAGTTGTGATAAATTCGTTGAACTCTTTAACAGAGTAAGAACATTGATCATTTACTGCTGTTTCGGGTAGCTATCAAAATGGTTATCTAAAAGAGGCTGATTTAGCTTCAACTTTGTATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATTTCTAATGCAGGGCGCTTCAATGAGGATGAG..................................................................................GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACATTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG.............................................................................................................TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACTCCTGCTTATATTGCACCAGAAGTTCTGTTGAGGAAAGAATATGATGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAATGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGA-TTTCGGAAGACGATCAAT.......................................................................................AGAATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459493" ref_strand="+" ref_description="SGN-E459493 [cPRO-28-C19]">
      <seq>tgcaacaaaataacaataatgaaataaataaacaaatacaactagaagtattgatgaaactttgtattggattgtactccaatgcttaaatgtgacatggtctactgcttgcaattgtagaccttttaatggagcaactgctagtctctcccttcgacacattagatgaaaggatcaattcaacagtatgatgacaaatagatgaaaacgttcagcgagagataatcaatcacaggtccctgaggcatcctaacataattaggctcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatttctaatgcagggcgcttcaatgaggatgaggctcgcttcttcttccagccacttatatctggtgtcagctactgtcactccatgcaagtatgtcatcgggacttgaagctggaaaatacattgcttgatggaagccctgctcctcggctaaaactttgtgattttgggtattccaagtctgctctgctgcattcacagccaaaatcaactgtgggaactcctgcttatattgcaccagaagttctgttgangaaagatatgatgggcagattgcagatgtctggtcgtgtggagtgacattgtatgtcatgntaatgggtgcttacccttttgaggatcctgatgaaccgaaagattttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="27046" stop="29996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27346" g_stop="27542" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27543" i_stop="27611" i_length="69">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27612" g_stop="27686" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="272" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27766" g_stop="27867" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="374" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27950" g_stop="28003" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="428" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.283" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28097" g_stop="28189" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="521" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28299" g_stop="28391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="613" r_length="92" r_score="0.914"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29605" g_stop="29696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="705" r_length="92" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E459493" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27346" e_stop="27542"/>
          <exon e_start="27612" e_stop="27686"/>
          <exon e_start="27766" e_stop="27867"/>
          <exon e_start="27950" e_stop="28003"/>
          <exon e_start="28097" e_stop="28189"/>
          <exon e_start="28299" e_stop="28391"/>
          <exon e_start="29605" e_stop="29696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAGGTATTTAATCTGCTAATATTATAGAACACTGCAGTTACAGCTGTGCGAGATTTATGAGGTTACATAATCTCTTCCTGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAGGTAATTGGTCCGCCCCATCATTAGCGGTCTGAATTTTATAAAAAGGTACATATGCAGCTGTATACATGTATTGCCCGGTTTCTTAATCAAAAACTTGCATTTTTTGCAGTCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAGGTAAATTGGTTTAATGCGTCAGTACTGTCACTTCATGTAACAAAGTACTAACGGCAAGTACCAATAATTTTTGTTGTGGAATTTTCTTTTCTGATGCATATGAATCATTCTTGCACTTCCGAATTGGGATATTATTTGACTGACATTTACTTGTTGTCTTGTCTGGACTGTCCAGCTGAGAATGCTTCATGTCCGCCAAAAAAGGGCATATGGTTTTCGTGATGAACAGAGGCATAACTGGATTCAGTAGATTACTTTACTTGACCCCCCTTCCATTAGTGTGCTCCAAAAAAGAGGAGCAAATAGGATAGGAGGATAGGAGTGTGCACACGTTCGCCACAGGACTCTTGCCCACCAAAAAAAAAAGGAAGAAAGAAGAATGAATAGATTATGAAATTTGAGCCATCTTAAAGGTACCTAAGGGAGCTTATAGAACTACATATCTGGGTGACTGAAATATAAAGAAAGCTGAGACTAATTAAAGGAGCATTTGTGGCCCATTTCACTTGAGGTTGCATTATGTTGGGGTAAGCAATCTTGTAATTTCAGCTAATCTAAGTTCATATCCTTTTTGAGGATTTGACCTTATCTCCACACAATAGCTAGTCTAGTCCTGTTATTTTAGTTATGCTATATACGTAAAAGTGAGGTTCAAGAAGTTGGTTGATTCTGTTCAGAAAAATGAATCACAGTTATAAATTCAGAAACAAAACCTTGCTATTTTCTGAACCCAAGTTCCAAAGGACTAGGTTCTGTTAGCGCTGGCCATTTGGACAACCTCTAATGTTGGTTCCTGTTAACCAACCTTCTCAAAATGTAACATAAAAATTAGGCTGTGTGTGTGTTCACATAGTGAAGGGATGTTGCGTTTCTGACGGAGGAGAAGTGGAAGGACGAACACTTCTATTGCAGGGAAGTCACAAAACAAAGTAATGTAACTAGAAGCTACCTCAACTTTCTCTGTAACTAGCTTATGTAGGTTTGTGATGGCTTAAATAGTAAAGGATATTTCTGTTGCCGGAATGAATTTTACCCTTAACCATGGCCTTGTAACACATGTGTCAAGTCTTTTTTCTTTCGAGGATGTTAACACCTCATTCTAAAGTACATCTTTAATTTGTATTTTGATGTGTTGAGTACTTGGTTTTTTATCAATTATGGTTAATTACTTTTGCACTTTACAGTAGAATATCACTGATTGTTTTTATTTCAGATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCG</genome_strand>
        <mrna_strand>TGCAACAAAATAACAATAATGAAATAAATAAACAAATACAACTAGAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATGCTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTTAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAA.....................................................................ATAGATGAAAACGTTCAGCGAGAGATAATCAATCACAGGTCCCTGAGGCATCCTAACATAATTAGGCTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATTTCTAATGCAGGGCGCTTCAATGAGGATGAG..................................................................................GCTCGCTTCTTCTTCCAGCCACTTATATCTGGTGTCAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACATTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAACTTTGTGATTTTGGGTATTCCAAG.............................................................................................................TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACTCCTGCTTATATTGCACCAGAAGTTCTGTTGANGAAAG-ATATGATGGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGNTAATGGGTGCTTACCCTTTTGAGGATCCTGATGAACCGAAAGATTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710438" ref_strand="+" ref_description="SGN-E710438 [FA55BG03]">
      <seq>cattattaggttcaaagaggtgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatctctaatgcggggcgcttcaatgaggatgaggctcgcttcttcttccagcaacttatatctggtgtcagctactgtcactccatgcaagtatgtcatcgggacttgaagctggaaaatacgttgcttgatggaagccctgctcctcggctaaaaatttgtgattttgggtattccaagtctgctctgctgcattcacagccaaaatcaactgtgggaacacctgcatatattgcaccagaagttttgttgaggaaagaatacgatggcaagattgcagatgtctggtcgtgtggagtgacattgtatgtcatgttagtgggtgcttacccttttgaggatcctgatgaaccaaaagattttcggaagacgatcaataggatcctgagcgtgcagtattctgttcctgagaacattcagatatctgaggaatgtcgccacttaatctcaaggatctttgttggagatccggcacagaggatcacaatgcctgaaatcaggaatcatgtatggtttttgaagaatcttccagcggacttaatagacgataggatgattagtgatcagtttgaagaacccgatcaaccaatgcagagccattgatacgatcatgcaaataatctccgaggcaacagtacccaccaattggcttgtataacttggaaatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="27368" stop="30830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27668" g_stop="27686" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27766" g_stop="27867" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="121" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27950" g_stop="28003" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="175" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28097" g_stop="28189" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="268" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28299" g_stop="28391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="361" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29605" g_stop="29709" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="466" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29797" g_stop="29895" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="565" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30337" g_stop="30530" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="761" r_length="196" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E710438" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27668" e_stop="27686"/>
          <exon e_start="27766" e_stop="27867"/>
          <exon e_start="27950" e_stop="28003"/>
          <exon e_start="28097" e_stop="28189"/>
          <exon e_start="28299" e_stop="28391"/>
          <exon e_start="29605" e_stop="29709"/>
          <exon e_start="29797" e_stop="29895"/>
          <exon e_start="30337" e_stop="30530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAGGTATTTAATCTGCTAATATTATAGAACACTGCAGTTACAGCTGTGCGAGATTTATGAGGTTACATAATCTCTTCCTGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAGGTAATTGGTCCGCCCCATCATTAGCGGTCTGAATTTTATAAAAAGGTACATATGCAGCTGTATACATGTATTGCCCGGTTTCTTAATCAAAAACTTGCATTTTTTGCAGTCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAGGTAAATTGGTTTAATGCGTCAGTACTGTCACTTCATGTAACAAAGTACTAACGGCAAGTACCAATAATTTTTGTTGTGGAATTTTCTTTTCTGATGCATATGAATCATTCTTGCACTTCCGAATTGGGATATTATTTGACTGACATTTACTTGTTGTCTTGTCTGGACTGTCCAGCTGAGAATGCTTCATGTCCGCCAAAAAAGGGCATATGGTTTTCGTGATGAACAGAGGCATAACTGGATTCAGTAGATTACTTTACTTGACCCCCCTTCCATTAGTGTGCTCCAAAAAAGAGGAGCAAATAGGATAGGAGGATAGGAGTGTGCACACGTTCGCCACAGGACTCTTGCCCACCAAAAAAAAAAGGAAGAAAGAAGAATGAATAGATTATGAAATTTGAGCCATCTTAAAGGTACCTAAGGGAGCTTATAGAACTACATATCTGGGTGACTGAAATATAAAGAAAGCTGAGACTAATTAAAGGAGCATTTGTGGCCCATTTCACTTGAGGTTGCATTATGTTGGGGTAAGCAATCTTGTAATTTCAGCTAATCTAAGTTCATATCCTTTTTGAGGATTTGACCTTATCTCCACACAATAGCTAGTCTAGTCCTGTTATTTTAGTTATGCTATATACGTAAAAGTGAGGTTCAAGAAGTTGGTTGATTCTGTTCAGAAAAATGAATCACAGTTATAAATTCAGAAACAAAACCTTGCTATTTTCTGAACCCAAGTTCCAAAGGACTAGGTTCTGTTAGCGCTGGCCATTTGGACAACCTCTAATGTTGGTTCCTGTTAACCAACCTTCTCAAAATGTAACATAAAAATTAGGCTGTGTGTGTGTTCACATAGTGAAGGGATGTTGCGTTTCTGACGGAGGAGAAGTGGAAGGACGAACACTTCTATTGCAGGGAAGTCACAAAACAAAGTAATGTAACTAGAAGCTACCTCAACTTTCTCTGTAACTAGCTTATGTAGGTTTGTGATGGCTTAAATAGTAAAGGATATTTCTGTTGCCGGAATGAATTTTACCCTTAACCATGGCCTTGTAACACATGTGTCAAGTCTTTTTTCTTTCGAGGATGTTAACACCTCATTCTAAAGTACATCTTTAATTTGTATTTTGATGTGTTGAGTACTTGGTTTTTTATCAATTATGGTTAATTACTTTTGCACTTTACAGTAGAATATCACTGATTGTTTTTATTTCAGATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAATGTACATCTTTATCATTTGCATGATTTTGTTCCACTTTCTAGTGGATTTTTTATTAAAATAAAATTTTATCTGCTTTTTGCTACACAGAGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAGGTTAGTGAGGTTTTAAGAGTAATCAGTACACAGAAGTGAGTACATAAGAGTTTTGGAATGTTTCTGCTGTGATTGCATTGGGACTTCAATTATGATTGATCTGGACCAATCTTGCCTATTGTTGTAGTTGCGTACCACTTAAGGCATCTCTTTAAATATGTTGTTCCAAGTTCCTTCTTATATGGACCTGTTTGACTGGCAGGAGGTTGAAGAATATAATTTGACTAGTGTATTGTACTCGTAATAGTAGGAAATACATACATTAGTTATAGAAGAACTTAAACTGGGAAGAAGAGAACAATAGCCAGAATCTTGTAGTTTCTTTAGTGTGAAAAACATTTTGAGATACTGCAAAAAGGGCGCTACATAGTAGTCCTGAAGATAATATAGATTGTAGTTGTCACTTATTCTTAAGTCATCTTTCTTTTGCACATGGCACAGAGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAG-CATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTA-CCACCAATTGGCTTGTATAACTTGGAAATGATGGA</genome_strand>
        <mrna_strand>CATTATTAGGTTCAAAGAG...............................................................................GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAG..................................................................................GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG.............................................................................................................TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT.......................................................................................AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCCATTGATACGATCATGCAAATAATCTCCGAGGCAACAGTACCCACCAATTGGCTTGTATAACTTGGAAATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263674" ref_strand="+" ref_description="SGN-E263674 [cLEG-60-O13]">
      <seq>tgattctgacgccaactcatctcgctattgtgatggagtatgcatctggtggggagctttttgagagaatctctaatgcggggcgcttcaatgaggatgaggctcgcttcttcttccagcaacttatatctggtgtcagctactgtcactccatgcaagtatgtcatcgggacttgaagctggaaaatacgttgcttgatggaagccctgctcctcggctaaaaatttgtgattttgggtattccaagtctgctctgctgcattcacagccaaaatcaactgtgggaacacctgcatatattgcaccagaagttttgttgaggaaagaatacgatggcaagattgcagatgtctggtcgtgtggagtgacattgtatgtcatgttagtgggtgcttacccttttgaggatcctgatgaaccaaaagattttcggaagacgatcaataggatcctgagcgtgcagtattctgttcctgagaacattcagatatctgaggaatgtcgccacttaatctcaaggatctttgttggagatccggcacagaggatcacaatgcctgaaatcaggaatcatgtatggtttttgaagaatcttccagcggacttaatagacgataggatgattagtgatcagtttgaagaacccgatcaaccaatgcagagcattgatacgatcatgcaaataatctcagaggcaacagtaccaccaattggcttgtataacttggaaatgatggacgatgacatggatgacttggattcagagcctgatcttgatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="27467" stop="30874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27767" g_stop="27867" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27950" g_stop="28003" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="155" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28097" g_stop="28189" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="248" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28299" g_stop="28391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="341" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29605" g_stop="29709" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="446" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29797" g_stop="29895" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="545" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30337" g_stop="30574" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="783" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E263674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27767" e_stop="27867"/>
          <exon e_start="27950" e_stop="28003"/>
          <exon e_start="28097" e_stop="28189"/>
          <exon e_start="28299" e_stop="28391"/>
          <exon e_start="29605" e_stop="29709"/>
          <exon e_start="29797" e_stop="29895"/>
          <exon e_start="30337" e_stop="30574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAGGTATTTAATCTGCTAATATTATAGAACACTGCAGTTACAGCTGTGCGAGATTTATGAGGTTACATAATCTCTTCCTGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAGGTAATTGGTCCGCCCCATCATTAGCGGTCTGAATTTTATAAAAAGGTACATATGCAGCTGTATACATGTATTGCCCGGTTTCTTAATCAAAAACTTGCATTTTTTGCAGTCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAGGTAAATTGGTTTAATGCGTCAGTACTGTCACTTCATGTAACAAAGTACTAACGGCAAGTACCAATAATTTTTGTTGTGGAATTTTCTTTTCTGATGCATATGAATCATTCTTGCACTTCCGAATTGGGATATTATTTGACTGACATTTACTTGTTGTCTTGTCTGGACTGTCCAGCTGAGAATGCTTCATGTCCGCCAAAAAAGGGCATATGGTTTTCGTGATGAACAGAGGCATAACTGGATTCAGTAGATTACTTTACTTGACCCCCCTTCCATTAGTGTGCTCCAAAAAAGAGGAGCAAATAGGATAGGAGGATAGGAGTGTGCACACGTTCGCCACAGGACTCTTGCCCACCAAAAAAAAAAGGAAGAAAGAAGAATGAATAGATTATGAAATTTGAGCCATCTTAAAGGTACCTAAGGGAGCTTATAGAACTACATATCTGGGTGACTGAAATATAAAGAAAGCTGAGACTAATTAAAGGAGCATTTGTGGCCCATTTCACTTGAGGTTGCATTATGTTGGGGTAAGCAATCTTGTAATTTCAGCTAATCTAAGTTCATATCCTTTTTGAGGATTTGACCTTATCTCCACACAATAGCTAGTCTAGTCCTGTTATTTTAGTTATGCTATATACGTAAAAGTGAGGTTCAAGAAGTTGGTTGATTCTGTTCAGAAAAATGAATCACAGTTATAAATTCAGAAACAAAACCTTGCTATTTTCTGAACCCAAGTTCCAAAGGACTAGGTTCTGTTAGCGCTGGCCATTTGGACAACCTCTAATGTTGGTTCCTGTTAACCAACCTTCTCAAAATGTAACATAAAAATTAGGCTGTGTGTGTGTTCACATAGTGAAGGGATGTTGCGTTTCTGACGGAGGAGAAGTGGAAGGACGAACACTTCTATTGCAGGGAAGTCACAAAACAAAGTAATGTAACTAGAAGCTACCTCAACTTTCTCTGTAACTAGCTTATGTAGGTTTGTGATGGCTTAAATAGTAAAGGATATTTCTGTTGCCGGAATGAATTTTACCCTTAACCATGGCCTTGTAACACATGTGTCAAGTCTTTTTTCTTTCGAGGATGTTAACACCTCATTCTAAAGTACATCTTTAATTTGTATTTTGATGTGTTGAGTACTTGGTTTTTTATCAATTATGGTTAATTACTTTTGCACTTTACAGTAGAATATCACTGATTGTTTTTATTTCAGATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAATGTACATCTTTATCATTTGCATGATTTTGTTCCACTTTCTAGTGGATTTTTTATTAAAATAAAATTTTATCTGCTTTTTGCTACACAGAGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAGGTTAGTGAGGTTTTAAGAGTAATCAGTACACAGAAGTGAGTACATAAGAGTTTTGGAATGTTTCTGCTGTGATTGCATTGGGACTTCAATTATGATTGATCTGGACCAATCTTGCCTATTGTTGTAGTTGCGTACCACTTAAGGCATCTCTTTAAATATGTTGTTCCAAGTTCCTTCTTATATGGACCTGTTTGACTGGCAGGAGGTTGAAGAATATAATTTGACTAGTGTATTGTACTCGTAATAGTAGGAAATACATACATTAGTTATAGAAGAACTTAAACTGGGAAGAAGAGAACAATAGCCAGAATCTTGTAGTTTCTTTAGTGTGAAAAACATTTTGAGATACTGCAAAAAGGGCGCTACATAGTAGTCCTGAAGATAATATAGATTGTAGTTGTCACTTATTCTTAAGTCATCTTTCTTTTGCACATGGCACAGAGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTG</genome_strand>
        <mrna_strand>TGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAG..................................................................................GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG.............................................................................................................TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT.......................................................................................AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458151" ref_strand="+" ref_description="SGN-E458151 [cPRO-4-H12]">
      <seq>ggatgaggctcgcttcttcttccagcaacttatatctggtgtcagctactgtcactccatgcaagtatgtcatcgggacttgaagctggaaaatacattgcttgatggaagccctgctcctcggctaaaaatttgtgattttgggtattccaagtctgctctgctgcattcacagccaaaatcaactgtgggaactcctgcttatattgcaccagaagttctgttgaggaaagaatatgatggcaagattgcagatgtctggtcgtgtggagtgacattgtatgtcatgttaatgggtgcttacccttttgaggatcctgatgaaccaaaagattttcggaagacgatcaatagaatcctgagcgtgcagtattctgttcctgagaacattcagatatctgaggaaatgtcgccacttaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="27644" stop="30167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27943" g_stop="28003" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28097" g_stop="28189" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="154" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28299" g_stop="28391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="247" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29605" g_stop="29709" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="352" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29797" g_stop="29867" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E458151" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27943" e_stop="28003"/>
          <exon e_start="28097" e_stop="28189"/>
          <exon e_start="28299" e_stop="28391"/>
          <exon e_start="29605" e_stop="29709"/>
          <exon e_start="29797" e_stop="29867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAGGTAATTGGTCCGCCCCATCATTAGCGGTCTGAATTTTATAAAAAGGTACATATGCAGCTGTATACATGTATTGCCCGGTTTCTTAATCAAAAACTTGCATTTTTTGCAGTCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAGGTAAATTGGTTTAATGCGTCAGTACTGTCACTTCATGTAACAAAGTACTAACGGCAAGTACCAATAATTTTTGTTGTGGAATTTTCTTTTCTGATGCATATGAATCATTCTTGCACTTCCGAATTGGGATATTATTTGACTGACATTTACTTGTTGTCTTGTCTGGACTGTCCAGCTGAGAATGCTTCATGTCCGCCAAAAAAGGGCATATGGTTTTCGTGATGAACAGAGGCATAACTGGATTCAGTAGATTACTTTACTTGACCCCCCTTCCATTAGTGTGCTCCAAAAAAGAGGAGCAAATAGGATAGGAGGATAGGAGTGTGCACACGTTCGCCACAGGACTCTTGCCCACCAAAAAAAAAAGGAAGAAAGAAGAATGAATAGATTATGAAATTTGAGCCATCTTAAAGGTACCTAAGGGAGCTTATAGAACTACATATCTGGGTGACTGAAATATAAAGAAAGCTGAGACTAATTAAAGGAGCATTTGTGGCCCATTTCACTTGAGGTTGCATTATGTTGGGGTAAGCAATCTTGTAATTTCAGCTAATCTAAGTTCATATCCTTTTTGAGGATTTGACCTTATCTCCACACAATAGCTAGTCTAGTCCTGTTATTTTAGTTATGCTATATACGTAAAAGTGAGGTTCAAGAAGTTGGTTGATTCTGTTCAGAAAAATGAATCACAGTTATAAATTCAGAAACAAAACCTTGCTATTTTCTGAACCCAAGTTCCAAAGGACTAGGTTCTGTTAGCGCTGGCCATTTGGACAACCTCTAATGTTGGTTCCTGTTAACCAACCTTCTCAAAATGTAACATAAAAATTAGGCTGTGTGTGTGTTCACATAGTGAAGGGATGTTGCGTTTCTGACGGAGGAGAAGTGGAAGGACGAACACTTCTATTGCAGGGAAGTCACAAAACAAAGTAATGTAACTAGAAGCTACCTCAACTTTCTCTGTAACTAGCTTATGTAGGTTTGTGATGGCTTAAATAGTAAAGGATATTTCTGTTGCCGGAATGAATTTTACCCTTAACCATGGCCTTGTAACACATGTGTCAAGTCTTTTTTCTTTCGAGGATGTTAACACCTCATTCTAAAGTACATCTTTAATTTGTATTTTGATGTGTTGAGTACTTGGTTTTTTATCAATTATGGTTAATTACTTTTGCACTTTACAGTAGAATATCACTGATTGTTTTTATTTCAGATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAATGTACATCTTTATCATTTGCATGATTTTGTTCCACTTTCTAGTGGATTTTTTATTAAAATAAAATTTTATCTGCTTTTTGCTACACAGAGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGG-AATGTCGCCACTTAATCTC</genome_strand>
        <mrna_strand>GGATGAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACATTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG.............................................................................................................TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACTCCTGCTTATATTGCACCAGAAGTTCTGTTGAGGAAAGAATATGATGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAATGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT.......................................................................................AGAATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAAATGTCGCCACTTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345222" ref_strand="+" ref_description="SGN-E345222 [cTOF-13-C10]">
      <seq>tccatgcaagtatgtcatcgggacttgaagctggaaaatacgttgcttgatggaagccctgctcctcggctaaaaatttgtgattttgggtattccaagtctgctctgctgcattcacagccaaaatcaactgtgggaacacctgcatatattgcaccagaagttttgttgaggaaagaatacgatggcaagattgcagatgtctggtcgtgtggagtgacattgtatgtcatgttagtgggtgcttacccttttgaggatcctgatgaaccaaaagattttcggaagacgatcaataggatcctgagcgtgcagtattctgttcctgagaacattcagatatctgaggaatgtcgccacttaatctcaaggatctttgttggagatccggcacagaggatcacaatgcctgaaatcaggaatcatgtatggtttttgaagaatcttccagcggacttaatagacgataggatgattagtgatcagtttgaagaacccgatcaaccaatgcagagcattgatacgatcatgcaaataatctcagaggcaacagtaccaccaattggcttgtataacttggaaatgatggacgatgacatggatgacttggattcagagcctgatcttgatattgatagcagcggggagatcatatatgcaatgtgagtgcatgccaagcttgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="27791" stop="30927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27998" g_stop="28003" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.283" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28097" g_stop="28189" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="99" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28299" g_stop="28391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="192" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29605" g_stop="29709" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="297" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29797" g_stop="29895" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="396" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30337" g_stop="30627" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="687" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E345222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27998" e_stop="28003"/>
          <exon e_start="28097" e_stop="28189"/>
          <exon e_start="28299" e_stop="28391"/>
          <exon e_start="29605" e_stop="29709"/>
          <exon e_start="29797" e_stop="29895"/>
          <exon e_start="30337" e_stop="30627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGGTATGGACTTCCCTGAAATATTTTCTCAGTTTCATTAAATGTGGAGATCTTGGAAATTTATTAAGCATGTTTGTGTTCTATTTCTTCTCGAAGCAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAGGTAATTGGTCCGCCCCATCATTAGCGGTCTGAATTTTATAAAAAGGTACATATGCAGCTGTATACATGTATTGCCCGGTTTCTTAATCAAAAACTTGCATTTTTTGCAGTCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAGGTAAATTGGTTTAATGCGTCAGTACTGTCACTTCATGTAACAAAGTACTAACGGCAAGTACCAATAATTTTTGTTGTGGAATTTTCTTTTCTGATGCATATGAATCATTCTTGCACTTCCGAATTGGGATATTATTTGACTGACATTTACTTGTTGTCTTGTCTGGACTGTCCAGCTGAGAATGCTTCATGTCCGCCAAAAAAGGGCATATGGTTTTCGTGATGAACAGAGGCATAACTGGATTCAGTAGATTACTTTACTTGACCCCCCTTCCATTAGTGTGCTCCAAAAAAGAGGAGCAAATAGGATAGGAGGATAGGAGTGTGCACACGTTCGCCACAGGACTCTTGCCCACCAAAAAAAAAAGGAAGAAAGAAGAATGAATAGATTATGAAATTTGAGCCATCTTAAAGGTACCTAAGGGAGCTTATAGAACTACATATCTGGGTGACTGAAATATAAAGAAAGCTGAGACTAATTAAAGGAGCATTTGTGGCCCATTTCACTTGAGGTTGCATTATGTTGGGGTAAGCAATCTTGTAATTTCAGCTAATCTAAGTTCATATCCTTTTTGAGGATTTGACCTTATCTCCACACAATAGCTAGTCTAGTCCTGTTATTTTAGTTATGCTATATACGTAAAAGTGAGGTTCAAGAAGTTGGTTGATTCTGTTCAGAAAAATGAATCACAGTTATAAATTCAGAAACAAAACCTTGCTATTTTCTGAACCCAAGTTCCAAAGGACTAGGTTCTGTTAGCGCTGGCCATTTGGACAACCTCTAATGTTGGTTCCTGTTAACCAACCTTCTCAAAATGTAACATAAAAATTAGGCTGTGTGTGTGTTCACATAGTGAAGGGATGTTGCGTTTCTGACGGAGGAGAAGTGGAAGGACGAACACTTCTATTGCAGGGAAGTCACAAAACAAAGTAATGTAACTAGAAGCTACCTCAACTTTCTCTGTAACTAGCTTATGTAGGTTTGTGATGGCTTAAATAGTAAAGGATATTTCTGTTGCCGGAATGAATTTTACCCTTAACCATGGCCTTGTAACACATGTGTCAAGTCTTTTTTCTTTCGAGGATGTTAACACCTCATTCTAAAGTACATCTTTAATTTGTATTTTGATGTGTTGAGTACTTGGTTTTTTATCAATTATGGTTAATTACTTTTGCACTTTACAGTAGAATATCACTGATTGTTTTTATTTCAGATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAATGTACATCTTTATCATTTGCATGATTTTGTTCCACTTTCTAGTGGATTTTTTATTAAAATAAAATTTTATCTGCTTTTTGCTACACAGAGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAGGTTAGTGAGGTTTTAAGAGTAATCAGTACACAGAAGTGAGTACATAAGAGTTTTGGAATGTTTCTGCTGTGATTGCATTGGGACTTCAATTATGATTGATCTGGACCAATCTTGCCTATTGTTGTAGTTGCGTACCACTTAAGGCATCTCTTTAAATATGTTGTTCCAAGTTCCTTCTTATATGGACCTGTTTGACTGGCAGGAGGTTGAAGAATATAATTTGACTAGTGTATTGTACTCGTAATAGTAGGAAATACATACATTAGTTATAGAAGAACTTAAACTGGGAAGAAGAGAACAATAGCCAGAATCTTGTAGTTTCTTTAGTGTGAAAAACATTTTGAGATACTGCAAAAAGGGCGCTACATAGTAGTCCTGAAGATAATATAGATTGTAGTTGTCACTTATTCTTAAGTCATCTTTCTTTTGCACATGGCACAGAGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAA</genome_strand>
        <mrna_strand>TCCATG.............................................................................................CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG.............................................................................................................TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT.......................................................................................AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475593" ref_strand="+" ref_description="SGN-E475593 [cSTB-41-G11]">
      <seq>gggacttgaagctggaaaatacattgcttgatggaagccctgctcctcggctaaaaatttgtgattttgggtattccaagtctgctctgctgcattcacagccaaaatcaactgtgggaactcctgcttatattgcaccagaagttctgttgaggaaagaatatgatggcaagattgcagatgtctggtcgtgtggagtgacattgtatgtcatgttaatgggtgcttacccgtttgaggatcctgatgaaccaaaagattttcggaagacgatcaatagaatcctgagcgtgcagtattctgttcctgagaacattcagatatctgaggaatgtcgccacttaatctcaaagatctttgttggagatccggcacagaggatcacaatgcctgaaatcagaaatcatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="27810" stop="30670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28110" g_stop="28189" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28299" g_stop="28391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="173" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29605" g_stop="29709" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="278" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29797" g_stop="29895" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="377" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441">
            <donor d_prob="0.823" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30337" g_stop="30370" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="411" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E475593" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28110" e_stop="28189"/>
          <exon e_start="28299" e_stop="28391"/>
          <exon e_start="29605" e_stop="29709"/>
          <exon e_start="29797" e_stop="29895"/>
          <exon e_start="30337" e_stop="30370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAGGTAATTGGTCCGCCCCATCATTAGCGGTCTGAATTTTATAAAAAGGTACATATGCAGCTGTATACATGTATTGCCCGGTTTCTTAATCAAAAACTTGCATTTTTTGCAGTCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAGGTAAATTGGTTTAATGCGTCAGTACTGTCACTTCATGTAACAAAGTACTAACGGCAAGTACCAATAATTTTTGTTGTGGAATTTTCTTTTCTGATGCATATGAATCATTCTTGCACTTCCGAATTGGGATATTATTTGACTGACATTTACTTGTTGTCTTGTCTGGACTGTCCAGCTGAGAATGCTTCATGTCCGCCAAAAAAGGGCATATGGTTTTCGTGATGAACAGAGGCATAACTGGATTCAGTAGATTACTTTACTTGACCCCCCTTCCATTAGTGTGCTCCAAAAAAGAGGAGCAAATAGGATAGGAGGATAGGAGTGTGCACACGTTCGCCACAGGACTCTTGCCCACCAAAAAAAAAAGGAAGAAAGAAGAATGAATAGATTATGAAATTTGAGCCATCTTAAAGGTACCTAAGGGAGCTTATAGAACTACATATCTGGGTGACTGAAATATAAAGAAAGCTGAGACTAATTAAAGGAGCATTTGTGGCCCATTTCACTTGAGGTTGCATTATGTTGGGGTAAGCAATCTTGTAATTTCAGCTAATCTAAGTTCATATCCTTTTTGAGGATTTGACCTTATCTCCACACAATAGCTAGTCTAGTCCTGTTATTTTAGTTATGCTATATACGTAAAAGTGAGGTTCAAGAAGTTGGTTGATTCTGTTCAGAAAAATGAATCACAGTTATAAATTCAGAAACAAAACCTTGCTATTTTCTGAACCCAAGTTCCAAAGGACTAGGTTCTGTTAGCGCTGGCCATTTGGACAACCTCTAATGTTGGTTCCTGTTAACCAACCTTCTCAAAATGTAACATAAAAATTAGGCTGTGTGTGTGTTCACATAGTGAAGGGATGTTGCGTTTCTGACGGAGGAGAAGTGGAAGGACGAACACTTCTATTGCAGGGAAGTCACAAAACAAAGTAATGTAACTAGAAGCTACCTCAACTTTCTCTGTAACTAGCTTATGTAGGTTTGTGATGGCTTAAATAGTAAAGGATATTTCTGTTGCCGGAATGAATTTTACCCTTAACCATGGCCTTGTAACACATGTGTCAAGTCTTTTTTCTTTCGAGGATGTTAACACCTCATTCTAAAGTACATCTTTAATTTGTATTTTGATGTGTTGAGTACTTGGTTTTTTATCAATTATGGTTAATTACTTTTGCACTTTACAGTAGAATATCACTGATTGTTTTTATTTCAGATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAATGTACATCTTTATCATTTGCATGATTTTGTTCCACTTTCTAGTGGATTTTTTATTAAAATAAAATTTTATCTGCTTTTTGCTACACAGAGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAGGTTAGTGAGGTTTTAAGAGTAATCAGTACACAGAAGTGAGTACATAAGAGTTTTGGAATGTTTCTGCTGTGATTGCATTGGGACTTCAATTATGATTGATCTGGACCAATCTTGCCTATTGTTGTAGTTGCGTACCACTTAAGGCATCTCTTTAAATATGTTGTTCCAAGTTCCTTCTTATATGGACCTGTTTGACTGGCAGGAGGTTGAAGAATATAATTTGACTAGTGTATTGTACTCGTAATAGTAGGAAATACATACATTAGTTATAGAAGAACTTAAACTGGGAAGAAGAGAACAATAGCCAGAATCTTGTAGTTTCTTTAGTGTGAAAAACATTTTGAGATACTGCAAAAAGGGCGCTACATAGTAGTCCTGAAGATAATATAGATTGTAGTTGTCACTTATTCTTAAGTCATCTTTCTTTTGCACATGGCACAGAGGATCACAATGCCTGAAATCAGGAATCATGTAT</genome_strand>
        <mrna_strand>GGGACTTGAAGCTGGAAAATACATTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG.............................................................................................................TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACTCCTGCTTATATTGCACCAGAAGTTCTGTTGAGGAAAGAATATGATGGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAATGGGTGCTTACCCGTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT.......................................................................................AGAATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAAGATCTTTGTTGGAGATCCGGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACAATGCCTGAAATCAGAAATCATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369498" ref_strand="+" ref_description="SGN-E369498 [TUS-23-K1](-)">
      <seq>gtatgtcatgttagtgggtgcttacccttttgaggatcctgatgaaccaaaagattttcggaagacgatcaataggatcctgagcgtgcagtattctgttcctgagaacattcagatatctgaggaatgtcgccacttaatctcaaggatctttgttggagatccggcacagaggatcacaatgcctgaaatcaggaatcatgtatggtttttgaagaatcttccagcggacttaatagacgataggatgattagtgatcagtttgaagaacccgatcaaccaatgcagagcattgatacgatcatgcaaataatctcagaggcaacagtaccaccaattggcttgtataacttggaaatgatggacgatgacatggatgacttggattcagagcctgatcttgatattgatagcagcggggagatcatatatgcaatgtgagtgcatgccaagcttgtgaaaaggaaggtgtatccacaatcttagaacatttctggacttgttggtgtgcaaggcttagagattgttgaagctcagtaacatgaaaatggggtatttacaatgtttgtaattagtcaagttcttatcctgaaaggggcttttagtctgcccatgaattatttcttctattaccataggaggaattggctgaaaaagtaatggagtttccatacttgagttcataatctctttataatgtcatacagtgttgttcttttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="29337" stop="31188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29637" g_stop="29709" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29797" g_stop="29895" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="172" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30337" g_stop="30884" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="720" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="734"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E369498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29637" e_stop="29709"/>
          <exon e_start="29797" e_stop="29895"/>
          <exon e_start="30337" e_stop="30884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAATGTACATCTTTATCATTTGCATGATTTTGTTCCACTTTCTAGTGGATTTTTTATTAAAATAAAATTTTATCTGCTTTTTGCTACACAGAGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAGGTTAGTGAGGTTTTAAGAGTAATCAGTACACAGAAGTGAGTACATAAGAGTTTTGGAATGTTTCTGCTGTGATTGCATTGGGACTTCAATTATGATTGATCTGGACCAATCTTGCCTATTGTTGTAGTTGCGTACCACTTAAGGCATCTCTTTAAATATGTTGTTCCAAGTTCCTTCTTATATGGACCTGTTTGACTGGCAGGAGGTTGAAGAATATAATTTGACTAGTGTATTGTACTCGTAATAGTAGGAAATACATACATTAGTTATAGAAGAACTTAAACTGGGAAGAAGAGAACAATAGCCAGAATCTTGTAGTTTCTTTAGTGTGAAAAACATTTTGAGATACTGCAAAAAGGGCGCTACATAGTAGTCCTGAAGATAATATAGATTGTAGTTGTCACTTATTCTTAAGTCATCTTTCTTTTGCACATGGCACAGAGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTT</genome_strand>
        <mrna_strand>GTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT.......................................................................................AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246083" ref_strand="-" ref_description="SGN-E246083 [cLEF-40-G13]">
      <seq>atgtcgccacttaatctcaaggatctttgttggagatccggcacagaggatcacaatgcctgaaatcaggaatcatgtatggtttttgaagaatcttccagcggacttaatagacgataggatgattagtgatcagtttgaagaacccgatcaaccaatgcagagcattgatacgatcatgcaaataatctcagaggcaacagtaccaccaattggcttgtataacttggaaatgatggacgatgacatggatgacttggattcagagcctgatcttgatattgatagcagcggggagatcatatatgcaatgtgagtgcatgccaagcttgtgaaaaggaaggtgtatccacaatcttagaacatttctggacttgttggtgtgcaaggcttagagattgttgaagctcagtaacatgaaaatggggtatttacaatgtttgtaattagtcaagttcttatcctgaaaggggcttttagtctgcccatgaattatttcttctattaccataggaggaattggctgaaaaagtaatggagtttccatacttgagttcataatctctttataatgtcatacagtgttgttcttttgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="29550" stop="31188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29850" g_stop="29895" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30337" g_stop="30884" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="594" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="614"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E246083" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246083" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29850" e_stop="29895"/>
          <exon e_start="30337" e_stop="30884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAGGTTAGTGAGGTTTTAAGAGTAATCAGTACACAGAAGTGAGTACATAAGAGTTTTGGAATGTTTCTGCTGTGATTGCATTGGGACTTCAATTATGATTGATCTGGACCAATCTTGCCTATTGTTGTAGTTGCGTACCACTTAAGGCATCTCTTTAAATATGTTGTTCCAAGTTCCTTCTTATATGGACCTGTTTGACTGGCAGGAGGTTGAAGAATATAATTTGACTAGTGTATTGTACTCGTAATAGTAGGAAATACATACATTAGTTATAGAAGAACTTAAACTGGGAAGAAGAGAACAATAGCCAGAATCTTGTAGTTTCTTTAGTGTGAAAAACATTTTGAGATACTGCAAAAAGGGCGCTACATAGTAGTCCTGAAGATAATATAGATTGTAGTTGTCACTTATTCTTAAGTCATCTTTCTTTTGCACATGGCACAGAGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTT</genome_strand>
        <mrna_strand>ATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415927" ref_strand="+" ref_description="SGN-E415927 [STM-22-O7]">
      <seq>catttttttggagggaaactccattacttttcagccaattcctcctatgctgatagaagaaataattcatgggcatactaaaagccccttccaggataagaactagactaattacaaacattgtaaatacccccatgttcttgttactgagcattcaacaatctctaagctttgcacaccaacaagtccagaaatgttctcgtaagattgcagatacaacttcctttcacaagcatggcatgcactcacattgcatatatgatctccccgctgctatcaatatcaagatcaggctctgaatccaagtcatccatgtcatcatccatcatttccaagttatacaagccaattggtggtactgttgcctctgagattatttgcatgatcgtatcaatgctctgcattggttgatcggggtcttcaaactggtcactaatcatcttatcgtctattaagtccgctggaagattctttaaaaaccatacatgatttctgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="31139" stop="30053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30838" g_stop="30353" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="499" r_length="489" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E415927" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30838" e_stop="30353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAAACTCCATTACTTTTTCAGCCAATTCCTCCTATGGTAATAGAAGAAATAATTCATGGGCAGACTAAAAGCCCCTTTCAGGATAAGAACTTGACTAATTACAAACATTGTAAATA-CCCCATTTTCATGTTACTGAGC-TTCAACAATCTCTAAGCCTTGCACACCAACAAGTCCAGAAATG-T-TC-TAAGATTGTGGATACACCTTCCTTTTCACAAGCTTGGCATGCACTCACATTGCATATATGATCTCCCCGCTGCTATCAATATCAAGATCAGGCTCTGAATCCAAGTCATCCATGTCATCGTCCATCATTTCCAAGTTATACAAGCCAATTGGTGGTACTGTTGCCTCTGAGATTATTTGCATGATCGTATCAATGCTCTGCATTGGTTGATCGGGTTCTTCAAACTGATCACTAATCATCCTATCGTCTATTAAGTCCGCTGGAAGATTCTTCAAAAACCATACATGATTCCTGATTT</genome_strand>
        <mrna_strand>GAGGGAAACTCCATTACT-TTTCAGCCAATTCCTCCTATGCTGATAGAAGAAATAATTCATGGGCATACTAAAAGCCCCTTCCAGGATAAGAACTAGACTAATTACAAACATTGTAAATACCCCCATGTTCTTGTTACTGAGCATTCAACAATCTCTAAGCTTTGCACACCAACAAGTCCAGAAATGTTCTCGTAAGATTGCAGATACAACTTCC-TTTCACAAGCATGGCATGCACTCACATTGCATATATGATCTCCCCGCTGCTATCAATATCAAGATCAGGCTCTGAATCCAAGTCATCCATGTCATCATCCATCATTTCCAAGTTATACAAGCCAATTGGTGGTACTGTTGCCTCTGAGATTATTTGCATGATCGTATCAATGCTCTGCATTGGTTGATCGGGGTCTTCAAACTGGTCACTAATCATCTTATCGTCTATTAAGTCCGCTGGAAGATTCTTTAAAAACCATACATGATTTCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305433" ref_strand="-" ref_description="SGN-E305433 [cLEX-15-K10]">
      <seq>tgatattgatagcagcggggagatcatatatgcaatgtgagtgcatgccaagcttgtgaaaaggaaggtgtatccacaatcttagaacatttctggacttgttggtgtgcaaggcttagagattgttgaagctcagtaacatgaaaatggggtatttacaatgtttgtaattagtcaagttcttatcctgaaaggggcttttagtctgcccatgaattatttcttctattaccataggaggaattggctgaaaaagtaatggagtttccatacttgagttcataatctctttataatgtcatacagtgttgttcttttgtaactctgtactttcttatatgcgtttgtgtcaaaacaaattatgtgctctttctggtttttgtaagttaagatgcttaatagtccaaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="30267" stop="31270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30567" g_stop="30967" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="423"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E305433" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305433" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30567" e_stop="30967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</genome_strand>
        <mrna_strand>TGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431896" ref_strand="+" ref_description="SGN-E431896 [STM-56-M13]">
      <seq>atcctgctactcttttggatatgtgggtggaacgatacaatctagatgaagacggcatcactgcaatggccatcttccttgaactttcttcacaaaacctggttaatctcgcccttgcaagacaggatgcactagcagttcttggcttacataacttgcattacatacagcagcatgatatgctgagagaactggtcatccaccagtgtgatgagaagccggtagaagagagaatgagaatatatatcaacatcaaggggaatgactttcccgggtggtggtttgaacaaagacttaaaccacttcaagcggaggttttgtctattgtcacagatgaagatttctcctctaactgggatgatgtgcgatttcctaaagttgaagtacttgtgttgaactttgaaacaaggacatacaacttacccccttttatagggcagatgagccaattgaagacactggttgtgacaaacaatggtttcttcccagccaatttgaataactttcagctttgttctctgctgaatcttaagataatcaacctggaacgcatctctgttacatccattttcacagccaatctgcagctaccaaatttgcgcaaaatctccctgaacatgtgtgaaattggggaggcatttgagaactctgctgccaagatgccttacatgtggccaaaactcgttgagatgaatatcgagtactgcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="34138" stop="32384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33838" g_stop="33718" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33717" i_stop="33387" i_length="331">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33386" g_stop="33175" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="333" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33174" i_stop="33062" i_length="113">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.321" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33061" g_stop="32684" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="711" r_length="378" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E431896" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33838" e_stop="33718"/>
          <exon e_start="33386" e_stop="33175"/>
          <exon e_start="33061" e_stop="32684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTGCTGCTCTTTTGGATATGTGGGTGGAACGATACAATCTAGATGAAGATGGCATCACTGCAATGGCCATCTTCCTTGAACTTTCTTCACAAAACCTGGTTAATCTCGCCCTTGCAAGGTATAGCTGGCTTCAATTTTGTCTTGAAACTGTGTTATTTTTGCTACTTCATATCTAATGTGCTGAAGCTATGAGAATTATATTCCACCTTCAAAATTATTTTGGAGAAAATTATTACAGTAAATTTCATGAGATCGAATAATAGTAACTCATAGAGTTCCGCCAGTATAACATTACAGTGGCTGGCTTCGTTTTATCCTGGTTCCACCTTTTTGGAGTATACTCAACTTCTTCTGTGCCTTGGATTGTTGAACTTATCAAGTTAGCTGATATCCTTTAATAGGTTCCTACTTGTGTATCTGATTTGAACTTCATTCATGCTGATTCACAGACAGGATGCACGAGCAGTTCTTGGCTTACATAACTTGCATTACATACAGCAGCATGATATGCTGAGAGAACTGGTCATACACCAGTGTGATGAGAAGCCGGTAGAAGAGAGAATGAGAATATATATCAACATCAAGGGGAATGAATTTCCTAGGTGGTGGTTTGAACAAAGACTTCAACCACTTCAAGCGGAGGTTTTGTCTATTGTCACAGGTTTGTTATCCATCCCTTCTCTTCCTTTTCAGTCAAAATTTGAGATGTCTTCTACAAATTTGCTTCAGCTTTTCTCTGTTATTTAATTACCACATCCTGAATCCGAATTTCAGATGAAGATTTCTCCTGTAACTGGCATGGCGTGCAGTTTCCTAAAGTTGAAGTACTTGTGTTGAACTTTGAAACAAGGACCTACAAATTACCCCCTTTTATAGAGCAGATGAGCCAATTGAAGACACTGGTTCTGACAAACAATGGTTTCTTCCCAGCCAAGTTGAATAATTTTCAGCTTTGTTCTCTGCTCAATCTTAAGAGAATCAACCTGGAACGCATCTCTGTTACATCCATTATGTCAGCCAATCTGCAGCTACCAAATTTGCGCAAAATCTCCCTGAACATGTGTGAAATCAGGGAGGCATTTGAGAACTCTGCTGCCAAGATGTCTTATATGTGGCCAAAACTCGTTGAGATTAATATCGAGTACTGCAGCG</genome_strand>
        <mrna_strand>ATCCTGCTACTCTTTTGGATATGTGGGTGGAACGATACAATCTAGATGAAGACGGCATCACTGCAATGGCCATCTTCCTTGAACTTTCTTCACAAAACCTGGTTAATCTCGCCCTTGCAAG...........................................................................................................................................................................................................................................................................................................................................ACAGGATGCACTAGCAGTTCTTGGCTTACATAACTTGCATTACATACAGCAGCATGATATGCTGAGAGAACTGGTCATCCACCAGTGTGATGAGAAGCCGGTAGAAGAGAGAATGAGAATATATATCAACATCAAGGGGAATGACTTTCCCGGGTGGTGGTTTGAACAAAGACTTAAACCACTTCAAGCGGAGGTTTTGTCTATTGTCACAG.................................................................................................................ATGAAGATTTCTCCTCTAACTGGGATGATGTGCGATTTCCTAAAGTTGAAGTACTTGTGTTGAACTTTGAAACAAGGACATACAACTTACCCCCTTTTATAGGGCAGATGAGCCAATTGAAGACACTGGTTGTGACAAACAATGGTTTCTTCCCAGCCAATTTGAATAACTTTCAGCTTTGTTCTCTGCTGAATCTTAAGATAATCAACCTGGAACGCATCTCTGTTACATCCATTTTCACAGCCAATCTGCAGCTACCAAATTTGCGCAAAATCTCCCTGAACATGTGTGAAATTGGGGAGGCATTTGAGAACTCTGCTGCCAAGATGCCTTACATGTGGCCAAAACTCGTTGAGATGAATATCGAGTACTGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475878" ref_strand="+" ref_description="SGN-E475878 [cSTB-42-G16]">
      <seq>attttaagattttggtcacttcgagatctgtgttcccaaaatttgatacatataaattaaatcttttgagcgaggaggatgcaaaggatctcttctgcatttcagcttttaaagatggcagacctaatgtgcgacttgatcttgttcataaggtggtgagaagttgtggcggttttccactggctcttagagttgtaggccgttcattgtgtggcgagtttgaggtgacatgggttaacagagtaatgatgcagtctaaaaggcaaattctcttccctactgagaatgatctgcttcgttctttgcaagccagcattgatgccttggatgaaaaagctctttacagcagagaaacaactacattaagagactgctaccttgatttaggatcatttcctgaagaaatagacatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="34760" stop="33550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34460" g_stop="34309" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34308" i_stop="34101" i_length="208">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34100" g_stop="33851" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="402" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E475878" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34460" e_stop="34309"/>
          <exon e_start="34100" e_stop="33851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAGATTTTGGTCACTTCGAGATATGTATTCCCGAAATTTGATACATATAAATTAAAGCTTTTGAGCGAGGAGGACGCAAAGGATCTCTTCTGCATTTCAGCTTTTAAAGATGGCAGCCCTGATGTGCGGCTTAATCTTGTTCATAAGGTAAAAGGCTATCTTCGTTTACAAAGGTCTTTTGACTAATTCTTTAGTTATGAATACATGTGAAATCTATATGTAAAACACTATTGTGCATGTGCTAGAAATGTTAGAGAGTGAAAATGTATCTCTTCTAAATAATACAGTTCCCTAATTCATATAACTTTATAAATTTCTCTGCTTTGTGGATCTAAATGATGGCATACAATGGCAGGTGGTGAGAAGTTGTGGCGGTTTTCCACTGGCTCTTAGAGTTGTAGGTCGTTCATTGTGTGGCCAGTCTGAGGTGATATGGTTTAACAGAGTAATGATGCAGTCTAAAAGGCAAATTCTCTTCCCTACTGAGAATGATCTGCTTCGTTCTTTGCAAGCCAGCATTGATGCCTTGGATGAAAAAGTTCTTTACAGCAGAGAAACAACTACATTAAGAGACTGCTACCTGGATTTAGGATCATTTCCTGAAG</genome_strand>
        <mrna_strand>ATTTTAAGATTTTGGTCACTTCGAGATCTGTGTTCCCAAAATTTGATACATATAAATTAAATCTTTTGAGCGAGGAGGATGCAAAGGATCTCTTCTGCATTTCAGCTTTTAAAGATGGCAGACCTAATGTGCGACTTGATCTTGTTCATAAG................................................................................................................................................................................................................GTGGTGAGAAGTTGTGGCGGTTTTCCACTGGCTCTTAGAGTTGTAGGCCGTTCATTGTGTGGCGAGTTTGAGGTGACATGGGTTAACAGAGTAATGATGCAGTCTAAAAGGCAAATTCTCTTCCCTACTGAGAATGATCTGCTTCGTTCTTTGCAAGCCAGCATTGATGCCTTGGATGAAAAAGCTCTTTACAGCAGAGAAACAACTACATTAAGAGACTGCTACCTTGATTTAGGATCATTTCCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408290" ref_strand="+" ref_description="SGN-E408290 [PPI-10-N17]">
      <seq>caagtgctggttctttctgctcctcctggctgtggaaaaactactttggcagcaaagctttgtcaagaggatgatatcaaagccatatacagggacaacatcttttttgtcactgttaccaaaacaccaaacatcaaacgcattgttggggaaatctttgagaagaaaggctacagggtcccagagttcgctactaagcatgatgcaatctgccaactcaataacttccttgggagaattactcctcaaccaatattactggtgctggatgatgtttggtctgaatcagagttcatcgatcatcttaaattacagatacctgattttaagattttggtcacttcgagatttgtgttcccaagatttgatacatataaattaaagggtttgagcgaggaagatgcaaagcatctcttctgcacttcagcttttaaagatggcatccctgatgtgcgacttgatcttgttgataaggtggtgagaagttgtggcggttttccactggctcttagagttgtaggccgttcattgtgtggccagtctgaggtgacatggtttaacagagtaatgatgcagtcaaaaaggcaaattctcttccctactgagaattatctgcttcgttctttgcaagccagcattgatgccttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="35696" stop="33625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35396" g_stop="35315" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35314" i_stop="34704" i_length="611">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34703" g_stop="34309" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="474" r_length="392" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34308" i_stop="34101" i_length="208">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34100" g_stop="33925" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="650" r_length="176" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E408290" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35396" e_stop="35315"/>
          <exon e_start="34703" e_stop="34309"/>
          <exon e_start="34100" e_stop="33925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGCTGGTTCTTTCTGCTCCTCCTGGCTGTGGAAAAACTACTTTGGCAGCAAGGCTTTGTCAAGAGGATGATATCAAAGGTATTGTTTATTTATTGTTTGCCATATTAAATGTTAGTATCTTACACTGATATTGCTGTTAAGTTAGTTTGTAAGATGCATGCCTTTGTAACTTCAGTTAGCTAATTCTCTTGTTTGTCTTCGAATAACATGAATTTAAATGCTGCCTGGATTAACTTCCTTTTAACTTAATTGATTCTTACTATGTCGGTTTATCAGTTGAATTTTGATGAATGTGTTTTGGTTTTATGATTGCATAGGATGATAGGAACCAAAAACACTTCACACGAACATAAGGTTGTGTTTTCTTATTATGCAACAAAAACATAAATTGTGTTCTGGGTTGCGAATTAATGTATCTATAATACAGTTGTATAGCTTTTCCTTTTTCTCTGGTGTCACAATATGCTTTTGATGTGTGTGGAAGAAAGCCCTTCATACCTAAAAACTAGCTTGCTGACCCCATAAAAGGAGAAATATAGTAGATTCTTTTTTTGTGATTCCACTTATAGGCTATGCAGATAAATGAAATCACGGCAAGACTAGTTGTTATTAATGTTGTATCATGTTTTTATGTCATATTAAGCTTATTGCCGATTTTTAGCATATTTGATCTAATTGTCTCTTAACAGCCATATACAGGGACAACATCTTTTTTGTCACTGTTACCAAAACACCGAACATCAAACGCATTGTTGGGGAAATCTTTGAGAAGAAAGGCTTCAGGGTTCCAGAGTTTGCTAATGAGCATGATGCAATCTGCAAACTCAACAGCCTCCTTGGGGGAATCACTCCTCAACCAATATTACTGGTGCTGGATGATGTTTGGTCTGAATCAGAGTTCATCATCGATCATCTTAAATTACAGATATCTGATTTTAAGATTTTGGTCACTTCGAGATATGTATTCCCGAAATTTGATACATATAAATTAAAGCTTTTGAGCGAGGAGGACGCAAAGGATCTCTTCTGCATTTCAGCTTTTAAAGATGGCAGCCCTGATGTGCGGCTTAATCTTGTTCATAAGGTAAAAGGCTATCTTCGTTTACAAAGGTCTTTTGACTAATTCTTTAGTTATGAATACATGTGAAATCTATATGTAAAACACTATTGTGCATGTGCTAGAAATGTTAGAGAGTGAAAATGTATCTCTTCTAAATAATACAGTTCCCTAATTCATATAACTTTATAAATTTCTCTGCTTTGTGGATCTAAATGATGGCATACAATGGCAGGTGGTGAGAAGTTGTGGCGGTTTTCCACTGGCTCTTAGAGTTGTAGGTCGTTCATTGTGTGGCCAGTCTGAGGTGATATGGTTTAACAGAGTAATGATGCAGTCTAAAAGGCAAATTCTCTTCCCTACTGAGAATGATCTGCTTCGTTCTTTGCAAGCCAGCATTGATGCCTTGGA</genome_strand>
        <mrna_strand>CAAGTGCTGGTTCTTTCTGCTCCTCCTGGCTGTGGAAAAACTACTTTGGCAGCAAAGCTTTGTCAAGAGGATGATATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATATACAGGGACAACATCTTTTTTGTCACTGTTACCAAAACACCAAACATCAAACGCATTGTTGGGGAAATCTTTGAGAAGAAAGGCTACAGGGTCCCAGAGTTCGCTACTAAGCATGATGCAATCTGCCAACTCAATAACTTCCTTGGGAGAATTACTCCTCAACCAATATTACTGGTGCTGGATGATGTTTGGTCTGAATCAGAG-T--TCATCGATCATCTTAAATTACAGATACCTGATTTTAAGATTTTGGTCACTTCGAGATTTGTGTTCCCAAGATTTGATACATATAAATTAAAGGGTTTGAGCGAGGAAGATGCAAAGCATCTCTTCTGCACTTCAGCTTTTAAAGATGGCATCCCTGATGTGCGACTTGATCTTGTTGATAAG................................................................................................................................................................................................................GTGGTGAGAAGTTGTGGCGGTTTTCCACTGGCTCTTAGAGTTGTAGGCCGTTCATTGTGTGGCCAGTCTGAGGTGACATGGTTTAACAGAGTAATGATGCAGTCAAAAAGGCAAATTCTCTTCCCTACTGAGAATTATCTGCTTCGTTCTTTGCAAGCCAGCATTGATGCCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427096" ref_strand="+" ref_description="SGN-E427096 [STM-47-D16]">
      <seq>ctagaccttccccaaaataatccattttgcagtgttacgtagcaatggcagcagctctcttgggaggagctgctttgggtccagtattcgaccgacttctcaaagtagttgttgattttggcgtaaacattgccactttccgttccgaattcctaagcttgaaacagacattaatctacatcaaaccagtattcgatgacattgagaggctaagcaaggccctagacggccgagatgaagaaatagacatgtttaagaagcagttgatgaaaggtgaagacctagtcctcaagtgttccaagattaaaagctacgaccctttgaagtggaattactccagaaaactaacgaagttggaaaattcactaatgaaggtctgccagatagacggtatatttcagctgcttagggatagtaaatcgactcgggttaatgttattgaaaatcgcaacatattggaggagatccactcgatgttgaggaatgtttcattgacgagatccgggagtagtattgtatttancaattctagtggttcttcagggtggatgaatggttctagtcttgggttttcaggattgtctaatatgcctcaagtttctgattctatgggtgggatttgaagtcccacttcatgaatttgaaacagaattgaagctgcttcaggagaaagatcaagtggctggttctttctgctcctcctggctgtggaaaactactttggcagcaaagctttgtcaagaggatgatatcaaagccatatacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="36373" stop="35011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36073" g_stop="35315" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E427096" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36073" e_stop="35315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACTTCCCCCAAAATAATTCGTCTTGCAGTGTTACGTAGCAATGGCAGCAGCTCTCTTCGGAGGAGCTGCTTTGGGTCCAGTCTTCGACCAACTTCTCAAAGCAGTTATTGATTTTGGCGTAAACATTGCCACTTTCCGGTCCAAATTCCTCAGCTTGAAGCAGACATTGACCGACATCAAACCAGTATTCCATGACATTGAGAGGCTAAACGAGGCCCTAGACGGCCGTGATGAAGAAATAGACATGTTTAAGAAGCAGTTGATGAAAGGTGAAGAGCTAGTCCGCAAGTGTTCCAAGATTAAACGCTGCGACCCTTTGAAGAAGTGGAGTTACTCCAGGAAACTAACGAAGTTGGATAATTCACTAGTGAAGTTCTGCCAGATACACGGTTTAATTCAGGTGGTTAGGGATAGTAAACAGATTCTGGTTAAGGTTAATGAAAATGGCAAGAAATTGGAGGAGATCCACTCGATGATGAGAGATGTTTCATTGACGAGATCCGGGAGTAGTATTGGATTTACAAATTCTAGTGCTTCTTCAGGGTGGATGAATGGTTCTAGTTTTGGGTTTTCAGGATCGTCTGATGTGCCTCAAGTTTCTGATTCTAT-GGTTGGATTTGATGTCCCACTTCATGAA-CTGAAACAGAAATTGAAGGTGCTTCAGGAGAAAGATCAAGT-GCTGGTTCTTTCTGCTCCTCCTGGCTGTGGAAAAACTACTTTGGCAGCAAGGCTTTGTCAAGAGGATGATATCAAAG</genome_strand>
        <mrna_strand>CTAGACCTTCCCCAAAATAATCCATTTTGCAGTGTTACGTAGCAATGGCAGCAGCTCTCTTGGGAGGAGCTGCTTTGGGTCCAGTATTCGACCGACTTCTCAAAGTAGTTGTTGATTTTGGCGTAAACATTGCCACTTTCCGTTCCGAATTCCTAAGCTTGAAACAGACATTAATCTACATCAAACCAGTATTCGATGACATTGAGAGGCTAAGCAAGGCCCTAGACGGCCGAGATGAAGAAATAGACATGTTTAAGAAGCAGTTGATGAAAGGTGAAGACCTAGTCCTCAAGTGTTCCAAGATTAAAAGCTACGACCCTTT---GAAGTGGAATTACTCCAGAAAACTAACGAAGTTGGAAAATTCACTAATGAAGGTCTGCCAGATAGACGGTATATTTCAGCTGCTTAGGGATAGTAAATCGACTCGGGTTAATGTTATTGAAAATCGCAACATATTGGAGGAGATCCACTCGATGTTGAGGAATGTTTCATTGACGAGATCCGGGAGTAGTATTGTATTTANCAATTCTAGTGGTTCTTCAGGGTGGATGAATGGTTCTAGTCTTGGGTTTTCAGGATTGTCTAATATGCCTCAAGTTTCTGATTCTATGGGTGGGATTTGAAGTCCCACTTCATGAATTTGAAACAG-AATTGAAGCTGCTTCAGGAGAAAGATCAAGTGGCTGGTTCTTTCTGCTCCTCCTGGCTGTGG-AAAACTACTTTGGCAGCAAAGCTTTGTCAAGAGGATGATATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736024" ref_strand="+" ref_description="SGN-E736024 [LC04AC03]">
      <seq>cggttcgaggacgacctactgctatacttcactcgacttcccccaaaataattcgtcttgcagtgttacgtagcaatggcagcagctctcttcggaggagctgctttgggtccagtcttcgaccaacttctcaaagcagttattgattttggcgtaaacattgccactttccggtccaaattcctcagcttgaagcagacattgaccgacatcaaaccagtattccatgacattgagaggctaaacgaggccctagacggccgtgatgaagaaatagacatgtttaagaagcagttgatgaaaggtgaagagctagtccgcaagtgttccaagattaaacgctgcgaccctttgaagaagtggagttactccaggaaactaacgaagttggataattcactagtgaagttctgccagatacacggtttaattcaggtggttagggatagtaaacagattctggttaaggttcatgaaaatggcaagaaattggaggagatccactcgatgatgagagatgtttcattgacgagatccgggagtagtattggatttacaaattctagtgcttcttcagggtggatgaatggttctagttttgggttttcaggatcgtctgatgtgcctcaagtttctgattctatggttggatttgatgtcccacttcatgaactgaaacagaaattgaaggtgcttcaggagaaagatccagtgctggttctttctgctcctcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="36400" stop="35069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36094" g_stop="35369" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="736" r_length="726" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E736024" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36094" e_stop="35369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACCTACTGCTATACTTCACTCGACTTCCCCCAAAATAATTCGTCTTGCAGTGTTACGTAGCAATGGCAGCAGCTCTCTTCGGAGGAGCTGCTTTGGGTCCAGTCTTCGACCAACTTCTCAAAGCAGTTATTGATTTTGGCGTAAACATTGCCACTTTCCGGTCCAAATTCCTCAGCTTGAAGCAGACATTGACCGACATCAAACCAGTATTCCATGACATTGAGAGGCTAAACGAGGCCCTAGACGGCCGTGATGAAGAAATAGACATGTTTAAGAAGCAGTTGATGAAAGGTGAAGAGCTAGTCCGCAAGTGTTCCAAGATTAAACGCTGCGACCCTTTGAAGAAGTGGAGTTACTCCAGGAAACTAACGAAGTTGGATAATTCACTAGTGAAGTTCTGCCAGATACACGGTTTAATTCAGGTGGTTAGGGATAGTAAACAGATTCTGGTTAAGGTTAATGAAAATGGCAAGAAATTGGAGGAGATCCACTCGATGATGAGAGATGTTTCATTGACGAGATCCGGGAGTAGTATTGGATTTACAAATTCTAGTGCTTCTTCAGGGTGGATGAATGGTTCTAGTTTTGGGTTTTCAGGATCGTCTGATGTGCCTCAAGTTTCTGATTCTATGGTTGGATTTGATGTCCCACTTCATGAACTGAAACAGAAATTGAAGGTGCTTCAGGAGAAAGATCAAGTGCTGGTTCTTTCTGCTCCTCCTG</genome_strand>
        <mrna_strand>ACGACCTACTGCTATACTTCACTCGACTTCCCCCAAAATAATTCGTCTTGCAGTGTTACGTAGCAATGGCAGCAGCTCTCTTCGGAGGAGCTGCTTTGGGTCCAGTCTTCGACCAACTTCTCAAAGCAGTTATTGATTTTGGCGTAAACATTGCCACTTTCCGGTCCAAATTCCTCAGCTTGAAGCAGACATTGACCGACATCAAACCAGTATTCCATGACATTGAGAGGCTAAACGAGGCCCTAGACGGCCGTGATGAAGAAATAGACATGTTTAAGAAGCAGTTGATGAAAGGTGAAGAGCTAGTCCGCAAGTGTTCCAAGATTAAACGCTGCGACCCTTTGAAGAAGTGGAGTTACTCCAGGAAACTAACGAAGTTGGATAATTCACTAGTGAAGTTCTGCCAGATACACGGTTTAATTCAGGTGGTTAGGGATAGTAAACAGATTCTGGTTAAGGTTCATGAAAATGGCAAGAAATTGGAGGAGATCCACTCGATGATGAGAGATGTTTCATTGACGAGATCCGGGAGTAGTATTGGATTTACAAATTCTAGTGCTTCTTCAGGGTGGATGAATGGTTCTAGTTTTGGGTTTTCAGGATCGTCTGATGTGCCTCAAGTTTCTGATTCTATGGTTGGATTTGATGTCCCACTTCATGAACTGAAACAGAAATTGAAGGTGCTTCAGGAGAAAGATCCAGTGCTGGTTCTTTCTGCTCCTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485125" ref_strand="+" ref_description="SGN-E485125 [cSTE-16-L15]">
      <seq>ctagaccttccccaaaataatccattttgcagtgttacgtagcaatggcagcagctctcttgggaggagctgctttgggtccagtattcgaccgacttctcaaagtagttgttgattttggcgtaaacattgccactttccgttccgaattcctaagcttgaaacagacattaatctacatcaaaccagtattcgatgacattgagaggctaagcaaggccctagacggccgagatgaagaaatagacatgtttaagaagcagttgatgaaaggtgaagacctagtcctcaagtgttccaagattaaaagctacgaccctttgaagtggaattactccagaaaactaacgaagttggaaaattcactaatgaaggtctgccagatagacggtatatttcagctgcttagggatagtaaatcgactcgggttaatgttattgaaaatcgcaacatattggaggagatccactcgatgttgaggaatgtttcattgacgagatccgggagtagtattgtatttacaaattctagtggttcttcagggtggatgaatggttctagtcttgggttttcaggattgtctaatatgcctcaagtttctgattctatggttggatttgaagtcccacttcatgaattgaaacagaaattgaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="36373" stop="35111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36073" g_stop="35411" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E485125" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36073" e_stop="35411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACTTCCCCCAAAATAATTCGTCTTGCAGTGTTACGTAGCAATGGCAGCAGCTCTCTTCGGAGGAGCTGCTTTGGGTCCAGTCTTCGACCAACTTCTCAAAGCAGTTATTGATTTTGGCGTAAACATTGCCACTTTCCGGTCCAAATTCCTCAGCTTGAAGCAGACATTGACCGACATCAAACCAGTATTCCATGACATTGAGAGGCTAAACGAGGCCCTAGACGGCCGTGATGAAGAAATAGACATGTTTAAGAAGCAGTTGATGAAAGGTGAAGAGCTAGTCCGCAAGTGTTCCAAGATTAAACGCTGCGACCCTTTGAAGAAGTGGAGTTACTCCAGGAAACTAACGAAGTTGGATAATTCACTAGTGAAGTTCTGCCAGATACACGGTTTAATTCAGGTGGTTAGGGATAGTAAACAGATTCTGGTTAAGGTTAATGAAAATGGCAAGAAATTGGAGGAGATCCACTCGATGATGAGAGATGTTTCATTGACGAGATCCGGGAGTAGTATTGGATTTACAAATTCTAGTGCTTCTTCAGGGTGGATGAATGGTTCTAGTTTTGGGTTTTCAGGATCGTCTGATGTGCCTCAAGTTTCTGATTCTATGGTTGGATTTGATGTCCCACTTCATGAACTGAAACAGAAATTGAAGGTGC</genome_strand>
        <mrna_strand>CTAGACCTTCCCCAAAATAATCCATTTTGCAGTGTTACGTAGCAATGGCAGCAGCTCTCTTGGGAGGAGCTGCTTTGGGTCCAGTATTCGACCGACTTCTCAAAGTAGTTGTTGATTTTGGCGTAAACATTGCCACTTTCCGTTCCGAATTCCTAAGCTTGAAACAGACATTAATCTACATCAAACCAGTATTCGATGACATTGAGAGGCTAAGCAAGGCCCTAGACGGCCGAGATGAAGAAATAGACATGTTTAAGAAGCAGTTGATGAAAGGTGAAGACCTAGTCCTCAAGTGTTCCAAGATTAAAAGCTACGACCCTTT---GAAGTGGAATTACTCCAGAAAACTAACGAAGTTGGAAAATTCACTAATGAAGGTCTGCCAGATAGACGGTATATTTCAGCTGCTTAGGGATAGTAAATCGACTCGGGTTAATGTTATTGAAAATCGCAACATATTGGAGGAGATCCACTCGATGTTGAGGAATGTTTCATTGACGAGATCCGGGAGTAGTATTGTATTTACAAATTCTAGTGGTTCTTCAGGGTGGATGAATGGTTCTAGTCTTGGGTTTTCAGGATTGTCTAATATGCCTCAAGTTTCTGATTCTATGGTTGGATTTGAAGTCCCACTTCATGAATTGAAACAGAAATTGAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="40821" stop="39414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40521" g_stop="39714" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40521" e_stop="39714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTAGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="41480" stop="40232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41180" g_stop="40532" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41180" e_stop="40532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCACTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="41479" stop="40495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41179" g_stop="40795" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41179" e_stop="40795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCACTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243235" ref_strand="+" ref_description="SGN-E243235 [cLEE-2-M2]">
      <seq>gaggttcgtctttgctgggactgtagcttctttgggattgctttctgttgtgggaagttacttagatttacttacgcttctctacattggtattgtgatgggactgactgtaccggatgtatatgtgaaatatgaagacagaattaaggacttggggcagcgagcaagggtccgatgccacatatataacagcgcggaaactgaaagatgtcgcatgtattacagctccatatcggagagggtcgagaaaatgaatagcaagttgcagcagaagaaaaagaaaaaaaatgagtagtccgtatatatttgtagttagtttttatatttttagttagtttttacttggttattagtagtaatatatttagttagttttttacttggttattagtagtaataacaatgtttttacgaaagcatcaagagattaaataggattgaagtattcgtcaactaactcttggtaaactagattatgcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="44466" stop="43285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44166" g_stop="44078" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44077" i_stop="43978" i_length="100">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43977" g_stop="43585" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="482" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E243235" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44166" e_stop="44078"/>
          <exon e_start="43977" e_stop="43585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTGGTAATTACAATACTACTTATATGATTAACTAGTAAGTAATTTATTTACCTACTGATGTTTTAGTACTATACTATATATGTGTATATACCTGGTAATGCAGGTATTGTGATGGGACTGACTGTACCGGTTGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGCAACTGAGAGATGTCGCATGTATTACAGCTCCATAGCGGAGAGGGTCGAGAAAATGAAGAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATATTTGTAGTTAGTTTTTATATTTTTAGTTAGTTTTTACTTGGTTATTAGTAGTAATATATTTAGTTAGTTTTTTACTTGGTTATTAGTAGTAATAACAATGTTTTTACGAAAGCATCAAGAGATTAAATAGGATTGAAGTATTCGTCAACTAACTCTTGGTAAACTAGATTATGCGCG</genome_strand>
        <mrna_strand>GAGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTG....................................................................................................GTATTGTGATGGGACTGACTGTACCGGATGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGAAACTGAAAGATGTCGCATGTATTACAGCTCCATATCGGAGAGGGTCGAGAAAATGAATAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATATTTGTAGTTAGTTTTTATATTTTTAGTTAGTTTTTACTTGGTTATTAGTAGTAATATATTTAGTTAGTTTTTTACTTGGTTATTAGTAGTAATAACAATGTTTTTACGAAAGCATCAAGAGATTAAATAGGATTGAAGTATTCGTCAACTAACTCTTGGTAAACTAGATTATGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706026" ref_strand="+" ref_description="SGN-E706026 [FA28DC01]">
      <seq>cgcttcagtatgcagcagcagactactacttcaacagattctccaactcctcaacttgaaaaccattcagattcagaatccaacctgcacacttcaacagactctccaacacctgatgtaaatgttggcaaaactagtacagatatactcagagatgtaattttatggaagaggaagagttttactgttgctgcgctattagcagctacagcgatatggctggcacttgaagtctatggattgacctttataacgctgttttcatggatcgccatgttcctcatcgtttccacctttttatggggcaacatacatatgctcttggggaaagagcccctggacatgtcaaggatgtacataagcgatgaatcagttgtggaagcaggaatcaaatttcgtgaatcagttgagaatagcctgaggtttctgtttaacgtgagtaccaagagagagtggttcgtctttgctgggactgtagcttctttgggattgctttctgttgtgggaagttacttagatttacttacgcttctctacattggtattgtgatgggactgactgtaccggttgtatatgtgaaatatgaagacagaattaaggacttggggcagcgagcaagggtccgatgccacatatataacagcgcggcaactgagagatgtcgcatgtattacagctccatagcggagagggtcgagaaaatgaagagcaagttgcagcagaagaaaaagaaaaaaaatgagtagtccgtatatatttgtagttagtttttatatttttagttagtttttacttggttattagtagtaatatatttagttagttttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="46192" stop="43386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46002" g_stop="46002" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46001" i_stop="45894" i_length="108">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.324" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45893" g_stop="45819" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="76" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45818" i_stop="45736" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45735" g_stop="45670" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="142" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45669" i_stop="45323" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45322" g_stop="45136" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="329" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45135" i_stop="44290" i_length="846">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44289" g_stop="44078" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="541" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44077" i_stop="43978" i_length="100">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43977" g_stop="43686" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="833" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E706026" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46002" e_stop="46002"/>
          <exon e_start="45893" e_stop="45819"/>
          <exon e_start="45735" e_stop="45670"/>
          <exon e_start="45322" e_stop="45136"/>
          <exon e_start="44289" e_stop="44078"/>
          <exon e_start="43977" e_stop="43686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTCCTTCACTTGAGCGCCATCTGTTATGTGTTTATCTCCATTCCCCCGACTCTTTAAAAATCAACCTTCACATTTTTCCAACAACAATTTGCTTTGGTGAATCCAGCCTTCAGTATGCAGCAGCAGACTACTACTTCAACAGATTCTCCAACTCCTCAACTTGAAAACCATTCAGATTCAGGTTAATAATTCCACAGATTTCCTAATTCTTTTAATTGTGCCTTTTTGTCTAATCTCTTCTTCTTTTTAATCATTTCTTTGCAGAATCCAACCTGCACACTTCAACAGACTCTCCAACACCTGATGTAAATGTTGGCAAAACTAGTACAGGTTTATAGTCCCATCACTTCATATTTCCTGTGTAAAATTGGTATTTTAATGTGAGATTTCAACTAAATCTCTTTTTATTAAGCTTTAATTAGCATTTTATGTAACTAAATCCTAATATAACTTAATAATTTCTGGATTCTTGGACAAAGAAGCATCAATGATAAGTTAGGTTCTGAATTCAATTTTTGAACCTATTTAATGAATTGTCGCGCAGCATATTTATGTTTCGGGGCCAAAGTTACTACGCCGAAAACATATACTAAAGCCTGCCTCCGACATTTGTCCTTCACTGCTAGTCTTGTTGCCTTCACCTTAAGATGAATTGTTACATATTTATATATTTTCAGATATACTCAGAGATGTAATTTTATGGAAGAGGAAGAGTTTTACTGTTGCTGCGCTATTAGCAGCTACAGCGATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAAGTAAGCTTTCTTTATTTTCTCTCTTTAGCATAAATGCTGTATGTTATGTGGAGTTGGTAGCAAGTTAAACTTTTTTCTCCATGATAATTTATTTTTTGGTTTTTCATCTGGTGTCCAACATGGGAGTTTTAAAGCCTTTTCTAACGAAGGTGAACTCATATCCAAGGGGATCGAATTCAAGACGACTTGGTTTGTTCGGTTCGCTATGATACAAATTAATAGGACTGCAATACTACTACTCTTTGGTAACAAAAATAAAATGACAAACTCACCCACTCTAAACAAACATAAGTAAAGTCAAAAAATTGTTTTACCATATTAAAATTATTGAACTAACACTGTTAGGATCGAATTTCCATACACATTTGATGAATGAAGAATATAAGAACTTTCTATTCGAGATATATGAGAGATCTAAGAGACAAAGAGAGAAATCAATAGTTTGTGGTAACACACCGTATGAACAGTTACAGAGAATAAATGAAGAATGAACAGTACATCAAATATTAATCCGACTTCCCAACCTAACGAACTAACAAACACAACTTTACCTCGATTAGCTAATGGGTGTAGATCATTCGTCTGTATAGGTGATTGCGGCAAATTCTGTTGATGGGATGAAATATGATTTTGTGACATTTGTTCAGGGGCGAAGTGCAGTGCTGTATTTTCAGTATCATCTGTCATTGTGAAACTAAGGCATCATTAGGCCTTAGCGCTATGTTAACATTCCCAAAGAGAGTCTCTTATCATTTTTATTCTCCAATGCAGTTGAATGAATCGAGAAGACTGTTTTTTGCCTCTTATATGAACATCAGCTAATAATGTGGTGATACATTTTTGCAGAGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTGGTAATTACAATACTACTTATATGATTAACTAGTAAGTAATTTATTTACCTACTGATGTTTTAGTACTATACTATATATGTGTATATACCTGGTAATGCAGGTATTGTGATGGGACTGACTGTACCGGTTGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGCAACTGAGAGATGTCGCATGTATTACAGCTCCATAGCGGAGAGGGTCGAGAAAATGAAGAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATATTTGTAGTTAGTTTTTATATTTTTAGTTAGTTTTTACTTGGTTATTAGTAGTAATATATTTAGTTAGTTTTTTACT</genome_strand>
        <mrna_strand>C............................................................................................................GCTTCAGTATGCAGCAGCAGACTACTACTTCAACAGATTCTCCAACTCCTCAACTTGAAAACCATTCAGATTCAG...................................................................................AATCCAACCTGCACACTTCAACAGACTCTCCAACACCTGATGTAAATGTTGGCAAAACTAGTACAG...........................................................................................................................................................................................................................................................................................................................................................ATATACTCAGAGATGTAATTTTATGGAAGAGGAAGAGTTTTACTGTTGCTGCGCTATTAGCAGCTACAGCGATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTG....................................................................................................GTATTGTGATGGGACTGACTGTACCGGTTGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGCAACTGAGAGATGTCGCATGTATTACAGCTCCATAGCGGAGAGGGTCGAGAAAATGAAGAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATATTTGTAGTTAGTTTTTATATTTTTAGTTAGTTTTTACTTGGTTATTAGTAGTAATATATTTAGTTAGTTTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554254" ref_strand="+" ref_description="SGN-E554254 [cTSC-3-L18]">
      <seq>tgaatccagccttcagtatgcagcagcagactactacttcaacagattctccaactcctcaacttgaaaaccattcagattcagaatccaacctgcacacttcaacagactctccaacacctgatgtaaatgttggcaaaactagtacagatatactcagagatgtaattttatggaagaggaagagttttactgttgctgcgctattagcagctacagcgatatggctggcacttgaagtctatggattgacctttataacgctgttttcatggatcgccatgttcctcatcgtttccacctttttatggggcaacatacatatgctcttggggaaagagcccctggacatgtcaaggatgtacataagcgatgaatcagttgtggaagcaggaatcaaatttcgtgaatcagttgagaatagcctgaggtttctgtttaacgtgagtaccaagagagagtggttcgtctttgctgggactgtagcttctttgggattgctttctgttgtgggaagttacttagatttacttacgcttctctacattggtattgtgatgggactgactgtaccggttgtatatgtgaaatatgaagacagaattaaggacttggggcagcgagcaagggtccgatgccacatatataacagcgcggcaactgagagatgtcgcatgtattacagctccataacggagagggtcgagaaaatgaagagcaagttgcagcagaagaaaaagaaaaaaaatgagtagtccgtatatattttgtagttaattttttatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="46202" stop="43440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45902" g_stop="45819" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45818" i_stop="45736" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45735" g_stop="45670" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="150" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45669" i_stop="45323" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45322" g_stop="45136" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="337" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="44290" i_length="846">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44289" g_stop="44078" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="549" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44077" i_stop="43978" i_length="100">
            <donor d_prob="0.656" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43977" g_stop="43738" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="789" r_length="240" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E554254" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45902" e_stop="45819"/>
          <exon e_start="45735" e_stop="45670"/>
          <exon e_start="45322" e_stop="45136"/>
          <exon e_start="44289" e_stop="44078"/>
          <exon e_start="43977" e_stop="43738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCAGCCTTCAGTATGCAGCAGCAGACTACTACTTCAACAGATTCTCCAACTCCTCAACTTGAAAACCATTCAGATTCAGGTTAATAATTCCACAGATTTCCTAATTCTTTTAATTGTGCCTTTTTGTCTAATCTCTTCTTCTTTTTAATCATTTCTTTGCAGAATCCAACCTGCACACTTCAACAGACTCTCCAACACCTGATGTAAATGTTGGCAAAACTAGTACAGGTTTATAGTCCCATCACTTCATATTTCCTGTGTAAAATTGGTATTTTAATGTGAGATTTCAACTAAATCTCTTTTTATTAAGCTTTAATTAGCATTTTATGTAACTAAATCCTAATATAACTTAATAATTTCTGGATTCTTGGACAAAGAAGCATCAATGATAAGTTAGGTTCTGAATTCAATTTTTGAACCTATTTAATGAATTGTCGCGCAGCATATTTATGTTTCGGGGCCAAAGTTACTACGCCGAAAACATATACTAAAGCCTGCCTCCGACATTTGTCCTTCACTGCTAGTCTTGTTGCCTTCACCTTAAGATGAATTGTTACATATTTATATATTTTCAGATATACTCAGAGATGTAATTTTATGGAAGAGGAAGAGTTTTACTGTTGCTGCGCTATTAGCAGCTACAGCGATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAAGTAAGCTTTCTTTATTTTCTCTCTTTAGCATAAATGCTGTATGTTATGTGGAGTTGGTAGCAAGTTAAACTTTTTTCTCCATGATAATTTATTTTTTGGTTTTTCATCTGGTGTCCAACATGGGAGTTTTAAAGCCTTTTCTAACGAAGGTGAACTCATATCCAAGGGGATCGAATTCAAGACGACTTGGTTTGTTCGGTTCGCTATGATACAAATTAATAGGACTGCAATACTACTACTCTTTGGTAACAAAAATAAAATGACAAACTCACCCACTCTAAACAAACATAAGTAAAGTCAAAAAATTGTTTTACCATATTAAAATTATTGAACTAACACTGTTAGGATCGAATTTCCATACACATTTGATGAATGAAGAATATAAGAACTTTCTATTCGAGATATATGAGAGATCTAAGAGACAAAGAGAGAAATCAATAGTTTGTGGTAACACACCGTATGAACAGTTACAGAGAATAAATGAAGAATGAACAGTACATCAAATATTAATCCGACTTCCCAACCTAACGAACTAACAAACACAACTTTACCTCGATTAGCTAATGGGTGTAGATCATTCGTCTGTATAGGTGATTGCGGCAAATTCTGTTGATGGGATGAAATATGATTTTGTGACATTTGTTCAGGGGCGAAGTGCAGTGCTGTATTTTCAGTATCATCTGTCATTGTGAAACTAAGGCATCATTAGGCCTTAGCGCTATGTTAACATTCCCAAAGAGAGTCTCTTATCATTTTTATTCTCCAATGCAGTTGAATGAATCGAGAAGACTGTTTTTTGCCTCTTATATGAACATCAGCTAATAATGTGGTGATACATTTTTGCAGAGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTGGTAATTACAATACTACTTATATGATTAACTAGTAAGTAATTTATTTACCTACTGATGTTTTAGTACTATACTATATATGTGTATATACCTGGTAATGCAGGTATTGTGATGGGACTGACTGTACCGGTTGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGCAACTGAGAGATGTCGCATGTATTACAGCTCCATAGCGGAGAGGGTCGAGAAAATGAAGAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATA-TTTGTAGTTAGTTTTTATATTTTT</genome_strand>
        <mrna_strand>TGAATCCAGCCTTCAGTATGCAGCAGCAGACTACTACTTCAACAGATTCTCCAACTCCTCAACTTGAAAACCATTCAGATTCAG...................................................................................AATCCAACCTGCACACTTCAACAGACTCTCCAACACCTGATGTAAATGTTGGCAAAACTAGTACAG...........................................................................................................................................................................................................................................................................................................................................................ATATACTCAGAGATGTAATTTTATGGAAGAGGAAGAGTTTTACTGTTGCTGCGCTATTAGCAGCTACAGCGATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTG....................................................................................................GTATTGTGATGGGACTGACTGTACCGGTTGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGCAACTGAGAGATGTCGCATGTATTACAGCTCCATAACGGAGAGGGTCGAGAAAATGAAGAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATATTTTGTAGTTAATTTTT-TATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244045" ref_strand="+" ref_description="SGN-E244045 [cLEE-1-H5]">
      <seq>gatatggctggcacttgaagtctatggattgacctttataacgctgttttcatggatcgccatgttcctcatcgtttccacctttttatggggcaacatacatatgctcttggggaaagagcccctggacatgtcaaggatgtacataagcgatgaatcagttgtggaagcaggaatcaaatttcgtgaatcagttgagaatagcctgaggtttctgtttaacgtgagtaccaagagagagtggttcgtctttgctgggactgtagcttctttgggattgctttctgttgtgggaagttacttagatttacttacgcttctctacattggtaattacaatactacttatatgattaactagtaagtaatttatttacctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="45552" stop="43727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45252" g_stop="45136" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45135" i_stop="44290" i_length="846">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44289" g_stop="44012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="395" r_length="278" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E244045" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45252" e_stop="45136"/>
          <exon e_start="44289" e_stop="44012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAAGTAAGCTTTCTTTATTTTCTCTCTTTAGCATAAATGCTGTATGTTATGTGGAGTTGGTAGCAAGTTAAACTTTTTTCTCCATGATAATTTATTTTTTGGTTTTTCATCTGGTGTCCAACATGGGAGTTTTAAAGCCTTTTCTAACGAAGGTGAACTCATATCCAAGGGGATCGAATTCAAGACGACTTGGTTTGTTCGGTTCGCTATGATACAAATTAATAGGACTGCAATACTACTACTCTTTGGTAACAAAAATAAAATGACAAACTCACCCACTCTAAACAAACATAAGTAAAGTCAAAAAATTGTTTTACCATATTAAAATTATTGAACTAACACTGTTAGGATCGAATTTCCATACACATTTGATGAATGAAGAATATAAGAACTTTCTATTCGAGATATATGAGAGATCTAAGAGACAAAGAGAGAAATCAATAGTTTGTGGTAACACACCGTATGAACAGTTACAGAGAATAAATGAAGAATGAACAGTACATCAAATATTAATCCGACTTCCCAACCTAACGAACTAACAAACACAACTTTACCTCGATTAGCTAATGGGTGTAGATCATTCGTCTGTATAGGTGATTGCGGCAAATTCTGTTGATGGGATGAAATATGATTTTGTGACATTTGTTCAGGGGCGAAGTGCAGTGCTGTATTTTCAGTATCATCTGTCATTGTGAAACTAAGGCATCATTAGGCCTTAGCGCTATGTTAACATTCCCAAAGAGAGTCTCTTATCATTTTTATTCTCCAATGCAGTTGAATGAATCGAGAAGACTGTTTTTTGCCTCTTATATGAACATCAGCTAATAATGTGGTGATACATTTTTGCAGAGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTGGTAATTACAATACTACTTATATGATTAACTAGTAAGTAATTTATTTACCTACTGATGTTTTAGTAC</genome_strand>
        <mrna_strand>GATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTGGTAATTACAATACTACTTATATGATTAACTAGTAAGTAATTTATTTACCTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265855" ref_strand="+" ref_description="SGN-E265855 [cLEI-11-O2]">
      <seq>aatactactctaatttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52127" stop="53746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52427" g_stop="52669" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="353" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53446" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="612" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E265855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52427" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAG</genome_strand>
        <mrna_strand>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209595" ref_strand="+" ref_description="SGN-E209595 [cLEC-54-M7]">
      <seq>aatactactctaatttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52127" stop="53515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52427" g_stop="52669" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="353" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53215" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="381" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E209595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52427" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCT</genome_strand>
        <mrna_strand>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355896" ref_strand="+" ref_description="SGN-E355896 [cLHT-12-H4]">
      <seq>tatactctatttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttaacaactattctttaagcattgctccaatggggaatgttgcactttttcatttgatatgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggacaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaattgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgctggaggtttcggagcacttaacgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52129" stop="53672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52429" g_stop="52669" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="349" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53372" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="534" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E355896" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52429" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTT-ACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATG</genome_strand>
        <mrna_strand>TA-TACTCT-ATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTAACAACTA-TTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATATGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGACAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGCTGGAGGTTTCGGAGCACTTAACGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355816" ref_strand="+" ref_description="SGN-E355816 [cLHT-12-H14]">
      <seq>actctatttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttaacaactattctttaagcattgctccaatggggaatgttgcactttatcatttgatatgtggaattttcattttttggagtgtttctctggtgaaagcaaaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggcgttcctcaacaggtgatcctcattaatggacaatttcctggaccaagacttgaccttgttacacatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgtggacatggagtggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaattgtcccattcctattaatgcaaattacacttacaagttccaaacaatagaccagattgcaagttacacatattttccttcaactcaattgcatagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52133" stop="53641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52433" g_stop="52669" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="346" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53341" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="500" r_length="154" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E355816" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52433" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTT-ACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCT</genome_strand>
        <mrna_strand>ACTCT-ATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTAACAACTA-TTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTATCATTTGATATGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAAAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGCGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGACAATTTCCTGGACCAAGACTTGACCTTGTTACACATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTGGACATG.............................................................................................................................................................................................................................................................................................................................GAGTGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATTAATGCAAATTACACTTACAAGTTCCAAACAATAGACCAGATTGCAAGTTACACATATTTTCCTTCAACTCAATTGCATAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206347" ref_strand="+" ref_description="SGN-E206347 [cLEC-23-D9]">
      <seq>ggctaatttatgtctaatcctcactagatctatcatacagttcttcattcattgtttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52136" stop="53635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52434" g_stop="52669" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="346" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53335" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="494" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E206347" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52434" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCAT</genome_strand>
        <mrna_strand>GGCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTGTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269988" ref_strand="+" ref_description="SGN-E269988 [cLEM-7-N9]">
      <seq>taatttatgtctaatcctcactagatctatcataccagttcttcattcattctgtctatttttaccaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52137" stop="53635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52437" g_stop="52669" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="345" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53335" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="493" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E269988" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52437" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTATGTCTAATCCTCACTAGATCTATCATA-CAGTTCTTCATTCATTCTTTCTATTTTTA-CAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCAT</genome_strand>
        <mrna_strand>TAATTTATGTCTAATCCTCACTAGATCTATCATACCAGTTCTTCATTCATTCTGTCTATTTTTACCAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235999" ref_strand="+" ref_description="SGN-E235999 [cLED-16-I2]">
      <seq>taatttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52137" stop="53555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52437" g_stop="52669" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="343" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53255" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="411" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E235999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52437" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTA</genome_strand>
        <mrna_strand>TAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209384" ref_strand="+" ref_description="SGN-E209384 [cLEC-53-I20]">
      <seq>atttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52139" stop="53633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52439" g_stop="52669" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="341" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53333" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="487" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E209384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52439" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGC</genome_strand>
        <mrna_strand>ATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317293" ref_strand="+" ref_description="SGN-E317293 [cTOA-28-F22]">
      <seq>tttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggtcattctcaaaatttatcgaaataatctgatctggtctttaatttactgaattgaaactaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52140" stop="54007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52440" g_stop="52669" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="340" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="611" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53547" g_stop="53707" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="772" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E317293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52440" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATC</genome_strand>
        <mrna_strand>TTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214050" ref_strand="+" ref_description="SGN-E214050 [cLEC-80-G17]">
      <seq>ttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggangtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaatccattaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52141" stop="54109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52441" g_stop="52669" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="339" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="610" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="707" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53754" g_stop="53809" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="762" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E214050" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52441" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTC</genome_strand>
        <mrna_strand>TTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGANGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAA-TCCATTAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247483" ref_strand="+" ref_description="SGN-E247483 [cLEF-42-A13]">
      <seq>ttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52141" stop="53644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52441" g_stop="52669" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="339" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53344" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="496" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E247483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52441" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTT</genome_strand>
        <mrna_strand>TTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202429" ref_strand="+" ref_description="SGN-E202429 [cLEC-6-K11]">
      <seq>ttatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52141" stop="53634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52441" g_stop="52669" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="339" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53334" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="486" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E202429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52441" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCA</genome_strand>
        <mrna_strand>TTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440585" ref_strand="+" ref_description="SGN-E440585 [cSTA-17-D5]">
      <seq>cgaggtctaatcctcactagatctatcataccatttcttcattcattctttctaattttattactattctttaagcattgctccaatggggaatgttgcacttttccatttgatttgtggaatcttcattttttggagtgtttctgtggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttctcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagactcgaccttgttacaaatgacaatgtaatcctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52143" stop="53133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52441" g_stop="52669" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52833" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="302" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E440585" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52441" e_stop="52669"/>
          <exon e_start="52761" e_stop="52833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAATCCTCACTAGATCTATCATA-CAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATC</genome_strand>
        <mrna_strand>CGAGGTCTAATCCTCACTAGATCTATCATACCATTTCTTCATTCATTCTTTCTAATTTTATTACTA-TTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTCCATTTGATTTGTGGAATCTTCATTTTTTGGAGTGTTTCTGTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTCTCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTCGACCTTGTTACAAATGACAATGTAATCCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210354" ref_strand="+" ref_description="SGN-E210354 [cLEC-35-L15]">
      <seq>tatgtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52142" stop="53746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52442" g_stop="52669" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="338" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53446" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="597" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E210354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52442" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAG</genome_strand>
        <mrna_strand>TATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463664" ref_strand="+" ref_description="SGN-E463664 [cPRO-15-K6]">
      <seq>tatgtctaattctcactagatctatcatacatttcttcattcattctttctatttttacaactattctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaatcttcatattttggagtgtttctgtggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttctcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagactcgaccttgttacaaatgacaatgtaatcctcaatctgattaataaattggatgagcctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaattgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatacttcccttcaactgaattgcatagagctgntggaggtttcggagcacttaacgtgtatgcgagatctgtgatctcagttccatatgctaaacctgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52142" stop="53712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52442" g_stop="52669" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="337" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53413" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="563" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E463664" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52442" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGA</genome_strand>
        <mrna_strand>TATGTCTAATTCTCACTAGATCTATCATACATTTCTTCATTCATTCTTTCTATTTTTACAACTA-TTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATCTTCATATTTTGGAGTGTTTCTGTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTCTCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTCGACCTTGTTACAAATGACAATGTAATCCTCAATCTGATTAATAAATTGGATGAGCCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATACTTCCCTTCAACTGAATTGCATAGAGCTGNTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTGATCTCAGTTCCATATGCTAAACCTGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703183" ref_strand="+" ref_description="SGN-E703183 [FA20DB09]">
      <seq>gtctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtccagattgaaggatcccacgtcttgcagaaacttctatgattctcttgatgtccatgttggtcaatctatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52145" stop="54211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52445" g_stop="52669" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="335" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="606" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="703" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53754" g_stop="53911" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="862" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E703183" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52445" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAG-AACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCT</genome_strand>
        <mrna_strand>GTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCCAGATTGAAGGATCCCACGTCTTGCAGAAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331549" ref_strand="+" ref_description="SGN-E331549 [cTOD-9-J5]">
      <seq>tctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52146" stop="53739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52446" g_stop="52669" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="334" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53439" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="586" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E331549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52446" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTG</genome_strand>
        <mrna_strand>TCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206348" ref_strand="+" ref_description="SGN-E206348 [cLEC-23-D21]">
      <seq>ctaatcctcactagatctatcatagagttcttcattcattctgtctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52147" stop="53578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52447" g_stop="52669" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="333" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53278" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="424" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E206348" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52447" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAG</genome_strand>
        <mrna_strand>CTAATCCTCACTAGATCTATCATAGAGTTCTTCATTCATTCTGTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205214" ref_strand="+" ref_description="SGN-E205214 [cLEC-16-J2]">
      <seq>ctaatcctcactagatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52147" stop="53574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52447" g_stop="52669" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="333" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53274" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="420" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E205214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52447" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTA</genome_strand>
        <mrna_strand>CTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213014" ref_strand="+" ref_description="SGN-E213014 [cLEC-72-M8]">
      <seq>agatctatcatacagttcttcattcattctttctatttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaagtctcttccttaccaaatgacctcctaataaatggacagaagcagtctaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52159" stop="53930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52459" g_stop="52669" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="321" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="592" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53547" g_stop="53630" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="675" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E213014" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52459" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTC</genome_strand>
        <mrna_strand>AGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAAGTCTCTTCCTTA-CCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445795" ref_strand="+" ref_description="SGN-E445795 [cSTA-18-J7]">
      <seq>atttcttcattcattctttctaattttattactattctttaagcattgctccaatggggaatgttgcacttttccatttgatttgtggaatcttcattttttggagtgtttctgtggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttctcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagactcgaccttgttacaaatgacaatgtaatcctcaatctgattaataaattggatgagcctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaattgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52172" stop="53613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52472" g_stop="52669" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="307" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53313" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="433" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E445795" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52472" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATA</genome_strand>
        <mrna_strand>ATTTCTTCATTCATTCTTTCTAATTTTATTACTA-TTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTCCATTTGATTTGTGGAATCTTCATTTTTTGGAGTGTTTCTGTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTCTCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTCGACCTTGTTACAAATGACAATGTAATCCTCAATCTGATTAATAAATTGGATGAGCCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473426" ref_strand="+" ref_description="SGN-E473426 [cSTB-32-G14]">
      <seq>agagaactagtctcgagtttttttcttcattcattctttctaattttattactattctttaagcattgctccaatggggaatgttgcacttttccatttgatttgtggaatcttcattttttggagtgtttctgtggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttctcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagactcgaccttgttacaaatgacaatgtaatcctcaatctgattaataaattggatgagcctcttctgttgacatggaatggaatcaaacaaaaaaagaattcttggcaagatggagttttgggaacaaattgtcccattcctataaattcaaattacacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52174" stop="53575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52474" g_stop="52669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="217" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="327" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53275" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="415" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E473426" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52474" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTAC</genome_strand>
        <mrna_strand>TTCTTCATTCATTCTTTCTAATTTTATTACTA-TTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTCCATTTGATTTGTGGAATCTTCATTTTTTGGAGTGTTTCTGTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTCTCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTCGACCTTGTTACAAATGACAATGTAATCCTCAATCTGATTAATAAATTGGATGAGCCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAAAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATAAATTCAAATTACACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211991" ref_strand="+" ref_description="SGN-E211991 [cLEC-66-J7]">
      <seq>tttttacaactatttctttaagcattgctccaatggggaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52194" stop="53733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52494" g_stop="52669" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="286" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53433" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="532" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E211991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52494" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGG</genome_strand>
        <mrna_strand>TTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335964" ref_strand="+" ref_description="SGN-E335964 [cTOE-6-B9]">
      <seq>gaatgttgcactttttcatttgatttgtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaagtttcggagcacttaacgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52231" stop="53672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52531" g_stop="52669" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="249" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53372" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="434" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E335964" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52531" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATG</genome_strand>
        <mrna_strand>GAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAAGTTTCGGAGCACTTAACGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204029" ref_strand="+" ref_description="SGN-E204029 [cLEC-22-E2]">
      <seq>atgttgcactttttcatttgatgggtggaattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52233" stop="53632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52533" g_stop="52669" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="247" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53332" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="392" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E204029" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52533" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTG</genome_strand>
        <mrna_strand>ATGTTGCACTTTTTCATTTGATGGGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214433" ref_strand="+" ref_description="SGN-E214433 [cLEC-77-D9]">
      <seq>aattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcaggnaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcangatttcaaatgtaggcttgaaaaattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52261" stop="54102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52561" g_stop="52669" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="219" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="490" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="587" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53754" g_stop="53802" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="636" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E214433" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52561" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCAT</genome_strand>
        <mrna_strand>AATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGNAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCANGATTTCAAATGTAGGCTTGAAAAATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204731" ref_strand="+" ref_description="SGN-E204731 [cLEC-14-F18]">
      <seq>aattttcattttttggagtgtttctctggtgaaagcagaggatacttataaatatttcacatggactgctacttatggaactctttatcctcttggtgttcctcaacaggtgatcctcattaatggtcaatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52261" stop="53535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52561" g_stop="52669" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52761" g_stop="52870" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="219" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53188" g_stop="53235" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E204731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52561" e_stop="52669"/>
          <exon e_start="52761" e_stop="52870"/>
          <exon e_start="53188" e_stop="53235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAGGTTGTTATTTATTGTTTTATTCGTAATTTTGTACTGCTAACTGGTATTGTTGATCAAGAAGTTGAATTTCTGATGAGTTTTGAACTTATAGGTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGG</genome_strand>
        <mrna_strand>AATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG...........................................................................................GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476693" ref_strand="+" ref_description="SGN-E476693 [cSTB-45-N11]">
      <seq>ggtcaatttcctggtccaagactcgaccttgttacaaatgacaatgtaatcctcaatctgattaataaattggatgagcctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaattgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatacttcccttcaactgaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtgatctcagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagccacaaggtattgaggcaaatattggactcagggaggtctcttccttatccaaatggcctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52476" stop="54095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52776" g_stop="52870" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="366" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="463" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53754" g_stop="53795" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="505" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E476693" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52776" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAA</genome_strand>
        <mrna_strand>GGTCAATTTCCTGGTCCAAGACTCGACCTTGTTACAAATGACAATGTAATCCTCAATCTGATTAATAAATTGGATGAGCCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATACTTCCCTTCAACTGAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTGATCTCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGCCACAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTATCCAAATGGCCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211463" ref_strand="+" ref_description="SGN-E211463 [cLEC-67-D21]">
      <seq>caatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacanggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52479" stop="54339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52779" g_stop="52870" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="363" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="460" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53754" g_stop="54039" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="746" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E211463" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52779" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACC</genome_strand>
        <mrna_strand>CAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACANGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206531" ref_strand="+" ref_description="SGN-E206531 [cLEC-23-F24]">
      <seq>caatttcctggtccaagacttgaccttgttacaaatgacaatgtaattctcaatctgattaataagttggatgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52479" stop="53869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52779" g_stop="52870" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="363" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53547" g_stop="53569" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="386" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E206531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52779" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTC</genome_strand>
        <mrna_strand>CAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456686" ref_strand="+" ref_description="SGN-E456686 [cSTS-30-A20]">
      <seq>tcctggtccaagactcgaccttgttacaaatgacaatgtaatcctcaatctgattaataaattggatgagcctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggagttttgggaacaaattgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatacttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtgatctcagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagccacaaggtattgaggcaaatattggactcagggaggtctcttccttatccaaatggcctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgaggttgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatngtggtcaatctatgtcagtccttgtcacgttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52484" stop="54230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52784" g_stop="52870" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53188" g_stop="53458" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="358" r_length="271" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="455" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53754" g_stop="53930" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="632" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E456686" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52784" e_stop="52870"/>
          <exon e_start="53188" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATC</genome_strand>
        <mrna_strand>TCCTGGTCCAAGACTCGACCTTGTTACAAATGACAATGTAATCCTCAATCTGATTAATAAATTGGATGAGCCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAATTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATACTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTGATCTCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGCCACAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTATCCAAATGGCCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGGTTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATNGTGGTCAATCTATGTCAGTCCTTGTCACGTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312769" ref_strand="+" ref_description="SGN-E312769 [cTOA-8-N19]">
      <seq>tgaacctcttctgttgacatggaatggaatcaaacaaagaaagaattcttggcaagatggacttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcactttacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtatacttattggtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52550" stop="53738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52850" g_stop="52870" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53188" g_stop="53438" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="272" r_length="251" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E312769" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52850" e_stop="52870"/>
          <exon e_start="53188" e_stop="53438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCTCTTCTGTTGACATGGTGAGTATTTTTTCGAATATGTTCCCAAAATATATGTTTTATATAATGCAGCTCTTTTGCTTGAATTTGGTCTAGACATTATTTCATAAATCTTATTGTTAGCAGTACTGAACAAGGCTTTATAGTTAGCAGTACTGAACAAGGCGAGATCGAAAGAGATTCTATGAGCTGAGGGATATATTGTTTTTACTGTCTCATTTACACTCTGGGAATCAACATAGGATTCATTGAACTAGAGGATAAAGAAGTGATTTTTCTGTTGCTTTTATTGTCATAGAAAAGTTGGAACTGTAGACTTACATGTCTGTCCTGTATAGGAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATT</genome_strand>
        <mrna_strand>TGAACCTCTTCTGTTGACATG.............................................................................................................................................................................................................................................................................................................................GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGACTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTTACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTATACTTATTGGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398556" ref_strand="+" ref_description="SGN-E398556 [TUS-19-C13]">
      <seq>caagatggagttttgggaacaaactgtcccattcctataaattcaaattacacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52919" stop="54367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53219" g_stop="53458" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="337" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="54067" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="651" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E398556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53219" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATG</genome_strand>
        <mrna_strand>CAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231558" ref_strand="+" ref_description="SGN-E231558 [cLED-4-P21]">
      <seq>aagatggagttttgggaacaaactgtcccattcctataaattcaaattggacttacaagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52920" stop="54189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53220" g_stop="53458" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="336" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="53889" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="472" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E231558" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53220" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGT</genome_strand>
        <mrna_strand>AAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTGGACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206312" ref_strand="+" ref_description="SGN-E206312 [cLEC-23-C22]">
      <seq>aagttccaaacaaaagaccagattggaagttacacatatgtcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcaaacacccgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52976" stop="54334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53276" g_stop="53458" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="280" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="54034" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="561" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E206312" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53276" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCT</genome_strand>
        <mrna_strand>AAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATGTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAAACACCCGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200072" ref_strand="+" ref_description="SGN-E200072 [cLEC-8-C20]">
      <seq>aagttccaaacaaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52976" stop="54251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53276" g_stop="53458" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="280" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="53951" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="478" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E200072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53276" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATA</genome_strand>
        <mrna_strand>AAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203489" ref_strand="+" ref_description="SGN-E203489 [cLEC-15-D22]">
      <seq>aagttccaaacaaaagaccagaggggaagttacacatattggccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52976" stop="54187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53276" g_stop="53458" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="280" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="53887" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="414" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E203489" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53276" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGAT</genome_strand>
        <mrna_strand>AAGTTCCAAACAAAAGACCAGAGGGGAAGTTACACATATTGGCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700268" ref_strand="+" ref_description="SGN-E700268 [FA12CF01]">
      <seq>aaaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52987" stop="54765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53287" g_stop="53458" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="269" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="615" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54251" g_stop="54465" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="830" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E700268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53287" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACT</genome_strand>
        <mrna_strand>AAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213656" ref_strand="+" ref_description="SGN-E213656 [cLEC-76-M8]">
      <seq>aaagaccagattggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52988" stop="54570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53288" g_stop="53458" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="268" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="614" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54251" g_stop="54270" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="634" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E213656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53288" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATG</genome_strand>
        <mrna_strand>AAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212057" ref_strand="+" ref_description="SGN-E212057 [cLEC-75-A5]">
      <seq>tggaagttacacatatttcccttcaactcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcaaggccataagatgagggttgtcgagattgaacgatcccacgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="52999" stop="54163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53299" g_stop="53458" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="257" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="53863" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="367" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E212057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53299" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="53863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTG</genome_strand>
        <mrna_strand>TGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAAGGCCATAAGATGAGGGTTGTCGAGATTGAACGATCCCACGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314217" ref_strand="-" ref_description="SGN-E314217 [cTOA-21-M21]">
      <seq>ttcaactcaattgcatagagctgtggagggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtgagcctcttgcctgactgttatagaaaagtctgactgtagaagagttcattgtcaaattttgttgatgttcttggtgtacttgcaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtaccttttatccacaagaagtctcagtggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53020" stop="54433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53320" g_stop="53643" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54133" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="704" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E314217" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314217" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53320" e_stop="53643"/>
          <exon e_start="53754" e_stop="54133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTC</genome_strand>
        <mrna_strand>TTCAACTCAATTGCATAGAGCTGTGGAGGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTCAAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316351" ref_strand="+" ref_description="SGN-E316351 [cTOA-25-E2]">
      <seq>tcaattgcatagagctgttggaggtttcggagcacttaacgtgtatgcgagatctgtaatcccagttccatatgctaaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53026" stop="54387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53326" g_stop="53458" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="230" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="54087" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="564" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E316351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53326" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGC</genome_strand>
        <mrna_strand>TCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305187" ref_strand="+" ref_description="SGN-E305187 [cLEY-18-H6]">
      <seq>taaacctgctggagatttcagtttacttattggtgattggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53101" stop="54383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53401" g_stop="53458" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="155" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="54083" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="485" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E305187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53401" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGC</genome_strand>
        <mrna_strand>TAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305966" ref_strand="+" ref_description="SGN-E305966 [cLEY-17-M4]">
      <seq>taaacctgctggagatttcagtttacttattggtgatgggtacaagagcagtcataaggtattgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53101" stop="54378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53401" g_stop="53458" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53547" g_stop="53643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="155" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="54078" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="480" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E305966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53401" e_stop="53458"/>
          <exon e_start="53547" e_stop="53643"/>
          <exon e_start="53754" e_stop="54078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGAT</genome_strand>
        <mrna_strand>TAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATGGGTACAAGAGCAGTCATAAG........................................................................................GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212497" ref_strand="+" ref_description="SGN-E212497 [cLEC-74-K23]">
      <seq>ttgaggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcactttcacatccccggagtgttcaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53250" stop="54761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53550" g_stop="53643" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="440" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54461" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="651" r_length="211" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E212497" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53550" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTG</genome_strand>
        <mrna_strand>TTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTTCACATCCCCGGAGTGTTCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538565" ref_strand="+" ref_description="SGN-E538565 [TUS-57-N18]">
      <seq>ggcaaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53254" stop="54906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53554" g_stop="53643" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="436" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54606" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="792" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E538565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53554" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCT</genome_strand>
        <mrna_strand>GGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204658" ref_strand="+" ref_description="SGN-E204658 [cLEC-14-M20]">
      <seq>aaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggtcattctcaaaatttatcgaaataatctgatctggtctttaatttactgaattgaaactaatcctcaaacagaataactcattaacaccgcctatcttatcatcttcaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53257" stop="54372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53557" g_stop="54072" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E204658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53557" e_stop="54072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTG</genome_strand>
        <mrna_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375827" ref_strand="+" ref_description="SGN-E375827 [TUS-15-O4]">
      <seq>aaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggtcattctcaaaatttatcgaaataatctgatctggtctttaatttactgaattgaaactaatcctcaaacagaataactcattaacaccgcctatcttatcatcttcaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcatggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacctctttttggacccgtgccacctgctccaactggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53257" stop="54363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53557" g_stop="54063" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E375827" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53557" e_stop="54063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACA</genome_strand>
        <mrna_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCATGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCTCTTTTTGGACCCGTGCCACCTGCTCCAACTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201275" ref_strand="+" ref_description="SGN-E201275 [cLEC-10-H19]">
      <seq>aaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggtcattctcaaaatttatcgaaataatctgatctggtctttaatttactgaattgaaactaatcctcaaacagaataactcattaacaccgcctatcttatcatcttcaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcaaggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53257" stop="54225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53557" g_stop="53925" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E201275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53557" e_stop="53925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATT</genome_strand>
        <mrna_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAAGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201193" ref_strand="+" ref_description="SGN-E201193 [cLEC-10-G21]">
      <seq>aaatattggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggtcattctcaaaatttatcgaaataatctgatctggtctttaatttactgaattgaaactaatcctcaaacagaataactcattaacaccgcctatcttatcatcttcaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53257" stop="54211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53557" g_stop="53911" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E201193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53557" e_stop="53911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCT</genome_strand>
        <mrna_strand>AAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366184" ref_strand="+" ref_description="SGN-E366184 [cLPT-1-G15]">
      <seq>tggactcagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccatcaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacctgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53263" stop="54621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53563" g_stop="53643" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="427" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54321" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="498" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E366184" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53563" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATAT</genome_strand>
        <mrna_strand>TGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATCAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCTGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393290" ref_strand="+" ref_description="SGN-E393290 [TUS-38-O16]">
      <seq>cagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53269" stop="54637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53569" g_stop="53643" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="421" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54333" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="504" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E393290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53569" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTG</genome_strand>
        <mrna_strand>CAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209414" ref_strand="+" ref_description="SGN-E209414 [cLEC-53-H21]">
      <seq>cagggaggtctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53269" stop="54630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53569" g_stop="53643" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="421" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54330" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="501" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E209414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53569" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTT</genome_strand>
        <mrna_strand>CAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203811" ref_strand="+" ref_description="SGN-E203811 [cLEC-17-J4]">
      <seq>ctcttccttacccaaatgacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcacaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtgcttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53278" stop="54571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53578" g_stop="53643" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="412" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54271" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="433" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E203811" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53578" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGC</genome_strand>
        <mrna_strand>CTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCACAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTGCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240399" ref_strand="+" ref_description="SGN-E240399 [cLED-25-J9]">
      <seq>gacctcctaataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53295" stop="54570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53595" g_stop="53643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="395" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54270" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="415" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E240399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53595" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATG</genome_strand>
        <mrna_strand>GACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243426" ref_strand="+" ref_description="SGN-E243426 [cLED-34-A12]">
      <seq>gacctcctaataaatggacagaagcagactaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgttggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgaatctcttgatggccatgttggtcaatctatgactgggcttgtcacattaaatcaggcttcaaaggactacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53295" stop="54249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53595" g_stop="53643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.303" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="53949" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="245" r_length="196" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E243426" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53595" e_stop="53643"/>
          <exon e_start="53754" e_stop="53949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTA</genome_strand>
        <mrna_strand>GACCTCCTAATAAATGGACAGAAGCAGACTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTTGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGAATCTCTTGATGGCCATGTTGGTCAATCTATGACTGGGCTTGTCACATTAAATCAGGCTTCAAAGGACTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241557" ref_strand="+" ref_description="SGN-E241557 [cLED-28-N6]">
      <seq>ataaatggacagaagcagtctaccttcagtggtgatcaaggaaagacatatatgttcaggatttcaaatgtaggcttgaaaaattccattaacttcagaattcagggccataagatgagggttgtcgagattgaaggatcccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53432" stop="54680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53604" g_stop="53643" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.303" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53754" g_stop="54099" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="386" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54251" g_stop="54380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="516" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E241557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53604" e_stop="53643"/>
          <exon e_start="53754" e_stop="54099"/>
          <exon e_start="54251" e_stop="54380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCT</genome_strand>
        <mrna_strand>ATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG..............................................................................................................GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243881" ref_strand="+" ref_description="SGN-E243881 [cLED-35-I16]">
      <seq>ccacgtcttgcagaacttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcaaacacccgttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53554" stop="54401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53854" g_stop="54099" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54260" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="255" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E243881" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53854" e_stop="54099"/>
          <exon e_start="54251" e_stop="54260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTG</genome_strand>
        <mrna_strand>CCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAAACACCCG-TTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699732" ref_strand="+" ref_description="SGN-E699732 [FA11AC05]">
      <seq>cttctatgattctcttgatgtccatgttggtcaatctatgtctgtccttgtcacattagatcagcctccaaaggactactatattgttgcttctacaaggttctccaggataagttttactgccacttcagttctccactacactaactctcagacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcttggactgcgatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacaacccaaccccaagtctagctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53569" stop="55451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53869" g_stop="54099" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54616" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="597" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="676" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55007" g_stop="55151" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="821" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E699732" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53869" e_stop="54099"/>
          <exon e_start="54251" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATG</genome_strand>
        <mrna_strand>CTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACAACCCAACCCCAAGTCTAGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425852" ref_strand="+" ref_description="SGN-E425852 [STM-45-N11]">
      <seq>ctcagacgcccgtttctggacccatgccacctgctccagctggccaaatgcattggtctatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtctcttatgttaatcctgatactccactaaagcttgctgatcacttcaacatcccaggagtgttcaacttgaactccattcaagcttatccctctggtggttcgccttacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggtttcggatctgacaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcctggactgccatattggtgtccttggacaaccnaagaatgtggaatttgagatcagctatgtgggatagacaatatcttggacnacaggtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagaatacttaatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53718" stop="55517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54018" g_stop="54099" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54616" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="448" r_length="366" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="527" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55007" g_stop="55217" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="737" r_length="210" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E425852" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54018" e_stop="54099"/>
          <exon e_start="54251" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATG</genome_strand>
        <mrna_strand>CTCAGACGCCCGTTTCTGGACCCATGCCACCTGCTCCAGCTGGCCAAATGCATTGGTCTATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTCTCTTATGTTAATCCTGATACTCCACTAAAGCTTGCTGATCACTTCAACATCCCAGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTTACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTCGGATCTGACAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCCTGGACTGCCATATTGGTGTCCTTGGACAACCNAAGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACNACAGGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGA-ATACTTAATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455499" ref_strand="+" ref_description="SGN-E455499 [cSTS-26-O22]">
      <seq>ctcagacgcccgtttctggaccctgccacctgctccagctggccaaatgcattggtctatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtctcttatgttaatcctgatactccactaaagcttgctgatcacttcaacatcccaggagtgttcaacttgaactccattcaagcttatccctctggtggttcgccttacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggtttcggatctgacaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcctggactgcccatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacangtgtnacctcagagtgtacgacccaccccccagtctagctaatgaatatgacataccaactaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53718" stop="55473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54018" g_stop="54099" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54616" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="447" r_length="366" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="526" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55007" g_stop="55173" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="695" r_length="169" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E455499" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54018" e_stop="54099"/>
          <exon e_start="54251" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTG-CGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGT-ACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGC</genome_strand>
        <mrna_strand>CTCAGACGCCCGTTTCTGGACCC-TGCCACCTGCTCCAGCTGGCCAAATGCATTGGTCTATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTCTCTTATGTTAATCCTGATACTCCACTAAAGCTTGCTGATCACTTCAACATCCCAGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTTACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTCGGATCTGACAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCCTGGACTGCCCATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACANGTGTNACCTCAGAGTGTACGACCCACCCCCCAGTCTAGCTAATGAATATGACATACCAACTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243805" ref_strand="+" ref_description="SGN-E243805 [cLED-35-D12]">
      <seq>agacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtnngttttggatctggcacatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53721" stop="55097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54021" g_stop="54099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54616" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="445" r_length="366" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="524" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55007" g_stop="55012" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="530" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E243805" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54021" e_stop="54099"/>
          <exon e_start="54251" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATAT</genome_strand>
        <mrna_strand>AGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTNNG................................................................................................TTTTGGATCTGGCACATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243769" ref_strand="+" ref_description="SGN-E243769 [cLED-35-D23]">
      <seq>agacacccgtttctggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53721" stop="55088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54021" g_stop="54099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54616" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="445" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54713" g_stop="54788" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="521" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E243769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54021" e_stop="54099"/>
          <exon e_start="54251" e_stop="54616"/>
          <exon e_start="54713" e_stop="54788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACA</genome_strand>
        <mrna_strand>AGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241954" ref_strand="+" ref_description="SGN-E241954 [cLED-27-E15]">
      <seq>tggacccgtgccacctgctccaactggacaaatgcattggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctggcaatagtgcgtcttatgttaatgctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggaggttcgcctaactcaagcacagctgtatttccaacttctcaccatgattgtatcacaaattgttttccaaaacgatgaagccaccatgcaatcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53734" stop="54884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54034" g_stop="54099" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54584" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="401" r_length="335" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E241954" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54034" e_stop="54099"/>
          <exon e_start="54251" e_stop="54584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATC-GAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGG</genome_strand>
        <mrna_strand>TGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGGCAATAGTGCGTCTTATGTTAATGCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGAGGTTCGCCTAACTCAAGCACAGCTGTATTTCCAACTTCTCACCATGATTGTATCACAAATTGTTTTCCAAAACGATGAAGCCACCATGCAATCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231855" ref_strand="+" ref_description="SGN-E231855 [cLED-7-I14]">
      <seq>ttggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53770" stop="55090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54070" g_stop="54099" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54616" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="396" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54713" g_stop="54790" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="474" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E231855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54070" e_stop="54099"/>
          <exon e_start="54251" e_stop="54616"/>
          <exon e_start="54713" e_stop="54790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACA</genome_strand>
        <mrna_strand>TTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236167" ref_strand="+" ref_description="SGN-E236167 [cLED-20-A17]">
      <seq>ttggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttgaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtattttcaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53770" stop="54883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54070" g_stop="54099" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54583" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="363" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E236167" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54070" e_stop="54099"/>
          <exon e_start="54251" e_stop="54583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTG</genome_strand>
        <mrna_strand>TTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTGAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTTCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231096" ref_strand="+" ref_description="SGN-E231096 [cLED-5-J4]">
      <seq>ttggtcgatgttgcaagccagaacatttaggtggaatctgacatcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53770" stop="54780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54070" g_stop="54099" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54251" g_stop="54480" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="260" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E231096" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54070" e_stop="54099"/>
          <exon e_start="54251" e_stop="54480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTCCTTGCACTACTACATTATTGAACTACACTTCAGTTATTTATAGATTTCAAGAATAGTTGATAACTAGAATTGTTTATAGTTTTCCATGGCCTAATCATCGTTTTCTCTGAATTGAAGGTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATC</genome_strand>
        <mrna_strand>TTGGTCGATGTTGCAAGCCAGAACATTTAG.......................................................................................................................................................GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302262" ref_strand="+" ref_description="SGN-E302262 [cLEW-19-H1]">
      <seq>tcaaatgcagctaggccaaatcctcagggttcattccattatggaaaaattacaatatcaaggacttttgttatggctaattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtagggtatgtgtcataacacttcaaacatttccattcctccttgttatataacaggggaaattcgttctaatcctcacctctattgctatcaatctgcagttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="53964" stop="55088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54264" g_stop="54788" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E302262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54264" e_stop="54788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACA</genome_strand>
        <mrna_strand>TCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577701" ref_strand="-" ref_description="SGN-E577701 [LE15CA05]">
      <seq>aattcagcacctcttatcaatggaaagctgagatatgctgtcaatagtgtgtcttatgttaatcctgatactccacttaagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcttggactgcgatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagacatacttaatttgatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacagaacacttggccgcttatgttgtaatcacacacctttgtattttatttttttagttgttggccacactagttttttgaaatgcagctaatacaaagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54042" stop="55686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54342" g_stop="54616" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="354" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55007" g_stop="55386" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="734" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E577701" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577701" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54342" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCA</genome_strand>
        <mrna_strand>AATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACACACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538563" ref_strand="+" ref_description="SGN-E538563 [TUS-57-N18](-)">
      <seq>taagcttgctgatcacttcaacatccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggcccccatgcaatcctggcatcttgatggctatgatttttgggttgtaggttttggatctggcaaatggacccaagcaagtagaaataagtccaattttgttgatgttttgactagacatactacacaggtatatcccaaattttggactgcgatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatattttggacaacaagtgtacctcagagtgtacgacccaaccccaagtttagctaatgaatatgacatcccaactaatgtttttttttgtggcaaagctgctggtagacatacttaatttgatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacagaacacttggccgcttatgttgtaatcacaaacctttgtattttatttttttagttgttggccccactagttttttgaaatgcagctaatacaaagttcattgtccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54119" stop="55699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54419" g_stop="54616" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.899" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55007" g_stop="55388" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="659" r_length="382" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="719"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E538563" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54419" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATT</genome_strand>
        <mrna_strand>TAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCCCCATGCAATCCTGGCATCTTGATGGCTATGATTTTTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACCCAAGCAAGTAGAAATAAGTCCAATTTTGTTGATGTTTTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATTTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATTTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTTTAGCTAATGAATATGACATCCCAACTAATGTTTTTTTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACAAACCTTTGTATTTTATTTTTTTAGTTGTTGGCCCCACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396085" ref_strand="+" ref_description="SGN-E396085 [TUS-19-C13](-)">
      <seq>atccccggagtgttcaacttgaactccattcaagcttatccctctggtggttcgcctaacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcttggactgcgatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagacatacttaatttgatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacagaacacttggccgcttatgttgtaatcacatacctttgtattttatttttttagttgttggccacactagttttttgaaatgcagctaatacaaagttcattgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54141" stop="55691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54441" g_stop="54616" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="255" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55007" g_stop="55388" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="637" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="650"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E396085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54441" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATT</genome_strand>
        <mrna_strand>ATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425853" ref_strand="-" ref_description="SGN-E425853 [STM-45-N11]">
      <seq>tcaacttgaactccattcaagcttatccctctggtggttcgccttacttaggcacagctgtatttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggtttcggatctgacaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcctggactgccatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacaggtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagacatacttaatttgatgagtcttatacataggcttttgtttttactggtcatgagaggttgactaggagagattgcggcataacataacacttggccgcttatgttgtaatcacatacctttgtattttaatttttttagttgttggctacactagtttttgaaatgcaactaatacgaagttaatagtaagatgaatttctataaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54154" stop="55691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54454" g_stop="54616" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="242" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55007" g_stop="55388" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="623" r_length="381" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E425853" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425853" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54454" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTT-ATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATT</genome_strand>
        <mrna_strand>TCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTTACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTCGGATCTGACAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCCTGGACTGCCATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAGGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTCTTATACATAGGCTTTTG-TTTTTACTGGTCATGAGAGGTTGACTAGGAGAGATTGCGGCATAACATAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTAATTTTTTTAGTTGTTGGCTACACTAG-TTTTTGAAATGCAACTAATACGAAGTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375826" ref_strand="+" ref_description="SGN-E375826 [TUS-15-O4](-)">
      <seq>ttttccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcttggactgcgatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagacatacttaatttaatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacagaacacttggccgcttatgttgtaatcacatacctttgtattttatttttttagttgttggccacactagttttttgaaatgcagctaatacaaagttcattgtacttaaaaattcctagttctaaatatagcaaacaaatatgatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54216" stop="55737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54515" g_stop="54616" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="181" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55007" g_stop="55436" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="611" r_length="430" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E375826" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54515" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAA</genome_strand>
        <mrna_strand>TTTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTAATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAAATATGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366185" ref_strand="+" ref_description="SGN-E366185 [cLPT-1-G15](-)">
      <seq>tccaacttctcaccatgatttcatcgaaattgttttccaaaacgatgaggccaccatgcaatcctggcatcttgatggctatgatttctgggttgtaggttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgacaagacatactacacaggtatatcccaaatcttggactgcaatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagacatacttaatttgatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacataacacttggccgcttatgttgtaatcacatacctttgtattttatttttttagttgttggccacactagttttttaaaatgcagctaatacaaagttcattgtaagttaaaattcctagttctaaatatagcaaacaattgtgatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54218" stop="55737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54518" g_stop="54616" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54713" g_stop="54791" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="178" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55007" g_stop="55442" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="614" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E366185" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54518" e_stop="54616"/>
          <exon e_start="54713" e_stop="54791"/>
          <exon e_start="55007" e_stop="55442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAAATTACT</genome_strand>
        <mrna_strand>TCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG................................................................................................TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACAAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCTTGGACTGCAATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACATAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTAAAATGCAGCTAATACAAAGTTCATTGTAAGTTAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254870" ref_strand="-" ref_description="SGN-E254870 [cLEG-33-H22]">
      <seq>gttttggatctggcaaatggacacaagcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcttggactgcgatattggtgtccttggacaaccaaggaatgtggaacgttgtagatcacgnctatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgcttttctttgtggcaaagctgctggtagacatacttaatttgatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacagaacacttggccgcttatgttgtaatcacatacctttgtattttatttttttagttgttggccacactagttttttgaaatgcaggtaatacaaagttcattgtacttaaaaattcctagttgtaaatatagcgaacaattgtgatcaaaaaaaaaaaaaaaaaagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54412" stop="55737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54712" g_stop="54791" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55007" g_stop="55436" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="514" r_length="434" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="530"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E254870" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254870" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54712" e_stop="54791"/>
          <exon e_start="55007" e_stop="55436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAA-TTTG-AGATCA-G-CTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAA</genome_strand>
        <mrna_strand>GTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAACGTTGTAGATCACGNCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTTTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGGTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTGTAAATATAGCGAACAATTGTGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257747" ref_strand="-" ref_description="SGN-E257747 [cLEG-39-D6]">
      <seq>gcaagtagaaataagtacaatcttgttgatgctctgactagacatactacacaggtatatcccaaatcttggactgcgatattggtgtccttggacaaccaaggaatgtggaatttgagatcagctatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagacatacttaatttgatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacagaacacttggccgcttatgttgtaatcacatacctttgtattttatttttttagttgttggccacactagttttttgaaatgcagctaatacaaagttcattgtacttaaaaattcctagttctaaatatagcaaacaattgtgatcaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54438" stop="55737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54738" g_stop="54791" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55007" g_stop="55436" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="484" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E257747" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257747" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54738" e_stop="54791"/>
          <exon e_start="55007" e_stop="55436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAGGTAAATGCAACAATTTCACCAATTCACCAACTATGTTAAAAAAGATTTGCACAATCGTATCCCTTAAGGACATTGATTGGAAATATGGCACAAATGGTAACTTAACATACTATAACACGTTAAACTACACTGATCATGTAGAAATGTCTTTATACTAACGTGTATATAACTCAATGATAAATCATTCTAAGCGCGACATGAAATGGTTCTTGCAGGTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAA</genome_strand>
        <mrna_strand>GCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG.......................................................................................................................................................................................................................GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398061" ref_strand="+" ref_description="SGN-E398061 [TUS-38-O16](-)">
      <seq>accaaggaatgtggaatttgagatcagntatgtgggatagacaatatcttggacaacaagtgtacctcagagtgtacgacccaaccccaagtctagctaatgaatatgacataccaactaatgctcttctttgtggcaaagctgctggtagacatacttaatttgatgagttttatacataggcttttgttttttactggtcatgagaggttgactagcagagattgcggcaaaacagaacacttggccgcttatgttgtaatcacatacctttgtattttatttttttagttgttggccacactagttttttgaaatgcagctaatacaaagttcattgtactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="54750" stop="55699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55050" g_stop="55403" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E398061" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55050" e_stop="55403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCC</genome_strand>
        <mrna_strand>ACCAAGGAATGTGGAATTTGAGATCAGNTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213224" ref_strand="+" ref_description="SGN-E213224 [cLEC-72-D6]">
      <seq>taaactcatttattttaacgtcaattaatatggattattattgcattcctctagctctcttgtttgcctggactttgttccaaggcttgaatttgttagtagcgttaacatcaaatagaagcaaaaagttacctccaggaccctttccattatccataataggaaatcttcacttactgggaattcaaccccatcgatcccttgccaaactggccgattctcatggcccaattatgcacctgaagttgggccaaataacaactgtggtgatttcttcttcagacatggctaaacaaatgctccaaaagcaagacttagccttctctagcagatcaattcctgatactgtccaagtagacaactttcacatgttctccgttgtttggcttcccgcttcagggcctcaatggagaactctccgcaaaatattgaattcccacatcttctccgttaacaagcttgatgccacccagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="58626" stop="59702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58926" g_stop="59402" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E213224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58926" e_stop="59402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTCATTTATTTTAACGTCAATTAATATGGATTATTATTGCATTCCTCTAGCTCTCTTGTTTGCCTGGACTTTGTTCCAAGGCTTGAATTTGTTAGTAGCGTTAACATCAAATAGAAGCAAAAAGTTACCTCCAGGACCCTTTCCATTATCCATAATAGGAAATCTTCACTTACTGGGAATTCAACCCCATCGATCCCTTGCCAAACTGGCCGATTCTCATGGCCCAATTATGCACCTGAAGTTGGGCCAAATAACAACTGTGGTGATTTCTTCTTCAGACATGGCTAAACAAATGCTCCAAAAGCAAGACTTAGCCTTCTCTAGCAGATCAATTCCTGATACTGTCCAAGTAGACAACTTTCACATGTTCTCCGTTGTTTGGCTTCCCGCTTCAGGGCCTCAATGGAGAACTCTCCGCAAAATATTGAATTCCCACATCTTCTCCGTTAACAAGCTTGATGCCACCCAGCATC</genome_strand>
        <mrna_strand>TAAACTCATTTATTTTAACGTCAATTAATATGGATTATTATTGCATTCCTCTAGCTCTCTTGTTTGCCTGGACTTTGTTCCAAGGCTTGAATTTGTTAGTAGCGTTAACATCAAATAGAAGCAAAAAGTTACCTCCAGGACCCTTTCCATTATCCATAATAGGAAATCTTCACTTACTGGGAATTCAACCCCATCGATCCCTTGCCAAACTGGCCGATTCTCATGGCCCAATTATGCACCTGAAGTTGGGCCAAATAACAACTGTGGTGATTTCTTCTTCAGACATGGCTAAACAAATGCTCCAAAAGCAAGACTTAGCCTTCTCTAGCAGATCAATTCCTGATACTGTCCAAGTAGACAACTTTCACATGTTCTCCGTTGTTTGGCTTCCCGCTTCAGGGCCTCAATGGAGAACTCTCCGCAAAATATTGAATTCCCACATCTTCTCCGTTAACAAGCTTGATGCCACCCAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312267" ref_strand="+" ref_description="SGN-E312267 [cTOA-5-N21]">
      <seq>tcttgtttgcctggactttgttccaaggcttgaatttgttagtagcgttaacatcaaatagaagcaaaaagttacctccaggaccctttccattatccataataggaaatcttcacttactgggaattcaaccccatcgatcccttgccaaactggccgattctcatggcccaattatgcacctgaagttgggccaaataacaactgtggtgatttcttcttcagacatggctaaacaaatgctccaaaagcaagacttagccttctctagcagatcaattcctgatactgtccaagtagacaactttcacatgttctccgttgtttggcttcccgcttcagggcctcaatggagaactctccgcaaaatattgaattcccacatcttctccgttaacaagcttgatgccacccagcatcttaggtacaagaagatggaagaacttgttgtttactgtaaaaggagtagccagatgggggaggcagtagatattggtggtgcaatttttaggaccatgttgaatttactttccaacactctaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="58683" stop="59938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58983" g_stop="59406" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59407" i_stop="59515" i_length="109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59516" g_stop="59638" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="547" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E312267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58983" e_stop="59406"/>
          <exon e_start="59516" e_stop="59638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTTGCCTGGACTTTGTTCCAAGGCTTGAATTTGTTAGTAGCGTTAACATCAAATAGAAGCAAAAAGTTACCTCCAGGACCCTTTCCATTATCCATAATAGGAAATCTTCACTTACTGGGAATTCAACCCCATCGATCCCTTGCCAAACTGGCCGATTCTCATGGCCCAATTATGCACCTGAAGTTGGGCCAAATAACAACTGTGGTGATTTCTTCTTCAGACATGGCTAAACAAATGCTCCAAAAGCAAGACTTAGCCTTCTCTAGCAGATCAATTCCTGATACTGTCCAAGTAGACAACTTTCACATGTTCTCCGTTGTTTGGCTTCCCGCTTCAGGGCCTCAATGGAGAACTCTCCGCAAAATATTGAATTCCCACATCTTCTCCGTTAACAAGCTTGATGCCACCCAGCATCTTAGGTATATATAATTAATTTTGATAATAAAACGACGGCAAGACTCATAACCGTCCTATTTTTTATATGTTATCGATCACCGACCTCATCAAAGTTTATTTATTTTTTGTAAGGTACAAGAAGATGGAAGAACTTGTTGTTTACTGTAAAAGGAGTAGCCAGATGGGGGAGGCAGTAGATATTGGTGGTGCAATTTTTAGGACCATGTTGAATTTACTTTCCAACACTCTAATCTC</genome_strand>
        <mrna_strand>TCTTGTTTGCCTGGACTTTGTTCCAAGGCTTGAATTTGTTAGTAGCGTTAACATCAAATAGAAGCAAAAAGTTACCTCCAGGACCCTTTCCATTATCCATAATAGGAAATCTTCACTTACTGGGAATTCAACCCCATCGATCCCTTGCCAAACTGGCCGATTCTCATGGCCCAATTATGCACCTGAAGTTGGGCCAAATAACAACTGTGGTGATTTCTTCTTCAGACATGGCTAAACAAATGCTCCAAAAGCAAGACTTAGCCTTCTCTAGCAGATCAATTCCTGATACTGTCCAAGTAGACAACTTTCACATGTTCTCCGTTGTTTGGCTTCCCGCTTCAGGGCCTCAATGGAGAACTCTCCGCAAAATATTGAATTCCCACATCTTCTCCGTTAACAAGCTTGATGCCACCCAGCATCTTAG.............................................................................................................GTACAAGAAGATGGAAGAACTTGTTGTTTACTGTAAAAGGAGTAGCCAGATGGGGGAGGCAGTAGATATTGGTGGTGCAATTTTTAGGACCATGTTGAATTTACTTTCCAACACTCTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362513" ref_strand="+" ref_description="SGN-E362513 [cLPP-1-E9]">
      <seq>tgaaattgggccaaatatcaactgtggtgatttcttcttcagacatggctaaacaagtgctccaaaagcaagacttagacttctctagccagatcaattcctgataccggtccaaatggacaactttcacatgttctccgtttcttggcttccctcttcccaacctcaatggagaaatctcagaaaaataatgaattcacacatcttctccgttaacaagcttgattctagccagaaccttaggtacaagaagatggaagaacttgttgtttactgtgaaaggagtagccaaatgggggaggcggtagatattggtggtgcaatttttaggaccatgttgaatctactttccaacactctattctcaaaggacttggcagatccgtatggaaattcgggtaaagaatttaaggatctggtggagggactaatgatagacatgggtaaaccaaactgggtggattacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="58866" stop="60041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59166" g_stop="59406" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59407" i_stop="59515" i_length="109">
            <donor d_prob="0.980" d_score="0.88"/>
            <acceptor a_prob="0.502" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59516" g_stop="59741" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="469" r_length="226" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E362513" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59166" e_stop="59406"/>
          <exon e_start="59516" e_stop="59741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTGGGCCAAATAACAACTGTGGTGATTTCTTCTTCAGACATGGCTAAACAAATGCTCCAAAAGCAAGACTTAGCCTTCTCTAG-CAGATCAATTCCTGATA-CTGTCCAAGTAGACAACTTTCACATGTTCTCCGTTGTTTGGCTTCCCGCTTCAGGGCCTCAATGGAGAACTCTCCGCAAAATATTGAATTCCCACATCTTCTCCGTTAACAAGCTTGATGCCACCCAGCATCTTAGGTATATATAATTAATTTTGATAATAAAACGACGGCAAGACTCATAACCGTCCTATTTTTTATATGTTATCGATCACCGACCTCATCAAAGTTTATTTATTTTTTGTAAGGTACAAGAAGATGGAAGAACTTGTTGTTTACTGTAAAAGGAGTAGCCAGATGGGGGAGGCAGTAGATATTGGTGGTGCAATTTTTAGGACCATGTTGAATTTACTTTCCAACACTCTAATCTCAAAGGACTTGGCAGATCCGTATGAAAATTCGGGTAAAGAATTTAAGGATTTGGTGGAGGGACTAATGATAGACATGGGTAAACCAAATTGGGTGGACTACTTT</genome_strand>
        <mrna_strand>TGAAATTGGGCCAAATATCAACTGTGGTGATTTCTTCTTCAGACATGGCTAAACAAGTGCTCCAAAAGCAAGACTTAGACTTCTCTAGCCAGATCAATTCCTGATACCGGTCCAAATGGACAACTTTCACATGTTCTCCGTTTCTTGGCTTCCCTCTTCCCAACCTCAATGGAGAAATCTCAGAAAAATAATGAATTCACACATCTTCTCCGTTAACAAGCTTGATTCTAGCCAGAACCTTAG.............................................................................................................GTACAAGAAGATGGAAGAACTTGTTGTTTACTGTGAAAGGAGTAGCCAAATGGGGGAGGCGGTAGATATTGGTGGTGCAATTTTTAGGACCATGTTGAATCTACTTTCCAACACTCTATTCTCAAAGGACTTGGCAGATCCGTATGGAAATTCGGGTAAAGAATTTAAGGATCTGGTGGAGGGACTAATGATAGACATGGGTAAACCAAACTGGGTGGATTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200989" ref_strand="+" ref_description="SGN-E200989 [cLEC-5-A18]">
      <seq>agatgaatggacaaaagagtagtgatgttttagacaccttactcacagcgactgaagataatccacaagatattgatcgcaagcatatagctacaatacttttggtgagcactcactactttgagaatattactctcatgatatcaaagtcaagtccatttttgtcaccatgtttgatacattaattggacatgcatatagtatttttcaaattatgaaaaattaaaaatctttagtttattttcagtagtggtccttgtttttacaaaccgaattgacttgttcagtgtgcccctctctttgaattatcaaccctaagtggtttcagggagtaattttcggctcaaagttacgttgtgggtgtgtatcttaatctcaggacctatttaatgcgggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="59551" stop="60549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59851" g_stop="60249" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E200989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59851" e_stop="60249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAATGGACAAAAGAGTAGTGATGTTTTAGACACCTTACTCACAGCGACTGAAGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAAC</genome_strand>
        <mrna_strand>AGATGAATGGACAAAAGAGTAGTGATGTTTTAGACACCTTACTCACAGCGACTGAAGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244864" ref_strand="+" ref_description="SGN-E244864 [cLEF-2-F1]">
      <seq>agtgatgttttagacaccttactcacagcgactgaagataatccacaagatattgatcgcaagcatatagctacaatacttttggtgagcactcactactttgagaatattactctcatgatatcaaagtcaagtccatttttgtcaccatgtttgatacattaattggacatgcatatagtatttttcaaattatgaaaaattaaaaatctttagtttattttcagtagtggtccttgtttttacaaaccgaattgacttgttcagtgtgcccctctctttgaattatcaaccctaagtggtttcagggagtaattttcggctcaaagttacgttgtgggtgtgtatcttaatctcaggacctatttaatgcgggaactgacacaagttcgaatgtagtggaatgggctatgactgagcttcttagatctccagatattatgaagaaagtccaagctgagctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactaccttacttgcagtgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="59571" stop="60757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59871" g_stop="60457" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E244864" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59871" e_stop="60457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGTTTTAGACACCTTACTCACAGCGACTGAAGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGA</genome_strand>
        <mrna_strand>AGTGATGTTTTAGACACCTTACTCACAGCGACTGAAGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTACCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369466" ref_strand="+" ref_description="SGN-E369466 [TUS-23-C13]">
      <seq>agataatccacaagatattgatcgcaagcatatagctacaatacttttggacctatttaatgcgggaactgacacaagttcgaatgtagtggaatgggctatgactgagcttcttagatctccagatattatgaagaaagtccaagctgagctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcagtgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaaaagtagagcaagatgttgagctgtgtggctacactgtccctaaaggttcgaaagtgctcattaatgtgtgggcaattggccgggactcgactctatgggaagaccctttggtgtttaatcctgatagatttaaggattcaaaattggatgtgcgaggtcaagattttgagttaattccatttggtgctggtcgaagaatttgtcctggtctgccattggcaataaggatggtcccagtactgctaggcacaatgttgaatacatttaagtggaaaattgagggtgatattgcaccaaatgacatggacatgcaggagaaatttggcctcaccttggccaaacttcgtcctctccgagctgtcccccttcccctttaatatccaaaaaaaatgaataaataaataataatttaatataagcacaaatttatgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="59606" stop="61191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59906" g_stop="59954" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59955" i_stop="60229" i_length="275">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60230" g_stop="60888" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="708" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E369466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59906" e_stop="59954"/>
          <exon e_start="60230" e_stop="60888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCACAAATTTAT</genome_strand>
        <mrna_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTG...................................................................................................................................................................................................................................................................................GACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCACAAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242664" ref_strand="+" ref_description="SGN-E242664 [cLED-30-H17]">
      <seq>agataatccacaagatattgatcgcaagcatatagctacaatacttttggacctatttaatgcgggaactgacacaagttcgaatgtagtggaatgggctatgactgagcttcttagatctccagatattatgaagaaagtccaagctgagctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcagtgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaaaagtagagcaagatgttgagctgtgtggctacactgtccctaaaggttcgaaagtgctcattaatgtgtgggcaattggccgggactcgactctatgggaagaccctttggtgtttaatcctgatagatttaaggattcaaaattggatgtgcgaggtcaagattttgagttaattccatttggtgctggtcgaagaatttgtcctggtctgccattggcaataaggatggtcccagtactgctaggcacaatgttgaatacatttaagtggaaaattgagggtgatattgcaccaaatgacatggacatgcaggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="59606" stop="61079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59906" g_stop="59954" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59955" i_stop="60229" i_length="275">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60230" g_stop="60779" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="599" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E242664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59906" e_stop="59954"/>
          <exon e_start="60230" e_stop="60779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAAT</genome_strand>
        <mrna_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTG...................................................................................................................................................................................................................................................................................GACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228121" ref_strand="+" ref_description="SGN-E228121 [cLED-2-D16]">
      <seq>agataatccacaagatattgatcgcaagcatatagctacaatacttttggacctatttaatgcgggaactgacacaagttcgaatgtagtggaatgggctatgactgagcttcttagatctccagatattatgaagaaagtccaagctgagctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcagtgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaaaagtagagcaagatgttgagctgtgtggctacactgtccctaaaggttcgaaagtgctcattaatgtgtgggcaattggccgggactcgactctatgggaagaccctttggtgtttaatcctgatagatttaaggattcaaaattggatgtgcgaggtcaagattttgagttaattccatttggtgctggtcgaagaatttgtcctggtctgccattggcaataaggatggtcccagtactgctaggcacaatgttgaatacatttaagtggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="59606" stop="61034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59906" g_stop="59954" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59955" i_stop="60229" i_length="275">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60230" g_stop="60734" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="554" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E228121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59906" e_stop="59954"/>
          <exon e_start="60230" e_stop="60734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAA</genome_strand>
        <mrna_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTG...................................................................................................................................................................................................................................................................................GACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242427" ref_strand="+" ref_description="SGN-E242427 [cLED-30-H11]">
      <seq>agataatccacaagatattgatcgcaagcatatagctacaatacttttggacctatttaatgcgggaactgacacaagttcgaatgtagtggaatgggctatgactgagcttcttagatctccagatattatgaagaaagtccaagctgagctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcagtgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaaaagtagagcaagatgtgtgagctgtgtggctacactgtccctaaaggttcgaaagtgctcattaatgtgtgggcaattggccgggactcgactctatgggaagaccctatggtgtttaatcctgatagatttaaggattcaaaattggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="59606" stop="60910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59906" g_stop="59954" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59955" i_stop="60229" i_length="275">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60230" g_stop="60610" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="431" r_length="382" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E242427" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59906" e_stop="59954"/>
          <exon e_start="60230" e_stop="60610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGT-TGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTG</genome_strand>
        <mrna_strand>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTG...................................................................................................................................................................................................................................................................................GACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTGTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTATGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369465" ref_strand="+" ref_description="SGN-E369465 [TUS-23-C13](-)">
      <seq>aagtccaagctgagctcgtacaagtcctcggaaaaggtaacctgatgaaagaaactgacgttgcccgactcccttacttgcagtgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctaaaaaagtagagcaagatgttgagctgtgtggctacactgtccataaaggttaaaaagtgctcattaatgtgtgggcaattggccgggactcgactctatgggaagaccctttggtgtttaatcctgatagatttaaggattcaaaattggatgtgcgaggtcaagattttgagttaattccatttggtgctggtcgaagaatttgtcctggtctgccattggcaataaggatggtcccagtactgctaggcacaatgttgaatacatttaagtggaaaattgagggtgatattgcaccaaatgacatggacatgcaggagaaatttggcctcaccttggccaaacttcgtcctctccgagctgtcccccttcccctttaatatccaaaaaaaatgaataaataaataataatttaatataagcacaaatttatgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="60018" stop="61191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60318" g_stop="60888" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E369465" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60318" e_stop="60888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCACAAATTTAT</genome_strand>
        <mrna_strand>AAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAAAAGGTAACCTGATGAAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTAAAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCATAAAGGTTAAAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCACAAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227968" ref_strand="+" ref_description="SGN-E227968 [cLEL-39-L1](-)">
      <seq>ccctttggtgtttaatcctgataaatttaaggattcataattgcatgtgctaggtcaaaattttgagttaattccatttggtgctggtccaagaatttgtcctggtctgccattggcaataaggatggtcccagtactgctaggcacaatgttgaatacatttaagtggaaaattgagggtgatattgcaccaaatgacatggacatgcaggagaaatttggcctcaccttggccaaacttcgtcctctccgagctgtcccccttcccctttaatatccaaaaaaaatgaataaataaataataatttaatataagcccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="60262" stop="61183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60562" g_stop="60882" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="322" polyA_stop="337"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E227968" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60562" e_stop="60882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCACAA</genome_strand>
        <mrna_strand>CCCTTTGGTGTTTAATCCTGATAAATTTAAGGATTCATAATTGCATGTGCTAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTCCAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269511" ref_strand="+" ref_description="SGN-E269511 [cLEM-2-N4]">
      <seq>gtttttattgcactcctctagctctcttgcttgcctggactttgttccaatgcttcaatttattaacaacaaatagaagcagaaaggttcctccaggaccctttccattacccataatcggaaatcttcatttactggggaatcaacctcataaatcccttgcaaaactcgccgattcgcatggcgcagtgatgcgtctgaagttggggcaaataacaactgtggtgatttcttcttcagatatggccaaacaagtgctccaaaagcaagattcagccttttctagcaggtctattcctgatatagtcaaagaggaaaattttcacatgttttccgttggttggcttcctgcttcccatcctcaatggagaattttccgcaaattcatgacttcccacatcttctctattaacaagcttgatgccagtcaccaccttaggtaccaagaagttggaagaacttgttggttactgtaaaaagagtagccagattggagaggcggtagatattggtggtgcagttttcaggactatgttgaacttactttccaacactctcttctcaaaggacttggcagatccgtatgaaaattctggtaaagaatttaaggaattgatggagggaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="67884" stop="69498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68184" g_stop="68622" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68623" i_stop="69008" i_length="386">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69009" g_stop="69198" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="630" r_length="191" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E269511" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68184" e_stop="68622"/>
          <exon e_start="69009" e_stop="69198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTATTGCACTCCTCTAGCTCTCTTGCTTGCCTGGACTTTGTTCCAATGCTTCAATTTATTAACAACAAATAGAAGCAGAAAGGTTCCTCCAGGACCCTTTCCATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTCGCATGGCGCAGTGATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTTTCCGCAAATTCATGACTTCCCACATCTTCTCTATTAACAAGCTTGATGCCAGTCACCACCTTAGGTACGTAGTATTGTTTGTCTGACTTCGTCATCTAAAAATTTTAAACTATTTATTTGATTAATTATGTTTTTCAACGAATATAGATATTTTTTATAACACGATAGAGAGATTTAGACTCAGAATTTCTGTTTGCTCTAATATCTCGAAATTATTTGTTCTCTTTTAGACACGTGTTATAACATTGAAATTTTGTTTGACTTGCAATTTGATTTTTTTTTTCTTTTTTCAATGATAATACTAATAACATATTCTTAGAAATTTTGATTTCAAATCACATGTCCCAACTCCTGGATGGTTCTGATTTTAACTAATGATATTATTATACGGCATATCAAAAAATAATTTAGTTAAACTAGTGATTTAATTAATCGTGTTTTTTTAATAAGGTA-CAAGAAGTTGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGTAGATATTGGTGGTGCAGTTTTCAGGACTATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAAAGAATTTAAGGAATTGATGGAGGGAATGATG</genome_strand>
        <mrna_strand>GTTTTTATTGCACTCCTCTAGCTCTCTTGCTTGCCTGGACTTTGTTCCAATGCTTCAATTTATTAACAACAAATAGAAGCAGAAAGGTTCCTCCAGGACCCTTTCCATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTCGCATGGCGCAGTGATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTTTCCGCAAATTCATGACTTCCCACATCTTCTCTATTAACAAGCTTGATGCCAGTCACCACCTTAG..................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAGAAGTTGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGTAGATATTGGTGGTGCAGTTTTCAGGACTATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAAAGAATTTAAGGAATTGATGGAGGGAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690014" ref_strand="+" ref_description="SGN-E690014 [LH_Ea02G12]">
      <seq>cgttactcctctatctctcttgcttgcctggattttgttcccatgcttcaatttattaacaacaaatagaagcagaaaggttcctccaggaccctttccattacccataatcggaaatcttcatttactggggaatcaacctcataaatcccttgcaaaactcgccgatttgcatggcccagttatgcgtctgaagttggggcaaataacaactgtggtgatttcttcttcagatatggccaaacaagtgctccaaaagcaagattcagccttttctagcaggtctattcctgatatactcaaagaggaaaattttcacatgttttccgttggttggcttcctgcttcccatcctcaatggagaattctccgcaaattgatgacttcccacatcttctctatgaacaagcttgatgccagtcaccacctcaggtacaagaagatggaagaacttgttggttactgtaaaaagagtagccagattggagaggcggaagatattggtggtgcaattttcaggaccatgttgaacttactttccaacactctcttctcaaaggacttggcagatccgtatgaaaattctggtaaagaatttaaggaattgatggagggaatgctgatggagatgggtaaaccagaactggtagactactttcccgtcttgaaaatagtgcatgtgcaagttctaagtcgatataattctcatttggggaaactactaaagctatttaatggattcataaatgagaggctggagataaggaaatccccaagttatcaaaacactgatgttttagatgccttaatcacatcaagtgaacagaatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="67895" stop="69709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68205" g_stop="68622" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="432" r_length="418" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68623" i_stop="69008" i_length="386">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69009" g_stop="69409" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="833" r_length="401" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E690014" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68205" e_stop="68622"/>
          <exon e_start="69009" e_stop="69409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGCTTGCCTGGACTTTGTTCCAATGCTTCAATTTATTAACAACAAATAGAAGCAGAAAGGTTCCTCCAGGACCCTTTCCATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTCGCATGGCGCAGTGATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTTTCCGCAAATTCATGACTTCCCACATCTTCTCTATTAACAAGCTTGATGCCAGTCACCACCTTAGGTACGTAGTATTGTTTGTCTGACTTCGTCATCTAAAAATTTTAAACTATTTATTTGATTAATTATGTTTTTCAACGAATATAGATATTTTTTATAACACGATAGAGAGATTTAGACTCAGAATTTCTGTTTGCTCTAATATCTCGAAATTATTTGTTCTCTTTTAGACACGTGTTATAACATTGAAATTTTGTTTGACTTGCAATTTGATTTTTTTTTTCTTTTTTCAATGATAATACTAATAACATATTCTTAGAAATTTTGATTTCAAATCACATGTCCCAACTCCTGGATGGTTCTGATTTTAACTAATGATATTATTATACGGCATATCAAAAAATAATTTAGTTAAACTAGTGATTTAATTAATCGTGTTTTTTTAATAAGGTACAAGAAGTTGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGTAGATATTGGTGGTGCAGTTTTCAGGACTATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAAAGAATTTAAGGAATTGATGGAGGGAATGATGAAGGAGATGGGTAAACCAAAATTGGTAGACTACTTTCCCGTCCTGAAAATAGTGCATCCGCAAGGTCTAAGTCGATATAATTCTCATTTGGGGAAACTACTAAAGCTATTTAATGGATTCATAAATGAGAGGCTGGAGATAAGGAAATCCCCAAGTTATCAAAACACTGATGTTTTAGATGCCTTAATCACATCAAGTGAACAGAATCCCC</genome_strand>
        <mrna_strand>CTCTCTTGCTTGCCTGGATTTTGTTCCCATGCTTCAATTTATTAACAACAAATAGAAGCAGAAAGGTTCCTCCAGGACCCTTTCCATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTTGCATGGCCCAGTTATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATACTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTCTCCGCAAATTGATGACTTCCCACATCTTCTCTATGAACAAGCTTGATGCCAGTCACCACCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGAAGATGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGAAGATATTGGTGGTGCAATTTTCAGGACCATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAAAGAATTTAAGGAATTGATGGAGGGAATGCTGATGGAGATGGGTAAACCAGAACTGGTAGACTACTTTCCCGTCTTGAAAATAGTGCATGTGCAAGTTCTAAGTCGATATAATTCTCATTTGGGGAAACTACTAAAGCTATTTAATGGATTCATAAATGAGAGGCTGGAGATAAGGAAATCCCCAAGTTATCAAAACACTGATGTTTTAGATGCCTTAATCACATCAAGTGAACAGAATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617651" ref_strand="+" ref_description="SGN-E617651 [66503]">
      <seq>ctctcttgcttgcctggactttggtccaaggcttcaatttgttagtagcattaacaacaagtagaaacagaaagcttcctccaggaccttttccattacccataatcggaaatcttcacttactgggcaatcaacctcataaatcccttgccaaactcgccgattttcatggcccaattatgcgtctgaatttggggcaaataacaactgtggtgatttcttcttcaaacatggccaaacaagtgctccaaaagcaagattcagccttttctagcaggtcaattcctgatatagtcaaagaggaaaattttcacatgttctccgttggttggcttcctgcttcccatcctcaatggagaactctccgcaaaatcatgacttcccacatcttctccattaacaagcttgatgccagtcagcaccttaggtacaagaagatccaagaacttgttgcttactgtaaaaggagtagccaaatgggggaggcggtacatattgatgatgcaattttcaggaccatgttgaacttactttctaacactctcttctcaaaggacttggcagatccgtatgaaaattctggtaacagaatttacggaattgatggagggaatgatgatggacatgggtaaaccaaaattggtagactactttcccgtcctgaaaatagtacatccggaaggtctaaggcgatataattctcgtttggggaaaactactaaagctatttcatggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="67905" stop="69619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68245" g_stop="68622" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="427" r_length="378" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68623" i_stop="69008" i_length="386">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.833" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69009" g_stop="69319" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="740" r_length="313" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E617651" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68245" e_stop="68622"/>
          <exon e_start="69009" e_stop="69319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACAACAAATAGAAGCAGAAAGGTTCCTCCAGGACCCTTTCCATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTCGCATGGCGCAGTGATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTTTCCGCAAATTCATGACTTCCCACATCTTCTCTATTAACAAGCTTGATGCCAGTCACCACCTTAGGTACGTAGTATTGTTTGTCTGACTTCGTCATCTAAAAATTTTAAACTATTTATTTGATTAATTATGTTTTTCAACGAATATAGATATTTTTTATAACACGATAGAGAGATTTAGACTCAGAATTTCTGTTTGCTCTAATATCTCGAAATTATTTGTTCTCTTTTAGACACGTGTTATAACATTGAAATTTTGTTTGACTTGCAATTTGATTTTTTTTTTCTTTTTTCAATGATAATACTAATAACATATTCTTAGAAATTTTGATTTCAAATCACATGTCCCAACTCCTGGATGGTTCTGATTTTAACTAATGATATTATTATACGGCATATCAAAAAATAATTTAGTTAAACTAGTGATTTAATTAATCGTGTTTTTTTAATAAGGTACAAGAAGTTGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGTAGATATTGGTGGTGCAGTTTTCAGGACTATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAA-AGAATTTAAGGAATTGATGGAGGGAATGATGAAGGAGATGGGTAAACCAAAATTGGTAGACTACTTTCCCGTCCTGAAAATAGTGCATCCGCAAGGTCTAAGTCGATATAATTCTCATTTGGGG-AAACTACTAAAGCTATTTAATGGATTCA</genome_strand>
        <mrna_strand>ATTAACAACAAGTAGAAACAGAAAGCTTCCTCCAGGACCTTTTCCATTACCCATAATCGGAAATCTTCACTTACTGGGCAATCAACCTCATAAATCCCTTGCCAAACTCGCCGATTTTCATGGCCCAATTATGCGTCTGAATTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAAACATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCAATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTCTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAACTCTCCGCAAAATCATGACTTCCCACATCTTCTCCATTAACAAGCTTGATGCCAGTCAGCACCTTAG..................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGAAGATCCAAGAACTTGTTGCTTACTGTAAAAGGAGTAGCCAAATGGGGGAGGCGGTACATATTGATGATGCAATTTTCAGGACCATGTTGAACTTACTTTCTAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAACAGAATTTACGGAATTGATGGAGGGAATGATGATGGACATGGGTAAACCAAAATTGGTAGACTACTTTCCCGTCCTGAAAATAGTACATCCGGAAGGTCTAAGGCGATATAATTCTCGTTTGGGGAAAACTACTAAAGCTATTTCATGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692202" ref_strand="+" ref_description="SGN-E692202 [LH_Ea08B16]">
      <seq>tctcgtgccgaattcggcacgaggattacccataatcggaaatcttcatttactggggaatcaacctcataaatcccttgcaaaactcgccgatttgcatggcccagttatgcgtctgaagttggggcaaataacaactgtggtgatttcttcttcagatatggccaaacaagtgctccaaaagcaagattcagccttttctagcaggtctattcctgatatagtcaaagaggaaaattttcacatgttttccgttggttggcttcctgcttcccatcctcaatggagaattctccgcaaattgatgacttcccacatcttctctatgaacaagcttgatgccagtcaccacctcaggtacaagaagatggaagaacttgttggttactgtaaaaagagtagccagattggagaggcggtagatattggtggtgcaattttcaggaccatgttgaacttactttccaacactctcttctcaaaggacttggcagatccgtatgaaaattctggtaaagaatttaaggaattgatggagggaatgctgatggagatgggtaaaccagaactggtagactactttcccgtcttgaaaatagtgcatgtgcaagttctaagtcgatataattctcatttggggaaactactaaagctatttaatggattcataaatgagaggctggagataaggaaatccccaagttatcaaaacactgatgttttagatgccttaatcacatcaagtgaacagaatccccaagaaattaatcacatgcatatagcaacattgtgtttggacctatttaatgccggaactggtacaatttcggacctagtggaatgggctatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="67990" stop="69895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68290" g_stop="68622" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="357" r_length="333" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68623" i_stop="69008" i_length="386">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69009" g_stop="69447" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="796" r_length="439" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69448" i_stop="69537" i_length="90">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69538" g_stop="69595" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="854" r_length="58" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E692202" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68290" e_stop="68622"/>
          <exon e_start="69009" e_stop="69447"/>
          <exon e_start="69538" e_stop="69595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTCGCATGGCGCAGTGATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTTTCCGCAAATTCATGACTTCCCACATCTTCTCTATTAACAAGCTTGATGCCAGTCACCACCTTAGGTACGTAGTATTGTTTGTCTGACTTCGTCATCTAAAAATTTTAAACTATTTATTTGATTAATTATGTTTTTCAACGAATATAGATATTTTTTATAACACGATAGAGAGATTTAGACTCAGAATTTCTGTTTGCTCTAATATCTCGAAATTATTTGTTCTCTTTTAGACACGTGTTATAACATTGAAATTTTGTTTGACTTGCAATTTGATTTTTTTTTTCTTTTTTCAATGATAATACTAATAACATATTCTTAGAAATTTTGATTTCAAATCACATGTCCCAACTCCTGGATGGTTCTGATTTTAACTAATGATATTATTATACGGCATATCAAAAAATAATTTAGTTAAACTAGTGATTTAATTAATCGTGTTTTTTTAATAAGGTACAAGAAGTTGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGTAGATATTGGTGGTGCAGTTTTCAGGACTATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAAAGAATTTAAGGAATTGATGGAGGGAATGATGAAGGAGATGGGTAAACCAAAATTGGTAGACTACTTTCCCGTCCTGAAAATAGTGCATCCGCAAGGTCTAAGTCGATATAATTCTCATTTGGGGAAACTACTAAAGCTATTTAATGGATTCATAAATGAGAGGCTGGAGATAAGGAAATCCCCAAGTTATCAAAACACTGATGTTTTAGATGCCTTAATCACATCAAGTGAACAGAATCCCCAAGAAATTAATCACATGCATATAGCAACATTGTGTTTGGTGAGCTACTCTTTCTATGTTTTATTATTATCCGTATGGGTTTGCATGATTAATTTTCAGCTCATACTTGTGGGTGCATCTTAATCTCAGGACCTATTTGATGCCGGAACTGATACAAGTTCGAACATAGTGGAATGGGCTATGACTG</genome_strand>
        <mrna_strand>ATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTTGCATGGCCCAGTTATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTCTCCGCAAATTGATGACTTCCCACATCTTCTCTATGAACAAGCTTGATGCCAGTCACCACCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGAAGATGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGTAGATATTGGTGGTGCAATTTTCAGGACCATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAAAGAATTTAAGGAATTGATGGAGGGAATGCTGATGGAGATGGGTAAACCAGAACTGGTAGACTACTTTCCCGTCTTGAAAATAGTGCATGTGCAAGTTCTAAGTCGATATAATTCTCATTTGGGGAAACTACTAAAGCTATTTAATGGATTCATAAATGAGAGGCTGGAGATAAGGAAATCCCCAAGTTATCAAAACACTGATGTTTTAGATGCCTTAATCACATCAAGTGAACAGAATCCCCAAGAAATTAATCACATGCATATAGCAACATTGTGTTTG..........................................................................................GACCTATTTAATGCCGGAACTGGTACAATTTCGGACCTAGTGGAATGGGCTATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237771" ref_strand="+" ref_description="SGN-E237771 [cLED-18-C3]">
      <seq>gggtgcatcttaatctcaggacctatttgatgccggaactgatacaagttcgaacatagtggaatgggctatgactgagcttcttagatctccagatattatgaaaagagtccaagctgagctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcaatgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaggagtagagcaagatgttgagctgtgtggctacactgtccctaaagattcaaaagtgttgattaatgtgtgggcaattggccgggactcaactttttggaaagaccctttggtgtttaatcctgatagatttatggattcaaaattggatgtgcgaggtcaaaattttgagttaattccatttggtgctggtagaagaatttgtcctggtctgccattggcaataaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="69219" stop="70295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69519" g_stop="69995" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E237771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69519" e_stop="69995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGCATCTTAATCTCAGGACCTATTTGATGCCGGAACTGATACAAGTTCGAACATAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAAAGAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGAT</genome_strand>
        <mrna_strand>GGGTGCATCTTAATCTCAGGACCTATTTGATGCCGGAACTGATACAAGTTCGAACATAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAAAGAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314559" ref_strand="+" ref_description="SGN-E314559 [cTOA-20-M7]">
      <seq>ttaatctcaggacctatttgatgccggaactgatacaagttcgaacatagtggaatgggctatgactgagcttcttagatctccagatattatgaaaagagtccaagctgagctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcaatgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaggagtagagcaagatgttgagctgtgtggctacactgtccctaaagattcaaaagtgttgattaatgtgtgggcaattggccgggactcaactttttggaaagaccctttggtgtttaatcctgatagatttatggattcaaaattggatgtgcgaggtcaaaattttgagttaattccatttggtgctggtagaagaatttgtcctggtctgccattggcaataaggatggtcccagtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="69228" stop="70308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69528" g_stop="70008" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E314559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69528" e_stop="70008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCTCAGGACCTATTTGATGCCGGAACTGATACAAGTTCGAACATAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAAAGAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATG</genome_strand>
        <mrna_strand>TTAATCTCAGGACCTATTTGATGCCGGAACTGATACAAGTTCGAACATAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAAAGAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315986" ref_strand="+" ref_description="SGN-E315986 [cTOA-23-E15]">
      <seq>ctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcaatgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaggagtagagcaagatgttgagctgtgtggctacactgtccctaaagattcaaaagtgttgattaatgtgtgggcaattggccgggactcaactttttggaaagaccctttggtgtttaatcctgatagatttatggattcaaaattggatgtgcgaggtcaaaattttgagttaattccatttggtgctggtagaagaatttgtcctggtctgccattggcaataaggatggtcccagtaatgctaggctcactgttgaatacatttaagtggaaaattgagggcgacattgcaccaaatgacttggacatgcaggagaaatttggcctcaccttaaccagacttcatcctcttagagctgttccacttccactctgaaattcaaaatcagatgcttcctagaaaaagcaatggataataaacaccgtaactaataattatatttccaataaaagtataagcacaaattatgttattttatagggaaggaaatcatagcgtatctagaggccatgctcctctccctagatcatatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="69340" stop="70604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69640" g_stop="70304" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E315986" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69640" e_stop="70304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCAATAAAAGTATAAGCACAAATTATGTTATTTTATAGGGAAGGAAATCAGAGCGTATCTAGAGGCCATGCTCCTCTCCCTAGATCATATATAG</genome_strand>
        <mrna_strand>CTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCAATAAAAGTATAAGCACAAATTATGTTATTTTATAGGGAAGGAAATCATAGCGTATCTAGAGGCCATGCTCCTCTCCCTAGATCATATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316236" ref_strand="+" ref_description="SGN-E316236 [cTOA-23-D11]">
      <seq>ctcgtacaagtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcaatgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaggagtagagcaagatgttgagctgtgtggctacactgtccctaaagattcaaaagtgttgattaatgtgtgggcaattggccgggactcaactttttggaaagaccctttggtgtttaatcctgatagatttatggattcaaaattggatgtgcgaggtcaaaattttgagttaattccatttggtgctggtagaagaatttgtcctggtctgccattggcaataaggatggtcccagtaatgctaggctcactgttgaatacatttaagtggaaaattgagggcgacattgcaccaaatgacttggacatgcaggagaaatttggcctcaccttaaccagacttcatcctcttagagctgttccacttccactctgaaattcaaaatcagatgcttcctagaaaaagcaatggataataaacaccgtaactaataattatatttcccataaaagtataagcacaaattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="69340" stop="70538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69640" g_stop="70238" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E316236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69640" e_stop="70238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCAATAAAAGTATAAGCACAAATTATGT</genome_strand>
        <mrna_strand>CTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCCATAAAAGTATAAGCACAAATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241766" ref_strand="+" ref_description="SGN-E241766 [cLEE-10-C3]">
      <seq>tcgtacatgtcctcggagaaggtaacctgatggaagaaactgacgttgcccgactcccttacttgcaatgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaggagtagagcaagatgttgagctgtgtagctacactgtccctaaagattcaaaagtgttgattaatgtgtgggcaattggccgggactcaactttttggaaagaccctttggtgtttaatcctgatagatttatggattcaaaattggatgtgcgaggtcaaaattttgagttaattccatttggtgctggtagaagaatttgtcctggtctgccattggcaataaggatggtcccagtaatgctaggctcactgttgaatacatttaagtggaaaattgagggcgacattgcaccaaatgacttggacatgcaggagaaatttggcctcaccttaaccagacttcatcctcttagagctgttccacttccactctgaaattcaaaatcagatgcttcctagaaaaagcaatggataataaacaccgtaactaataattatatttccaataaaagtataagcacaaattatgttattttatagggaaggaaatcagagcgtatctagaggccatgctcctctccctagatcatatatagaattattatatttttttttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="69341" stop="70629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69641" g_stop="70329" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E241766" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69641" e_stop="70329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCAATAAAAGTATAAGCACAAATTATGTTATTTTATAGGGAAGGAAATCAGAGCGTATCTAGAGGCCATGCTCCTCTCCCTAGATCATATATAGAATTATTATATTTTTTTTTAAAAAA</genome_strand>
        <mrna_strand>TCGTACATGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTAGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCAATAAAAGTATAAGCACAAATTATGTTATTTTATAGGGAAGGAAATCAGAGCGTATCTAGAGGCCATGCTCCTCTCCCTAGATCATATATAGAATTATTATATTTTTTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693854" ref_strand="+" ref_description="SGN-E693854 [LH_Ea02G12](-)">
      <seq>aaggtaacccgatggaggaaggtgacgctgcccgactcccttacttgcagtgcattattaaagaaacttacaggatgcaccctccagctccttttttggtacctcgaaaagtagagcaagatgttgagctgtgtggctacactgtccctaaagattcaaaagtgttgattagtgtgtgggcaattggacgggactcaactttttgggaagaccctttggtgtttaatcctgatagatttatggattcaaaattggatgtgcgaggtcaagattttgagttaattccatttggtgctggtagaagaatttgccctggtctgccattggcaataaggatggtcccagtaatgctaggctcactgttgaatacatttaagtggaaaattgagggcggcattgcaccaaaagacttggacatgcaggagaaatttggcctcaccttaaccagacttcatcctcttagagctgttccacttccactctgaaattcaaaatcagatgcttcctagatggataataaacatcgtaactaatattatatttccaataaaagtataagcacaaattatgtaattttgtagggaaggaaatcagagcgtatttagaggggctcacgtgaacttatgcttccctccctatattatatataaaagtattatatttttttaaaaaataaagaaatatatatatgtaaatccacgtttaaagtgtcatataatagatacaataatgattgggtgctttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="69359" stop="70575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69659" g_stop="70392" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="763"/>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E693854" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69659" e_stop="70392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCAATAAAAGTATAAGCACAAATTATGTTATTTTATAGGGAAGGAAATCAGAGCGTATCTAGA--GGC-CA--TG--C---T-C--CTCTCCCTAGATCATATATAGAATTATTATATTTTTTTTTAAAAAAAATAAATAAATATATATGAATCCATATTTAAAGTATCATATAATA-ATACAATGATGATTGGGT</genome_strand>
        <mrna_strand>AAGGTAACCCGATGGAGGAAGGTGACGCTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAGTGTGTGGGCAATTGGACGGGACTCAACTTTTTGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGCCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGGCATTGCACCAAAAGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCT------AG--ATGGATAATAAACATCGTAACTAAT-ATTATATTTCCAATAAAAGTATAAGCACAAATTATGTAATTTTGTAGGGAAGGAAATCAGAGCGTATTTAGAGGGGCTCACGTGAACTTATGCTTCCCTCCCTATATTATATATAAAAGTATTATATTTTTTTAAAAAATAAAGAAATATATATATGTAAATCCACGTTTAAAGTGTCATATAATAGATACAATAATGATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611679" ref_strand="+" ref_description="SGN-E611679 [61433]">
      <seq>gccaaacaagaaccacatgcactagggttaatcaaattcggcattgtgaaatcatgcgtcttcaaattctggatcatctcaacaaatactacgagtggaatcatgaactgtgaagttttcaagctgaaagaacttgatgtggagccatttcagatacaagatgttctccaatgcattcttcatacaatcatgtttcacagagcatcaggtctgatatatccaaagaatgtggatttggaactctttgagataacatatatgcagtgtaatgatgctgtaattgagaggaaaattgatgagaagattacccaattcatcgataaggtgaagaagcaccccaaccagaaacaccagatctgtgtgtctttctatgaatccaaaaacaaacagacctcatggttcacaaagaaagttgaacatcgctactgggaacactggtatgtaaatttgaatgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="76072" stop="73020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75772" g_stop="75638" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75637" i_stop="75556" i_length="82">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75555" g_stop="75519" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="172" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75518" i_stop="74868" i_length="651">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74867" g_stop="74782" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="258" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74781" i_stop="73825" i_length="957">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73824" g_stop="73729" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="354" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73728" i_stop="73424" i_length="305">
            <donor d_prob="0.801" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73423" g_stop="73320" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="458" r_length="104" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E611679" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75772" e_stop="75638"/>
          <exon e_start="75555" e_stop="75519"/>
          <exon e_start="74867" e_stop="74782"/>
          <exon e_start="73824" e_stop="73729"/>
          <exon e_start="73423" e_stop="73320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAACAAGAACCACATGCACTAGGGTTAATCAAATTCGGCATTGCGAAATCGTTCGTCTTCAAATTCTGGATCATCTCAAGAAATACTACGAGTGGAATCATGAACTGTGAAGTTTTCAAGCTGAAAGAACTTGTAAGCATCTCTCTGCTCCCCTATGAGATTGTTTATGTAGCGAGAATTTTAGCTTCAATGTTAATTTATGTTTCTATTGAAGGATGTGGAGCAATTTGAGATACAAGATGTTCTCCAATGTAAGTCAGCTATTTAAATTTGCTGTTTCATTTGTAATTTCTTGTTTTACATCTATTTATCCGTAATTTTAGCAATTTATGGTGTCTTCGAGTGAATGTTGAAGAAGTTCCATCTCTGTTATCTCCTCAGATTTATTTTTCATTATTTAGTTTTTCTGTATACTGATAAATTAAACTCTAGAGCATTTAATATATAGCTGCATTAATTCCCTTGAGATGTACCCGACAAAAATAAATTAACTTGAGATGGCCATTAAAAAGCTATAGATCTGAAGGTAATCGTAGACATGATTAGTTCTCATATTTTTGTTTCCTGGACTGCCCTAGTGGAAAGTATGAGTTCTTTAAAAGTATTCTTAAGGCTAAAATGGATACATGTTAATCATATACCACATGATGCTTTAGTTAAGATCTTTAACAGTACAAATTCTAGATTAAAGTGCACAAGAATTTTCCTTAATTGGATGTGTAACTTTAGGTTATGATGGAGATAGTTTATCATTCTATAAAGTAACGTTGTCGACCAAATTTGGGAATGTGGGGTGGGTGGATTCAGTTTCTGATTGGTTTGATAATATTCTTTCATATTGCTATCATAGGATACCTTGTGTAGCTTTATCCTAAAAAATAGAAAGGTCAAAATGGCTGCAGGCATTCTTCATTCAATCATGTTTCACAGAGCATTAGGTCTGATATATCCAAAGAATGTGGATTCGGAACTCTTTGAGATAACATATGTAAGTAATTTCTGAACTGTCAAAATACTACGTTGGTAATCTATTTATCTCTGTCTTTATTAGTATTAGGTTGGTATTTTGACTCCCCCTCCCTGCCCTCCCCATCTTCTTCCCCATTAGTAGTGTATGAATCAATTTTTTGTAGTAAAAAAGACTCTGGAACATGTTTTATTCCCAAAGAGTCTTTATTGATTCTGTATAATGTTGCTTTAAGATACTGATACTTGAGTCATGCAAAAAAAAATTTATAAAAGAAAAAATTCAATTGTGTTTTTAATAAAATGTGTACTTTTCTCTTCCCCTGAAATTTCCTAGTCCTTATAATCTTATTGTAGAATCAAATGTCTGGTTGTAAGTATCTCCATTACAATAAGTGAAATCTAGTGATGCTTAATTTGGACATAGGACTAACCCAGCATAGTTAGTTCACATAATGAAAGTGCGTGCTATCTATATACAAATTCAACATATATCTGGCATTTTTATTTCTGTCTTCTTTCCTAATTATAATTTTCTGAAAATTTTTGTGTGAAAGCTTCTGTCATTTTACCCCCTTAAAATTTTCATTTGAATGGAGTGCTAAAGCAATTATAAGATTTTGTGAACTGTGTGAGGACCATAATTAATTATGTAAGTAAGTTTCTAAAATAAGCAGAAGTTAAAAAGACTGGATGAGATTTAAGATGATACAAACTTAAATTGAAGTTAAACTGTCACCGGCTGTCAATTATGACTTATTAAAGAAAGACAAGAAGTTGGTGTATATCTAGAACTTGGGCGGCCCTTAAATTATGTCAATCTAAGGTGATCAATGTAATAAGTGATTTTTTTCTGATTTGAGTCTCCATTCCTTTCCCTTGGTGGAAGGAGGGTTTGGTTTTTCTGGCGAGCCTATTCCAAGATGTTTCCAATATTTCCTGATGGCAACTTTTAGTTTCTTCATGTTAAATTAAACAGATGCAGTGTAGTGATTTTGTAATTGAGAGGAAAGTTGATGAGAAGATTACCCAATTTATCGATAAGGTGAAGAAGCACCCCAACCAGAAACACCAGGTTCGTGATCCGAGCTTCTCTATTTGGCCAAGTGGAATACTTGCTAAATAGTCCTTGTTACTTTGTTCCTTTCACCCTTTCAACTAGTAATCTCTATTTTTCTTTACATGTGAACATTCCTCATGAGATATTTCTCATGATATCTTGTAGTCTTTTATTTTGTACTCTTTACTTCCAAAACAGGCTGTATATTACTTAGGAACTGATCACTGACCTTCTTACTCACAGACTATTTTACAACTTAATTGCTGTTGGATTTGGTAGTGGCTAACAAAACTTTCTATTGGAACATTAAAATGATGCAGATCTGTGTATCCTTCTATGAATCCAAAAACAAACAGACCTCATGGTTCACAAAGAACGTTGAACGTTGCTACTGGGAACACTGGTACATAAATTTGAGCGTGGC</genome_strand>
        <mrna_strand>GCCAAACAAGAACCACATGCACTAGGGTTAATCAAATTCGGCATTGTGAAATCATGCGTCTTCAAATTCTGGATCATCTCAACAAATACTACGAGTGGAATCATGAACTGTGAAGTTTTCAAGCTGAAAGAACTT..................................................................................GATGTGGAGCCATTTCAGATACAAGATGTTCTCCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCTTCATACAATCATGTTTCACAGAGCATCAGGTCTGATATATCCAAAGAATGTGGATTTGGAACTCTTTGAGATAACATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTGTAATGATGCTGTAATTGAGAGGAAAATTGATGAGAAGATTACCCAATTCATCGATAAGGTGAAGAAGCACCCCAACCAGAAACACCAG.................................................................................................................................................................................................................................................................................................................ATCTGTGTGTCTTTCTATGAATCCAAAAACAAACAGACCTCATGGTTCACAAAGAAAGTTGAACATCGCTACTGGGAACACTGGTATGTAAATTTGAATGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341628" ref_strand="+" ref_description="SGN-E341628 [cTOE-23-I18]">
      <seq>tttattactctctttcacattttcattctatcatcaaaagagtaaaactaagagcaatctcatttgcttttctcttcttttcttttttttaaaaaatgattcaagagctgtttgcaggaaacactacacttatcggagatgataatatttctaatattactccttcctcctctcctatttcttgtactacttctaattccaatattgcccctgcaagtgcaaatgcaaactctgaaaatcttagatgtccgcgttgtgattccccaaacaccaagttttgttactacaacaactacaatttaactcagcctcgtcatttctgcaagacttgtcgacgttattggactaaaggaggcgcgttacgcaacgttcctataggtggtggttgcagaaaaaacaagtccatcgctacatcaaaatcaactgctgcaaaattcaaaaattcacttccgtttgagtttattggaaaatcaagcatttttggagggttcgagcaggaaataataccttcaaattatgataataataacccttttctcttttcctcacctcatcagaatcataatcctattctttccttacttaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="84175" stop="85363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84475" g_stop="85063" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E341628" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84475" e_stop="85063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTACTCTCTTTCACATTTTCATTCTATCATCAAAAGAGTAAAACTAAGATCAATCTCATTTGCTTTTCTCTTCTTTTTTTTTTTTTAAAAAATGATTCAAGAGCTGTTTGCAGGAAACACTACACTTATCGGAGATGATAATATTTCTAATATTACTCCTTCCTCCTCTCCTATTTCTTGTACTACTTCTAATTCCAATATTGCCCCTGCAAGTGCAAATGCAAACTCTGAAAATCTTAGATGTCCGCGTTGTGATTCCCCAAACACCAAGTTTTGTTACTACAACAACTACAATTTAACTCAGCCTCGTCATTTCTGCAAGACTTGTCGACGTTATTGGACTAAAGGAGGCGCGTTACGCAACGTTCCTATAGGTGGTGGTTGCAGAAAAAACAAGTCCATCGCTACATCAAAATCAACTGCTGCAAAATTCAAAAATTCACTTCCGTTTGAGTTTATTGGAAAATCAGGCATTTTTGGAGGGTTCGAGCAGGAAATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGG</genome_strand>
        <mrna_strand>TTTATTACTCTCTTTCACATTTTCATTCTATCATCAAAAGAGTAAAACTAAGAGCAATCTCATTTGCTTTTCTCTTCTTTTCTTTTTTTTAAAAAATGATTCAAGAGCTGTTTGCAGGAAACACTACACTTATCGGAGATGATAATATTTCTAATATTACTCCTTCCTCCTCTCCTATTTCTTGTACTACTTCTAATTCCAATATTGCCCCTGCAAGTGCAAATGCAAACTCTGAAAATCTTAGATGTCCGCGTTGTGATTCCCCAAACACCAAGTTTTGTTACTACAACAACTACAATTTAACTCAGCCTCGTCATTTCTGCAAGACTTGTCGACGTTATTGGACTAAAGGAGGCGCGTTACGCAACGTTCCTATAGGTGGTGGTTGCAGAAAAAACAAGTCCATCGCTACATCAAAATCAACTGCTGCAAAATTCAAAAATTCACTTCCGTTTGAGTTTATTGGAAAATCAAGCATTTTTGGAGGGTTCGAGCAGGAAATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377889" ref_strand="+" ref_description="SGN-E377889 [TUS-20-D18](-)">
      <seq>aataataccttcaaattatgataataataacccttttctcttttcctcacctcatcagaatcataatcctattctttccttacttaaaggaaatcttcataaatcaattggagtgaatcaatttccttccaacaacggtatatggaaaaataattatgaagaaaacgttggtgaagtccagaatagtcgaggatttcaagagctatatcaaaggctaaaagcgtcaacaaatcgatgttatacagataatatgcatggaccatcatcatcgtcaatgattttggattcggctccggtaactggaggagagttgggttgctggaacccgaccctttcaacatggttggatctgccaacagcaaatggggcatatctttaattaataagtaatttactattttactattagggtgaagggtgcatgagatgtttgtggtatactggggatacttggacatgggtgtggcttagattttatttgtttttattctgtttttctctttgctttttgtgtgtgtttcatctataaaaatcaatgtactaaatttatttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="84674" stop="85828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84974" g_stop="85529" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E377889" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84974" e_stop="85529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCC</genome_strand>
        <mrna_strand>AATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233252" ref_strand="+" ref_description="SGN-E233252 [cLED-6-I18]">
      <seq>ataataccttcaaattatgataataataacccttttctcttttcctcacctcatcagaatcataatcctattctttccttacttaaaggaaatcttcataaatcaattggagtgaatcaatttccttccaacaacggtatatggaaaaataattatgaagaaaacgttggtgaagtccagaatagtcgaggatttcaagagctatatcaaaggctaaaagcgtcaacaaatcgatgttatacagataatatgcatggaccatcatcatcgtcaatgattttggattcggctccggtaactggaggagagttgggttgctggaacccgaccctttcaacatggttggatctgccaacagcaaatggggcatatctttaattaataagtaatttactattttactattagggtgaagggtgcatgagatgtttgtggtatactggggatacttggacatgggtgtggcttacattttatttgcttttattctgtttttctctttgctttttgtgtgtgtttcatctataaaaatcaatgtactaaatttatttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="84675" stop="85828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84975" g_stop="85529" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E233252" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84975" e_stop="85529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCC</genome_strand>
        <mrna_strand>ATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTACATTTTATTTGCTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377890" ref_strand="+" ref_description="SGN-E377890 [TUS-20-D18]">
      <seq>ataataccttcaaattatgataataataacccttttctcttttcctcacctcatcagaatcataatcctattctttccttacttaaaggaaatcttcataaatcaattggagtgaatcaatttccttccaacaacggtatatggaaaaataattatgaagaaaacgttggtgaagtccagaatagtcgaggatttcaagagctatatcaaaggctaaaagcgtcaacaaatcgatgttatacagataatatgcatggaccatcatcatcgtcaatgattttggattcggctccggtaactggaggagagttgggttgctggaacccgaccctttcaacatggttggatctgccaacagcaaatggggcatatctttaattaataagtaatttactattttactattagggtgaagggtgcatgagatgtttgtggtatactggggatacttggacatgggtgtggcttagattttatttgtttttattctgtttttctctttgctttttgtgtgtgtttcatctataaaaatcaatgtactaaatttatttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="84675" stop="85828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84975" g_stop="85529" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E377890" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84975" e_stop="85529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCC</genome_strand>
        <mrna_strand>ATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231545" ref_strand="+" ref_description="SGN-E231545 [cLED-4-L23]">
      <seq>ataataccttcaaattatgataataataacccttttctcttttcctcacctcatcagaatcataatcctattctttccttacttaaaggaaatcttcataaatcaattggagtgaatcaatttccttccaacaacggtatatggaaaaataattatgaagaaaacgttggtgaagtccagaatagtcgaggatttcaagagctatatcaaaggctaaaagcgtcaacaaatcgatgttatacagataatatgcatggaccatcatcatcgtcaatgattttggattcggctccggtaactggaggagagttgggttgctggaacccgaccctttcaacatggttggatctgccaacagcaaatggggcatatctttaattaataagtaatttactattttactattagggtgaagggtgcatgagatgtttgtggtatactggggatacttggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="84675" stop="85731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84975" g_stop="85431" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E231545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84975" e_stop="85431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACAT</genome_strand>
        <mrna_strand>ATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375110" ref_strand="+" ref_description="SGN-E375110 [TUS-36-K23](-)">
      <seq>gcgtcaacaaatcgatgttattcaggtaatatgcatgggccatcatcatcgtcaatgatttgggattcggctccggtaactggaggagagttgggttgctggaacccgtccctttcaacatggttggatctgccaacagcaaatggggcatatctttaattaataagtaatttactattttactattagggtgaagggtgcatgagatgtttgtggtatactggggatacttggacatgggtgtggcttagattttatttgtttttattctgtttttctctttgctttttgtgtgtgtttcatctataaaaatcaatgtactaaatttatttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="84894" stop="85828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85194" g_stop="85529" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E375110" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85194" e_stop="85529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCC</genome_strand>
        <mrna_strand>GCGTCAACAAATCGATGTTATTCAGGTAATATGCATGGGCCATCATCATCGTCAATGATTTGGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGTCCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422536" ref_strand="+" ref_description="SGN-E422536 [STM-40-H21]">
      <seq>aatggattatgtaggtggattgctacttgccggcactttggtcctgtgcattggttggtttgcaataggcaacaaatgtaagaagaagcttccaccaggaccatatcccctgcccttgattggaaatcttcacaacatacttggtggtcaacctcaccagtcccttgacaaacttgcccaaaagtatggcccaataatcagcctcagattgggccaaaaaaacgacagtggttatatcttcatcagccgttgctaaggaagttttacaaaagcaagatttggccttttctagcagaacaattccggatgcaatctatgccctaaatcactaccaattctctgtggtatggctaccagtcgctaatcgatggagaagccttaggaaaatcttgaattcctatatcttctccggaagcaggcttgacgccaatcaacatctcaggtccggaaagatccaagatttaattgcttattgccgtgggtttagtgaaactggtgaggcagtgaatataggacaagctgctttcgagacctctatcaatttactttcgaacaccatattttccaaggatgttgtggacccttatgcaaattcaggtaaagaattcaagggatgtggtgtccaacatcatggaagatgctggtaagcccaatttggctgattatttccccgtgtttaaagcaattgatcctcaaggaataaggcgaagagtangcaagcattttggtaagttacttcaacaatttgagggattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="89261" stop="87798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88961" g_stop="88521" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88520" i_stop="88413" i_length="108">
            <donor d_prob="0.982" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88412" g_stop="88098" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="758" r_length="316" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E422536" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88961" e_stop="88521"/>
          <exon e_start="88412" e_stop="88098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATTATGTAGGTGGATTGCTACTTGGCTGCACTTTGTTCCTGTGCATTGGTTGGTTTGCAATAAGCAAAAAATGTAACAAGAAACTTCCACCAGGACCATATCCCCTGCCATTGATTGGAAATCTTCACAACATACTTGGTGGTCAACCTCATCAGTCCCTTGACAAACTTGCACAAAAGTATGGACCAATAATCAGCCTCAGATTGGGCC-TAAAAACGACAGTGGTGATATCTTCATCAGCCGTTGCTAAACAAGTTTTACAAAAGCAAGATTTGGCCTTCTCTAGCAGAACCATTCCAGATGCAATCTATGCCCTAAATCACTACCAATTCTCCGTGGTATGGCTACCAGTCGCTAATCGATGGAGAAGCCTTAGGAAAATCTTGAATTCCTATATCTTCTCTGCCAGCAGCCTTGATGCCAATCAACATCTCAGGTCACTTGACTCAAATTTTAGTCTCCAAATCTGATAAAAAAAATTTTATATGGTTGAGTTATTCTATCGTGGGCCAATTAATTTGATTTTTGTCATCTCTGTTCTTAGGTCCGGAAAGATCCAAGATTTAATTGCTTATTGCGGTGGGTGTAGCCAAACTGGCGAGGCAGTGAATATAGAACAAGCTGCTTTCGAGACCTCTATGAATTTACTTTCCAATACCATATTTTCAAAGGATGTTGTGGATCCTTATGCAAATTCAGGTAAAGTATTCAA-GGATGTGGTGTCCAGCATCACGGAAGATGCTGGTAAGCCTAATTTGTCTGATTATTTCCCCCTGTTTAAAACAATTGATCCTCAAGGAATAAGGCGAAGAGTAGGCAAACATTTTGGTAAGTTACTTCAACAATTTGAGGGATTGAT</genome_strand>
        <mrna_strand>AATGGATTATGTAGGTGGATTGCTACTTGCCGGCACTTTGGTCCTGTGCATTGGTTGGTTTGCAATAGGCAACAAATGTAAGAAGAAGCTTCCACCAGGACCATATCCCCTGCCCTTGATTGGAAATCTTCACAACATACTTGGTGGTCAACCTCACCAGTCCCTTGACAAACTTGCCCAAAAGTATGGCCCAATAATCAGCCTCAGATTGGGCCAAAAAAACGACAGTGGTTATATCTTCATCAGCCGTTGCTAAGGAAGTTTTACAAAAGCAAGATTTGGCCTTTTCTAGCAGAACAATTCCGGATGCAATCTATGCCCTAAATCACTACCAATTCTCTGTGGTATGGCTACCAGTCGCTAATCGATGGAGAAGCCTTAGGAAAATCTTGAATTCCTATATCTTCTCCGGAAGCAGGCTTGACGCCAATCAACATCTCAG............................................................................................................GTCCGGAAAGATCCAAGATTTAATTGCTTATTGCCGTGGGTTTAGTGAAACTGGTGAGGCAGTGAATATAGGACAAGCTGCTTTCGAGACCTCTATCAATTTACTTTCGAACACCATATTTTCCAAGGATGTTGTGGACCCTTATGCAAATTCAGGTAAAGAATTCAAGGGATGTGGTGTCCAACATCATGGAAGATGCTGGTAAGCCCAATTTGGCTGATTATTTCCCCGTGTTTAAAGCAATTGATCCTCAAGGAATAAGGCGAAGAGTANGCAAGCATTTTGGTAAGTTACTTCAACAATTTGAGGGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448537" ref_strand="+" ref_description="SGN-E448537 [cSTS-3-B19]">
      <seq>aatggattatgtaggtggattgctacttgccggcactttggtcctgtgcattggttggtttgcaataggcaacaaatgtaagaagaagcttccaccaggaccatatcccctgcccttgattggaaatcttcacaacatacttggtggtcaacctcaccagtcccttgacaaacttgcccaaaagtatggcccaataatcagcctcagattgggccaaaaaaacgacagtggttatatcttcatcagccgttgctaaggaagttttacaaaagcaagatttggccttttctagcagaacaattccggatgcaatctatgccctaaatcactaccaattctctgtggtatggctaccagtcgctaatcgatggagaagccttaggaaaatcttgaattcctatatcttctccggaagcaggcttgacgccaatcaacatctcaggtccggaaagatccaagatttaattgcttattgccgtgggtttagtgaaactggtgaggcagtgaatataggacaagctgctttcgagacctctatcaatttactttcgaacaccatattttccaaggatgttgtggacccttatgcaaattcaggtaaagaattcaaggatgtgggtgtccaacatcatggaagatgcctgtaagcccaatttggctgattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="89261" stop="87889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88961" g_stop="88521" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88520" i_stop="88413" i_length="108">
            <donor d_prob="0.982" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88412" g_stop="88189" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="667" r_length="225" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E448537" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88961" e_stop="88521"/>
          <exon e_start="88412" e_stop="88189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATTATGTAGGTGGATTGCTACTTGGCTGCACTTTGTTCCTGTGCATTGGTTGGTTTGCAATAAGCAAAAAATGTAACAAGAAACTTCCACCAGGACCATATCCCCTGCCATTGATTGGAAATCTTCACAACATACTTGGTGGTCAACCTCATCAGTCCCTTGACAAACTTGCACAAAAGTATGGACCAATAATCAGCCTCAGATTGGGCC-TAAAAACGACAGTGGTGATATCTTCATCAGCCGTTGCTAAACAAGTTTTACAAAAGCAAGATTTGGCCTTCTCTAGCAGAACCATTCCAGATGCAATCTATGCCCTAAATCACTACCAATTCTCCGTGGTATGGCTACCAGTCGCTAATCGATGGAGAAGCCTTAGGAAAATCTTGAATTCCTATATCTTCTCTGCCAGCAGCCTTGATGCCAATCAACATCTCAGGTCACTTGACTCAAATTTTAGTCTCCAAATCTGATAAAAAAAATTTTATATGGTTGAGTTATTCTATCGTGGGCCAATTAATTTGATTTTTGTCATCTCTGTTCTTAGGTCCGGAAAGATCCAAGATTTAATTGCTTATTGCGGTGGGTGTAGCCAAACTGGCGAGGCAGTGAATATAGAACAAGCTGCTTTCGAGACCTCTATGAATTTACTTTCCAATACCATATTTTCAAAGGATGTTGTGGATCCTTATGCAAATTCAGGTAAAGTATTCAAGGATGT-GGTGTCCAGCATCACGGAAGATGCTGGTAAGCCTAATTTGTCTGATTATT</genome_strand>
        <mrna_strand>AATGGATTATGTAGGTGGATTGCTACTTGCCGGCACTTTGGTCCTGTGCATTGGTTGGTTTGCAATAGGCAACAAATGTAAGAAGAAGCTTCCACCAGGACCATATCCCCTGCCCTTGATTGGAAATCTTCACAACATACTTGGTGGTCAACCTCACCAGTCCCTTGACAAACTTGCCCAAAAGTATGGCCCAATAATCAGCCTCAGATTGGGCCAAAAAAACGACAGTGGTTATATCTTCATCAGCCGTTGCTAAGGAAGTTTTACAAAAGCAAGATTTGGCCTTTTCTAGCAGAACAATTCCGGATGCAATCTATGCCCTAAATCACTACCAATTCTCTGTGGTATGGCTACCAGTCGCTAATCGATGGAGAAGCCTTAGGAAAATCTTGAATTCCTATATCTTCTCCGGAAGCAGGCTTGACGCCAATCAACATCTCAG............................................................................................................GTCCGGAAAGATCCAAGATTTAATTGCTTATTGCCGTGGGTTTAGTGAAACTGGTGAGGCAGTGAATATAGGACAAGCTGCTTTCGAGACCTCTATCAATTTACTTTCGAACACCATATTTTCCAAGGATGTTGTGGACCCTTATGCAAATTCAGGTAAAGAATTCAAGGATGTGGGTGTCCAACATCATGGAAGATGCCTGTAAGCCCAATTTGGCTGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460796" ref_strand="+" ref_description="SGN-E460796 [cPRO-32-M6]">
      <seq>gcagaaaggcaatagctagttcagcgaagaagacaatggattatgtaggtggattgctacttgccggcactttggtcctgtgcattggttggtttgcaataggcaacaaatgtaagaagaagcttccaccaggaccatatcccctgcccttgattggaaatcttcacaacatacttggtggtcaacctcaccagtcccttgacaaacttgcccaaaagtatggcccaataatcagcctcagattgggccaaaaaacgacagtggttatatcttcatcagccgttgctaaggaagttttacaaaagcaagatttggccttttctagcagaacaattccggatgcaatctatgccctaaatcactaccaattctctgtggtatggctaccagtcgctaatcgatggagaagccttaagaaaatcttgaattcctatatcttctccggaagcaggcttgacgccaatcaacatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="89295" stop="88223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88995" g_stop="88523" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E460796" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88995" e_stop="88523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGGCAATAGATAGTTGAGCGAAGAAGAGAATGGATTATGTAGGTGGATTGCTACTTGGCTGCACTTTGTTCCTGTGCATTGGTTGGTTTGCAATAAGCAAAAAATGTAACAAGAAACTTCCACCAGGACCATATCCCCTGCCATTGATTGGAAATCTTCACAACATACTTGGTGGTCAACCTCATCAGTCCCTTGACAAACTTGCACAAAAGTATGGACCAATAATCAGCCTCAGATTGGGCCTAAAAACGACAGTGGTGATATCTTCATCAGCCGTTGCTAAACAAGTTTTACAAAAGCAAGATTTGGCCTTCTCTAGCAGAACCATTCCAGATGCAATCTATGCCCTAAATCACTACCAATTCTCCGTGGTATGGCTACCAGTCGCTAATCGATGGAGAAGCCTTAGGAAAATCTTGAATTCCTATATCTTCTCTGCCAGCAGCCTTGATGCCAATCAACATCTC</genome_strand>
        <mrna_strand>GCAGAAAGGCAATAGCTAGTTCAGCGAAGAAGACAATGGATTATGTAGGTGGATTGCTACTTGCCGGCACTTTGGTCCTGTGCATTGGTTGGTTTGCAATAGGCAACAAATGTAAGAAGAAGCTTCCACCAGGACCATATCCCCTGCCCTTGATTGGAAATCTTCACAACATACTTGGTGGTCAACCTCACCAGTCCCTTGACAAACTTGCCCAAAAGTATGGCCCAATAATCAGCCTCAGATTGGGCCAAAAAACGACAGTGGTTATATCTTCATCAGCCGTTGCTAAGGAAGTTTTACAAAAGCAAGATTTGGCCTTTTCTAGCAGAACAATTCCGGATGCAATCTATGCCCTAAATCACTACCAATTCTCTGTGGTATGGCTACCAGTCGCTAATCGATGGAGAAGCCTTAAGAAAATCTTGAATTCCTATATCTTCTCCGGAAGCAGGCTTGACGCCAATCAACATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702244" ref_strand="+" ref_description="SGN-E702244 [FA18AG07]">
      <seq>cttccattgattggaaatttgcataatattgttggcgatcaacctcacaagtcacttgctaggcttgcccaaatatatgggccaatgatgagcctcaggatggggcaaataactacagtggtaatatcttcatcagccgttgcaaaacaagtcttacaaaaacaagatttggccttttccagcagaacgattcctgatgcaatctgtgccaataatcaccatcagttctctgttgtgtttctaccagctgcctctcgctggagaagcctaaggaaaattttgaattctaatatgttctccagcaacaagcttgacgcaacccagcatctcaggtcccaaaggatgcaagattttattggttattgcagcaagtgtagccaaacaggcgagtcagtgaatataggcaaagctgctttcgagaccatggttaatttactttccaataccattttttctaaggatgtagtggacccttatgcaaattcaggtaaagaatttaaggatgtgatcaggagcgtcttggaggaatctggtaagcccaatttcgccgattattttcccctcttgaaaaggattgatcctcaagggataaggcgacgcacaggcaagcattttgataagctgcttcaccatattatgaagggattgatagacgaacgattggaaaaaaggaggaaatcacaaaatggcagtagaacagattttctccaagttatgttgaatactagcgaagaagatccgcaggcaatcgatagagatcatatacaacacttgtgcctggaccttttcgttgcgggaacggatacaacttcaagtacattagaatgggcaatggtagaggtcatgagaaaaccatacataatgaataaagctagaagtgagcttgcagatgttattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="94894" stop="92937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94594" g_stop="94263" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94262" i_stop="94095" i_length="168">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94094" g_stop="93647" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="780" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93646" i_stop="93357" i_length="290">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93356" g_stop="93237" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="900" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E702244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94594" e_stop="94263"/>
          <exon e_start="94094" e_stop="93647"/>
          <exon e_start="93356" e_stop="93237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATTGATTGGAAATTTGCATAATATTGTTGGCGATCAACCTCACAAGTCACTTGCTAGGCTTGCCCAAATATATGGGCCAATGATGAGCCTCAGGATGGGGCAAATAACTACAGTGGTAATATCTTCATCAGCCGTTGCAAAACAAGTCTTACAAAAACAAGATTTGGCCTTTTCCAGCAGAACGATTCCTGATGCAATCTGTGCCAATAATCACCATCAGTTCTCTGTTGTGTTTCTACCAGCTGCCTCTCGCTGGAGAAGCCTAAGGAAAATTTTGAATTCTAATATGTTCTCCAGCAACAAGCTTGACGCAACCCAGCATCTCAGGTAAAAGTGTGGGTTTAATTTGATTAAAATAAGTTAAAACTAATATACAATGATAATTAGATTCATATTGAACTTTTGAATTCAAACTCCTTGAGTCAAGTCAACAAACATGTTATTATTCACCACACGATAGGTAAAAATTGATTTTGTACGTCACGTTGATGTCAGGTCCCAAAGGATGCAAGATTTTATTGGTTATTGCAGCAAGTGTAGCCAAACAGGCGAGTCAGTGAATATAGGCAAAGCTGCTTTCGAGACCATGGTTAATTTACTTTCCAATACCATTTTTTCTAAGGATGTAGTGGACCCTTATGCAAATTCAGGTAAAGAATTTAAGGATGTGATCAGGAGCGTCTTGGAGGAATCTGGTAAGCCCAATTTCGCCGATTATTTTCCCCTCTTGAAAAGGATTGATCCTCAAGGGATAAGGCGACGCACAGGCAAGCATTTTGATAAGCTGCTTCACCATATTATGAAGGGATTGATAGACGAACGATTGGAAAAAAGGAGGAAATCACAAAATGGCAGTAGAACAGATTTTCTCCAAGTTATGTTGAATACTAGCGAAGAAGATCCGCAGGCAATCGATAGAGATCATATACAACACTTGTGCCTGGTAACTTTTTAACTTCTTCACCCTTTTCGATTAAGTTCCTTATTTACACAGCCGGATAGACCTTTTGAACAATTATTTTCGACCCGTCAGACTATTAATTCGGAAAATTATGAACCTGTAATTTCAGTTGTAATACAGTGAGTTTTTAATGCTAAAAAGATTAATTCTAGATCCTGAATTCCCATTAGGTGCTCTGTTATGCTTCATTAGTTTCCTTGTAACTTCTTCCATCATTTAAATACTTGCTATATACCTTGTTACATCCCTGAGAGTTACTATTTATATTTCAGGACCTTTTCGTTGCGGGAACGGATACAACTTCAAGTACATTAGAATGGGCAATGGTAGAGGTCATGAGAAAACCATACATAATGAATAAAGCTAGAAGTGAGCTTGCAGATGTTATTGGC</genome_strand>
        <mrna_strand>CTTCCATTGATTGGAAATTTGCATAATATTGTTGGCGATCAACCTCACAAGTCACTTGCTAGGCTTGCCCAAATATATGGGCCAATGATGAGCCTCAGGATGGGGCAAATAACTACAGTGGTAATATCTTCATCAGCCGTTGCAAAACAAGTCTTACAAAAACAAGATTTGGCCTTTTCCAGCAGAACGATTCCTGATGCAATCTGTGCCAATAATCACCATCAGTTCTCTGTTGTGTTTCTACCAGCTGCCTCTCGCTGGAGAAGCCTAAGGAAAATTTTGAATTCTAATATGTTCTCCAGCAACAAGCTTGACGCAACCCAGCATCTCAG........................................................................................................................................................................GTCCCAAAGGATGCAAGATTTTATTGGTTATTGCAGCAAGTGTAGCCAAACAGGCGAGTCAGTGAATATAGGCAAAGCTGCTTTCGAGACCATGGTTAATTTACTTTCCAATACCATTTTTTCTAAGGATGTAGTGGACCCTTATGCAAATTCAGGTAAAGAATTTAAGGATGTGATCAGGAGCGTCTTGGAGGAATCTGGTAAGCCCAATTTCGCCGATTATTTTCCCCTCTTGAAAAGGATTGATCCTCAAGGGATAAGGCGACGCACAGGCAAGCATTTTGATAAGCTGCTTCACCATATTATGAAGGGATTGATAGACGAACGATTGGAAAAAAGGAGGAAATCACAAAATGGCAGTAGAACAGATTTTCTCCAAGTTATGTTGAATACTAGCGAAGAAGATCCGCAGGCAATCGATAGAGATCATATACAACACTTGTGCCTG..................................................................................................................................................................................................................................................................................................GACCTTTTCGTTGCGGGAACGGATACAACTTCAAGTACATTAGAATGGGCAATGGTAGAGGTCATGAGAAAACCATACATAATGAATAAAGCTAGAAGTGAGCTTGCAGATGTTATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546244" ref_strand="+" ref_description="SGN-E546244 [TUS-69-I4]">
      <seq>ttaaatataagatgttggtatgaatttcttctcaactctttctcattcactagcatctgtagctgttccgttcaattcaagtccatttccttctaatactaaataatttgtcttttgaggcaaaacagggggttctctacacctagaagttctctaaatctcacatccacttgcactgtatttaatattaagagggatttanncccttctttgatgttgcattcagtctaaaatattccaattagcccattaggtggatatgatgaggggttcttgttcagtgcgtttgctctaataatcatttcttccatttatgctccttatgttatttacangcggtgtgatagtgtgataggtatatttaaaattttatttgaaatatcatgcaccaatgtgatcattaactgagtcgagtttgtggttgcactaactgtccattttacagatactcatgattcgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="108984" stop="107933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108684" g_stop="108233" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E546244" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108684" e_stop="108233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGCAGCCGTTCTGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAATCAGGGGGTACTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAAAATTAAGAGGGATTTA--CCCTTCTTTGATGTTGCATTCAGTCTAAATTATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCTTTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTCTGTTATTTACA------GTG---GTGTGATAGGTATATTTAAAATTTTATTTGAAAAATAATGCACCAATGTGATCATTAACTGAGTTGTGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGACTT</genome_strand>
        <mrna_strand>TTAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGTAGCTGTTCCGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAAACAGGGGGTTCTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAATATTAAGAGGGATTTANNCCCTTCTTTGATGTTGCATTCAGTCTAAAATATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCAGTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTATGTTATTTACANGCGGTGTGATAGTGTGATAGGTATATTTAAAATTTTATTTGAAATATCATGCACCAATGTGATCATTAACTGAGTCGAGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358554" ref_strand="+" ref_description="SGN-E358554 [cLHT-22-H17]">
      <seq>taaatataagatgttggtatgaatttcttctgaactctgtctcattcactagcatctgtagctgttccgttcaattcaagtccatttccttctaatactaaataatttgtcttttgaggcaaaacagggggttctctacacctagaagttctctaaatctcacatccacttgcactgtatttaatattaagagggatttacccttctttgatgttgcattcagtctaaaatattccaattagcccattaggtggatatgatgaggggttcttgttcagtgcgtttgctctaataatcatttcttccatttatgctccttatgttatttacagcggtgtgatagtgtgataggtatatttaaaattttatttgaaatatcatgcaccaatgtgatcattaactgagtcgagtttgtggttgcactaactgtccattttacagatactcatgattcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="-" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="108983" stop="107935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108683" g_stop="108235" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="-" ref_id="SGN-E358554" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108683" e_stop="108235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGCAGCCGTTCTGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAATCAGGGGGTACTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAAAATTAAGAGGGATTTACCCTTCTTTGATGTTGCATTCAGTCTAAATTATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCTTTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTCTGTTATTTACA-----GTG---GTGTGATAGGTATATTTAAAATTTTATTTGAAAAATAATGCACCAATGTGATCATTAACTGAGTTGTGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGAC</genome_strand>
        <mrna_strand>TAAATATAAGATGTTGGTATGAATTTCTTCTGAACTCTGTCTCATTCACTAGCATCTGTAGCTGTTCCGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAAACAGGGGGTTCTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAATATTAAGAGGGATTTACCCTTCTTTGATGTTGCATTCAGTCTAAAATATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCAGTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTATGTTATTTACAGCGGTGTGATAGTGTGATAGGTATATTTAAAATTTTATTTGAAATATCATGCACCAATGTGATCATTAACTGAGTCGAGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456396" ref_strand="+" ref_description="SGN-E456396 [cSTS-29-K24]">
      <seq>ctaccaacttatgccaccattgaatgaggcgtcttccatagcagcacttctcctcaataagtgcaacttcataaccttaatcagcaaagcacgccagctccatgccctcatcctcacttccatacccgccacctccagatctccttatgtattcaacaacattctctccatgtacgcccgatgtgggtctatccaagactcacatatcctgttcgacaaaatgcctgagataaatattgtctctttcaacgccctcatttccgcctattctcgataccaccaccttgcccattgggctttccatttgtttgctcaattgcaaagtgagagcataagaccaaatggattaacttttactagccttttaaatgtgtgttcgggtatcaagaatcaggtattaggctctatgcttcactcccagtgtataaagtttggatttttatacgatgtgtgcgttcaaacctctgttcttgggatgtacttaaattgtggagtcttggattgtgcagagaaagtgttttgctacatgcatgataaagattctgtggcttggaatactctattctttgggtatttggaaaatggtaagaccgtggaaggccttcagctgtttggcaccatgttgaggaccggnagttgttcctacgaatttcacttatacgacattggtgagtgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="110531" stop="111684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110831" g_stop="111509" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E456396" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110831" e_stop="111509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAACTTATGCCACCATTGAGTGAGGCCTCTTCCATAGCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCCATTGGACTTTCCATTTGCTTGCTCAATTGCAAAGTGAGAGCCTAAGACCAAATGGGTTAACTTTTACTAGTCTTTTAAATGCGTGTTCAGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCATTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTTTTGGATTGTGCAGAGAAAGTTTTTTGCTACATGTATGATAAAGATTCCGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTAAGACCGTGGAAGGCCTTCAGCTGTTTGGCACCATGTTGAGGACTGG-AGTTGTTCCTACGAATTTCACTTATACGACATTGTTGAGTGCTTGT</genome_strand>
        <mrna_strand>CTACCAACTTATGCCACCATTGAATGAGGCGTCTTCCATAGCAGCACTTCTCCTCAATAAGTGCAACTTCATAACCTTAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCCATACCCGCCACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCCATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGAGATAAATATTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCACCACCTTGCCCATTGGGCTTTCCATTTGTTTGCTCAATTGCAAAGTGAGAGCATAAGACCAAATGGATTAACTTTTACTAGCCTTTTAAATGTGTGTTCGGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCACTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTCTTGGATTGTGCAGAGAAAGTGTTTTGCTACATGCATGATAAAGATTCTGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTAAGACCGTGGAAGGCCTTCAGCTGTTTGGCACCATGTTGAGGACCGGNAGTTGTTCCTACGAATTTCACTTATACGACATTGGTGAGTGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426239" ref_strand="+" ref_description="SGN-E426239 [STM-46-C4]">
      <seq>ctaccaacttatgccaccattgaatgaggcgtcttccatattcagcacttctcctcaataagtgcaacttcataaccttaatcagcaaagcacgccagctccatgccctcatcctcacttccatacccgccacctccagatctccttatgtattcaacaacattctctccatgtacgcccgatgtgggtctatccaagactcacatatcctgttcgacaaaatgcctgagataaatattgtctctttcaacgccctcatttccgcctattctcgataccaccaccttgcccattgggctttccatttgtttgctcaattgcaaagtgagagcataagaccaaatggattaacttttactagccttttaaatgtgtgttcgggtatcaagaatcaggtattaggctctatgcttcactcccagtgtataaagtttggatttttatacgatgtgtgcgttcaaacctctgttcttgggatgtacttaaattgtggagtcttggattgtgcagagaaagtgttttgctacatgcatgataaagattctgtggcttggaatactctattctttgggtatttggaaaatggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="110531" stop="111684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110831" g_stop="111417" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E426239" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110831" e_stop="111417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAACTTATGCCACCATTGAGTGAGGCCTCTTCCATA-GCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCCATTGGACTTTCCATTTGCTTGCTCAATTGCAAAGTGAGAGCCTAAGACCAAATGGGTTAACTTTTACTAGTCTTTTAAATGCGTGTTCAGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCATTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTTTTGGATTGTGCAGAGAAAGTTTTTTGCTACATGTATGATAAAGATTCCGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTA</genome_strand>
        <mrna_strand>CTACCAACTTATGCCACCATTGAATGAGGCGTCTTCCATATTCAGCACTTCTCCTCAATAAGTGCAACTTCATAACCTTAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCCATACCCGCCACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCCATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGAGATAAATATTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCACCACCTTGCCCATTGGGCTTTCCATTTGTTTGCTCAATTGCAAAGTGAGAGCATAAGACCAAATGGATTAACTTTTACTAGCCTTTTAAATGTGTGTTCGGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCACTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTCTTGGATTGTGCAGAGAAAGTGTTTTGCTACATGCATGATAAAGATTCTGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449647" ref_strand="+" ref_description="SGN-E449647 [cSTS-7-I15]">
      <seq>caacttatgccaccattgaatgaggcgtcttccatagcagcacttctcctcaataagtgcaacttcataaccttaatcagcaaagcacgccagctccatgccctcatcctcacttccatacccgccacctccagatctccttatgtattcaacaacattctctccatgtacgcccgatgtgggtctatccaagactcacatatcctgttcgacaaaatgcctgagagaaatattgtctctttcaacgccctcatttccgcctattctcgataccaccaccttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0056J19-adCs9/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0056J19.1" temp_strand="+" temp_description="C02SLe0056J19.1  AC226517.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0056J19 sequenced_by:kribb upload_account_name:korea">
        <position start="110535" stop="111420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110835" g_stop="111120" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0056J19.1" gen_strand="+" ref_id="SGN-E449647" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0056J19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110835" e_stop="111120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTATGCCACCATTGAGTGAGGCCTCTTCCATAGCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCC</genome_strand>
        <mrna_strand>CAACTTATGCCACCATTGAATGAGGCGTCTTCCATAGCAGCACTTCTCCTCAATAAGTGCAACTTCATAACCTTAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCCATACCCGCCACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCCATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGAGAGAAATATTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCACCACCTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>161</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8854" PGL_stop="7235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8854" e_stop="8593"/>
            <exon e_start="8494" e_stop="8274"/>
            <exon e_start="8192" e_stop="7844"/>
            <exon e_start="7275" e_stop="7235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8854" e_stop="8593" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8592" i_stop="8495" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8494" e_stop="8274" e_length="221"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8273" i_stop="8193" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8192" e_stop="7844" e_length="349"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7843" i_stop="7276" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7275" e_stop="7235" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8854" stop="8593"/>
              <exon start="8494" stop="8284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8846" stop="8593"/>
              <exon start="8494" stop="8274"/>
              <exon start="8192" stop="8188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8846" stop="8593"/>
              <exon start="8494" stop="8274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8846" stop="8593"/>
              <exon start="8494" stop="8337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8846" stop="8593"/>
              <exon start="8494" stop="8411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8841" stop="8593"/>
              <exon start="8494" stop="8274"/>
              <exon start="8192" stop="8143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8830" stop="8593"/>
              <exon start="8494" stop="8337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8423" stop="8274"/>
              <exon start="8192" stop="7844"/>
              <exon start="7275" stop="7235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAAGTGATACAACAATTAAATATATTTTTTTTTATAAAAAAAATTATGGGTTCAAATTCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTACCCAAGTTAATTTCAGATGTTTTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAAAAAAGCTCAATCAGTTTCTTGTTCCTTTAGAAGAAGAACTCACAAAAATCGAAGCTTTTAAACGTGAATTGCCCTTGTGTATGCTTCTTCTCAAACATG : CTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAGGAGAAAGATAAAAGCCCTGTGATGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGATGAAATTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAATTGGATGAGCTCTGCTCAGCTATGGAGCACTCCAGTTCAGTATGAAAGCTTTAATCTTCAAAACTTAAAACGG : AGTGGTGTAGAAGATAAAGCCAAGGAGAAGCAATACCAGTTAGGAGCATGTAAATTGACGAGTGAAAGAGGGGCATTTTTGCCATTTCAAAGACAAGCTTTGAAGGTAGACAAAAAATGTTTGGCAGTGAAGGATTTATCTCTGTCAATGGCAGTGACAGTGGGTGAAGGAGAAAACCGTGAAAATCCAATTGATGTGAGTGTCAAAAGAGAGAACGGCCCATCAAATTCAAATGGGTGTGATGGTTTTTCACATGACAAATCACTACAGAGGAAACAGAGGCGTTGTTGGTCTCCAGAATTGCATCGCAGATTTGTTGATGCTCTTCATCAACTTGGAGGTCCACAAG : TGGCTACACCAAAACAGATCAGAGATATCATGCAAGTGGAT</gDNA_template>
            <first_frame> E  K  V  I  Q  Q  L  N  I  F  F  F  I  K  K  I  M  G  S  N  S  K  E  M  N  I  D  L  N  F  V  Y  V  P  K  L  I  S  D  V  L  T  E  V  S  A  M  D  D  I  S  K  K  L  K  K  L  N  Q  F  L  V  P  L  E  E  E  L  T  K  I  E  A  F  K  R  E  L  P  L  C  M  L  L  L  K  H   : A  I  E  R  L  K  A  E  A  L  L  Y  K  E  K  D  K  S  P  V  M  M  E  E  F  I  P  L  K  K  G  N  S  D  E  I  G  R  V  K  K  S  N  D  L  S  D  K  K  N  W  M  S  S  A  Q  L  W  S  T  P  V  Q  Y  E  S  F  N  L  Q  N  L  K  R  :  S  G  V  E  D  K  A  K  E  K  Q  Y  Q  L  G  A  C  K  L  T  S  E  R  G  A  F  L  P  F  Q  R  Q  A  L  K  V  D  K  K  C  L  A  V  K  D  L  S  L  S  M  A  V  T  V  G  E  G  E  N  R  E  N  P  I  D  V  S  V  K  R  E  N  G  P  S  N  S  N  G  C  D  G  F  S  H  D  K  S  L  Q  R  K  Q  R  R  C  W  S  P  E  L  H  R  R  F  V  D  A  L  H  Q  L  G  G  P  Q   : V  A  T  P  K  Q  I  R  D  I  M  Q  V  D </first_frame>
            <second_frame>  R  K  *  Y  N  N  *  I  Y  F  F  L  *  K  K  L  W  V  Q  I  L  K  K  *  T  L  I  *  I  L  F  M  Y  P  S  *  F  Q  M  F  *  L  K  F  L  P  W  M  T  S  P  R  N  *  K  S  S  I  S  F  L  F  L  *  K  K  N  S  Q  K  S  K  L  L  N  V  N  C  P  C  V  C  F  F  S  N  M  :  L  L  R  D  *  R  Q  K  L  C  C  I  R  R  K  I  K  A  L  *  *  W  R  N  S  S  H  *  R  R  V  I  L  M  K  L  E  G  *  K  S  Q  M  I  *  V  I  R  K  I  G  *  A  L  L  S  Y  G  A  L  Q  F  S  M  K  A  L  I  F  K  T  *  N  G :   V  V  *  K  I  K  P  R  R  S  N  T  S  *  E  H  V  N  *  R  V  K  E  G  H  F  C  H  F  K  D  K  L  *  R  *  T  K  N  V  W  Q  *  R  I  Y  L  C  Q  W  Q  *  Q  W  V  K  E  K  T  V  K  I  Q  L  M  *  V  S  K  E  R  T  A  H  Q  I  Q  M  G  V  M  V  F  H  M  T  N  H  Y  R  G  N  R  G  V  V  G  L  Q  N  C  I  A  D  L  L  M  L  F  I  N  L  E  V  H  K  :  W  L  H  Q  N  R  S  E  I  S  C  K  W   </second_frame>
            <third_frame>   E  S  D  T  T  I  K  Y  I  F  F  Y  K  K  N  Y  G  F  K  F  *  R  N  E  H  *  F  E  F  C  L  C  T  Q  V  N  F  R  C  F  N  *  S  F  C  H  G  *  H  L  Q  E  I  K  K  A  Q  S  V  S  C  S  F  R  R  R  T  H  K  N  R  S  F  *  T  *  I  A  L  V  Y  A  S  S  Q  T  C :   Y  *  E  I  K  G  R  S  F  A  V  *  G  E  R  *  K  P  C  D  D  G  G  I  H  P  T  E  E  G  *  F  *  *  N  W  K  G  K  K  V  K  *  F  K  *  *  E  K  L  D  E  L  C  S  A  M  E  H  S  S  S  V  *  K  L  *  S  S  K  L  K  T   : E  W  C  R  R  *  S  Q  G  E  A  I  P  V  R  S  M  *  I  D  E  *  K  R  G  I  F  A  I  S  K  T  S  F  E  G  R  Q  K  M  F  G  S  E  G  F  I  S  V  N  G  S  D  S  G  *  R  R  K  P  *  K  S  N  *  C  E  C  Q  K  R  E  R  P  I  K  F  K  W  V  *  W  F  F  T  *  Q  I  T  T  E  E  T  E  A  L  L  V  S  R  I  A  S  Q  I  C  *  C  S  S  S  T  W  R  S  T  S :   G  Y  T  K  T  D  Q  R  Y  H  A  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8854" stop="8593"/>
                    <exon start="8494" stop="8274"/>
                    <exon start="8192" stop="7844"/>
                    <exon start="7275" stop="7235"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKVIQQLNIFFFIKKIMGSNSKEMNIDLNFVYVPKLISDVLTEVSAMDDISKKLKKLNQFLVPLEEELTKIEAFKRELPLCMLLLKHAIERLKAEALLYKEKDKSPVMMEEFIPLKKGNSDEIGRVKKSNDLSDKKNWMSSAQLWSTPVQYESFNLQNLKRSGVEDKAKEKQYQLGACKLTSERGAFLPFQRQALKVDKKCLAVKDLSLSMAVTVGEGENRENPIDVSVKRENGPSNSNGCDGFSHDKSLQRKQRRCWSPELHRRFVDALHQLGGPQVATPKQIRDIMQVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25354" PGL_stop="30967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25354" e_stop="25852"/>
            <exon e_start="27612" e_stop="27686"/>
            <exon e_start="27766" e_stop="27867"/>
            <exon e_start="27950" e_stop="28003"/>
            <exon e_start="28097" e_stop="28189"/>
            <exon e_start="28299" e_stop="28391"/>
            <exon e_start="29605" e_stop="29709"/>
            <exon e_start="29797" e_stop="29895"/>
            <exon e_start="30337" e_stop="30967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="0.989"/>
          <exon-intron don_prob="0.945" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.283" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.789" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="25354" e_stop="25852" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27612" e_stop="27686" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27766" e_stop="27867" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.933" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27950" e_stop="28003" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.283">
            <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28097" e_stop="28189" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28299" e_stop="28391" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29605" e_stop="29709" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29895" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.823" acc_prob="0.789">
            <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30967" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25354" stop="25817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25421" stop="25852"/>
              <exon start="27612" stop="27647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25422" stop="25852"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25423" stop="25852"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25425" stop="25852"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25425" stop="25852"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25461" stop="25852"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25532" stop="25852"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25536" stop="25852"/>
              <exon start="27612" stop="27648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25852"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27668" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27767" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27998" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28110" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29637" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29850" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30567" stop="30967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAAAGAGATTATTAATAATTAAATAAACAGAAGATATTTTCATTACTTTGCCGACCATACATAAAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAG : ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAG : GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAG : GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG : CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG : TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG : ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT : AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG : AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</gDNA_template>
            <first_frame> R  E  K  E  I  I  N  N  *  I  N  R  R  Y  F  H  Y  F  A  D  H  T  *  N  I  F  P  Q  K  L  H  Y  R  K  K  G  Q  K  V  R  K  N  P  P  P  L  S  S  I  S  S  H  I  P  S  Y  L  R  L  K  L  T  Y  H  Y  S  V  L  C  V  G  W  S  T  G  S  I  Q  L  R  S  P  V  P  V  T  G  N  H  W  *  E  S  F  G  M  *  I  E  L  S  L  S  *  I  *  G  S  R  R  N  G  S  R  S  G  T  V  Y  G  Y  A  D  H  A  R  *  *  P  V  R  F  C  *  R  Y  R  V  G  *  L  W  R  C  E  V  D  D  R  *  A  D  *  R  A  S  C  C  Q  V  H  R  K  R  R  *   : D  R  *  K  R  S  A  G  D  N  Q  S  Q  V  A  E  A  S  *  H  N  *  V  Q  R   : G  D  S  D  A  N  S  S  R  Y  C  D  G  V  C  I  W  W  G  A  F  *  E  N  L  *  C  G  A  L  Q  *  G  *   : G  S  L  L  L  P  A  T  Y  I  W  C  Q  L  L  S  L  H   : A  S  M  S  S  G  L  E  A  G  K  Y  V  A  *  W  K  P  C  S  S  A  K  N  L  *  F  W  V  F  Q   : V  C  S  A  A  F  T  A  K  I  N  C  G  N  T  C  I  Y  C  T  R  S  F  V  E  E  R  I  R  W  Q   : D  C  R  C  L  V  V  W  S  D  I  V  C  H  V  S  G  C  L  P  F  *  G  S  *  *  T  K  R  F  S  E  D  D  Q   : *  D  P  E  R  A  V  F  C  S  *  E  H  S  D  I  *  G  M  S  P  L  N  L  K  D  L  C  W  R  S  G  T   : E  D  H  N  A  *  N  Q  E  S  C  M  V  F  E  E  S  S  S  G  L  N  R  R  *  D  D  *  *  S  V  *  R  T  R  S  T  N  A  E  H  *  Y  D  H  A  N  N  L  R  G  N  S  T  T  N  W  L  V  *  L  G  N  D  G  R  *  H  G  *  L  G  F  R  A  *  S  *  Y  *  *  Q  R  G  D  H  I  C  N  V  S  A  C  Q  A  C  E  K  E  G  V  S  T  I  L  E  H  F  W  T  C  W  C  A  R  L  R  D  C  *  S  S  V  T  *  K  W  G  I  Y  N  V  C  N  *  S  S  S  Y  P  E  R  G  F  *  S  A  H  E  L  F  L  L  L  P  *  E  E  L  A  E  K  V  M  E  F  P  Y  L  S  S  *  S  L  Y  N  V  I  Q  C  C  S  F  V  T  L  Y  F  L  I  C  V  C  V  K  T  N  Y  V  L  F  L  V  F  V  S  *  D  A  *   </first_frame>
            <second_frame>  E  R  K  R  L  L  I  I  K  *  T  E  D  I  F  I  T  L  P  T  I  H  K  I  S  F  P  K  N  F  I  T  G  K  K  V  K  K  Y  E  K  T  H  R  L  Y  P  P  F  L  H  I  Y  L  L  I  *  G  *  N  *  L  I  T  T  R  F  F  V  L  V  G  Q  P  V  V  F  S  S  D  H  Q  F  R  *  L  V  T  I  G  E  K  A  L  G  C  K  S  S  L  V  *  A  E  S  E  V  A  D  E  M  D  R  G  P  G  P  C  M  D  M  P  I  M  H  D  S  D  R  Y  D  F  V  R  D  I  G  S  G  N  F  G  V  A  R  L  M  T  D  K  Q  T  K  E  L  V  A  V  K  Y  I  E  R  G  D  K  :  I  D  E  N  V  Q  R  E  I  I  N  H  R  S  L  R  H  P  N  I  I  R  F  K  E  :  V  I  L  T  P  T  H  L  A  I  V  M  E  Y  A  S  G  G  E  L  F  E  R  I  S  N  A  G  R  F  N  E  D  E  :  A  R  F  F  F  Q  Q  L  I  S  G  V  S  Y  C  H  S  M  :  Q  V  C  H  R  D  L  K  L  E  N  T  L  L  D  G  S  P  A  P  R  L  K  I  C  D  F  G  Y  S  K  :  S  A  L  L  H  S  Q  P  K  S  T  V  G  T  P  A  Y  I  A  P  E  V  L  L  R  K  E  Y  D  G  K  :  I  A  D  V  W  S  C  G  V  T  L  Y  V  M  L  V  G  A  Y  P  F  E  D  P  D  E  P  K  D  F  R  K  T  I  N  :  R  I  L  S  V  Q  Y  S  V  P  E  N  I  Q  I  S  E  E  C  R  H  L  I  S  R  I  F  V  G  D  P  A  Q  :  R  I  T  M  P  E  I  R  N  H  V  W  F  L  K  N  L  P  A  D  L  I  D  D  R  M  I  S  D  Q  F  E  E  P  D  Q  P  M  Q  S  I  D  T  I  M  Q  I  I  S  E  A  T  V  P  P  I  G  L  Y  N  L  E  M  M  D  D  D  M  D  D  L  D  S  E  P  D  L  D  I  D  S  S  G  E  I  I  Y  A  M  *  V  H  A  K  L  V  K  R  K  V  Y  P  Q  S  *  N  I  S  G  L  V  G  V  Q  G  L  E  I  V  E  A  Q  *  H  E  N  G  V  F  T  M  F  V  I  S  Q  V  L  I  L  K  G  A  F  S  L  P  M  N  Y  F  F  Y  Y  H  R  R  N  W  L  K  K  *  W  S  F  H  T  *  V  H  N  L  F  I  M  S  Y  S  V  V  L  L  *  L  C  T  F  L  Y  A  F  V  S  K  Q  I  M  C  S  F  W  F  L  *  V  K  M  L  N  </second_frame>
            <third_frame>   R  E  R  D  Y  *  *  L  N  K  Q  K  I  F  S  L  L  C  R  P  Y  I  K  Y  L  S  P  K  T  S  L  P  E  K  R  S  K  S  T  K  K  P  T  A  F  I  L  H  F  F  T  Y  T  F  L  S  E  A  K  I  D  L  S  L  L  G  S  L  C  W  L  V  N  R  *  Y  S  A  P  I  T  S  S  G  N  W  *  P  L  V  R  K  L  W  D  V  N  R  A  *  F  E  L  N  L  R  *  Q  T  K  W  I  E  V  R  D  R  V  W  I  C  R  S  C  T  I  V  T  G  T  I  L  L  E  I  S  G  R  V  T  L  A  L  R  G  *  *  Q  I  S  R  L  K  S  *  L  L  S  S  T  S  K  E  A  I  R :   *  M  K  T  F  S  G  R  *  S  I  T  G  R  *  G  I  L  T  *  L  G  S  K  R :   *  F  *  R  Q  L  I  S  L  L  *  W  S  M  H  L  V  G  S  F  L  R  E  S  L  M  R  G  A  S  M  R  M  R :   L  A  S  S  S  S  N  L  Y  L  V  S  A  T  V  T  P  C :   K  Y  V  I  G  T  *  S  W  K  I  R  C  L  M  E  A  L  L  L  G  *  K  F  V  I  L  G  I  P  S :   L  L  C  C  I  H  S  Q  N  Q  L  W  E  H  L  H  I  L  H  Q  K  F  C  *  G  K  N  T  M  A  R :   L  Q  M  S  G  R  V  E  *  H  C  M  S  C  *  W  V  L  T  L  L  R  I  L  M  N  Q  K  I  F  G  R  R  S  I :   G  S  *  A  C  S  I  L  F  L  R  T  F  R  Y  L  R  N  V  A  T  *  S  Q  G  S  L  L  E  I  R  H  R :   G  S  Q  C  L  K  S  G  I  M  Y  G  F  *  R  I  F  Q  R  T  *  *  T  I  G  *  L  V  I  S  L  K  N  P  I  N  Q  C  R  A  L  I  R  S  C  K  *  S  Q  R  Q  Q  Y  H  Q  L  A  C  I  T  W  K  *  W  T  M  T  W  M  T  W  I  Q  S  L  I  L  I  L  I  A  A  G  R  S  Y  M  Q  C  E  C  M  P  S  L  *  K  G  R  C  I  H  N  L  R  T  F  L  D  L  L  V  C  K  A  *  R  L  L  K  L  S  N  M  K  M  G  Y  L  Q  C  L  *  L  V  K  F  L  S  *  K  G  L  L  V  C  P  *  I  I  S  S  I  T  I  G  G  I  G  *  K  S  N  G  V  S  I  L  E  F  I  I  S  L  *  C  H  T  V  L  F  F  C  N  S  V  L  S  Y  M  R  L  C  Q  N  K  L  C  A  L  S  G  F  C  K  L  R  C  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25661" stop="25852"/>
                    <exon start="27612" stop="27686"/>
                    <exon start="27766" stop="27867"/>
                    <exon start="27950" stop="28003"/>
                    <exon start="28097" stop="28189"/>
                    <exon start="28299" stop="28391"/>
                    <exon start="29605" stop="29709"/>
                    <exon start="29797" stop="29895"/>
                    <exon start="30337" stop="30606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AESEVADEMDRGPGPCMDMPIMHDSDRYDFVRDIGSGNFGVARLMTDKQTKELVAVKYIERGDKIDENVQREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERISNAGRFNEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLLRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKDFRKTINRILSVQYSVPENIQISEECRHLISRIFVGDPAQRITMPEIRNHVWFLKNLPADLIDDRMISDQFEEPDQPMQSIDTIMQIISEATVPPIGLYNLEMMDDDMDDLDSEPDLDIDSSGEIIYAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25423" stop="25626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIFPQKLHYRKKGQKVRKNPPPLSSISSHIPSYLRLKLTYHYSVLCVGWSTGSIQLRSPVPVTGNHW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25354" e_stop="25852"/>
            <exon e_start="27612" e_stop="27867"/>
            <exon e_start="27950" e_stop="28003"/>
            <exon e_start="28097" e_stop="28189"/>
            <exon e_start="28299" e_stop="28391"/>
            <exon e_start="29605" e_stop="29709"/>
            <exon e_start="29797" e_stop="29895"/>
            <exon e_start="30337" e_stop="30967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="0.989"/>
          <exon-intron don_prob="0.933" acc_prob="0.000" e_score="0.948"/>
          <exon-intron don_prob="0.963" acc_prob="0.283" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.789" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="25354" e_stop="25852" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="25853" i_stop="27611" i_length="1759"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="27612" e_stop="27867" e_length="256"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27950" e_stop="28003" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.283">
            <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28097" e_stop="28189" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28299" e_stop="28391" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29605" e_stop="29709" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29895" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.823" acc_prob="0.789">
            <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30967" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25354" stop="25817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25421" stop="25852"/>
              <exon start="27612" stop="27765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25421" stop="25852"/>
              <exon start="27612" stop="27647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25423" stop="25852"/>
              <exon start="27612" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25428" stop="25852"/>
              <exon start="27612" stop="27742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25428" stop="25852"/>
              <exon start="27612" stop="27708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25536" stop="25852"/>
              <exon start="27612" stop="27648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27767" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27998" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28110" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29637" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29850" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30567" stop="30967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAAAGAGATTATTAATAATTAAATAAACAGAAGATATTTTCATTACTTTGCCGACCATACATAAAATATCTTTCCCCAAAAACTTCATTACCGGAAAAAAGGTCAAAAAGTACGAAAAAACCCACCGCCTTTATCCTCCATTTCTTCACATATACCTTCTTATCTGAGGCTAAAATTGACTTATCACTACTCGGTTCTTTGTGTTGGTTGGTCAACCGGTAGTATTCAGCTCCGATCACCAGTTCCGGTAACTGGTAACCATTGGTGAGAAAGCTTTGGGATGTAAATCGAGCTTAGTTTGAGCTGAATCTGAGGTAGCAGACGAAATGGATCGAGGTCCGGGACCGTGTATGGATATGCCGATCATGCACGATAGTGACCGGTACGATTTTGTTAGAGATATCGGGTCGGGTAACTTTGGCGTTGCGAGGTTGATGACAGATAAGCAGACTAAAGAGCTAGTTGCTGTCAAGTACATCGAAAGAGGCGATAAG : ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAGGTTTGCCATTGACTACCCCTTTAGATCCTAGATAGGTGGTTATACTTGTATGACTGGTTTGCTTAAAATTTCACGCTAGGTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAG : GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG : CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG : TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG : ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT : AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG : AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</gDNA_template>
            <first_frame> R  E  K  E  I  I  N  N  *  I  N  R  R  Y  F  H  Y  F  A  D  H  T  *  N  I  F  P  Q  K  L  H  Y  R  K  K  G  Q  K  V  R  K  N  P  P  P  L  S  S  I  S  S  H  I  P  S  Y  L  R  L  K  L  T  Y  H  Y  S  V  L  C  V  G  W  S  T  G  S  I  Q  L  R  S  P  V  P  V  T  G  N  H  W  *  E  S  F  G  M  *  I  E  L  S  L  S  *  I  *  G  S  R  R  N  G  S  R  S  G  T  V  Y  G  Y  A  D  H  A  R  *  *  P  V  R  F  C  *  R  Y  R  V  G  *  L  W  R  C  E  V  D  D  R  *  A  D  *  R  A  S  C  C  Q  V  H  R  K  R  R  *   : D  R  *  K  R  S  A  G  D  N  Q  S  Q  V  A  E  A  S  *  H  N  *  V  Q  R  G  L  P  L  T  T  P  L  D  P  R  *  V  V  I  L  V  *  L  V  C  L  K  F  H  A  R  *  F  *  R  Q  L  I  S  L  L  *  W  S  M  H  L  V  G  S  F  L  R  E  S  L  M  R  G  A  S  M  R  M  R :   L  A  S  S  S  S  N  L  Y  L  V  S  A  T  V  T  P  C :   K  Y  V  I  G  T  *  S  W  K  I  R  C  L  M  E  A  L  L  L  G  *  K  F  V  I  L  G  I  P  S :   L  L  C  C  I  H  S  Q  N  Q  L  W  E  H  L  H  I  L  H  Q  K  F  C  *  G  K  N  T  M  A  R :   L  Q  M  S  G  R  V  E  *  H  C  M  S  C  *  W  V  L  T  L  L  R  I  L  M  N  Q  K  I  F  G  R  R  S  I :   G  S  *  A  C  S  I  L  F  L  R  T  F  R  Y  L  R  N  V  A  T  *  S  Q  G  S  L  L  E  I  R  H  R :   G  S  Q  C  L  K  S  G  I  M  Y  G  F  *  R  I  F  Q  R  T  *  *  T  I  G  *  L  V  I  S  L  K  N  P  I  N  Q  C  R  A  L  I  R  S  C  K  *  S  Q  R  Q  Q  Y  H  Q  L  A  C  I  T  W  K  *  W  T  M  T  W  M  T  W  I  Q  S  L  I  L  I  L  I  A  A  G  R  S  Y  M  Q  C  E  C  M  P  S  L  *  K  G  R  C  I  H  N  L  R  T  F  L  D  L  L  V  C  K  A  *  R  L  L  K  L  S  N  M  K  M  G  Y  L  Q  C  L  *  L  V  K  F  L  S  *  K  G  L  L  V  C  P  *  I  I  S  S  I  T  I  G  G  I  G  *  K  S  N  G  V  S  I  L  E  F  I  I  S  L  *  C  H  T  V  L  F  F  C  N  S  V  L  S  Y  M  R  L  C  Q  N  K  L  C  A  L  S  G  F  C  K  L  R  C  L  I </first_frame>
            <second_frame>  E  R  K  R  L  L  I  I  K  *  T  E  D  I  F  I  T  L  P  T  I  H  K  I  S  F  P  K  N  F  I  T  G  K  K  V  K  K  Y  E  K  T  H  R  L  Y  P  P  F  L  H  I  Y  L  L  I  *  G  *  N  *  L  I  T  T  R  F  F  V  L  V  G  Q  P  V  V  F  S  S  D  H  Q  F  R  *  L  V  T  I  G  E  K  A  L  G  C  K  S  S  L  V  *  A  E  S  E  V  A  D  E  M  D  R  G  P  G  P  C  M  D  M  P  I  M  H  D  S  D  R  Y  D  F  V  R  D  I  G  S  G  N  F  G  V  A  R  L  M  T  D  K  Q  T  K  E  L  V  A  V  K  Y  I  E  R  G  D  K  :  I  D  E  N  V  Q  R  E  I  I  N  H  R  S  L  R  H  P  N  I  I  R  F  K  E  V  C  H  *  L  P  L  *  I  L  D  R  W  L  Y  L  Y  D  W  F  A  *  N  F  T  L  G  D  S  D  A  N  S  S  R  Y  C  D  G  V  C  I  W  W  G  A  F  *  E  N  L  *  C  G  A  L  Q  *  G  *   : G  S  L  L  L  P  A  T  Y  I  W  C  Q  L  L  S  L  H   : A  S  M  S  S  G  L  E  A  G  K  Y  V  A  *  W  K  P  C  S  S  A  K  N  L  *  F  W  V  F  Q   : V  C  S  A  A  F  T  A  K  I  N  C  G  N  T  C  I  Y  C  T  R  S  F  V  E  E  R  I  R  W  Q   : D  C  R  C  L  V  V  W  S  D  I  V  C  H  V  S  G  C  L  P  F  *  G  S  *  *  T  K  R  F  S  E  D  D  Q   : *  D  P  E  R  A  V  F  C  S  *  E  H  S  D  I  *  G  M  S  P  L  N  L  K  D  L  C  W  R  S  G  T   : E  D  H  N  A  *  N  Q  E  S  C  M  V  F  E  E  S  S  S  G  L  N  R  R  *  D  D  *  *  S  V  *  R  T  R  S  T  N  A  E  H  *  Y  D  H  A  N  N  L  R  G  N  S  T  T  N  W  L  V  *  L  G  N  D  G  R  *  H  G  *  L  G  F  R  A  *  S  *  Y  *  *  Q  R  G  D  H  I  C  N  V  S  A  C  Q  A  C  E  K  E  G  V  S  T  I  L  E  H  F  W  T  C  W  C  A  R  L  R  D  C  *  S  S  V  T  *  K  W  G  I  Y  N  V  C  N  *  S  S  S  Y  P  E  R  G  F  *  S  A  H  E  L  F  L  L  L  P  *  E  E  L  A  E  K  V  M  E  F  P  Y  L  S  S  *  S  L  Y  N  V  I  Q  C  C  S  F  V  T  L  Y  F  L  I  C  V  C  V  K  T  N  Y  V  L  F  L  V  F  V  S  *  D  A  *   </second_frame>
            <third_frame>   R  E  R  D  Y  *  *  L  N  K  Q  K  I  F  S  L  L  C  R  P  Y  I  K  Y  L  S  P  K  T  S  L  P  E  K  R  S  K  S  T  K  K  P  T  A  F  I  L  H  F  F  T  Y  T  F  L  S  E  A  K  I  D  L  S  L  L  G  S  L  C  W  L  V  N  R  *  Y  S  A  P  I  T  S  S  G  N  W  *  P  L  V  R  K  L  W  D  V  N  R  A  *  F  E  L  N  L  R  *  Q  T  K  W  I  E  V  R  D  R  V  W  I  C  R  S  C  T  I  V  T  G  T  I  L  L  E  I  S  G  R  V  T  L  A  L  R  G  *  *  Q  I  S  R  L  K  S  *  L  L  S  S  T  S  K  E  A  I  R :   *  M  K  T  F  S  G  R  *  S  I  T  G  R  *  G  I  L  T  *  L  G  S  K  R  F  A  I  D  Y  P  F  R  S  *  I  G  G  Y  T  C  M  T  G  L  L  K  I  S  R  *  V  I  L  T  P  T  H  L  A  I  V  M  E  Y  A  S  G  G  E  L  F  E  R  I  S  N  A  G  R  F  N  E  D  E  :  A  R  F  F  F  Q  Q  L  I  S  G  V  S  Y  C  H  S  M  :  Q  V  C  H  R  D  L  K  L  E  N  T  L  L  D  G  S  P  A  P  R  L  K  I  C  D  F  G  Y  S  K  :  S  A  L  L  H  S  Q  P  K  S  T  V  G  T  P  A  Y  I  A  P  E  V  L  L  R  K  E  Y  D  G  K  :  I  A  D  V  W  S  C  G  V  T  L  Y  V  M  L  V  G  A  Y  P  F  E  D  P  D  E  P  K  D  F  R  K  T  I  N  :  R  I  L  S  V  Q  Y  S  V  P  E  N  I  Q  I  S  E  E  C  R  H  L  I  S  R  I  F  V  G  D  P  A  Q  :  R  I  T  M  P  E  I  R  N  H  V  W  F  L  K  N  L  P  A  D  L  I  D  D  R  M  I  S  D  Q  F  E  E  P  D  Q  P  M  Q  S  I  D  T  I  M  Q  I  I  S  E  A  T  V  P  P  I  G  L  Y  N  L  E  M  M  D  D  D  M  D  D  L  D  S  E  P  D  L  D  I  D  S  S  G  E  I  I  Y  A  M  *  V  H  A  K  L  V  K  R  K  V  Y  P  Q  S  *  N  I  S  G  L  V  G  V  Q  G  L  E  I  V  E  A  Q  *  H  E  N  G  V  F  T  M  F  V  I  S  Q  V  L  I  L  K  G  A  F  S  L  P  M  N  Y  F  F  Y  Y  H  R  R  N  W  L  K  K  *  W  S  F  H  T  *  V  H  N  L  F  I  M  S  Y  S  V  V  L  L  *  L  C  T  F  L  Y  A  F  V  S  K  Q  I  M  C  S  F  W  F  L  *  V  K  M  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27766" stop="27867"/>
                    <exon start="27950" stop="28003"/>
                    <exon start="28097" stop="28189"/>
                    <exon start="28299" stop="28391"/>
                    <exon start="29605" stop="29709"/>
                    <exon start="29797" stop="29895"/>
                    <exon start="30337" stop="30606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VILTPTHLAIVMEYASGGELFERISNAGRFNEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLLRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKDFRKTINRILSVQYSVPENIQISEECRHLISRIFVGDPAQRITMPEIRNHVWFLKNLPADLIDDRMISDQFEEPDQPMQSIDTIMQIISEATVPPIGLYNLEMMDDDMDDLDSEPDLDIDSSGEIIYAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25661" stop="25852"/>
                    <exon start="27612" stop="27698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AESEVADEMDRGPGPCMDMPIMHDSDRYDFVRDIGSGNFGVARLMTDKQTKELVAVKYIERGDKIDENVQREIINHRSLRHPNIIRFKEVCH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25423" stop="25626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIFPQKLHYRKKGQKVRKNPPPLSSISSHIPSYLRLKLTYHYSVLCVGWSTGSIQLRSPVPVTGNHW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="27346" e_stop="27542"/>
            <exon e_start="27612" e_stop="27686"/>
            <exon e_start="27766" e_stop="27867"/>
            <exon e_start="27950" e_stop="28003"/>
            <exon e_start="28097" e_stop="28189"/>
            <exon e_start="28299" e_stop="28391"/>
            <exon e_start="29605" e_stop="29709"/>
            <exon e_start="29797" e_stop="29895"/>
            <exon e_start="30337" e_stop="30967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="0.964"/>
          <exon-intron don_prob="0.945" acc_prob="0.987" e_score="0.960"/>
          <exon-intron don_prob="0.933" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.283" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.789" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="27346" e_stop="27542" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="27543" i_stop="27611" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="27612" e_stop="27686" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27766" e_stop="27867" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.933" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27950" e_stop="28003" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.283">
            <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28097" e_stop="28189" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28299" e_stop="28391" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29605" e_stop="29709" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29895" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.823" acc_prob="0.789">
            <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30967" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27346" stop="27542"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27668" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27767" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27998" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28110" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29637" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29850" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30567" stop="30967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAACAAAATAACAATAATGAAATATGTAAACAAATAAAACCACAAGTATTGATGAAACTTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAA : ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAG : GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAG : GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG : CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG : TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG : ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT : AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG : AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</gDNA_template>
            <first_frame> C  N  K  I  T  I  M  K  Y  V  N  K  *  N  H  K  Y  *  *  N  F  V  L  D  C  T  P  I  L  K  C  D  M  V  Y  C  L  Q  L  *  T  F  K  W  S  N  C  *  S  L  P  S  T  H  *  M  K  G  S  I  Q  Q  Y  D  D  K :   *  M  K  T  F  S  G  R  *  S  I  T  G  R  *  G  I  L  T  *  L  G  S  K  R :   *  F  *  R  Q  L  I  S  L  L  *  W  S  M  H  L  V  G  S  F  L  R  E  S  L  M  R  G  A  S  M  R  M  R :   L  A  S  S  S  S  N  L  Y  L  V  S  A  T  V  T  P  C :   K  Y  V  I  G  T  *  S  W  K  I  R  C  L  M  E  A  L  L  L  G  *  K  F  V  I  L  G  I  P  S :   L  L  C  C  I  H  S  Q  N  Q  L  W  E  H  L  H  I  L  H  Q  K  F  C  *  G  K  N  T  M  A  R :   L  Q  M  S  G  R  V  E  *  H  C  M  S  C  *  W  V  L  T  L  L  R  I  L  M  N  Q  K  I  F  G  R  R  S  I :   G  S  *  A  C  S  I  L  F  L  R  T  F  R  Y  L  R  N  V  A  T  *  S  Q  G  S  L  L  E  I  R  H  R :   G  S  Q  C  L  K  S  G  I  M  Y  G  F  *  R  I  F  Q  R  T  *  *  T  I  G  *  L  V  I  S  L  K  N  P  I  N  Q  C  R  A  L  I  R  S  C  K  *  S  Q  R  Q  Q  Y  H  Q  L  A  C  I  T  W  K  *  W  T  M  T  W  M  T  W  I  Q  S  L  I  L  I  L  I  A  A  G  R  S  Y  M  Q  C  E  C  M  P  S  L  *  K  G  R  C  I  H  N  L  R  T  F  L  D  L  L  V  C  K  A  *  R  L  L  K  L  S  N  M  K  M  G  Y  L  Q  C  L  *  L  V  K  F  L  S  *  K  G  L  L  V  C  P  *  I  I  S  S  I  T  I  G  G  I  G  *  K  S  N  G  V  S  I  L  E  F  I  I  S  L  *  C  H  T  V  L  F  F  C  N  S  V  L  S  Y  M  R  L  C  Q  N  K  L  C  A  L  S  G  F  C  K  L  R  C  L  I </first_frame>
            <second_frame>  A  T  K  *  Q  *  *  N  M  *  T  N  K  T  T  S  I  D  E  T  L  Y  W  I  V  L  Q  Y  L  N  V  T  W  S  T  A  C  N  C  R  P  L  N  G  A  T  A  S  L  S  L  R  H  I  R  *  K  D  Q  F  N  S  M  M  T   : N  R  *  K  R  S  A  G  D  N  Q  S  Q  V  A  E  A  S  *  H  N  *  V  Q  R   : G  D  S  D  A  N  S  S  R  Y  C  D  G  V  C  I  W  W  G  A  F  *  E  N  L  *  C  G  A  L  Q  *  G  *   : G  S  L  L  L  P  A  T  Y  I  W  C  Q  L  L  S  L  H   : A  S  M  S  S  G  L  E  A  G  K  Y  V  A  *  W  K  P  C  S  S  A  K  N  L  *  F  W  V  F  Q   : V  C  S  A  A  F  T  A  K  I  N  C  G  N  T  C  I  Y  C  T  R  S  F  V  E  E  R  I  R  W  Q   : D  C  R  C  L  V  V  W  S  D  I  V  C  H  V  S  G  C  L  P  F  *  G  S  *  *  T  K  R  F  S  E  D  D  Q   : *  D  P  E  R  A  V  F  C  S  *  E  H  S  D  I  *  G  M  S  P  L  N  L  K  D  L  C  W  R  S  G  T   : E  D  H  N  A  *  N  Q  E  S  C  M  V  F  E  E  S  S  S  G  L  N  R  R  *  D  D  *  *  S  V  *  R  T  R  S  T  N  A  E  H  *  Y  D  H  A  N  N  L  R  G  N  S  T  T  N  W  L  V  *  L  G  N  D  G  R  *  H  G  *  L  G  F  R  A  *  S  *  Y  *  *  Q  R  G  D  H  I  C  N  V  S  A  C  Q  A  C  E  K  E  G  V  S  T  I  L  E  H  F  W  T  C  W  C  A  R  L  R  D  C  *  S  S  V  T  *  K  W  G  I  Y  N  V  C  N  *  S  S  S  Y  P  E  R  G  F  *  S  A  H  E  L  F  L  L  L  P  *  E  E  L  A  E  K  V  M  E  F  P  Y  L  S  S  *  S  L  Y  N  V  I  Q  C  C  S  F  V  T  L  Y  F  L  I  C  V  C  V  K  T  N  Y  V  L  F  L  V  F  V  S  *  D  A  *   </second_frame>
            <third_frame>   Q  Q  N  N  N  N  E  I  C  K  Q  I  K  P  Q  V  L  M  K  L  C  I  G  L  Y  S  N  T  *  M  *  H  G  L  L  L  A  I  V  D  L  *  M  E  Q  L  L  V  S  P  F  D  T  L  D  E  R  I  N  S  T  V  *  *  Q  :  I  D  E  N  V  Q  R  E  I  I  N  H  R  S  L  R  H  P  N  I  I  R  F  K  E  :  V  I  L  T  P  T  H  L  A  I  V  M  E  Y  A  S  G  G  E  L  F  E  R  I  S  N  A  G  R  F  N  E  D  E  :  A  R  F  F  F  Q  Q  L  I  S  G  V  S  Y  C  H  S  M  :  Q  V  C  H  R  D  L  K  L  E  N  T  L  L  D  G  S  P  A  P  R  L  K  I  C  D  F  G  Y  S  K  :  S  A  L  L  H  S  Q  P  K  S  T  V  G  T  P  A  Y  I  A  P  E  V  L  L  R  K  E  Y  D  G  K  :  I  A  D  V  W  S  C  G  V  T  L  Y  V  M  L  V  G  A  Y  P  F  E  D  P  D  E  P  K  D  F  R  K  T  I  N  :  R  I  L  S  V  Q  Y  S  V  P  E  N  I  Q  I  S  E  E  C  R  H  L  I  S  R  I  F  V  G  D  P  A  Q  :  R  I  T  M  P  E  I  R  N  H  V  W  F  L  K  N  L  P  A  D  L  I  D  D  R  M  I  S  D  Q  F  E  E  P  D  Q  P  M  Q  S  I  D  T  I  M  Q  I  I  S  E  A  T  V  P  P  I  G  L  Y  N  L  E  M  M  D  D  D  M  D  D  L  D  S  E  P  D  L  D  I  D  S  S  G  E  I  I  Y  A  M  *  V  H  A  K  L  V  K  R  K  V  Y  P  Q  S  *  N  I  S  G  L  V  G  V  Q  G  L  E  I  V  E  A  Q  *  H  E  N  G  V  F  T  M  F  V  I  S  Q  V  L  I  L  K  G  A  F  S  L  P  M  N  Y  F  F  Y  Y  H  R  R  N  W  L  K  K  *  W  S  F  H  T  *  V  H  N  L  F  I  M  S  Y  S  V  V  L  L  *  L  C  T  F  L  Y  A  F  V  S  K  Q  I  M  C  S  F  W  F  L  *  V  K  M  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27540" stop="27542"/>
                    <exon start="27612" stop="27686"/>
                    <exon start="27766" stop="27867"/>
                    <exon start="27950" stop="28003"/>
                    <exon start="28097" stop="28189"/>
                    <exon start="28299" stop="28391"/>
                    <exon start="29605" stop="29709"/>
                    <exon start="29797" stop="29895"/>
                    <exon start="30337" stop="30606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIDENVQREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERISNAGRFNEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLLRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKDFRKTINRILSVQYSVPENIQISEECRHLISRIFVGDPAQRITMPEIRNHVWFLKNLPADLIDDRMISDQFEEPDQPMQSIDTIMQIISEATVPPIGLYNLEMMDDDMDDLDSEPDLDIDSSGEIIYAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="26105" e_stop="26323"/>
            <exon e_start="27612" e_stop="27686"/>
            <exon e_start="27766" e_stop="27867"/>
            <exon e_start="27950" e_stop="28003"/>
            <exon e_start="28097" e_stop="28189"/>
            <exon e_start="28299" e_stop="28391"/>
            <exon e_start="29605" e_stop="29709"/>
            <exon e_start="29797" e_stop="29895"/>
            <exon e_start="30337" e_stop="30967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="0.900"/>
          <exon-intron don_prob="0.945" acc_prob="0.987" e_score="0.987"/>
          <exon-intron don_prob="0.933" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.283" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.789" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="26105" e_stop="26323" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="26324" i_stop="27611" i_length="1288"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="27612" e_stop="27686" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27766" e_stop="27867" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.933" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27950" e_stop="28003" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.283">
            <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28097" e_stop="28189" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28299" e_stop="28391" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29605" e_stop="29709" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29895" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.823" acc_prob="0.789">
            <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30967" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26105" stop="26323"/>
              <exon start="27612" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27668" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27767" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27998" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28110" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29637" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29850" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30567" stop="30967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTG : ATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAG : GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAG : GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG : CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG : TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG : ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT : AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG : AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</gDNA_template>
            <first_frame> L  R  S  A  F  G  K  L  *  M  L  N  E  V  V  H  W  *  E  F  P  E  L  L  F  S  R  F  I  I  A  G  *  L  *  Q  V  G  *  T  L  *  Q  I  K  N  D  D  H  F  L  L  F  W  V  T  I  K  M  I  I  *  K  R  L  I  L  L  Q  L  C  I  L  :  I  D  E  N  V  Q  R  E  I  I  N  H  R  S  L  R  H  P  N  I  I  R  F  K  E  :  V  I  L  T  P  T  H  L  A  I  V  M  E  Y  A  S  G  G  E  L  F  E  R  I  S  N  A  G  R  F  N  E  D  E  :  A  R  F  F  F  Q  Q  L  I  S  G  V  S  Y  C  H  S  M  :  Q  V  C  H  R  D  L  K  L  E  N  T  L  L  D  G  S  P  A  P  R  L  K  I  C  D  F  G  Y  S  K  :  S  A  L  L  H  S  Q  P  K  S  T  V  G  T  P  A  Y  I  A  P  E  V  L  L  R  K  E  Y  D  G  K  :  I  A  D  V  W  S  C  G  V  T  L  Y  V  M  L  V  G  A  Y  P  F  E  D  P  D  E  P  K  D  F  R  K  T  I  N  :  R  I  L  S  V  Q  Y  S  V  P  E  N  I  Q  I  S  E  E  C  R  H  L  I  S  R  I  F  V  G  D  P  A  Q  :  R  I  T  M  P  E  I  R  N  H  V  W  F  L  K  N  L  P  A  D  L  I  D  D  R  M  I  S  D  Q  F  E  E  P  D  Q  P  M  Q  S  I  D  T  I  M  Q  I  I  S  E  A  T  V  P  P  I  G  L  Y  N  L  E  M  M  D  D  D  M  D  D  L  D  S  E  P  D  L  D  I  D  S  S  G  E  I  I  Y  A  M  *  V  H  A  K  L  V  K  R  K  V  Y  P  Q  S  *  N  I  S  G  L  V  G  V  Q  G  L  E  I  V  E  A  Q  *  H  E  N  G  V  F  T  M  F  V  I  S  Q  V  L  I  L  K  G  A  F  S  L  P  M  N  Y  F  F  Y  Y  H  R  R  N  W  L  K  K  *  W  S  F  H  T  *  V  H  N  L  F  I  M  S  Y  S  V  V  L  L  *  L  C  T  F  L  Y  A  F  V  S  K  Q  I  M  C  S  F  W  F  L  *  V  K  M  L  N  </first_frame>
            <second_frame>  L  D  L  P  L  V  N  C  E  C  *  M  R  S  F  I  G  E  S  F  R  N  Y  F  L  A  D  L  L  *  Q  D  N  Y  D  K  L  V  E  L  F  N  R  L  R  T  M  I  I  S  C  C  F  G  *  L  S  K  *  L  S  E  R  G  *  F  C  F  N  F  V  F  * :   *  M  K  T  F  S  G  R  *  S  I  T  G  R  *  G  I  L  T  *  L  G  S  K  R :   *  F  *  R  Q  L  I  S  L  L  *  W  S  M  H  L  V  G  S  F  L  R  E  S  L  M  R  G  A  S  M  R  M  R :   L  A  S  S  S  S  N  L  Y  L  V  S  A  T  V  T  P  C :   K  Y  V  I  G  T  *  S  W  K  I  R  C  L  M  E  A  L  L  L  G  *  K  F  V  I  L  G  I  P  S :   L  L  C  C  I  H  S  Q  N  Q  L  W  E  H  L  H  I  L  H  Q  K  F  C  *  G  K  N  T  M  A  R :   L  Q  M  S  G  R  V  E  *  H  C  M  S  C  *  W  V  L  T  L  L  R  I  L  M  N  Q  K  I  F  G  R  R  S  I :   G  S  *  A  C  S  I  L  F  L  R  T  F  R  Y  L  R  N  V  A  T  *  S  Q  G  S  L  L  E  I  R  H  R :   G  S  Q  C  L  K  S  G  I  M  Y  G  F  *  R  I  F  Q  R  T  *  *  T  I  G  *  L  V  I  S  L  K  N  P  I  N  Q  C  R  A  L  I  R  S  C  K  *  S  Q  R  Q  Q  Y  H  Q  L  A  C  I  T  W  K  *  W  T  M  T  W  M  T  W  I  Q  S  L  I  L  I  L  I  A  A  G  R  S  Y  M  Q  C  E  C  M  P  S  L  *  K  G  R  C  I  H  N  L  R  T  F  L  D  L  L  V  C  K  A  *  R  L  L  K  L  S  N  M  K  M  G  Y  L  Q  C  L  *  L  V  K  F  L  S  *  K  G  L  L  V  C  P  *  I  I  S  S  I  T  I  G  G  I  G  *  K  S  N  G  V  S  I  L  E  F  I  I  S  L  *  C  H  T  V  L  F  F  C  N  S  V  L  S  Y  M  R  L  C  Q  N  K  L  C  A  L  S  G  F  C  K  L  R  C  L  I </second_frame>
            <third_frame>   *  I  C  L  W  *  I  V  N  V  K  *  G  R  S  L  V  R  V  S  G  T  T  F  *  Q  I  Y  Y  S  R  I  T  M  T  S  W  L  N  S  L  T  D  *  E  R  *  S  F  P  A  V  L  G  N  Y  Q  N  D  Y  L  K  E  A  D  F  A  S  T  L  Y  S   : D  R  *  K  R  S  A  G  D  N  Q  S  Q  V  A  E  A  S  *  H  N  *  V  Q  R   : G  D  S  D  A  N  S  S  R  Y  C  D  G  V  C  I  W  W  G  A  F  *  E  N  L  *  C  G  A  L  Q  *  G  *   : G  S  L  L  L  P  A  T  Y  I  W  C  Q  L  L  S  L  H   : A  S  M  S  S  G  L  E  A  G  K  Y  V  A  *  W  K  P  C  S  S  A  K  N  L  *  F  W  V  F  Q   : V  C  S  A  A  F  T  A  K  I  N  C  G  N  T  C  I  Y  C  T  R  S  F  V  E  E  R  I  R  W  Q   : D  C  R  C  L  V  V  W  S  D  I  V  C  H  V  S  G  C  L  P  F  *  G  S  *  *  T  K  R  F  S  E  D  D  Q   : *  D  P  E  R  A  V  F  C  S  *  E  H  S  D  I  *  G  M  S  P  L  N  L  K  D  L  C  W  R  S  G  T   : E  D  H  N  A  *  N  Q  E  S  C  M  V  F  E  E  S  S  S  G  L  N  R  R  *  D  D  *  *  S  V  *  R  T  R  S  T  N  A  E  H  *  Y  D  H  A  N  N  L  R  G  N  S  T  T  N  W  L  V  *  L  G  N  D  G  R  *  H  G  *  L  G  F  R  A  *  S  *  Y  *  *  Q  R  G  D  H  I  C  N  V  S  A  C  Q  A  C  E  K  E  G  V  S  T  I  L  E  H  F  W  T  C  W  C  A  R  L  R  D  C  *  S  S  V  T  *  K  W  G  I  Y  N  V  C  N  *  S  S  S  Y  P  E  R  G  F  *  S  A  H  E  L  F  L  L  L  P  *  E  E  L  A  E  K  V  M  E  F  P  Y  L  S  S  *  S  L  Y  N  V  I  Q  C  C  S  F  V  T  L  Y  F  L  I  C  V  C  V  K  T  N  Y  V  L  F  L  V  F  V  S  *  D  A  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26291" stop="26323"/>
                    <exon start="27612" stop="27686"/>
                    <exon start="27766" stop="27867"/>
                    <exon start="27950" stop="28003"/>
                    <exon start="28097" stop="28189"/>
                    <exon start="28299" stop="28391"/>
                    <exon start="29605" stop="29709"/>
                    <exon start="29797" stop="29895"/>
                    <exon start="30337" stop="30606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRLILLQLCILIDENVQREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERISNAGRFNEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLLRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKDFRKTINRILSVQYSVPENIQISEECRHLISRIFVGDPAQRITMPEIRNHVWFLKNLPADLIDDRMISDQFEEPDQPMQSIDTIMQIISEATVPPIGLYNLEMMDDDMDDLDSEPDLDIDSSGEIIYAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="26103" e_stop="26463"/>
            <exon e_start="27147" e_stop="27155"/>
            <exon e_start="27406" e_stop="27686"/>
            <exon e_start="27766" e_stop="27867"/>
            <exon e_start="27950" e_stop="28003"/>
            <exon e_start="28097" e_stop="28189"/>
            <exon e_start="28299" e_stop="28391"/>
            <exon e_start="29605" e_stop="29709"/>
            <exon e_start="29797" e_stop="29895"/>
            <exon e_start="30337" e_stop="30967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.532" e_score="0.892"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.778"/>
          <exon-intron don_prob="0.945" acc_prob="0.987" e_score="0.918"/>
          <exon-intron don_prob="0.933" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.283" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.789" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="26103" e_stop="26463" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.532">
            <gDNA_intron_boundary i_start="26464" i_stop="27146" i_length="683"/>
          </intron>
          <exon e_serial="2" e_score="0.778">
            <gDNA_exon_boundary e_start="27147" e_stop="27155" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27156" i_stop="27405" i_length="250"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="27406" e_stop="27686" e_length="281"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27687" i_stop="27765" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27766" e_stop="27867" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27868" i_stop="27949" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27950" e_stop="28003" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.283">
            <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28097" e_stop="28189" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28299" e_stop="28391" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29605" e_stop="29709" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29895" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.823" acc_prob="0.789">
            <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30967" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26103" stop="26463"/>
              <exon start="27147" stop="27155"/>
              <exon start="27406" stop="27686"/>
              <exon start="27766" stop="27808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27668" stop="27686"/>
              <exon start="27766" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27767" stop="27867"/>
              <exon start="27950" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27998" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28110" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29637" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29850" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30567" stop="30967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTAGATCTGCCTTTGGTAAATTGTGAATGTTAAATGAGGTCGTTCATTGGTGAGAGTTTCCGGAACTACTTTTTAGCAGATTTATTATAGCAGGATAACTATGACAAGTTGGTTGAACTCTTTAACAGATTAAGAACGATGATCATTTCCTGCTGTTTTGGGTAACTATCAAAATGATTATCTGAAAGAGGCTGATTTTGCTTCAACTTTGTATTCTGGTAGTTGTAGTAACATGTACCACTTGATAATTTTTTGTACACTCGGTGCTAATCAATTTACGGTTCTAACTGTCTGGGAAAGGTTCTGCTTGAGAAATCTTCTGGCTGGTTTCTCAAGAAAAGTAAACCTGGACTTTACT : GCTGTATGC : TTTGTATTGGATTGTACTCCAATACTTAAATGTGACATGGTCTACTGCTTGCAATTGTAGACCTTTAAATGGAGCAACTGCTAGTCTCTCCCTTCGACACATTAGATGAAAGGATCAATTCAACAGTATGATGACAAGTTAGTTGTGGATATTATATCAGCTCCATATGACACTGCTCATTTCTTCTCCCATCTTCTGGCTTGCAGATAGATGAAAACGTTCAGCGGGAGATAATCAATCACAGGTCGCTGAGGCATCCTAACATAATTAGGTTCAAAGAG : GTGATTCTGACGCCAACTCATCTCGCTATTGTGATGGAGTATGCATCTGGTGGGGAGCTTTTTGAGAGAATCTCTAATGCGGGGCGCTTCAATGAGGATGAG : GCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG : CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG : TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG : ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT : AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG : AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</gDNA_template>
            <first_frame> I  L  D  L  P  L  V  N  C  E  C  *  M  R  S  F  I  G  E  S  F  R  N  Y  F  L  A  D  L  L  *  Q  D  N  Y  D  K  L  V  E  L  F  N  R  L  R  T  M  I  I  S  C  C  F  G  *  L  S  K  *  L  S  E  R  G  *  F  C  F  N  F  V  F  W  *  L  *  *  H  V  P  L  D  N  F  L  Y  T  R  C  *  S  I  Y  G  S  N  C  L  G  K  V  L  L  E  K  S  S  G  W  F  L  K  K  S  K  P  G  L  Y   : C  C  M   : L  C  I  G  L  Y  S  N  T  *  M  *  H  G  L  L  L  A  I  V  D  L  *  M  E  Q  L  L  V  S  P  F  D  T  L  D  E  R  I  N  S  T  V  *  *  Q  V  S  C  G  Y  Y  I  S  S  I  *  H  C  S  F  L  L  P  S  S  G  L  Q  I  D  E  N  V  Q  R  E  I  I  N  H  R  S  L  R  H  P  N  I  I  R  F  K  E  :  V  I  L  T  P  T  H  L  A  I  V  M  E  Y  A  S  G  G  E  L  F  E  R  I  S  N  A  G  R  F  N  E  D  E  :  A  R  F  F  F  Q  Q  L  I  S  G  V  S  Y  C  H  S  M  :  Q  V  C  H  R  D  L  K  L  E  N  T  L  L  D  G  S  P  A  P  R  L  K  I  C  D  F  G  Y  S  K  :  S  A  L  L  H  S  Q  P  K  S  T  V  G  T  P  A  Y  I  A  P  E  V  L  L  R  K  E  Y  D  G  K  :  I  A  D  V  W  S  C  G  V  T  L  Y  V  M  L  V  G  A  Y  P  F  E  D  P  D  E  P  K  D  F  R  K  T  I  N  :  R  I  L  S  V  Q  Y  S  V  P  E  N  I  Q  I  S  E  E  C  R  H  L  I  S  R  I  F  V  G  D  P  A  Q  :  R  I  T  M  P  E  I  R  N  H  V  W  F  L  K  N  L  P  A  D  L  I  D  D  R  M  I  S  D  Q  F  E  E  P  D  Q  P  M  Q  S  I  D  T  I  M  Q  I  I  S  E  A  T  V  P  P  I  G  L  Y  N  L  E  M  M  D  D  D  M  D  D  L  D  S  E  P  D  L  D  I  D  S  S  G  E  I  I  Y  A  M  *  V  H  A  K  L  V  K  R  K  V  Y  P  Q  S  *  N  I  S  G  L  V  G  V  Q  G  L  E  I  V  E  A  Q  *  H  E  N  G  V  F  T  M  F  V  I  S  Q  V  L  I  L  K  G  A  F  S  L  P  M  N  Y  F  F  Y  Y  H  R  R  N  W  L  K  K  *  W  S  F  H  T  *  V  H  N  L  F  I  M  S  Y  S  V  V  L  L  *  L  C  T  F  L  Y  A  F  V  S  K  Q  I  M  C  S  F  W  F  L  *  V  K  M  L  N  </first_frame>
            <second_frame>  S  *  I  C  L  W  *  I  V  N  V  K  *  G  R  S  L  V  R  V  S  G  T  T  F  *  Q  I  Y  Y  S  R  I  T  M  T  S  W  L  N  S  L  T  D  *  E  R  *  S  F  P  A  V  L  G  N  Y  Q  N  D  Y  L  K  E  A  D  F  A  S  T  L  Y  S  G  S  C  S  N  M  Y  H  L  I  I  F  C  T  L  G  A  N  Q  F  T  V  L  T  V  W  E  R  F  C  L  R  N  L  L  A  G  F  S  R  K  V  N  L  D  F  T  :  A  V  C  :  F  V  L  D  C  T  P  I  L  K  C  D  M  V  Y  C  L  Q  L  *  T  F  K  W  S  N  C  *  S  L  P  S  T  H  *  M  K  G  S  I  Q  Q  Y  D  D  K  L  V  V  D  I  I  S  A  P  Y  D  T  A  H  F  F  S  H  L  L  A  C  R  *  M  K  T  F  S  G  R  *  S  I  T  G  R  *  G  I  L  T  *  L  G  S  K  R :   *  F  *  R  Q  L  I  S  L  L  *  W  S  M  H  L  V  G  S  F  L  R  E  S  L  M  R  G  A  S  M  R  M  R :   L  A  S  S  S  S  N  L  Y  L  V  S  A  T  V  T  P  C :   K  Y  V  I  G  T  *  S  W  K  I  R  C  L  M  E  A  L  L  L  G  *  K  F  V  I  L  G  I  P  S :   L  L  C  C  I  H  S  Q  N  Q  L  W  E  H  L  H  I  L  H  Q  K  F  C  *  G  K  N  T  M  A  R :   L  Q  M  S  G  R  V  E  *  H  C  M  S  C  *  W  V  L  T  L  L  R  I  L  M  N  Q  K  I  F  G  R  R  S  I :   G  S  *  A  C  S  I  L  F  L  R  T  F  R  Y  L  R  N  V  A  T  *  S  Q  G  S  L  L  E  I  R  H  R :   G  S  Q  C  L  K  S  G  I  M  Y  G  F  *  R  I  F  Q  R  T  *  *  T  I  G  *  L  V  I  S  L  K  N  P  I  N  Q  C  R  A  L  I  R  S  C  K  *  S  Q  R  Q  Q  Y  H  Q  L  A  C  I  T  W  K  *  W  T  M  T  W  M  T  W  I  Q  S  L  I  L  I  L  I  A  A  G  R  S  Y  M  Q  C  E  C  M  P  S  L  *  K  G  R  C  I  H  N  L  R  T  F  L  D  L  L  V  C  K  A  *  R  L  L  K  L  S  N  M  K  M  G  Y  L  Q  C  L  *  L  V  K  F  L  S  *  K  G  L  L  V  C  P  *  I  I  S  S  I  T  I  G  G  I  G  *  K  S  N  G  V  S  I  L  E  F  I  I  S  L  *  C  H  T  V  L  F  F  C  N  S  V  L  S  Y  M  R  L  C  Q  N  K  L  C  A  L  S  G  F  C  K  L  R  C  L  I </second_frame>
            <third_frame>   L  R  S  A  F  G  K  L  *  M  L  N  E  V  V  H  W  *  E  F  P  E  L  L  F  S  R  F  I  I  A  G  *  L  *  Q  V  G  *  T  L  *  Q  I  K  N  D  D  H  F  L  L  F  W  V  T  I  K  M  I  I  *  K  R  L  I  L  L  Q  L  C  I  L  V  V  V  V  T  C  T  T  *  *  F  F  V  H  S  V  L  I  N  L  R  F  *  L  S  G  K  G  S  A  *  E  I  F  W  L  V  S  Q  E  K  *  T  W  T  L  L :   L  Y  A :   L  Y  W  I  V  L  Q  Y  L  N  V  T  W  S  T  A  C  N  C  R  P  L  N  G  A  T  A  S  L  S  L  R  H  I  R  *  K  D  Q  F  N  S  M  M  T  S  *  L  W  I  L  Y  Q  L  H  M  T  L  L  I  S  S  P  I  F  W  L  A  D  R  *  K  R  S  A  G  D  N  Q  S  Q  V  A  E  A  S  *  H  N  *  V  Q  R   : G  D  S  D  A  N  S  S  R  Y  C  D  G  V  C  I  W  W  G  A  F  *  E  N  L  *  C  G  A  L  Q  *  G  *   : G  S  L  L  L  P  A  T  Y  I  W  C  Q  L  L  S  L  H   : A  S  M  S  S  G  L  E  A  G  K  Y  V  A  *  W  K  P  C  S  S  A  K  N  L  *  F  W  V  F  Q   : V  C  S  A  A  F  T  A  K  I  N  C  G  N  T  C  I  Y  C  T  R  S  F  V  E  E  R  I  R  W  Q   : D  C  R  C  L  V  V  W  S  D  I  V  C  H  V  S  G  C  L  P  F  *  G  S  *  *  T  K  R  F  S  E  D  D  Q   : *  D  P  E  R  A  V  F  C  S  *  E  H  S  D  I  *  G  M  S  P  L  N  L  K  D  L  C  W  R  S  G  T   : E  D  H  N  A  *  N  Q  E  S  C  M  V  F  E  E  S  S  S  G  L  N  R  R  *  D  D  *  *  S  V  *  R  T  R  S  T  N  A  E  H  *  Y  D  H  A  N  N  L  R  G  N  S  T  T  N  W  L  V  *  L  G  N  D  G  R  *  H  G  *  L  G  F  R  A  *  S  *  Y  *  *  Q  R  G  D  H  I  C  N  V  S  A  C  Q  A  C  E  K  E  G  V  S  T  I  L  E  H  F  W  T  C  W  C  A  R  L  R  D  C  *  S  S  V  T  *  K  W  G  I  Y  N  V  C  N  *  S  S  S  Y  P  E  R  G  F  *  S  A  H  E  L  F  L  L  L  P  *  E  E  L  A  E  K  V  M  E  F  P  Y  L  S  S  *  S  L  Y  N  V  I  Q  C  C  S  F  V  T  L  Y  F  L  I  C  V  C  V  K  T  N  Y  V  L  F  L  V  F  V  S  *  D  A  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27576" stop="27686"/>
                    <exon start="27766" stop="27867"/>
                    <exon start="27950" stop="28003"/>
                    <exon start="28097" stop="28189"/>
                    <exon start="28299" stop="28391"/>
                    <exon start="29605" stop="29709"/>
                    <exon start="29797" stop="29895"/>
                    <exon start="30337" stop="30606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCSFLLPSSGLQIDENVQREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERISNAGRFNEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLLRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKDFRKTINRILSVQYSVPENIQISEECRHLISRIFVGDPAQRITMPEIRNHVWFLKNLPADLIDDRMISDQFEEPDQPMQSIDTIMQIISEATVPPIGLYNLEMMDDDMDDLDSEPDLDIDSSGEIIYAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26248" stop="26463"/>
                    <exon start="27147" stop="27155"/>
                    <exon start="27406" stop="27465"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPAVLGNYQNDYLKEADFASTLYSGSCSNMYHLIIFCTLGANQFTVLTVWERFCLRNLLAGFSRKVNLDFTAVCFVLDCTPILKCDMVYCLQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="27943" e_stop="28003"/>
            <exon e_start="28097" e_stop="28189"/>
            <exon e_start="28299" e_stop="28391"/>
            <exon e_start="29605" e_stop="29709"/>
            <exon e_start="29797" e_stop="29895"/>
            <exon e_start="30337" e_stop="30967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.283" e_score="0.951"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.789" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="27943" e_stop="28003" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.283">
            <gDNA_intron_boundary i_start="28004" i_stop="28096" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28097" e_stop="28189" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28190" i_stop="28298" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28299" e_stop="28391" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28392" i_stop="29604" i_length="1213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29605" e_stop="29709" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29710" i_stop="29796" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29895" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.823" acc_prob="0.789">
            <gDNA_intron_boundary i_start="29896" i_stop="30336" i_length="441"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30967" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27943" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27998" stop="28003"/>
              <exon start="28097" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28110" stop="28189"/>
              <exon start="28299" stop="28391"/>
              <exon start="29605" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29637" stop="29709"/>
              <exon start="29797" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29850" stop="29895"/>
              <exon start="30337" stop="30884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30567" stop="30967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTCAGGCTCGCTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTACTGTCACTCCATG : CAAGTATGTCATCGGGACTTGAAGCTGGAAAATACGTTGCTTGATGGAAGCCCTGCTCCTCGGCTAAAAATTTGTGATTTTGGGTATTCCAAG : TCTGCTCTGCTGCATTCACAGCCAAAATCAACTGTGGGAACACCTGCATATATTGCACCAGAAGTTTTGTTGAGGAAAGAATACGATGGCAAG : ATTGCAGATGTCTGGTCGTGTGGAGTGACATTGTATGTCATGTTAGTGGGTGCTTACCCTTTTGAGGATCCTGATGAACCAAAAGATTTTCGGAAGACGATCAAT : AGGATCCTGAGCGTGCAGTATTCTGTTCCTGAGAACATTCAGATATCTGAGGAATGTCGCCACTTAATCTCAAGGATCTTTGTTGGAGATCCGGCACAG : AGGATCACAATGCCTGAAATCAGGAATCATGTATGGTTTTTGAAGAATCTTCCAGCGGACTTAATAGACGATAGGATGATTAGTGATCAGTTTGAAGAACCCGATCAACCAATGCAGAGCATTGATACGATCATGCAAATAATCTCAGAGGCAACAGTACCACCAATTGGCTTGTATAACTTGGAAATGATGGACGATGACATGGATGACTTGGATTCAGAGCCTGATCTTGATATTGATAGCAGCGGGGAGATCATATATGCAATGTGAGTGCATGCCAAGCTTGTGAAAAGGAAGGTGTATCCACAATCTTAGAACATTTCTGGACTTGTTGGTGTGCAAGGCTTAGAGATTGTTGAAGCTCAGTAACATGAAAATGGGGTATTTACAATGTTTGTAATTAGTCAAGTTCTTATCCTGAAAGGGGCTTTTAGTCTGCCCATGAATTATTTCTTCTATTACCATAGGAGGAATTGGCTGAAAAAGTAATGGAGTTTCCATACTTGAGTTCATAATCTCTTTATAATGTCATACAGTGTTGTTCTTTTGTAACTCTGTACTTTCTTATATGCGTTTGTGTCAAAACAAATTATGTGCTCTTTCTGGTTTTTGTAAGTTAAGATGCTTAATA</gDNA_template>
            <first_frame> C  S  G  S  L  L  L  P  A  T  Y  I  W  C  Q  L  L  S  L  H   : A  S  M  S  S  G  L  E  A  G  K  Y  V  A  *  W  K  P  C  S  S  A  K  N  L  *  F  W  V  F  Q   : V  C  S  A  A  F  T  A  K  I  N  C  G  N  T  C  I  Y  C  T  R  S  F  V  E  E  R  I  R  W  Q   : D  C  R  C  L  V  V  W  S  D  I  V  C  H  V  S  G  C  L  P  F  *  G  S  *  *  T  K  R  F  S  E  D  D  Q   : *  D  P  E  R  A  V  F  C  S  *  E  H  S  D  I  *  G  M  S  P  L  N  L  K  D  L  C  W  R  S  G  T   : E  D  H  N  A  *  N  Q  E  S  C  M  V  F  E  E  S  S  S  G  L  N  R  R  *  D  D  *  *  S  V  *  R  T  R  S  T  N  A  E  H  *  Y  D  H  A  N  N  L  R  G  N  S  T  T  N  W  L  V  *  L  G  N  D  G  R  *  H  G  *  L  G  F  R  A  *  S  *  Y  *  *  Q  R  G  D  H  I  C  N  V  S  A  C  Q  A  C  E  K  E  G  V  S  T  I  L  E  H  F  W  T  C  W  C  A  R  L  R  D  C  *  S  S  V  T  *  K  W  G  I  Y  N  V  C  N  *  S  S  S  Y  P  E  R  G  F  *  S  A  H  E  L  F  L  L  L  P  *  E  E  L  A  E  K  V  M  E  F  P  Y  L  S  S  *  S  L  Y  N  V  I  Q  C  C  S  F  V  T  L  Y  F  L  I  C  V  C  V  K  T  N  Y  V  L  F  L  V  F  V  S  *  D  A  *   </first_frame>
            <second_frame>  A  Q  A  R  F  F  F  Q  Q  L  I  S  G  V  S  Y  C  H  S  M  :  Q  V  C  H  R  D  L  K  L  E  N  T  L  L  D  G  S  P  A  P  R  L  K  I  C  D  F  G  Y  S  K  :  S  A  L  L  H  S  Q  P  K  S  T  V  G  T  P  A  Y  I  A  P  E  V  L  L  R  K  E  Y  D  G  K  :  I  A  D  V  W  S  C  G  V  T  L  Y  V  M  L  V  G  A  Y  P  F  E  D  P  D  E  P  K  D  F  R  K  T  I  N  :  R  I  L  S  V  Q  Y  S  V  P  E  N  I  Q  I  S  E  E  C  R  H  L  I  S  R  I  F  V  G  D  P  A  Q  :  R  I  T  M  P  E  I  R  N  H  V  W  F  L  K  N  L  P  A  D  L  I  D  D  R  M  I  S  D  Q  F  E  E  P  D  Q  P  M  Q  S  I  D  T  I  M  Q  I  I  S  E  A  T  V  P  P  I  G  L  Y  N  L  E  M  M  D  D  D  M  D  D  L  D  S  E  P  D  L  D  I  D  S  S  G  E  I  I  Y  A  M  *  V  H  A  K  L  V  K  R  K  V  Y  P  Q  S  *  N  I  S  G  L  V  G  V  Q  G  L  E  I  V  E  A  Q  *  H  E  N  G  V  F  T  M  F  V  I  S  Q  V  L  I  L  K  G  A  F  S  L  P  M  N  Y  F  F  Y  Y  H  R  R  N  W  L  K  K  *  W  S  F  H  T  *  V  H  N  L  F  I  M  S  Y  S  V  V  L  L  *  L  C  T  F  L  Y  A  F  V  S  K  Q  I  M  C  S  F  W  F  L  *  V  K  M  L  N  </second_frame>
            <third_frame>   L  R  L  A  S  S  S  S  N  L  Y  L  V  S  A  T  V  T  P  C :   K  Y  V  I  G  T  *  S  W  K  I  R  C  L  M  E  A  L  L  L  G  *  K  F  V  I  L  G  I  P  S :   L  L  C  C  I  H  S  Q  N  Q  L  W  E  H  L  H  I  L  H  Q  K  F  C  *  G  K  N  T  M  A  R :   L  Q  M  S  G  R  V  E  *  H  C  M  S  C  *  W  V  L  T  L  L  R  I  L  M  N  Q  K  I  F  G  R  R  S  I :   G  S  *  A  C  S  I  L  F  L  R  T  F  R  Y  L  R  N  V  A  T  *  S  Q  G  S  L  L  E  I  R  H  R :   G  S  Q  C  L  K  S  G  I  M  Y  G  F  *  R  I  F  Q  R  T  *  *  T  I  G  *  L  V  I  S  L  K  N  P  I  N  Q  C  R  A  L  I  R  S  C  K  *  S  Q  R  Q  Q  Y  H  Q  L  A  C  I  T  W  K  *  W  T  M  T  W  M  T  W  I  Q  S  L  I  L  I  L  I  A  A  G  R  S  Y  M  Q  C  E  C  M  P  S  L  *  K  G  R  C  I  H  N  L  R  T  F  L  D  L  L  V  C  K  A  *  R  L  L  K  L  S  N  M  K  M  G  Y  L  Q  C  L  *  L  V  K  F  L  S  *  K  G  L  L  V  C  P  *  I  I  S  S  I  T  I  G  G  I  G  *  K  S  N  G  V  S  I  L  E  F  I  I  S  L  *  C  H  T  V  L  F  F  C  N  S  V  L  S  Y  M  R  L  C  Q  N  K  L  C  A  L  S  G  F  C  K  L  R  C  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27944" stop="28003"/>
                    <exon start="28097" stop="28189"/>
                    <exon start="28299" stop="28391"/>
                    <exon start="29605" stop="29709"/>
                    <exon start="29797" stop="29895"/>
                    <exon start="30337" stop="30606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLLRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKDFRKTINRILSVQYSVPENIQISEECRHLISRIFVGDPAQRITMPEIRNHVWFLKNLPADLIDDRMISDQFEEPDQPMQSIDTIMQIISEATVPPIGLYNLEMMDDDMDDLDSEPDLDIDSSGEIIYAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30838" PGL_stop="30353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30838" e_stop="30353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="30838" e_stop="30353" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30838" stop="30353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGGAAACTCCATTACTTTTTCAGCCAATTCCTCCTATGGTAATAGAAGAAATAATTCATGGGCAGACTAAAAGCCCCTTTCAGGATAAGAACTTGACTAATTACAAACATTGTAAATACCCCATTTTCATGTTACTGAGCTTCAACAATCTCTAAGCCTTGCACACCAACAAGTCCAGAAATGTTCTAAGATTGTGGATACACCTTCCTTTTCACAAGCTTGGCATGCACTCACATTGCATATATGATCTCCCCGCTGCTATCAATATCAAGATCAGGCTCTGAATCCAAGTCATCCATGTCATCGTCCATCATTTCCAAGTTATACAAGCCAATTGGTGGTACTGTTGCCTCTGAGATTATTTGCATGATCGTATCAATGCTCTGCATTGGTTGATCGGGTTCTTCAAACTGATCACTAATCATCCTATCGTCTATTAAGTCCGCTGGAAGATTCTTCAAAAACCATACATGATTCCTGATTT</gDNA_template>
            <first_frame> Y  G  N  S  I  T  F  S  A  N  S  S  Y  G  N  R  R  N  N  S  W  A  D  *  K  P  L  S  G  *  E  L  D  *  L  Q  T  L  *  I  P  H  F  H  V  T  E  L  Q  Q  S  L  S  L  A  H  Q  Q  V  Q  K  C  S  K  I  V  D  T  P  S  F  S  Q  A  W  H  A  L  T  L  H  I  *  S  P  R  C  Y  Q  Y  Q  D  Q  A  L  N  P  S  H  P  C  H  R  P  S  F  P  S  Y  T  S  Q  L  V  V  L  L  P  L  R  L  F  A  *  S  Y  Q  C  S  A  L  V  D  R  V  L  Q  T  D  H  *  S  S  Y  R  L  L  S  P  L  E  D  S  S  K  T  I  H  D  S  *  F </first_frame>
            <second_frame>  M  E  T  P  L  L  F  Q  P  I  P  P  M  V  I  E  E  I  I  H  G  Q  T  K  S  P  F  Q  D  K  N  L  T  N  Y  K  H  C  K  Y  P  I  F  M  L  L  S  F  N  N  L  *  A  L  H  T  N  K  S  R  N  V  L  R  L  W  I  H  L  P  F  H  K  L  G  M  H  S  H  C  I  Y  D  L  P  A  A  I  N  I  K  I  R  L  *  I  Q  V  I  H  V  I  V  H  H  F  Q  V  I  Q  A  N  W  W  Y  C  C  L  *  D  Y  L  H  D  R  I  N  A  L  H  W  L  I  G  F  F  K  L  I  T  N  H  P  I  V  Y  *  V  R  W  K  I  L  Q  K  P  Y  M  I  P  D   </second_frame>
            <third_frame>   W  K  L  H  Y  F  F  S  Q  F  L  L  W  *  *  K  K  *  F  M  G  R  L  K  A  P  F  R  I  R  T  *  L  I  T  N  I  V  N  T  P  F  S  C  Y  *  A  S  T  I  S  K  P  C  T  P  T  S  P  E  M  F  *  D  C  G  Y  T  F  L  F  T  S  L  A  C  T  H  I  A  Y  M  I  S  P  L  L  S  I  S  R  S  G  S  E  S  K  S  S  M  S  S  S  I  I  S  K  L  Y  K  P  I  G  G  T  V  A  S  E  I  I  C  M  I  V  S  M  L  C  I  G  *  S  G  S  S  N  *  S  L  I  I  L  S  S  I  K  S  A  G  R  F  F  K  N  H  T  *  F  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30647" stop="30441"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCGYTFLFTSLACTHIAYMISPLLSISRSGSESKSSMSSSIISKLYKPIGGTVASEIICMIVSMLCIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="33838" PGL_stop="32684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33838" e_stop="33718"/>
            <exon e_start="33386" e_stop="33175"/>
            <exon e_start="33061" e_stop="32684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="0.983"/>
          <exon-intron don_prob="0.995" acc_prob="0.321" e_score="0.972"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="33838" e_stop="33718" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="33717" i_stop="33387" i_length="331"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="33386" e_stop="33175" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.321">
            <gDNA_intron_boundary i_start="33174" i_stop="33062" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="33061" e_stop="32684" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33838" stop="33718"/>
              <exon start="33386" stop="33175"/>
              <exon start="33061" stop="32684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCTGCTGCTCTTTTGGATATGTGGGTGGAACGATACAATCTAGATGAAGATGGCATCACTGCAATGGCCATCTTCCTTGAACTTTCTTCACAAAACCTGGTTAATCTCGCCCTTGCAAG : ACAGGATGCACGAGCAGTTCTTGGCTTACATAACTTGCATTACATACAGCAGCATGATATGCTGAGAGAACTGGTCATACACCAGTGTGATGAGAAGCCGGTAGAAGAGAGAATGAGAATATATATCAACATCAAGGGGAATGAATTTCCTAGGTGGTGGTTTGAACAAAGACTTCAACCACTTCAAGCGGAGGTTTTGTCTATTGTCACAG : ATGAAGATTTCTCCTGTAACTGGCATGGCGTGCAGTTTCCTAAAGTTGAAGTACTTGTGTTGAACTTTGAAACAAGGACCTACAAATTACCCCCTTTTATAGAGCAGATGAGCCAATTGAAGACACTGGTTCTGACAAACAATGGTTTCTTCCCAGCCAAGTTGAATAATTTTCAGCTTTGTTCTCTGCTCAATCTTAAGAGAATCAACCTGGAACGCATCTCTGTTACATCCATTATGTCAGCCAATCTGCAGCTACCAAATTTGCGCAAAATCTCCCTGAACATGTGTGAAATCAGGGAGGCATTTGAGAACTCTGCTGCCAAGATGTCTTATATGTGGCCAAAACTCGTTGAGATTAATATCGAGTACTGCAGCG</gDNA_template>
            <first_frame> I  L  L  L  F  W  I  C  G  W  N  D  T  I  *  M  K  M  A  S  L  Q  W  P  S  S  L  N  F  L  H  K  T  W  L  I  S  P  L  Q   : D  R  M  H  E  Q  F  L  A  Y  I  T  C  I  T  Y  S  S  M  I  C  *  E  N  W  S  Y  T  S  V  M  R  S  R  *  K  R  E  *  E  Y  I  S  T  S  R  G  M  N  F  L  G  G  G  L  N  K  D  F  N  H  F  K  R  R  F  C  L  L  S  Q  :  M  K  I  S  P  V  T  G  M  A  C  S  F  L  K  L  K  Y  L  C  *  T  L  K  Q  G  P  T  N  Y  P  L  L  *  S  R  *  A  N  *  R  H  W  F  *  Q  T  M  V  S  S  Q  P  S  *  I  I  F  S  F  V  L  C  S  I  L  R  E  S  T  W  N  A  S  L  L  H  P  L  C  Q  P  I  C  S  Y  Q  I  C  A  K  S  P  *  T  C  V  K  S  G  R  H  L  R  T  L  L  P  R  C  L  I  C  G  Q  N  S  L  R  L  I  S  S  T  A  A </first_frame>
            <second_frame>  S  C  C  S  F  G  Y  V  G  G  T  I  Q  S  R  *  R  W  H  H  C  N  G  H  L  P  *  T  F  F  T  K  P  G  *  S  R  P  C  K  :  T  G  C  T  S  S  S  W  L  T  *  L  A  L  H  T  A  A  *  Y  A  E  R  T  G  H  T  P  V  *  *  E  A  G  R  R  E  N  E  N  I  Y  Q  H  Q  G  E  *  I  S  *  V  V  V  *  T  K  T  S  T  T  S  S  G  G  F  V  Y  C  H  R :   *  R  F  L  L  *  L  A  W  R  A  V  S  *  S  *  S  T  C  V  E  L  *  N  K  D  L  Q  I  T  P  F  Y  R  A  D  E  P  I  E  D  T  G  S  D  K  Q  W  F  L  P  S  Q  V  E  *  F  S  A  L  F  S  A  Q  S  *  E  N  Q  P  G  T  H  L  C  Y  I  H  Y  V  S  Q  S  A  A  T  K  F  A  Q  N  L  P  E  H  V  *  N  Q  G  G  I  *  E  L  C  C  Q  D  V  L  Y  V  A  K  T  R  *  D  *  Y  R  V  L  Q   </second_frame>
            <third_frame>   P  A  A  L  L  D  M  W  V  E  R  Y  N  L  D  E  D  G  I  T  A  M  A  I  F  L  E  L  S  S  Q  N  L  V  N  L  A  L  A  R :   Q  D  A  R  A  V  L  G  L  H  N  L  H  Y  I  Q  Q  H  D  M  L  R  E  L  V  I  H  Q  C  D  E  K  P  V  E  E  R  M  R  I  Y  I  N  I  K  G  N  E  F  P  R  W  W  F  E  Q  R  L  Q  P  L  Q  A  E  V  L  S  I  V  T   : D  E  D  F  S  C  N  W  H  G  V  Q  F  P  K  V  E  V  L  V  L  N  F  E  T  R  T  Y  K  L  P  P  F  I  E  Q  M  S  Q  L  K  T  L  V  L  T  N  N  G  F  F  P  A  K  L  N  N  F  Q  L  C  S  L  L  N  L  K  R  I  N  L  E  R  I  S  V  T  S  I  M  S  A  N  L  Q  L  P  N  L  R  K  I  S  L  N  M  C  E  I  R  E  A  F  E  N  S  A  A  K  M  S  Y  M  W  P  K  L  V  E  I  N  I  E  Y  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33836" stop="33718"/>
                    <exon start="33386" stop="33175"/>
                    <exon start="33061" stop="32685"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAALLDMWVERYNLDEDGITAMAIFLELSSQNLVNLALARQDARAVLGLHNLHYIQQHDMLRELVIHQCDEKPVEERMRIYINIKGNEFPRWWFEQRLQPLQAEVLSIVTDEDFSCNWHGVQFPKVEVLVLNFETRTYKLPPFIEQMSQLKTLVLTNNGFFPAKLNNFQLCSLLNLKRINLERISVTSIMSANLQLPNLRKISLNMCEIREAFENSAAKMSYMWPKLVEINIEYCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36094" PGL_stop="33851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36094" e_stop="35315"/>
            <exon e_start="34703" e_stop="34309"/>
            <exon e_start="34100" e_stop="33851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.966" e_score="0.905"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.924"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="36094" e_stop="35315" e_length="780"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.966">
            <gDNA_intron_boundary i_start="35314" i_stop="34704" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="34703" e_stop="34309" e_length="395"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="34308" i_stop="34101" i_length="208"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="34100" e_stop="33851" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36094" stop="35369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36073" stop="35315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36073" stop="35411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35396" stop="35315"/>
              <exon start="34703" stop="34309"/>
              <exon start="34100" stop="33925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34460" stop="34309"/>
              <exon start="34100" stop="33851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGACCTACTGCTATACTTCACTCGACTTCCCCCAAAATAATTCGTCTTGCAGTGTTACGTAGCAATGGCAGCAGCTCTCTTCGGAGGAGCTGCTTTGGGTCCAGTCTTCGACCAACTTCTCAAAGCAGTTATTGATTTTGGCGTAAACATTGCCACTTTCCGGTCCAAATTCCTCAGCTTGAAGCAGACATTGACCGACATCAAACCAGTATTCCATGACATTGAGAGGCTAAACGAGGCCCTAGACGGCCGTGATGAAGAAATAGACATGTTTAAGAAGCAGTTGATGAAAGGTGAAGAGCTAGTCCGCAAGTGTTCCAAGATTAAACGCTGCGACCCTTTGAAGAAGTGGAGTTACTCCAGGAAACTAACGAAGTTGGATAATTCACTAGTGAAGTTCTGCCAGATACACGGTTTAATTCAGGTGGTTAGGGATAGTAAACAGATTCTGGTTAAGGTTAATGAAAATGGCAAGAAATTGGAGGAGATCCACTCGATGATGAGAGATGTTTCATTGACGAGATCCGGGAGTAGTATTGGATTTACAAATTCTAGTGCTTCTTCAGGGTGGATGAATGGTTCTAGTTTTGGGTTTTCAGGATCGTCTGATGTGCCTCAAGTTTCTGATTCTATGGTTGGATTTGATGTCCCACTTCATGAACTGAAACAGAAATTGAAGGTGCTTCAGGAGAAAGATCAAGTGCTGGTTCTTTCTGCTCCTCCTGGCTGTGGAAAAACTACTTTGGCAGCAAGGCTTTGTCAAGAGGATGATATCAAAG : CCATATACAGGGACAACATCTTTTTTGTCACTGTTACCAAAACACCGAACATCAAACGCATTGTTGGGGAAATCTTTGAGAAGAAAGGCTTCAGGGTTCCAGAGTTTGCTAATGAGCATGATGCAATCTGCAAACTCAACAGCCTCCTTGGGGGAATCACTCCTCAACCAATATTACTGGTGCTGGATGATGTTTGGTCTGAATCAGAGTTCATCATCGATCATCTTAAATTACAGATATCTGATTTTAAGATTTTGGTCACTTCGAGATATGTATTCCCGAAATTTGATACATATAAATTAAAGCTTTTGAGCGAGGAGGACGCAAAGGATCTCTTCTGCATTTCAGCTTTTAAAGATGGCAGCCCTGATGTGCGGCTTAATCTTGTTCATAAG : GTGGTGAGAAGTTGTGGCGGTTTTCCACTGGCTCTTAGAGTTGTAGGTCGTTCATTGTGTGGCCAGTCTGAGGTGATATGGTTTAACAGAGTAATGATGCAGTCTAAAAGGCAAATTCTCTTCCCTACTGAGAATGATCTGCTTCGTTCTTTGCAAGCCAGCATTGATGCCTTGGATGAAAAAGTTCTTTACAGCAGAGAAACAACTACATTAAGAGACTGCTACCTGGATTTAGGATCATTTCCTGAAG</gDNA_template>
            <first_frame> T  T  Y  C  Y  T  S  L  D  F  P  Q  N  N  S  S  C  S  V  T  *  Q  W  Q  Q  L  S  S  E  E  L  L  W  V  Q  S  S  T  N  F  S  K  Q  L  L  I  L  A  *  T  L  P  L  S  G  P  N  S  S  A  *  S  R  H  *  P  T  S  N  Q  Y  S  M  T  L  R  G  *  T  R  P  *  T  A  V  M  K  K  *  T  C  L  R  S  S  *  *  K  V  K  S  *  S  A  S  V  P  R  L  N  A  A  T  L  *  R  S  G  V  T  P  G  N  *  R  S  W  I  I  H  *  *  S  S  A  R  Y  T  V  *  F  R  W  L  G  I  V  N  R  F  W  L  R  L  M  K  M  A  R  N  W  R  R  S  T  R  *  *  E  M  F  H  *  R  D  P  G  V  V  L  D  L  Q  I  L  V  L  L  Q  G  G  *  M  V  L  V  L  G  F  Q  D  R  L  M  C  L  K  F  L  I  L  W  L  D  L  M  S  H  F  M  N  *  N  R  N  *  R  C  F  R  R  K  I  K  C  W  F  F  L  L  L  L  A  V  E  K  L  L  W  Q  Q  G  F  V  K  R  M  I  S  K  :  P  Y  T  G  T  T  S  F  L  S  L  L  P  K  H  R  T  S  N  A  L  L  G  K  S  L  R  R  K  A  S  G  F  Q  S  L  L  M  S  M  M  Q  S  A  N  S  T  A  S  L  G  E  S  L  L  N  Q  Y  Y  W  C  W  M  M  F  G  L  N  Q  S  S  S  S  I  I  L  N  Y  R  Y  L  I  L  R  F  W  S  L  R  D  M  Y  S  R  N  L  I  H  I  N  *  S  F  *  A  R  R  T  Q  R  I  S  S  A  F  Q  L  L  K  M  A  A  L  M  C  G  L  I  L  F  I  R :   W  *  E  V  V  A  V  F  H  W  L  L  E  L  *  V  V  H  C  V  A  S  L  R  *  Y  G  L  T  E  *  *  C  S  L  K  G  K  F  S  S  L  L  R  M  I  C  F  V  L  C  K  P  A  L  M  P  W  M  K  K  F  F  T  A  E  K  Q  L  H  *  E  T  A  T  W  I  *  D  H  F  L  K </first_frame>
            <second_frame>  R  P  T  A  I  L  H  S  T  S  P  K  I  I  R  L  A  V  L  R  S  N  G  S  S  S  L  R  R  S  C  F  G  S  S  L  R  P  T  S  Q  S  S  Y  *  F  W  R  K  H  C  H  F  P  V  Q  I  P  Q  L  E  A  D  I  D  R  H  Q  T  S  I  P  *  H  *  E  A  K  R  G  P  R  R  P  *  *  R  N  R  H  V  *  E  A  V  D  E  R  *  R  A  S  P  Q  V  F  Q  D  *  T  L  R  P  F  E  E  V  E  L  L  Q  E  T  N  E  V  G  *  F  T  S  E  V  L  P  D  T  R  F  N  S  G  G  *  G  *  *  T  D  S  G  *  G  *  *  K  W  Q  E  I  G  G  D  P  L  D  D  E  R  C  F  I  D  E  I  R  E  *  Y  W  I  Y  K  F  *  C  F  F  R  V  D  E  W  F  *  F  W  V  F  R  I  V  *  C  A  S  S  F  *  F  Y  G  W  I  *  C  P  T  S  *  T  E  T  E  I  E  G  A  S  G  E  R  S  S  A  G  S  F  C  S  S  W  L  W  K  N  Y  F  G  S  K  A  L  S  R  G  *  Y  Q  S :   H  I  Q  G  Q  H  L  F  C  H  C  Y  Q  N  T  E  H  Q  T  H  C  W  G  N  L  *  E  E  R  L  Q  G  S  R  V  C  *  *  A  *  C  N  L  Q  T  Q  Q  P  P  W  G  N  H  S  S  T  N  I  T  G  A  G  *  C  L  V  *  I  R  V  H  H  R  S  S  *  I  T  D  I  *  F  *  D  F  G  H  F  E  I  C  I  P  E  I  *  Y  I  *  I  K  A  F  E  R  G  G  R  K  G  S  L  L  H  F  S  F  *  R  W  Q  P  *  C  A  A  *  S  C  S  *   : G  G  E  K  L  W  R  F  S  T  G  S  *  S  C  R  S  F  I  V  W  P  V  *  G  D  M  V  *  Q  S  N  D  A  V  *  K  A  N  S  L  P  Y  *  E  *  S  A  S  F  F  A  S  Q  H  *  C  L  G  *  K  S  S  L  Q  Q  R  N  N  Y  I  K  R  L  L  P  G  F  R  I  I  S  *   </second_frame>
            <third_frame>   D  L  L  L  Y  F  T  R  L  P  P  K  *  F  V  L  Q  C  Y  V  A  M  A  A  A  L  F  G  G  A  A  L  G  P  V  F  D  Q  L  L  K  A  V  I  D  F  G  V  N  I  A  T  F  R  S  K  F  L  S  L  K  Q  T  L  T  D  I  K  P  V  F  H  D  I  E  R  L  N  E  A  L  D  G  R  D  E  E  I  D  M  F  K  K  Q  L  M  K  G  E  E  L  V  R  K  C  S  K  I  K  R  C  D  P  L  K  K  W  S  Y  S  R  K  L  T  K  L  D  N  S  L  V  K  F  C  Q  I  H  G  L  I  Q  V  V  R  D  S  K  Q  I  L  V  K  V  N  E  N  G  K  K  L  E  E  I  H  S  M  M  R  D  V  S  L  T  R  S  G  S  S  I  G  F  T  N  S  S  A  S  S  G  W  M  N  G  S  S  F  G  F  S  G  S  S  D  V  P  Q  V  S  D  S  M  V  G  F  D  V  P  L  H  E  L  K  Q  K  L  K  V  L  Q  E  K  D  Q  V  L  V  L  S  A  P  P  G  C  G  K  T  T  L  A  A  R  L  C  Q  E  D  D  I  K   : A  I  Y  R  D  N  I  F  F  V  T  V  T  K  T  P  N  I  K  R  I  V  G  E  I  F  E  K  K  G  F  R  V  P  E  F  A  N  E  H  D  A  I  C  K  L  N  S  L  L  G  G  I  T  P  Q  P  I  L  L  V  L  D  D  V  W  S  E  S  E  F  I  I  D  H  L  K  L  Q  I  S  D  F  K  I  L  V  T  S  R  Y  V  F  P  K  F  D  T  Y  K  L  K  L  L  S  E  E  D  A  K  D  L  F  C  I  S  A  F  K  D  G  S  P  D  V  R  L  N  L  V  H  K  :  V  V  R  S  C  G  G  F  P  L  A  L  R  V  V  G  R  S  L  C  G  Q  S  E  V  I  W  F  N  R  V  M  M  Q  S  K  R  Q  I  L  F  P  T  E  N  D  L  L  R  S  L  Q  A  S  I  D  A  L  D  E  K  V  L  Y  S  R  E  T  T  T  L  R  D  C  Y  L  D  L  G  S  F  P  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36053" stop="35315"/>
                    <exon start="34703" stop="34309"/>
                    <exon start="34100" stop="33852"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1383</number_coding_nucleotides>
                  <number_encoded_amino_acids>461</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVLQCYVAMAAALFGGAALGPVFDQLLKAVIDFGVNIATFRSKFLSLKQTLTDIKPVFHDIERLNEALDGRDEEIDMFKKQLMKGEELVRKCSKIKRCDPLKKWSYSRKLTKLDNSLVKFCQIHGLIQVVRDSKQILVKVNENGKKLEEIHSMMRDVSLTRSGSSIGFTNSSASSGWMNGSSFGFSGSSDVPQVSDSMVGFDVPLHELKQKLKVLQEKDQVLVLSAPPGCGKTTLAARLCQEDDIKAIYRDNIFFVTVTKTPNIKRIVGEIFEKKGFRVPEFANEHDAICKLNSLLGGITPQPILLVLDDVWSESEFIIDHLKLQISDFKILVTSRYVFPKFDTYKLKLLSEEDAKDLFCISAFKDGSPDVRLNLVHKVVRSCGGFPLALRVVGRSLCGQSEVIWFNRVMMQSKRQILFPTENDLLRSLQASIDALDEKVLYSRETTTLRDCYLDLGSFPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="40521" PGL_stop="39714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40521" e_stop="39714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="40521" e_stop="39714" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40521" stop="39714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTAGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  *  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  S  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40519" stop="39716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41180" PGL_stop="40532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41180" e_stop="40532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="41180" e_stop="40532" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41180" stop="40532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41179" stop="40795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCACTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  T  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  L  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41179" stop="40532"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEATLSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46002" PGL_stop="43585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45902" e_stop="45819"/>
            <exon e_start="45735" e_stop="45670"/>
            <exon e_start="45322" e_stop="45136"/>
            <exon e_start="44289" e_stop="44078"/>
            <exon e_start="43977" e_stop="43585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45902" e_stop="45819" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45818" i_stop="45736" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45735" e_stop="45670" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.876">
            <gDNA_intron_boundary i_start="45669" i_stop="45323" i_length="347"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45322" e_stop="45136" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45135" i_stop="44290" i_length="846"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44289" e_stop="44078" e_length="212"/>
          </exon>
          <intron i_serial="4" don_prob="0.656" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44077" i_stop="43978" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="43977" e_stop="43585" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45902" stop="45819"/>
              <exon start="45735" stop="45670"/>
              <exon start="45322" stop="45136"/>
              <exon start="44289" stop="44078"/>
              <exon start="43977" stop="43738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44166" stop="44078"/>
              <exon start="43977" stop="43585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCCAGCCTTCAGTATGCAGCAGCAGACTACTACTTCAACAGATTCTCCAACTCCTCAACTTGAAAACCATTCAGATTCAG : AATCCAACCTGCACACTTCAACAGACTCTCCAACACCTGATGTAAATGTTGGCAAAACTAGTACAG : ATATACTCAGAGATGTAATTTTATGGAAGAGGAAGAGTTTTACTGTTGCTGCGCTATTAGCAGCTACAGCGATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAA : AGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTG : GTATTGTGATGGGACTGACTGTACCGGTTGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGCAACTGAGAGATGTCGCATGTATTACAGCTCCATAGCGGAGAGGGTCGAGAAAATGAAGAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATATTTGTAGTTAGTTTTTATATTTTTAGTTAGTTTTTACTTGGTTATTAGTAGTAATATATTTAGTTAGTTTTTTACTTGGTTATTAGTAGTAATAACAATGTTTTTACGAAAGCATCAAGAGATTAAATAGGATTGAAGTATTCGTCAACTAACTCTTGGTAAACTAGATTATGCGCG</gDNA_template>
            <first_frame> *  I  Q  P  S  V  C  S  S  R  L  L  L  Q  Q  I  L  Q  L  L  N  L  K  T  I  Q  I  Q  :  N  P  T  C  T  L  Q  Q  T  L  Q  H  L  M  *  M  L  A  K  L  V  Q  :  I  Y  S  E  M  *  F  Y  G  R  G  R  V  L  L  L  L  R  Y  *  Q  L  Q  R  Y  G  W  H  L  K  S  M  D  *  P  L  *  R  C  F  H  G  S  P  C  S  S  S  F  P  P  F  Y  G  A  T  Y  I  C  S  W  G   : K  S  P  W  T  C  Q  G  C  T  *  A  M  N  Q  L  W  K  Q  E  S  N  F  V  N  Q  L  R  I  A  *  G  F  C  L  T  *  V  P  R  E  S  G  S  S  L  L  G  L  *  L  L  W  D  C  F  L  L  W  E  V  T  *  I  Y  L  R  F  S  T  L  :  V  L  *  W  D  *  L  Y  R  L  Y  M  *  N  M  K  T  E  L  R  T  W  G  S  E  Q  G  S  D  A  T  Y  I  T  A  R  Q  L  R  D  V  A  C  I  T  A  P  *  R  R  G  S  R  K  *  R  A  S  C  S  R  R  K  R  K  K  M  S  S  P  Y  I  F  V  V  S  F  Y  I  F  S  *  F  L  L  G  Y  *  *  *  Y  I  *  L  V  F  Y  L  V  I  S  S  N  N  N  V  F  T  K  A  S  R  D  *  I  G  L  K  Y  S  S  T  N  S  W  *  T  R  L  C  A </first_frame>
            <second_frame>  E  S  S  L  Q  Y  A  A  A  D  Y  Y  F  N  R  F  S  N  S  S  T  *  K  P  F  R  F  R :   I  Q  P  A  H  F  N  R  L  S  N  T  *  C  K  C  W  Q  N  *  Y  R :   Y  T  Q  R  C  N  F  M  E  E  E  E  F  Y  C  C  C  A  I  S  S  Y  S  D  M  A  G  T  *  S  L  W  I  D  L  Y  N  A  V  F  M  D  R  H  V  P  H  R  F  H  L  F  M  G  Q  H  T  Y  A  L  G  E  :  R  A  P  G  H  V  K  D  V  H  K  R  *  I  S  C  G  S  R  N  Q  I  S  *  I  S  *  E  *  P  E  V  S  V  *  R  E  Y  Q  E  R  V  V  R  L  C  W  D  C  S  F  F  G  I  A  F  C  C  G  K  L  L  R  F  T  Y  A  S  L  H  W :   Y  C  D  G  T  D  C  T  G  C  I  C  E  I  *  R  Q  N  *  G  L  G  A  A  S  K  G  P  M  P  H  I  *  Q  R  G  N  *  E  M  S  H  V  L  Q  L  H  S  G  E  G  R  E  N  E  E  Q  V  A  A  E  E  K  E  K  K  *  V  V  R  I  Y  L  *  L  V  F  I  F  L  V  S  F  Y  L  V  I  S  S  N  I  F  S  *  F  F  T  W  L  L  V  V  I  T  M  F  L  R  K  H  Q  E  I  K  *  D  *  S  I  R  Q  L  T  L  G  K  L  D  Y  A   </second_frame>
            <third_frame>   N  P  A  F  S  M  Q  Q  Q  T  T  T  S  T  D  S  P  T  P  Q  L  E  N  H  S  D  S   : E  S  N  L  H  T  S  T  D  S  P  T  P  D  V  N  V  G  K  T  S  T   : D  I  L  R  D  V  I  L  W  K  R  K  S  F  T  V  A  A  L  L  A  A  T  A  I  W  L  A  L  E  V  Y  G  L  T  F  I  T  L  F  S  W  I  A  M  F  L  I  V  S  T  F  L  W  G  N  I  H  M  L  L  G  K :   E  P  L  D  M  S  R  M  Y  I  S  D  E  S  V  V  E  A  G  I  K  F  R  E  S  V  E  N  S  L  R  F  L  F  N  V  S  T  K  R  E  W  F  V  F  A  G  T  V  A  S  L  G  L  L  S  V  V  G  S  Y  L  D  L  L  T  L  L  Y  I   : G  I  V  M  G  L  T  V  P  V  V  Y  V  K  Y  E  D  R  I  K  D  L  G  Q  R  A  R  V  R  C  H  I  Y  N  S  A  A  T  E  R  C  R  M  Y  Y  S  S  I  A  E  R  V  E  K  M  K  S  K  L  Q  Q  K  K  K  K  K  N  E  *  S  V  Y  I  C  S  *  F  L  Y  F  *  L  V  F  T  W  L  L  V  V  I  Y  L  V  S  F  L  L  G  Y  *  *  *  *  Q  C  F  Y  E  S  I  K  R  L  N  R  I  E  V  F  V  N  *  L  L  V  N  *  I  M  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45900" stop="45819"/>
                    <exon start="45735" stop="45670"/>
                    <exon start="45322" stop="45136"/>
                    <exon start="44289" stop="44078"/>
                    <exon start="43977" stop="43772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPAFSMQQQTTTSTDSPTPQLENHSDSESNLHTSTDSPTPDVNVGKTSTDILRDVILWKRKSFTVAALLAATAIWLALEVYGLTFITLFSWIAMFLIVSTFLWGNIHMLLGKEPLDMSRMYISDESVVEAGIKFRESVENSLRFLFNVSTKREWFVFAGTVASLGLLSVVGSYLDLLTLLYIGIVMGLTVPVVYVKYEDRIKDLGQRARVRCHIYNSAATERCRMYYSSIAERVEKMKSKLQQKKKKKNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46002" e_stop="46002"/>
            <exon e_start="45893" e_stop="45819"/>
            <exon e_start="45735" e_stop="45670"/>
            <exon e_start="45322" e_stop="45136"/>
            <exon e_start="44289" e_stop="44078"/>
            <exon e_start="43977" e_stop="43585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.324" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.656" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46002" e_stop="46002" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.324">
            <gDNA_intron_boundary i_start="46001" i_stop="45894" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="45893" e_stop="45819" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45818" i_stop="45736" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45735" e_stop="45670" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.876">
            <gDNA_intron_boundary i_start="45669" i_stop="45323" i_length="347"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45322" e_stop="45136" e_length="187"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45135" i_stop="44290" i_length="846"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44289" e_stop="44078" e_length="212"/>
          </exon>
          <intron i_serial="5" don_prob="0.656" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44077" i_stop="43978" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="43977" e_stop="43585" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46002" stop="46002"/>
              <exon start="45893" stop="45819"/>
              <exon start="45735" stop="45670"/>
              <exon start="45322" stop="45136"/>
              <exon start="44289" stop="44078"/>
              <exon start="43977" stop="43686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44166" stop="44078"/>
              <exon start="43977" stop="43585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>C : CCTTCAGTATGCAGCAGCAGACTACTACTTCAACAGATTCTCCAACTCCTCAACTTGAAAACCATTCAGATTCAG : AATCCAACCTGCACACTTCAACAGACTCTCCAACACCTGATGTAAATGTTGGCAAAACTAGTACAG : ATATACTCAGAGATGTAATTTTATGGAAGAGGAAGAGTTTTACTGTTGCTGCGCTATTAGCAGCTACAGCGATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAA : AGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTG : GTATTGTGATGGGACTGACTGTACCGGTTGTATATGTGAAATATGAAGACAGAATTAAGGACTTGGGGCAGCGAGCAAGGGTCCGATGCCACATATATAACAGCGCGGCAACTGAGAGATGTCGCATGTATTACAGCTCCATAGCGGAGAGGGTCGAGAAAATGAAGAGCAAGTTGCAGCAGAAGAAAAAGAAAAAAAATGAGTAGTCCGTATATATTTGTAGTTAGTTTTTATATTTTTAGTTAGTTTTTACTTGGTTATTAGTAGTAATATATTTAGTTAGTTTTTTACTTGGTTATTAGTAGTAATAACAATGTTTTTACGAAAGCATCAAGAGATTAAATAGGATTGAAGTATTCGTCAACTAACTCTTGGTAAACTAGATTATGCGCG</gDNA_template>
            <first_frame>  : P  F  S  M  Q  Q  Q  T  T  T  S  T  D  S  P  T  P  Q  L  E  N  H  S  D  S   : E  S  N  L  H  T  S  T  D  S  P  T  P  D  V  N  V  G  K  T  S  T   : D  I  L  R  D  V  I  L  W  K  R  K  S  F  T  V  A  A  L  L  A  A  T  A  I  W  L  A  L  E  V  Y  G  L  T  F  I  T  L  F  S  W  I  A  M  F  L  I  V  S  T  F  L  W  G  N  I  H  M  L  L  G  K :   E  P  L  D  M  S  R  M  Y  I  S  D  E  S  V  V  E  A  G  I  K  F  R  E  S  V  E  N  S  L  R  F  L  F  N  V  S  T  K  R  E  W  F  V  F  A  G  T  V  A  S  L  G  L  L  S  V  V  G  S  Y  L  D  L  L  T  L  L  Y  I   : G  I  V  M  G  L  T  V  P  V  V  Y  V  K  Y  E  D  R  I  K  D  L  G  Q  R  A  R  V  R  C  H  I  Y  N  S  A  A  T  E  R  C  R  M  Y  Y  S  S  I  A  E  R  V  E  K  M  K  S  K  L  Q  Q  K  K  K  K  K  N  E  *  S  V  Y  I  C  S  *  F  L  Y  F  *  L  V  F  T  W  L  L  V  V  I  Y  L  V  S  F  L  L  G  Y  *  *  *  *  Q  C  F  Y  E  S  I  K  R  L  N  R  I  E  V  F  V  N  *  L  L  V  N  *  I  M  R  </first_frame>
            <second_frame>  :  P  S  V  C  S  S  R  L  L  L  Q  Q  I  L  Q  L  L  N  L  K  T  I  Q  I  Q  :  N  P  T  C  T  L  Q  Q  T  L  Q  H  L  M  *  M  L  A  K  L  V  Q  :  I  Y  S  E  M  *  F  Y  G  R  G  R  V  L  L  L  L  R  Y  *  Q  L  Q  R  Y  G  W  H  L  K  S  M  D  *  P  L  *  R  C  F  H  G  S  P  C  S  S  S  F  P  P  F  Y  G  A  T  Y  I  C  S  W  G   : K  S  P  W  T  C  Q  G  C  T  *  A  M  N  Q  L  W  K  Q  E  S  N  F  V  N  Q  L  R  I  A  *  G  F  C  L  T  *  V  P  R  E  S  G  S  S  L  L  G  L  *  L  L  W  D  C  F  L  L  W  E  V  T  *  I  Y  L  R  F  S  T  L  :  V  L  *  W  D  *  L  Y  R  L  Y  M  *  N  M  K  T  E  L  R  T  W  G  S  E  Q  G  S  D  A  T  Y  I  T  A  R  Q  L  R  D  V  A  C  I  T  A  P  *  R  R  G  S  R  K  *  R  A  S  C  S  R  R  K  R  K  K  M  S  S  P  Y  I  F  V  V  S  F  Y  I  F  S  *  F  L  L  G  Y  *  *  *  Y  I  *  L  V  F  Y  L  V  I  S  S  N  N  N  V  F  T  K  A  S  R  D  *  I  G  L  K  Y  S  S  T  N  S  W  *  T  R  L  C  A </second_frame>
            <third_frame>  :   L  Q  Y  A  A  A  D  Y  Y  F  N  R  F  S  N  S  S  T  *  K  P  F  R  F  R :   I  Q  P  A  H  F  N  R  L  S  N  T  *  C  K  C  W  Q  N  *  Y  R :   Y  T  Q  R  C  N  F  M  E  E  E  E  F  Y  C  C  C  A  I  S  S  Y  S  D  M  A  G  T  *  S  L  W  I  D  L  Y  N  A  V  F  M  D  R  H  V  P  H  R  F  H  L  F  M  G  Q  H  T  Y  A  L  G  E  :  R  A  P  G  H  V  K  D  V  H  K  R  *  I  S  C  G  S  R  N  Q  I  S  *  I  S  *  E  *  P  E  V  S  V  *  R  E  Y  Q  E  R  V  V  R  L  C  W  D  C  S  F  F  G  I  A  F  C  C  G  K  L  L  R  F  T  Y  A  S  L  H  W :   Y  C  D  G  T  D  C  T  G  C  I  C  E  I  *  R  Q  N  *  G  L  G  A  A  S  K  G  P  M  P  H  I  *  Q  R  G  N  *  E  M  S  H  V  L  Q  L  H  S  G  E  G  R  E  N  E  E  Q  V  A  A  E  E  K  E  K  K  *  V  V  R  I  Y  L  *  L  V  F  I  F  L  V  S  F  Y  L  V  I  S  S  N  I  F  S  *  F  F  T  W  L  L  V  V  I  T  M  F  L  R  K  H  Q  E  I  K  *  D  *  S  I  R  Q  L  T  L  G  K  L  D  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46002" stop="45819"/>
                    <exon start="45735" stop="45670"/>
                    <exon start="45322" stop="45136"/>
                    <exon start="44289" stop="44078"/>
                    <exon start="43977" stop="43772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSMQQQTTTSTDSPTPQLENHSDSESNLHTSTDSPTPDVNVGKTSTDILRDVILWKRKSFTVAALLAATAIWLALEVYGLTFITLFSWIAMFLIVSTFLWGNIHMLLGKEPLDMSRMYISDESVVEAGIKFRESVENSLRFLFNVSTKREWFVFAGTVASLGLLSVVGSYLDLLTLLYIGIVMGLTVPVVYVKYEDRIKDLGQRARVRCHIYNSAATERCRMYYSSIAERVEKMKSKLQQKKKKKNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45252" e_stop="45136"/>
            <exon e_start="44289" e_stop="44012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45252" e_stop="45136" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45135" i_stop="44290" i_length="846"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="44289" e_stop="44012" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45252" stop="45136"/>
              <exon start="44289" stop="44012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATATGGCTGGCACTTGAAGTCTATGGATTGACCTTTATAACGCTGTTTTCATGGATCGCCATGTTCCTCATCGTTTCCACCTTTTTATGGGGCAACATACATATGCTCTTGGGGAA : AGAGCCCCTGGACATGTCAAGGATGTACATAAGCGATGAATCAGTTGTGGAAGCAGGAATCAAATTTCGTGAATCAGTTGAGAATAGCCTGAGGTTTCTGTTTAACGTGAGTACCAAGAGAGAGTGGTTCGTCTTTGCTGGGACTGTAGCTTCTTTGGGATTGCTTTCTGTTGTGGGAAGTTACTTAGATTTACTTACGCTTCTCTACATTGGTAATTACAATACTACTTATATGATTAACTAGTAAGTAATTTATTTACCTACTGATGTTTTAGTAC</gDNA_template>
            <first_frame> D  M  A  G  T  *  S  L  W  I  D  L  Y  N  A  V  F  M  D  R  H  V  P  H  R  F  H  L  F  M  G  Q  H  T  Y  A  L  G  E  :  R  A  P  G  H  V  K  D  V  H  K  R  *  I  S  C  G  S  R  N  Q  I  S  *  I  S  *  E  *  P  E  V  S  V  *  R  E  Y  Q  E  R  V  V  R  L  C  W  D  C  S  F  F  G  I  A  F  C  C  G  K  L  L  R  F  T  Y  A  S  L  H  W  *  L  Q  Y  Y  L  Y  D  *  L  V  S  N  L  F  T  Y  *  C  F  S   </first_frame>
            <second_frame>  I  W  L  A  L  E  V  Y  G  L  T  F  I  T  L  F  S  W  I  A  M  F  L  I  V  S  T  F  L  W  G  N  I  H  M  L  L  G  K :   E  P  L  D  M  S  R  M  Y  I  S  D  E  S  V  V  E  A  G  I  K  F  R  E  S  V  E  N  S  L  R  F  L  F  N  V  S  T  K  R  E  W  F  V  F  A  G  T  V  A  S  L  G  L  L  S  V  V  G  S  Y  L  D  L  L  T  L  L  Y  I  G  N  Y  N  T  T  Y  M  I  N  *  *  V  I  Y  L  P  T  D  V  L  V  </second_frame>
            <third_frame>   Y  G  W  H  L  K  S  M  D  *  P  L  *  R  C  F  H  G  S  P  C  S  S  S  F  P  P  F  Y  G  A  T  Y  I  C  S  W  G   : K  S  P  W  T  C  Q  G  C  T  *  A  M  N  Q  L  W  K  Q  E  S  N  F  V  N  Q  L  R  I  A  *  G  F  C  L  T  *  V  P  R  E  S  G  S  S  L  L  G  L  *  L  L  W  D  C  F  L  L  W  E  V  T  *  I  Y  L  R  F  S  T  L  V  I  T  I  L  L  I  *  L  T  S  K  *  F  I  Y  L  L  M  F  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45251" stop="45136"/>
                    <exon start="44289" stop="44046"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLALEVYGLTFITLFSWIAMFLIVSTFLWGNIHMLLGKEPLDMSRMYISDESVVEAGIKFRESVENSLRFLFNVSTKREWFVFAGTVASLGLLSVVGSYLDLLTLLYIGNYNTTYMIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52427" PGL_stop="55442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52427" e_stop="52669"/>
            <exon e_start="52761" e_stop="52870"/>
            <exon e_start="53188" e_stop="53458"/>
            <exon e_start="53547" e_stop="53643"/>
            <exon e_start="53754" e_stop="54099"/>
            <exon e_start="54251" e_stop="54616"/>
            <exon e_start="54713" e_stop="54791"/>
            <exon e_start="55007" e_stop="55442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.303" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52669" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52761" e_stop="52870" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.975">
            <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53188" e_stop="53458" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53547" e_stop="53643" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.303">
            <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53754" e_stop="54099" e_length="346"/>
          </exon>
          <intron i_serial="5" don_prob="0.812" acc_prob="0.985">
            <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54251" e_stop="54616" e_length="366"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.899">
            <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54713" e_stop="54791" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55007" e_stop="55442" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52429" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52433" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52434" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52439" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52445" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52446" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52459" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52472" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52474" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52494" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52531" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52533" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52561" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52561" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52776" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52779" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52779" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52784" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52850" stop="52870"/>
              <exon start="53188" stop="53438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53219" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53220" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53276" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53276" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53276" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53287" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53288" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53299" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53326" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53401" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53401" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53550" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53554" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53563" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53569" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53569" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53578" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53595" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53595" stop="53643"/>
              <exon start="53754" stop="53949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53604" stop="53643"/>
              <exon start="53754" stop="54099"/>
              <exon start="54251" stop="54380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53854" stop="54099"/>
              <exon start="54251" stop="54260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53869" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54018" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54018" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54021" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54021" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54034" stop="54099"/>
              <exon start="54251" stop="54584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="54099"/>
              <exon start="54251" stop="54583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="54099"/>
              <exon start="54251" stop="54480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54342" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577701" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54419" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54441" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425853" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54515" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54518" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54738" stop="54791"/>
              <exon start="55007" stop="55436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55050" stop="55403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG : GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG : GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG : GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG : GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG : GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG : TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG : GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAAATTACT</gDNA_template>
            <first_frame> N  T  T  L  I  Y  V  *  S  S  L  D  L  S  Y  S  S  S  F  I  L  S  I  F  T  T  I  S  L  S  I  A  P  M  G  N  V  A  L  F  H  L  I  C  G  I  F  I  F  W  S  V  S  L  V  K  A  E  D  T  Y  K  Y  F  T  W  T  A  T  Y  G  T  L  Y  P  L  G  V  P  Q  Q  :  V  I  L  I  N  G  Q  F  P  G  P  R  L  D  L  V  T  N  D  N  V  I  L  N  L  I  N  K  L  D  E  P  L  L  L  T  W :   N  G  I  K  Q  R  K  N  S  W  Q  D  G  V  L  G  T  N  C  P  I  P  I  N  S  N  Y  T  Y  K  F  Q  T  K  D  Q  I  G  S  Y  T  Y  F  P  S  T  Q  L  H  R  A  V  G  G  F  G  A  L  N  V  Y  A  R  S  V  I  P  V  P  Y  A  K  P  A  G  D  F  S  L  L  I  G  D  W  Y  K  S  S  H  K  :  V  L  R  Q  I  L  D  S  G  R  S  L  P  Y  P  N  D  L  L  I  N  G  Q  K  Q  S  T  F  S  G  D  Q   : G  K  T  Y  M  F  R  I  S  N  V  G  L  K  N  S  I  N  F  R  I  Q  G  H  K  M  R  V  V  E  I  E  G  S  H  V  L  Q  N  F  Y  D  S  L  D  V  H  V  G  Q  S  M  S  V  L  V  T  L  D  Q  P  P  K  D  Y  Y  I  V  A  S  T  R  F  S  R  I  S  F  T  A  T  S  V  L  H  Y  T  N  S  Q  T  P  V  S  G  P  V  P  P  A  P  T  G  Q  M  H  W  S  M  L  Q  A  R  T  F  R :   W  N  L  T  S  N  A  A  R  P  N  P  Q  G  S  F  H  Y  G  K  I  T  I  S  R  T  F  V  M  A  N  S  A  P  L  I  N  G  K  L  R  Y  A  V  N  S  V  S  Y  V  N  P  D  T  P  L  K  L  A  D  H  F  N  I  P  G  V  F  N  L  N  S  I  Q  A  Y  P  S  G  G  S  P  N  L  G  T  A  V  F  P  T  S  H  H  D  F  I  E  I  V  F  Q  N  D  E  A  T  M  Q  S  W  H  L  D  G  Y  D  F  W  V  V  G :   F  G  S  G  K  W  T  Q  A  S  R  N  K  Y  N  L  V  D  A  L  T  R  H  T  T  Q  :  V  Y  P  K  S  W  T  A  I  L  V  S  L  D  N  Q  G  M  W  N  L  R  S  A  M  W  D  R  Q  Y  L  G  Q  Q  V  Y  L  R  V  Y  D  P  T  P  S  L  A  N  E  Y  D  I  P  T  N  A  L  L  C  G  K  A  A  G  R  H  T  *  F  D  E  F  Y  T  *  A  F  V  F  Y  W  S  *  E  V  D  *  Q  R  L  R  Q  N  R  T  L  G  R  L  C  C  N  H  I  P  L  Y  F  I  F  L  V  V  G  H  T  S  F  L  K  C  S  *  Y  K  V  H  C  T  *  K  F  L  V  L  N  I  A  N  N  C  D  Q  N  Y  </first_frame>
            <second_frame>  I  L  L  *  F  M  S  N  P  H  *  I  Y  H  T  V  L  H  S  F  F  L  F  L  Q  L  F  L  *  A  L  L  Q  W  G  M  L  H  F  F  I  *  F  V  E  F  S  F  F  G  V  F  L  W  *  K  Q  R  I  L  I  N  I  S  H  G  L  L  L  M  E  L  F  I  L  L  V  F  L  N  R :   *  S  S  L  M  V  N  F  L  V  Q  D  L  T  L  L  Q  M  T  M  *  F  S  I  *  L  I  S  W  M  N  L  F  C  *  H   : G  M  E  S  N  K  E  R  I  L  G  K  M  E  F  W  E  Q  T  V  P  F  L  *  I  Q  I  T  L  T  S  S  K  Q  K  T  R  L  E  V  T  H  I  S  L  Q  L  N  C  I  E  L  L  E  V  S  E  H  L  T  C  M  R  D  L  *  S  Q  F  H  M  L  N  L  L  E  I  S  V  Y  L  L  V  I  G  T  R  A  V  I  R :   Y  *  G  K  Y  W  T  Q  G  G  L  F  L  T  Q  M  T  S  *  *  M  D  R  S  S  L  P  S  V  V  I  K  :  E  R  H  I  C  S  G  F  Q  M  *  A  *  K  I  P  L  T  S  E  F  R  A  I  R  *  G  L  S  R  L  K  D  P  T  S  C  R  T  S  M  I  L  L  M  S  M  L  V  N  L  C  L  S  L  S  H  *  I  S  L  Q  R  T  T  I  L  L  L  L  Q  G  S  P  G  *  V  L  L  P  L  Q  F  S  T  T  L  T  L  R  H  P  F  L  D  P  C  H  L  L  Q  L  D  K  C  I  G  R  C  C  K  P  E  H  L   : G  G  I  *  H  Q  M  Q  L  G  Q  I  L  R  V  H  S  I  M  E  K  L  Q  Y  Q  G  L  L  L  W  L  I  Q  H  L  L  S  M  E  S  *  D  M  L  S  I  V  C  L  M  L  I  L  I  L  H  L  S  L  L  I  T  S  T  S  P  E  C  S  T  *  T  P  F  K  L  I  P  L  V  V  R  L  T  *  A  Q  L  Y  F  Q  L  L  T  M  I  S  S  K  L  F  S  K  T  M  R  P  P  C  N  P  G  I  L  M  A  M  I  S  G  L  *   : V  L  D  L  A  N  G  H  K  Q  V  E  I  S  T  I  L  L  M  L  *  L  D  I  L  H  R :   Y  I  P  N  L  G  L  R  Y  W  C  P  W  T  T  K  E  C  G  I  *  D  Q  L  C  G  I  D  N  I  L  D  N  K  C  T  S  E  C  T  T  Q  P  Q  V  *  L  M  N  M  T  Y  Q  L  M  L  F  F  V  A  K  L  L  V  D  I  L  N  L  M  S  F  I  H  R  L  L  F  F  T  G  H  E  R  L  T  S  R  D  C  G  K  T  E  H  L  A  A  Y  V  V  I  T  Y  L  C  I  L  F  F  *  L  L  A  T  L  V  F  *  N  A  A  N  T  K  F  I  V  L  K  N  S  *  F  *  I  *  Q  T  I  V  I  K  I  T </second_frame>
            <third_frame>   Y  Y  S  N  L  C  L  I  L  T  R  S  I  I  Q  F  F  I  H  S  F  Y  F  Y  N  Y  F  F  K  H  C  S  N  G  E  C  C  T  F  S  F  D  L  W  N  F  H  F  L  E  C  F  S  G  E  S  R  G  Y  L  *  I  F  H  M  D  C  Y  L  W  N  S  L  S  S  W  C  S  S  T   : G  D  P  H  *  W  S  I  S  W  S  K  T  *  P  C  Y  K  *  Q  C  N  S  Q  S  D  *  *  V  G  *  T  S  S  V  D  M  :  E  W  N  Q  T  K  K  E  F  L  A  R  W  S  F  G  N  K  L  S  H  S  Y  K  F  K  L  H  L  Q  V  P  N  K  R  P  D  W  K  L  H  I  F  P  F  N  S  I  A  *  S  C  W  R  F  R  S  T  *  R  V  C  E  I  C  N  P  S  S  I  C  *  T  C  W  R  F  Q  F  T  Y  W  *  L  V  Q  E  Q  S  *   : G  I  E  A  N  I  G  L  R  E  V  S  S  L  P  K  *  P  P  N  K  W  T  E  A  V  Y  L  Q  W  *  S  R :   K  D  I  Y  V  Q  D  F  K  C  R  L  E  K  F  H  *  L  Q  N  S  G  P  *  D  E  G  C  R  D  *  R  I  P  R  L  A  E  L  L  *  F  S  *  C  P  C  W  S  I  Y  V  C  P  C  H  I  R  S  A  S  K  G  L  L  Y  C  C  F  Y  K  V  L  Q  D  K  F  Y  C  H  F  S  S  P  L  H  *  L  S  D  T  R  F  W  T  R  A  T  C  S  N  W  T  N  A  L  V  D  V  A  S  Q  N  I  *  :  V  E  S  D  I  K  C  S  *  A  K  S  S  G  F  I  P  L  W  K  N  Y  N  I  K  D  F  C  Y  G  *  F  S  T  S  Y  Q  W  K  A  E  I  C  C  Q  *  C  V  L  C  *  S  *  Y  S  T  *  A  C  *  S  L  Q  H  P  R  S  V  Q  L  E  L  H  S  S  L  S  L  W  W  F  A  *  L  R  H  S  C  I  S  N  F  S  P  *  F  H  R  N  C  F  P  K  R  *  G  H  H  A  I  L  A  S  *  W  L  *  F  L  G  C  R  :  F  W  I  W  Q  M  D  T  S  K  *  K  *  V  Q  S  C  *  C  S  D  *  T  Y  Y  T   : G  I  S  Q  I  L  D  C  D  I  G  V  L  G  Q  P  R  N  V  E  F  E  I  S  Y  V  G  *  T  I  S  W  T  T  S  V  P  Q  S  V  R  P  N  P  K  S  S  *  *  I  *  H  T  N  *  C  S  S  L  W  Q  S  C  W  *  T  Y  L  I  *  *  V  L  Y  I  G  F  C  F  L  L  V  M  R  G  *  L  A  E  I  A  A  K  Q  N  T  W  P  L  M  L  *  S  H  T  F  V  F  Y  F  F  S  C  W  P  H  *  F  F  E  M  Q  L  I  Q  S  S  L  Y  L  K  I  P  S  S  K  Y  S  K  Q  L  *  S  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52451" stop="52669"/>
                    <exon start="52761" stop="52870"/>
                    <exon start="53188" stop="53458"/>
                    <exon start="53547" stop="53643"/>
                    <exon start="53754" stop="54099"/>
                    <exon start="54251" stop="54616"/>
                    <exon start="54713" stop="54791"/>
                    <exon start="55007" stop="55210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1689</number_coding_nucleotides>
                  <number_encoded_amino_acids>563</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLDLSYSSSFILSIFTTISLSIAPMGNVALFHLICGIFIFWSVSLVKAEDTYKYFTWTATYGTLYPLGVPQQVILINGQFPGPRLDLVTNDNVILNLINKLDEPLLLTWNGIKQRKNSWQDGVLGTNCPIPINSNYTYKFQTKDQIGSYTYFPSTQLHRAVGGFGALNVYARSVIPVPYAKPAGDFSLLIGDWYKSSHKVLRQILDSGRSLPYPNDLLINGQKQSTFSGDQGKTYMFRISNVGLKNSINFRIQGHKMRVVEIEGSHVLQNFYDSLDVHVGQSMSVLVTLDQPPKDYYIVASTRFSRISFTATSVLHYTNSQTPVSGPVPPAPTGQMHWSMLQARTFRWNLTSNAARPNPQGSFHYGKITISRTFVMANSAPLINGKLRYAVNSVSYVNPDTPLKLADHFNIPGVFNLNSIQAYPSGGSPNLGTAVFPTSHHDFIEIVFQNDEATMQSWHLDGYDFWVVGFGSGKWTQASRNKYNLVDALTRHTTQVYPKSWTAILVSLDNQGMWNLRSAMWDRQYLGQQVYLRVYDPTPSLANEYDIPTNALLCGKAAGRHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52427" e_stop="52669"/>
            <exon e_start="52761" e_stop="52870"/>
            <exon e_start="53188" e_stop="53458"/>
            <exon e_start="53547" e_stop="53643"/>
            <exon e_start="53754" e_stop="54099"/>
            <exon e_start="54251" e_stop="54791"/>
            <exon e_start="55007" e_stop="55436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.303" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52669" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52761" e_stop="52870" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.975">
            <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53188" e_stop="53458" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53547" e_stop="53643" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.303">
            <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53754" e_stop="54099" e_length="346"/>
          </exon>
          <intron i_serial="5" don_prob="0.812" acc_prob="0.985">
            <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54251" e_stop="54791" e_length="541"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55007" e_stop="55436" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52429" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52433" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52434" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52439" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52445" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52446" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52459" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52472" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52474" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52494" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52531" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52533" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52561" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52561" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52776" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52779" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52779" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52784" stop="52870"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52850" stop="52870"/>
              <exon start="53188" stop="53438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53219" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53220" stop="53458"/>
              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="53889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="53547" stop="53643"/>
              <exon start="53754" stop="54034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="53754" stop="53951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53287" stop="53458"/>
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              <exon start="54251" stop="54465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="53754" stop="53863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53326" stop="53458"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53401" stop="53458"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212497" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53563" stop="53643"/>
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            <referenceDNA id="SGN-E366184" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393290" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E209414" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E203811" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E240399" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53595" stop="53643"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E241557" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53854" stop="54099"/>
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            <referenceDNA id="SGN-E243881" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54034" stop="54099"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241954" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231096" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54264" stop="54788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302262" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54712" stop="54791"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254870" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54738" stop="54791"/>
              <exon start="55007" stop="55436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55050" stop="55403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG : GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG : GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG : GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG : GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG : GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGGGTATGTGTCATAACACTTCAAACATTTCCATTCCTCCTTGTTATATAACAGGGGAAATTCGTTCTAATCCTCACCTCTATTGCTATCAATCTGCAGTTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG : GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAA</gDNA_template>
            <first_frame> N  T  T  L  I  Y  V  *  S  S  L  D  L  S  Y  S  S  S  F  I  L  S  I  F  T  T  I  S  L  S  I  A  P  M  G  N  V  A  L  F  H  L  I  C  G  I  F  I  F  W  S  V  S  L  V  K  A  E  D  T  Y  K  Y  F  T  W  T  A  T  Y  G  T  L  Y  P  L  G  V  P  Q  Q  :  V  I  L  I  N  G  Q  F  P  G  P  R  L  D  L  V  T  N  D  N  V  I  L  N  L  I  N  K  L  D  E  P  L  L  L  T  W :   N  G  I  K  Q  R  K  N  S  W  Q  D  G  V  L  G  T  N  C  P  I  P  I  N  S  N  Y  T  Y  K  F  Q  T  K  D  Q  I  G  S  Y  T  Y  F  P  S  T  Q  L  H  R  A  V  G  G  F  G  A  L  N  V  Y  A  R  S  V  I  P  V  P  Y  A  K  P  A  G  D  F  S  L  L  I  G  D  W  Y  K  S  S  H  K  :  V  L  R  Q  I  L  D  S  G  R  S  L  P  Y  P  N  D  L  L  I  N  G  Q  K  Q  S  T  F  S  G  D  Q   : G  K  T  Y  M  F  R  I  S  N  V  G  L  K  N  S  I  N  F  R  I  Q  G  H  K  M  R  V  V  E  I  E  G  S  H  V  L  Q  N  F  Y  D  S  L  D  V  H  V  G  Q  S  M  S  V  L  V  T  L  D  Q  P  P  K  D  Y  Y  I  V  A  S  T  R  F  S  R  I  S  F  T  A  T  S  V  L  H  Y  T  N  S  Q  T  P  V  S  G  P  V  P  P  A  P  T  G  Q  M  H  W  S  M  L  Q  A  R  T  F  R :   W  N  L  T  S  N  A  A  R  P  N  P  Q  G  S  F  H  Y  G  K  I  T  I  S  R  T  F  V  M  A  N  S  A  P  L  I  N  G  K  L  R  Y  A  V  N  S  V  S  Y  V  N  P  D  T  P  L  K  L  A  D  H  F  N  I  P  G  V  F  N  L  N  S  I  Q  A  Y  P  S  G  G  S  P  N  L  G  T  A  V  F  P  T  S  H  H  D  F  I  E  I  V  F  Q  N  D  E  A  T  M  Q  S  W  H  L  D  G  Y  D  F  W  V  V  G  Y  V  S  *  H  F  K  H  F  H  S  S  L  L  Y  N  R  G  N  S  F  *  S  S  P  L  L  L  S  I  C  S  F  G  S  G  K  W  T  Q  A  S  R  N  K  Y  N  L  V  D  A  L  T  R  H  T  T  Q  :  V  Y  P  K  S  W  T  A  I  L  V  S  L  D  N  Q  G  M  W  N  L  R  S  A  M  W  D  R  Q  Y  L  G  Q  Q  V  Y  L  R  V  Y  D  P  T  P  S  L  A  N  E  Y  D  I  P  T  N  A  L  L  C  G  K  A  A  G  R  H  T  *  F  D  E  F  Y  T  *  A  F  V  F  Y  W  S  *  E  V  D  *  Q  R  L  R  Q  N  R  T  L  G  R  L  C  C  N  H  I  P  L  Y  F  I  F  L  V  V  G  H  T  S  F  L  K  C  S  *  Y  K  V  H  C  T  *  K  F  L  V  L  N  I  A  N  N  C  D  Q  </first_frame>
            <second_frame>  I  L  L  *  F  M  S  N  P  H  *  I  Y  H  T  V  L  H  S  F  F  L  F  L  Q  L  F  L  *  A  L  L  Q  W  G  M  L  H  F  F  I  *  F  V  E  F  S  F  F  G  V  F  L  W  *  K  Q  R  I  L  I  N  I  S  H  G  L  L  L  M  E  L  F  I  L  L  V  F  L  N  R :   *  S  S  L  M  V  N  F  L  V  Q  D  L  T  L  L  Q  M  T  M  *  F  S  I  *  L  I  S  W  M  N  L  F  C  *  H   : G  M  E  S  N  K  E  R  I  L  G  K  M  E  F  W  E  Q  T  V  P  F  L  *  I  Q  I  T  L  T  S  S  K  Q  K  T  R  L  E  V  T  H  I  S  L  Q  L  N  C  I  E  L  L  E  V  S  E  H  L  T  C  M  R  D  L  *  S  Q  F  H  M  L  N  L  L  E  I  S  V  Y  L  L  V  I  G  T  R  A  V  I  R :   Y  *  G  K  Y  W  T  Q  G  G  L  F  L  T  Q  M  T  S  *  *  M  D  R  S  S  L  P  S  V  V  I  K  :  E  R  H  I  C  S  G  F  Q  M  *  A  *  K  I  P  L  T  S  E  F  R  A  I  R  *  G  L  S  R  L  K  D  P  T  S  C  R  T  S  M  I  L  L  M  S  M  L  V  N  L  C  L  S  L  S  H  *  I  S  L  Q  R  T  T  I  L  L  L  L  Q  G  S  P  G  *  V  L  L  P  L  Q  F  S  T  T  L  T  L  R  H  P  F  L  D  P  C  H  L  L  Q  L  D  K  C  I  G  R  C  C  K  P  E  H  L   : G  G  I  *  H  Q  M  Q  L  G  Q  I  L  R  V  H  S  I  M  E  K  L  Q  Y  Q  G  L  L  L  W  L  I  Q  H  L  L  S  M  E  S  *  D  M  L  S  I  V  C  L  M  L  I  L  I  L  H  L  S  L  L  I  T  S  T  S  P  E  C  S  T  *  T  P  F  K  L  I  P  L  V  V  R  L  T  *  A  Q  L  Y  F  Q  L  L  T  M  I  S  S  K  L  F  S  K  T  M  R  P  P  C  N  P  G  I  L  M  A  M  I  S  G  L  *  G  M  C  H  N  T  S  N  I  S  I  P  P  C  Y  I  T  G  E  I  R  S  N  P  H  L  Y  C  Y  Q  S  A  V  L  D  L  A  N  G  H  K  Q  V  E  I  S  T  I  L  L  M  L  *  L  D  I  L  H  R :   Y  I  P  N  L  G  L  R  Y  W  C  P  W  T  T  K  E  C  G  I  *  D  Q  L  C  G  I  D  N  I  L  D  N  K  C  T  S  E  C  T  T  Q  P  Q  V  *  L  M  N  M  T  Y  Q  L  M  L  F  F  V  A  K  L  L  V  D  I  L  N  L  M  S  F  I  H  R  L  L  F  F  T  G  H  E  R  L  T  S  R  D  C  G  K  T  E  H  L  A  A  Y  V  V  I  T  Y  L  C  I  L  F  F  *  L  L  A  T  L  V  F  *  N  A  A  N  T  K  F  I  V  L  K  N  S  *  F  *  I  *  Q  T  I  V  I  K </second_frame>
            <third_frame>   Y  Y  S  N  L  C  L  I  L  T  R  S  I  I  Q  F  F  I  H  S  F  Y  F  Y  N  Y  F  F  K  H  C  S  N  G  E  C  C  T  F  S  F  D  L  W  N  F  H  F  L  E  C  F  S  G  E  S  R  G  Y  L  *  I  F  H  M  D  C  Y  L  W  N  S  L  S  S  W  C  S  S  T   : G  D  P  H  *  W  S  I  S  W  S  K  T  *  P  C  Y  K  *  Q  C  N  S  Q  S  D  *  *  V  G  *  T  S  S  V  D  M  :  E  W  N  Q  T  K  K  E  F  L  A  R  W  S  F  G  N  K  L  S  H  S  Y  K  F  K  L  H  L  Q  V  P  N  K  R  P  D  W  K  L  H  I  F  P  F  N  S  I  A  *  S  C  W  R  F  R  S  T  *  R  V  C  E  I  C  N  P  S  S  I  C  *  T  C  W  R  F  Q  F  T  Y  W  *  L  V  Q  E  Q  S  *   : G  I  E  A  N  I  G  L  R  E  V  S  S  L  P  K  *  P  P  N  K  W  T  E  A  V  Y  L  Q  W  *  S  R :   K  D  I  Y  V  Q  D  F  K  C  R  L  E  K  F  H  *  L  Q  N  S  G  P  *  D  E  G  C  R  D  *  R  I  P  R  L  A  E  L  L  *  F  S  *  C  P  C  W  S  I  Y  V  C  P  C  H  I  R  S  A  S  K  G  L  L  Y  C  C  F  Y  K  V  L  Q  D  K  F  Y  C  H  F  S  S  P  L  H  *  L  S  D  T  R  F  W  T  R  A  T  C  S  N  W  T  N  A  L  V  D  V  A  S  Q  N  I  *  :  V  E  S  D  I  K  C  S  *  A  K  S  S  G  F  I  P  L  W  K  N  Y  N  I  K  D  F  C  Y  G  *  F  S  T  S  Y  Q  W  K  A  E  I  C  C  Q  *  C  V  L  C  *  S  *  Y  S  T  *  A  C  *  S  L  Q  H  P  R  S  V  Q  L  E  L  H  S  S  L  S  L  W  W  F  A  *  L  R  H  S  C  I  S  N  F  S  P  *  F  H  R  N  C  F  P  K  R  *  G  H  H  A  I  L  A  S  *  W  L  *  F  L  G  C  R  V  C  V  I  T  L  Q  T  F  P  F  L  L  V  I  *  Q  G  K  F  V  L  I  L  T  S  I  A  I  N  L  Q  F  W  I  W  Q  M  D  T  S  K  *  K  *  V  Q  S  C  *  C  S  D  *  T  Y  Y  T   : G  I  S  Q  I  L  D  C  D  I  G  V  L  G  Q  P  R  N  V  E  F  E  I  S  Y  V  G  *  T  I  S  W  T  T  S  V  P  Q  S  V  R  P  N  P  K  S  S  *  *  I  *  H  T  N  *  C  S  S  L  W  Q  S  C  W  *  T  Y  L  I  *  *  V  L  Y  I  G  F  C  F  L  L  V  M  R  G  *  L  A  E  I  A  A  K  Q  N  T  W  P  L  M  L  *  S  H  T  F  V  F  Y  F  F  S  C  W  P  H  *  F  F  E  M  Q  L  I  Q  S  S  L  Y  L  K  I  P  S  S  K  Y  S  K  Q  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52451" stop="52669"/>
                    <exon start="52761" stop="52870"/>
                    <exon start="53188" stop="53458"/>
                    <exon start="53547" stop="53643"/>
                    <exon start="53754" stop="54099"/>
                    <exon start="54251" stop="54629"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1419</number_coding_nucleotides>
                  <number_encoded_amino_acids>473</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLDLSYSSSFILSIFTTISLSIAPMGNVALFHLICGIFIFWSVSLVKAEDTYKYFTWTATYGTLYPLGVPQQVILINGQFPGPRLDLVTNDNVILNLINKLDEPLLLTWNGIKQRKNSWQDGVLGTNCPIPINSNYTYKFQTKDQIGSYTYFPSTQLHRAVGGFGALNVYARSVIPVPYAKPAGDFSLLIGDWYKSSHKVLRQILDSGRSLPYPNDLLINGQKQSTFSGDQGKTYMFRISNVGLKNSINFRIQGHKMRVVEIEGSHVLQNFYDSLDVHVGQSMSVLVTLDQPPKDYYIVASTRFSRISFTATSVLHYTNSQTPVSGPVPPAPTGQMHWSMLQARTFRWNLTSNAARPNPQGSFHYGKITISRTFVMANSAPLINGKLRYAVNSVSYVNPDTPLKLADHFNIPGVFNLNSIQAYPSGGSPNLGTAVFPTSHHDFIEIVFQNDEATMQSWHLDGYDFWVVGYVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54684" stop="54791"/>
                    <exon start="55007" stop="55210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPLLLSICSFGSGKWTQASRNKYNLVDALTRHTTQVYPKSWTAILVSLDNQGMWNLRSAMWDRQYLGQQVYLRVYDPTPSLANEYDIPTNALLCGKAAGRHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52427" e_stop="52669"/>
            <exon e_start="52761" e_stop="52870"/>
            <exon e_start="53188" e_stop="53458"/>
            <exon e_start="53547" e_stop="54099"/>
            <exon e_start="54251" e_stop="54616"/>
            <exon e_start="54713" e_stop="54791"/>
            <exon e_start="55007" e_stop="55442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52669" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52761" e_stop="52870" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.975">
            <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53188" e_stop="53458" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53459" i_stop="53546" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53547" e_stop="54099" e_length="553"/>
          </exon>
          <intron i_serial="4" don_prob="0.812" acc_prob="0.985">
            <gDNA_intron_boundary i_start="54100" i_stop="54250" i_length="151"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54251" e_stop="54616" e_length="366"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.899">
            <gDNA_intron_boundary i_start="54617" i_stop="54712" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54713" e_stop="54791" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="54792" i_stop="55006" i_length="215"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55007" e_stop="55442" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52429" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52433" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52434" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52439" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52440" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52446" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52459" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52472" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52474" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52494" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52531" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52533" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52561" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52779" stop="52870"/>
              <exon start="53188" stop="53458"/>
              <exon start="53547" stop="53569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52850" stop="52870"/>
              <exon start="53188" stop="53438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53557" stop="54072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53557" stop="54063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53557" stop="53925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53557" stop="53911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53854" stop="54099"/>
              <exon start="54251" stop="54260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53869" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54018" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54018" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54021" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54021" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54034" stop="54099"/>
              <exon start="54251" stop="54584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="54099"/>
              <exon start="54251" stop="54616"/>
              <exon start="54713" stop="54790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="54099"/>
              <exon start="54251" stop="54583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54070" stop="54099"/>
              <exon start="54251" stop="54480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54342" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577701" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54419" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54441" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425853" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54515" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54518" stop="54616"/>
              <exon start="54713" stop="54791"/>
              <exon start="55007" stop="55442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54738" stop="54791"/>
              <exon start="55007" stop="55436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55050" stop="55403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG : GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG : GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAG : GTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAGGTCATTCTCAAAATTTATCGAAATAATCTGATCTGGTCTTTAATTTACTGAATTGAAACTAATCCTCAAACAGAATAACTCATTAACACCGCCTATCTTATCATCTTCAGGAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAG : GTGGAATCTGACATCAAATGCAGCTAGGCCAAATCCTCAGGGTTCATTCCATTATGGAAAAATTACAATATCAAGGACTTTTGTTATGGCTAATTCAGCACCTCTTATCAATGGAAAGCTGAGATATGCTGTCAATAGTGTGTCTTATGTTAATCCTGATACTCCACTTAAGCTTGCTGATCACTTCAACATCCCCGGAGTGTTCAACTTGAACTCCATTCAAGCTTATCCCTCTGGTGGTTCGCCTAACTTAGGCACAGCTGTATTTCCAACTTCTCACCATGATTTCATCGAAATTGTTTTCCAAAACGATGAGGCCACCATGCAATCCTGGCATCTTGATGGCTATGATTTCTGGGTTGTAGG : TTTTGGATCTGGCAAATGGACACAAGCAAGTAGAAATAAGTACAATCTTGTTGATGCTCTGACTAGACATACTACACAG : GTATATCCCAAATCTTGGACTGCGATATTGGTGTCCTTGGACAACCAAGGAATGTGGAATTTGAGATCAGCTATGTGGGATAGACAATATCTTGGACAACAAGTGTACCTCAGAGTGTACGACCCAACCCCAAGTCTAGCTAATGAATATGACATACCAACTAATGCTCTTCTTTGTGGCAAAGCTGCTGGTAGACATACTTAATTTGATGAGTTTTATACATAGGCTTTTGTTTTTTACTGGTCATGAGAGGTTGACTAGCAGAGATTGCGGCAAAACAGAACACTTGGCCGCTTATGTTGTAATCACATACCTTTGTATTTTATTTTTTTAGTTGTTGGCCACACTAGTTTTTTGAAATGCAGCTAATACAAAGTTCATTGTACTTAAAAATTCCTAGTTCTAAATATAGCAAACAATTGTGATCAAAATTACT</gDNA_template>
            <first_frame> N  T  T  L  I  Y  V  *  S  S  L  D  L  S  Y  S  S  S  F  I  L  S  I  F  T  T  I  S  L  S  I  A  P  M  G  N  V  A  L  F  H  L  I  C  G  I  F  I  F  W  S  V  S  L  V  K  A  E  D  T  Y  K  Y  F  T  W  T  A  T  Y  G  T  L  Y  P  L  G  V  P  Q  Q  :  V  I  L  I  N  G  Q  F  P  G  P  R  L  D  L  V  T  N  D  N  V  I  L  N  L  I  N  K  L  D  E  P  L  L  L  T  W :   N  G  I  K  Q  R  K  N  S  W  Q  D  G  V  L  G  T  N  C  P  I  P  I  N  S  N  Y  T  Y  K  F  Q  T  K  D  Q  I  G  S  Y  T  Y  F  P  S  T  Q  L  H  R  A  V  G  G  F  G  A  L  N  V  Y  A  R  S  V  I  P  V  P  Y  A  K  P  A  G  D  F  S  L  L  I  G  D  W  Y  K  S  S  H  K  :  V  L  R  Q  I  L  D  S  G  R  S  L  P  Y  P  N  D  L  L  I  N  G  Q  K  Q  S  T  F  S  G  D  Q  G  H  S  Q  N  L  S  K  *  S  D  L  V  F  N  L  L  N  *  N  *  S  S  N  R  I  T  H  *  H  R  L  S  Y  H  L  Q  E  R  H  I  C  S  G  F  Q  M  *  A  *  K  I  P  L  T  S  E  F  R  A  I  R  *  G  L  S  R  L  K  D  P  T  S  C  R  T  S  M  I  L  L  M  S  M  L  V  N  L  C  L  S  L  S  H  *  I  S  L  Q  R  T  T  I  L  L  L  L  Q  G  S  P  G  *  V  L  L  P  L  Q  F  S  T  T  L  T  L  R  H  P  F  L  D  P  C  H  L  L  Q  L  D  K  C  I  G  R  C  C  K  P  E  H  L   : G  G  I  *  H  Q  M  Q  L  G  Q  I  L  R  V  H  S  I  M  E  K  L  Q  Y  Q  G  L  L  L  W  L  I  Q  H  L  L  S  M  E  S  *  D  M  L  S  I  V  C  L  M  L  I  L  I  L  H  L  S  L  L  I  T  S  T  S  P  E  C  S  T  *  T  P  F  K  L  I  P  L  V  V  R  L  T  *  A  Q  L  Y  F  Q  L  L  T  M  I  S  S  K  L  F  S  K  T  M  R  P  P  C  N  P  G  I  L  M  A  M  I  S  G  L  *   : V  L  D  L  A  N  G  H  K  Q  V  E  I  S  T  I  L  L  M  L  *  L  D  I  L  H  R :   Y  I  P  N  L  G  L  R  Y  W  C  P  W  T  T  K  E  C  G  I  *  D  Q  L  C  G  I  D  N  I  L  D  N  K  C  T  S  E  C  T  T  Q  P  Q  V  *  L  M  N  M  T  Y  Q  L  M  L  F  F  V  A  K  L  L  V  D  I  L  N  L  M  S  F  I  H  R  L  L  F  F  T  G  H  E  R  L  T  S  R  D  C  G  K  T  E  H  L  A  A  Y  V  V  I  T  Y  L  C  I  L  F  F  *  L  L  A  T  L  V  F  *  N  A  A  N  T  K  F  I  V  L  K  N  S  *  F  *  I  *  Q  T  I  V  I  K  I  T </first_frame>
            <second_frame>  I  L  L  *  F  M  S  N  P  H  *  I  Y  H  T  V  L  H  S  F  F  L  F  L  Q  L  F  L  *  A  L  L  Q  W  G  M  L  H  F  F  I  *  F  V  E  F  S  F  F  G  V  F  L  W  *  K  Q  R  I  L  I  N  I  S  H  G  L  L  L  M  E  L  F  I  L  L  V  F  L  N  R :   *  S  S  L  M  V  N  F  L  V  Q  D  L  T  L  L  Q  M  T  M  *  F  S  I  *  L  I  S  W  M  N  L  F  C  *  H   : G  M  E  S  N  K  E  R  I  L  G  K  M  E  F  W  E  Q  T  V  P  F  L  *  I  Q  I  T  L  T  S  S  K  Q  K  T  R  L  E  V  T  H  I  S  L  Q  L  N  C  I  E  L  L  E  V  S  E  H  L  T  C  M  R  D  L  *  S  Q  F  H  M  L  N  L  L  E  I  S  V  Y  L  L  V  I  G  T  R  A  V  I  R :   Y  *  G  K  Y  W  T  Q  G  G  L  F  L  T  Q  M  T  S  *  *  M  D  R  S  S  L  P  S  V  V  I  K  V  I  L  K  I  Y  R  N  N  L  I  W  S  L  I  Y  *  I  E  T  N  P  Q  T  E  *  L  I  N  T  A  Y  L  I  I  F  R  K  D  I  Y  V  Q  D  F  K  C  R  L  E  K  F  H  *  L  Q  N  S  G  P  *  D  E  G  C  R  D  *  R  I  P  R  L  A  E  L  L  *  F  S  *  C  P  C  W  S  I  Y  V  C  P  C  H  I  R  S  A  S  K  G  L  L  Y  C  C  F  Y  K  V  L  Q  D  K  F  Y  C  H  F  S  S  P  L  H  *  L  S  D  T  R  F  W  T  R  A  T  C  S  N  W  T  N  A  L  V  D  V  A  S  Q  N  I  *  :  V  E  S  D  I  K  C  S  *  A  K  S  S  G  F  I  P  L  W  K  N  Y  N  I  K  D  F  C  Y  G  *  F  S  T  S  Y  Q  W  K  A  E  I  C  C  Q  *  C  V  L  C  *  S  *  Y  S  T  *  A  C  *  S  L  Q  H  P  R  S  V  Q  L  E  L  H  S  S  L  S  L  W  W  F  A  *  L  R  H  S  C  I  S  N  F  S  P  *  F  H  R  N  C  F  P  K  R  *  G  H  H  A  I  L  A  S  *  W  L  *  F  L  G  C  R  :  F  W  I  W  Q  M  D  T  S  K  *  K  *  V  Q  S  C  *  C  S  D  *  T  Y  Y  T   : G  I  S  Q  I  L  D  C  D  I  G  V  L  G  Q  P  R  N  V  E  F  E  I  S  Y  V  G  *  T  I  S  W  T  T  S  V  P  Q  S  V  R  P  N  P  K  S  S  *  *  I  *  H  T  N  *  C  S  S  L  W  Q  S  C  W  *  T  Y  L  I  *  *  V  L  Y  I  G  F  C  F  L  L  V  M  R  G  *  L  A  E  I  A  A  K  Q  N  T  W  P  L  M  L  *  S  H  T  F  V  F  Y  F  F  S  C  W  P  H  *  F  F  E  M  Q  L  I  Q  S  S  L  Y  L  K  I  P  S  S  K  Y  S  K  Q  L  *  S  K  L   </second_frame>
            <third_frame>   Y  Y  S  N  L  C  L  I  L  T  R  S  I  I  Q  F  F  I  H  S  F  Y  F  Y  N  Y  F  F  K  H  C  S  N  G  E  C  C  T  F  S  F  D  L  W  N  F  H  F  L  E  C  F  S  G  E  S  R  G  Y  L  *  I  F  H  M  D  C  Y  L  W  N  S  L  S  S  W  C  S  S  T   : G  D  P  H  *  W  S  I  S  W  S  K  T  *  P  C  Y  K  *  Q  C  N  S  Q  S  D  *  *  V  G  *  T  S  S  V  D  M  :  E  W  N  Q  T  K  K  E  F  L  A  R  W  S  F  G  N  K  L  S  H  S  Y  K  F  K  L  H  L  Q  V  P  N  K  R  P  D  W  K  L  H  I  F  P  F  N  S  I  A  *  S  C  W  R  F  R  S  T  *  R  V  C  E  I  C  N  P  S  S  I  C  *  T  C  W  R  F  Q  F  T  Y  W  *  L  V  Q  E  Q  S  *   : G  I  E  A  N  I  G  L  R  E  V  S  S  L  P  K  *  P  P  N  K  W  T  E  A  V  Y  L  Q  W  *  S  R  S  F  S  K  F  I  E  I  I  *  S  G  L  *  F  T  E  L  K  L  I  L  K  Q  N  N  S  L  T  P  P  I  L  S  S  S  G  K  T  Y  M  F  R  I  S  N  V  G  L  K  N  S  I  N  F  R  I  Q  G  H  K  M  R  V  V  E  I  E  G  S  H  V  L  Q  N  F  Y  D  S  L  D  V  H  V  G  Q  S  M  S  V  L  V  T  L  D  Q  P  P  K  D  Y  Y  I  V  A  S  T  R  F  S  R  I  S  F  T  A  T  S  V  L  H  Y  T  N  S  Q  T  P  V  S  G  P  V  P  P  A  P  T  G  Q  M  H  W  S  M  L  Q  A  R  T  F  R :   W  N  L  T  S  N  A  A  R  P  N  P  Q  G  S  F  H  Y  G  K  I  T  I  S  R  T  F  V  M  A  N  S  A  P  L  I  N  G  K  L  R  Y  A  V  N  S  V  S  Y  V  N  P  D  T  P  L  K  L  A  D  H  F  N  I  P  G  V  F  N  L  N  S  I  Q  A  Y  P  S  G  G  S  P  N  L  G  T  A  V  F  P  T  S  H  H  D  F  I  E  I  V  F  Q  N  D  E  A  T  M  Q  S  W  H  L  D  G  Y  D  F  W  V  V  G :   F  G  S  G  K  W  T  Q  A  S  R  N  K  Y  N  L  V  D  A  L  T  R  H  T  T  Q  :  V  Y  P  K  S  W  T  A  I  L  V  S  L  D  N  Q  G  M  W  N  L  R  S  A  M  W  D  R  Q  Y  L  G  Q  Q  V  Y  L  R  V  Y  D  P  T  P  S  L  A  N  E  Y  D  I  P  T  N  A  L  L  C  G  K  A  A  G  R  H  T  *  F  D  E  F  Y  T  *  A  F  V  F  Y  W  S  *  E  V  D  *  Q  R  L  R  Q  N  R  T  L  G  R  L  C  C  N  H  I  P  L  Y  F  I  F  L  V  V  G  H  T  S  F  L  K  C  S  *  Y  K  V  H  C  T  *  K  F  L  V  L  N  I  A  N  N  C  D  Q  N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53687" stop="54099"/>
                    <exon start="54251" stop="54616"/>
                    <exon start="54713" stop="54791"/>
                    <exon start="55007" stop="55210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTELKLILKQNNSLTPPILSSSGKTYMFRISNVGLKNSINFRIQGHKMRVVEIEGSHVLQNFYDSLDVHVGQSMSVLVTLDQPPKDYYIVASTRFSRISFTATSVLHYTNSQTPVSGPVPPAPTGQMHWSMLQARTFRWNLTSNAARPNPQGSFHYGKITISRTFVMANSAPLINGKLRYAVNSVSYVNPDTPLKLADHFNIPGVFNLNSIQAYPSGGSPNLGTAVFPTSHHDFIEIVFQNDEATMQSWHLDGYDFWVVGFGSGKWTQASRNKYNLVDALTRHTTQVYPKSWTAILVSLDNQGMWNLRSAMWDRQYLGQQVYLRVYDPTPSLANEYDIPTNALLCGKAAGRHT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52451" stop="52669"/>
                    <exon start="52761" stop="52870"/>
                    <exon start="53188" stop="53458"/>
                    <exon start="53547" stop="53669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLDLSYSSSFILSIFTTISLSIAPMGNVALFHLICGIFIFWSVSLVKAEDTYKYFTWTATYGTLYPLGVPQQVILINGQFPGPRLDLVTNDNVILNLINKLDEPLLLTWNGIKQRKNSWQDGVLGTNCPIPINSNYTYKFQTKDQIGSYTYFPSTQLHRAVGGFGALNVYARSVIPVPYAKPAGDFSLLIGDWYKSSHKVLRQILDSGRSLPYPNDLLINGQKQSTFSGDQGHSQNLSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52427" e_stop="52669"/>
            <exon e_start="52761" e_stop="52870"/>
            <exon e_start="53188" e_stop="53643"/>
            <exon e_start="53754" e_stop="54133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.303" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52669" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="52670" i_stop="52760" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52761" e_stop="52870" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.975">
            <gDNA_intron_boundary i_start="52871" i_stop="53187" i_length="317"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="53188" e_stop="53643" e_length="456"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.303">
            <gDNA_intron_boundary i_start="53644" i_stop="53753" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53754" e_stop="54133" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52427" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52429" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52433" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52434" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52437" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52439" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52669"/>
              <exon start="52761" stop="52833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52442" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52446" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52447" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52472" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52474" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52494" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52531" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52533" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52561" stop="52669"/>
              <exon start="52761" stop="52870"/>
              <exon start="53188" stop="53235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52850" stop="52870"/>
              <exon start="53188" stop="53438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53320" stop="53643"/>
              <exon start="53754" stop="54133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53595" stop="53643"/>
              <exon start="53754" stop="53949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACTACTCTAATTTATGTCTAATCCTCACTAGATCTATCATACAGTTCTTCATTCATTCTTTCTATTTTTACAACTATTTCTTTAAGCATTGCTCCAATGGGGAATGTTGCACTTTTTCATTTGATTTGTGGAATTTTCATTTTTTGGAGTGTTTCTCTGGTGAAAGCAGAGGATACTTATAAATATTTCACATGGACTGCTACTTATGGAACTCTTTATCCTCTTGGTGTTCCTCAACAG : GTGATCCTCATTAATGGTCAATTTCCTGGTCCAAGACTTGACCTTGTTACAAATGACAATGTAATTCTCAATCTGATTAATAAGTTGGATGAACCTCTTCTGTTGACATG : GAATGGAATCAAACAAAGAAAGAATTCTTGGCAAGATGGAGTTTTGGGAACAAACTGTCCCATTCCTATAAATTCAAATTACACTTACAAGTTCCAAACAAAAGACCAGATTGGAAGTTACACATATTTCCCTTCAACTCAATTGCATAGAGCTGTTGGAGGTTTCGGAGCACTTAACGTGTATGCGAGATCTGTAATCCCAGTTCCATATGCTAAACCTGCTGGAGATTTCAGTTTACTTATTGGTGATTGGTACAAGAGCAGTCATAAGGTGAGCCTCTTGCCTGACTGTTATAGAAAAGTCTGACTGTAGAAGAGTTCATTGTTCAATTTTGTTGATGTTCTTGGTGTACTTGCAGGTATTGAGGCAAATATTGGACTCAGGGAGGTCTCTTCCTTACCCAAATGACCTCCTAATAAATGGACAGAAGCAGTCTACCTTCAGTGGTGATCAAG : GAAAGACATATATGTTCAGGATTTCAAATGTAGGCTTGAAAAATTCCATTAACTTCAGAATTCAGGGCCATAAGATGAGGGTTGTCGAGATTGAAGGATCCCACGTCTTGCAGAACTTCTATGATTCTCTTGATGTCCATGTTGGTCAATCTATGTCTGTCCTTGTCACATTAGATCAGCCTCCAAAGGACTACTATATTGTTGCTTCTACAAGGTTCTCCAGGATAAGTTTTACTGCCACTTCAGTTCTCCACTACACTAACTCTCAGACACCCGTTTCTGGACCCGTGCCACCTGCTCCAACTGGACAAATGCATTGGTCGATGTTGCAAGCCAGAACATTTAGGTACCTTTTATCCACAAGAAGTCTCAGTGGATTC</gDNA_template>
            <first_frame> N  T  T  L  I  Y  V  *  S  S  L  D  L  S  Y  S  S  S  F  I  L  S  I  F  T  T  I  S  L  S  I  A  P  M  G  N  V  A  L  F  H  L  I  C  G  I  F  I  F  W  S  V  S  L  V  K  A  E  D  T  Y  K  Y  F  T  W  T  A  T  Y  G  T  L  Y  P  L  G  V  P  Q  Q  :  V  I  L  I  N  G  Q  F  P  G  P  R  L  D  L  V  T  N  D  N  V  I  L  N  L  I  N  K  L  D  E  P  L  L  L  T  W :   N  G  I  K  Q  R  K  N  S  W  Q  D  G  V  L  G  T  N  C  P  I  P  I  N  S  N  Y  T  Y  K  F  Q  T  K  D  Q  I  G  S  Y  T  Y  F  P  S  T  Q  L  H  R  A  V  G  G  F  G  A  L  N  V  Y  A  R  S  V  I  P  V  P  Y  A  K  P  A  G  D  F  S  L  L  I  G  D  W  Y  K  S  S  H  K  V  S  L  L  P  D  C  Y  R  K  V  *  L  *  K  S  S  L  F  N  F  V  D  V  L  G  V  L  A  G  I  E  A  N  I  G  L  R  E  V  S  S  L  P  K  *  P  P  N  K  W  T  E  A  V  Y  L  Q  W  *  S  R :   K  D  I  Y  V  Q  D  F  K  C  R  L  E  K  F  H  *  L  Q  N  S  G  P  *  D  E  G  C  R  D  *  R  I  P  R  L  A  E  L  L  *  F  S  *  C  P  C  W  S  I  Y  V  C  P  C  H  I  R  S  A  S  K  G  L  L  Y  C  C  F  Y  K  V  L  Q  D  K  F  Y  C  H  F  S  S  P  L  H  *  L  S  D  T  R  F  W  T  R  A  T  C  S  N  W  T  N  A  L  V  D  V  A  S  Q  N  I  *  V  P  F  I  H  K  K  S  Q  W  I  </first_frame>
            <second_frame>  I  L  L  *  F  M  S  N  P  H  *  I  Y  H  T  V  L  H  S  F  F  L  F  L  Q  L  F  L  *  A  L  L  Q  W  G  M  L  H  F  F  I  *  F  V  E  F  S  F  F  G  V  F  L  W  *  K  Q  R  I  L  I  N  I  S  H  G  L  L  L  M  E  L  F  I  L  L  V  F  L  N  R :   *  S  S  L  M  V  N  F  L  V  Q  D  L  T  L  L  Q  M  T  M  *  F  S  I  *  L  I  S  W  M  N  L  F  C  *  H   : G  M  E  S  N  K  E  R  I  L  G  K  M  E  F  W  E  Q  T  V  P  F  L  *  I  Q  I  T  L  T  S  S  K  Q  K  T  R  L  E  V  T  H  I  S  L  Q  L  N  C  I  E  L  L  E  V  S  E  H  L  T  C  M  R  D  L  *  S  Q  F  H  M  L  N  L  L  E  I  S  V  Y  L  L  V  I  G  T  R  A  V  I  R  *  A  S  C  L  T  V  I  E  K  S  D  C  R  R  V  H  C  S  I  L  L  M  F  L  V  Y  L  Q  V  L  R  Q  I  L  D  S  G  R  S  L  P  Y  P  N  D  L  L  I  N  G  Q  K  Q  S  T  F  S  G  D  Q   : G  K  T  Y  M  F  R  I  S  N  V  G  L  K  N  S  I  N  F  R  I  Q  G  H  K  M  R  V  V  E  I  E  G  S  H  V  L  Q  N  F  Y  D  S  L  D  V  H  V  G  Q  S  M  S  V  L  V  T  L  D  Q  P  P  K  D  Y  Y  I  V  A  S  T  R  F  S  R  I  S  F  T  A  T  S  V  L  H  Y  T  N  S  Q  T  P  V  S  G  P  V  P  P  A  P  T  G  Q  M  H  W  S  M  L  Q  A  R  T  F  R  Y  L  L  S  T  R  S  L  S  G  F </second_frame>
            <third_frame>   Y  Y  S  N  L  C  L  I  L  T  R  S  I  I  Q  F  F  I  H  S  F  Y  F  Y  N  Y  F  F  K  H  C  S  N  G  E  C  C  T  F  S  F  D  L  W  N  F  H  F  L  E  C  F  S  G  E  S  R  G  Y  L  *  I  F  H  M  D  C  Y  L  W  N  S  L  S  S  W  C  S  S  T   : G  D  P  H  *  W  S  I  S  W  S  K  T  *  P  C  Y  K  *  Q  C  N  S  Q  S  D  *  *  V  G  *  T  S  S  V  D  M  :  E  W  N  Q  T  K  K  E  F  L  A  R  W  S  F  G  N  K  L  S  H  S  Y  K  F  K  L  H  L  Q  V  P  N  K  R  P  D  W  K  L  H  I  F  P  F  N  S  I  A  *  S  C  W  R  F  R  S  T  *  R  V  C  E  I  C  N  P  S  S  I  C  *  T  C  W  R  F  Q  F  T  Y  W  *  L  V  Q  E  Q  S  *  G  E  P  L  A  *  L  L  *  K  S  L  T  V  E  E  F  I  V  Q  F  C  *  C  S  W  C  T  C  R  Y  *  G  K  Y  W  T  Q  G  G  L  F  L  T  Q  M  T  S  *  *  M  D  R  S  S  L  P  S  V  V  I  K  :  E  R  H  I  C  S  G  F  Q  M  *  A  *  K  I  P  L  T  S  E  F  R  A  I  R  *  G  L  S  R  L  K  D  P  T  S  C  R  T  S  M  I  L  L  M  S  M  L  V  N  L  C  L  S  L  S  H  *  I  S  L  Q  R  T  T  I  L  L  L  L  Q  G  S  P  G  *  V  L  L  P  L  Q  F  S  T  T  L  T  L  R  H  P  F  L  D  P  C  H  L  L  Q  L  D  K  C  I  G  R  C  C  K  P  E  H  L  G  T  F  Y  P  Q  E  V  S  V  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52451" stop="52669"/>
                    <exon start="52761" stop="52870"/>
                    <exon start="53188" stop="53494"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLDLSYSSSFILSIFTTISLSIAPMGNVALFHLICGIFIFWSVSLVKAEDTYKYFTWTATYGTLYPLGVPQQVILINGQFPGPRLDLVTNDNVILNLINKLDEPLLLTWNGIKQRKNSWQDGVLGTNCPIPINSNYTYKFQTKDQIGSYTYFPSTQLHRAVGGFGALNVYARSVIPVPYAKPAGDFSLLIGDWYKSSHKVSLLPDCYRKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53463" stop="53643"/>
                    <exon start="53754" stop="54133"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASCLTVIEKSDCRRVHCSILLMFLVYLQVLRQILDSGRSLPYPNDLLINGQKQSTFSGDQGKTYMFRISNVGLKNSINFRIQGHKMRVVEIEGSHVLQNFYDSLDVHVGQSMSVLVTLDQPPKDYYIVASTRFSRISFTATSVLHYTNSQTPVSGPVPPAPTGQMHWSMLQARTFRYLLSTRSLSGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58926" PGL_stop="59741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58926" e_stop="59406"/>
            <exon e_start="59516" e_stop="59741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.502" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58926" e_stop="59406" e_length="481"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.502">
            <gDNA_intron_boundary i_start="59407" i_stop="59515" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="59516" e_stop="59741" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58926" stop="59402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58983" stop="59406"/>
              <exon start="59516" stop="59638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59166" stop="59406"/>
              <exon start="59516" stop="59741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACTCATTTATTTTAACGTCAATTAATATGGATTATTATTGCATTCCTCTAGCTCTCTTGTTTGCCTGGACTTTGTTCCAAGGCTTGAATTTGTTAGTAGCGTTAACATCAAATAGAAGCAAAAAGTTACCTCCAGGACCCTTTCCATTATCCATAATAGGAAATCTTCACTTACTGGGAATTCAACCCCATCGATCCCTTGCCAAACTGGCCGATTCTCATGGCCCAATTATGCACCTGAAGTTGGGCCAAATAACAACTGTGGTGATTTCTTCTTCAGACATGGCTAAACAAATGCTCCAAAAGCAAGACTTAGCCTTCTCTAGCAGATCAATTCCTGATACTGTCCAAGTAGACAACTTTCACATGTTCTCCGTTGTTTGGCTTCCCGCTTCAGGGCCTCAATGGAGAACTCTCCGCAAAATATTGAATTCCCACATCTTCTCCGTTAACAAGCTTGATGCCACCCAGCATCTTAG : GTACAAGAAGATGGAAGAACTTGTTGTTTACTGTAAAAGGAGTAGCCAGATGGGGGAGGCAGTAGATATTGGTGGTGCAATTTTTAGGACCATGTTGAATTTACTTTCCAACACTCTAATCTCAAAGGACTTGGCAGATCCGTATGAAAATTCGGGTAAAGAATTTAAGGATTTGGTGGAGGGACTAATGATAGACATGGGTAAACCAAATTGGGTGGACTACTTT</gDNA_template>
            <first_frame> *  T  H  L  F  *  R  Q  L  I  W  I  I  I  A  F  L  *  L  S  C  L  P  G  L  C  S  K  A  *  I  C  *  *  R  *  H  Q  I  E  A  K  S  Y  L  Q  D  P  F  H  Y  P  *  *  E  I  F  T  Y  W  E  F  N  P  I  D  P  L  P  N  W  P  I  L  M  A  Q  L  C  T  *  S  W  A  K  *  Q  L  W  *  F  L  L  Q  T  W  L  N  K  C  S  K  S  K  T  *  P  S  L  A  D  Q  F  L  I  L  S  K  *  T  T  F  T  C  S  P  L  F  G  F  P  L  Q  G  L  N  G  E  L  S  A  K  Y  *  I  P  T  S  S  P  L  T  S  L  M  P  P  S  I  L   : G  T  R  R  W  K  N  L  L  F  T  V  K  G  V  A  R  W  G  R  Q  *  I  L  V  V  Q  F  L  G  P  C  *  I  Y  F  P  T  L  *  S  Q  R  T  W  Q  I  R  M  K  I  R  V  K  N  L  R  I  W  W  R  D  *  *  *  T  W  V  N  Q  I  G  W  T  T   </first_frame>
            <second_frame>  K  L  I  Y  F  N  V  N  *  Y  G  L  L  L  H  S  S  S  S  L  V  C  L  D  F  V  P  R  L  E  F  V  S  S  V  N  I  K  *  K  Q  K  V  T  S  R  T  L  S  I  I  H  N  R  K  S  S  L  T  G  N  S  T  P  S  I  P  C  Q  T  G  R  F  S  W  P  N  Y  A  P  E  V  G  P  N  N  N  C  G  D  F  F  F  R  H  G  *  T  N  A  P  K  A  R  L  S  L  L  *  Q  I  N  S  *  Y  C  P  S  R  Q  L  S  H  V  L  R  C  L  A  S  R  F  R  A  S  M  E  N  S  P  Q  N  I  E  F  P  H  L  L  R  *  Q  A  *  C  H  P  A  S  *  :  V  Q  E  D  G  R  T  C  C  L  L  *  K  E  *  P  D  G  G  G  S  R  Y  W  W  C  N  F  *  D  H  V  E  F  T  F  Q  H  S  N  L  K  G  L  G  R  S  V  *  K  F  G  *  R  I  *  G  F  G  G  G  T  N  D  R  H  G  *  T  K  L  G  G  L  L  </second_frame>
            <third_frame>   N  S  F  I  L  T  S  I  N  M  D  Y  Y  C  I  P  L  A  L  L  F  A  W  T  L  F  Q  G  L  N  L  L  V  A  L  T  S  N  R  S  K  K  L  P  P  G  P  F  P  L  S  I  I  G  N  L  H  L  L  G  I  Q  P  H  R  S  L  A  K  L  A  D  S  H  G  P  I  M  H  L  K  L  G  Q  I  T  T  V  V  I  S  S  S  D  M  A  K  Q  M  L  Q  K  Q  D  L  A  F  S  S  R  S  I  P  D  T  V  Q  V  D  N  F  H  M  F  S  V  V  W  L  P  A  S  G  P  Q  W  R  T  L  R  K  I  L  N  S  H  I  F  S  V  N  K  L  D  A  T  Q  H  L  R :   Y  K  K  M  E  E  L  V  V  Y  C  K  R  S  S  Q  M  G  E  A  V  D  I  G  G  A  I  F  R  T  M  L  N  L  L  S  N  T  L  I  S  K  D  L  A  D  P  Y  E  N  S  G  K  E  F  K  D  L  V  E  G  L  M  I  D  M  G  K  P  N  W  V  D  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58928" stop="59406"/>
                    <exon start="59516" stop="59741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFILTSINMDYYCIPLALLFAWTLFQGLNLLVALTSNRSKKLPPGPFPLSIIGNLHLLGIQPHRSLAKLADSHGPIMHLKLGQITTVVISSSDMAKQMLQKQDLAFSSRSIPDTVQVDNFHMFSVVWLPASGPQWRTLRKILNSHIFSVNKLDATQHLRYKKMEELVVYCKRSSQMGEAVDIGGAIFRTMLNLLSNTLISKDLADPYENSGKEFKDLVEGLMIDMGKPNWVDYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="59851" PGL_stop="60888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59906" e_stop="59954"/>
            <exon e_start="60230" e_stop="60888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59906" e_stop="59954" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.967">
            <gDNA_intron_boundary i_start="59955" i_stop="60229" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60230" e_stop="60888" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59906" stop="59954"/>
              <exon start="60230" stop="60888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59906" stop="59954"/>
              <exon start="60230" stop="60779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59906" stop="59954"/>
              <exon start="60230" stop="60734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59906" stop="59954"/>
              <exon start="60230" stop="60610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60318" stop="60888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60562" stop="60882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTG : GACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCACAAATTTAT</gDNA_template>
            <first_frame> R  *  S  T  R  Y  *  S  Q  A  Y  S  Y  N  T  F   : G  P  I  *  C  G  N  *  H  K  F  E  C  S  G  M  G  Y  D  *  A  S  *  I  S  R  Y  Y  E  E  S  P  S  *  A  R  T  S  P  R  R  R  *  P  D  G  R  N  *  R  C  P  T  P  L  L  A  V  H  Y  *  R  N  L  Q  D  A  P  S  S  S  F  F  G  T  S  K  S  R  A  R  C  *  A  V  W  L  H  C  P  *  R  F  E  S  A  H  *  C  V  G  N  W  P  G  L  D  S  M  G  R  P  F  G  V  *  S  *  *  I  *  G  F  K  I  G  C  A  R  S  R  F  *  V  N  S  I  W  C  W  S  K  N  L  S  W  S  A  I  G  N  K  D  G  P  S  T  A  R  H  N  V  E  Y  I  *  V  E  N  *  G  *  Y  C  T  K  *  H  G  H  A  G  E  I  W  P  H  L  G  Q  T  S  S  S  P  S  C  P  P  S  P  L  I  S  K  K  N  E  *  I  N  N  N  L  I  *  A  Q  I  Y </first_frame>
            <second_frame>  D  N  P  Q  D  I  D  R  K  H  I  A  T  I  L  L  :  D  L  F  N  A  G  T  D  T  S  S  N  V  V  E  W  A  M  T  E  L  L  R  S  P  D  I  M  K  K  V  Q  A  E  L  V  Q  V  L  G  E  G  N  L  M  E  E  T  D  V  A  R  L  P  Y  L  Q  C  I  I  K  E  T  Y  R  M  H  P  P  A  P  F  L  V  P  R  K  V  E  Q  D  V  E  L  C  G  Y  T  V  P  K  G  S  K  V  L  I  N  V  W  A  I  G  R  D  S  T  L  W  E  D  P  L  V  F  N  P  D  R  F  K  D  S  K  L  D  V  R  G  Q  D  F  E  L  I  P  F  G  A  G  R  R  I  C  P  G  L  P  L  A  I  R  M  V  P  V  L  L  G  T  M  L  N  T  F  K  W  K  I  E  G  D  I  A  P  N  D  M  D  M  Q  E  K  F  G  L  T  L  A  K  L  R  P  L  R  A  V  P  L  P  L  *  Y  P  K  K  M  N  K  *  I  I  I  *  Y  K  H  K  F   </second_frame>
            <third_frame>   I  I  H  K  I  L  I  A  S  I  *  L  Q  Y  F  W :   T  Y  L  M  R  E  L  T  Q  V  R  M  *  W  N  G  L  *  L  S  F  L  D  L  Q  I  L  *  R  K  S  K  L  S  S  Y  K  S  S  E  K  V  T  *  W  K  K  L  T  L  P  D  S  L  T  C  S  A  L  L  K  K  L  T  G  C  T  L  Q  L  L  F  W  Y  L  E  K  *  S  K  M  L  S  C  V  A  T  L  S  L  K  V  R  K  C  S  L  M  C  G  Q  L  A  G  T  R  L  Y  G  K  T  L  W  C  L  I  L  I  D  L  R  I  Q  N  W  M  C  E  V  K  I  L  S  *  F  H  L  V  L  V  E  E  F  V  L  V  C  H  W  Q  *  G  W  S  Q  Y  C  *  A  Q  C  *  I  H  L  S  G  K  L  R  V  I  L  H  Q  M  T  W  T  C  R  R  N  L  A  S  P  W  P  N  F  V  L  S  E  L  S  P  F  P  F  N  I  Q  K  K  *  I  N  K  *  *  F  N  I  S  T  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59907" stop="59954"/>
                    <exon start="60230" stop="60835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNPQDIDRKHIATILLDLFNAGTDTSSNVVEWAMTELLRSPDIMKKVQAELVQVLGEGNLMEETDVARLPYLQCIIKETYRMHPPAPFLVPRKVEQDVELCGYTVPKGSKVLINVWAIGRDSTLWEDPLVFNPDRFKDSKLDVRGQDFELIPFGAGRRICPGLPLAIRMVPVLLGTMLNTFKWKIEGDIAPNDMDMQEKFGLTLAKLRPLRAVPLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59851" e_stop="60888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="59851" e_stop="60888" e_length="1038"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59851" stop="60249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59871" stop="60457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60318" stop="60888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60562" stop="60882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGAATGGACAAAAGAGTAGTGATGTTTTAGACACCTTACTCACAGCGACTGAAGATAATCCACAAGATATTGATCGCAAGCATATAGCTACAATACTTTTGGTGAGCACTCACTACTTTGAGAATATTACTCTCATGATATCAAAGTCAAGTCCATTTTTGTCACCATGTTTGATACATTAATTGGACATGCATATAGTATTTTTCAAATTATGAAAAATTAAAAATCTTTAGTTTATTTTCAGTAGTGGTCCTTGTTTTTACAAACCGAATTGACTTGTTCAGTGTGCCCCTCTCTTTGAATTATCAACCCTAAGTGGTTTCAGGGAGTAATTTTCGGCTCAAAGTTACGTTGTGGGTGTGTATCTTAATCTCAGGACCTATTTAATGCGGGAACTGACACAAGTTCGAATGTAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAGAAAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAGTGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAAAAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGGTTCGAAAGTGCTCATTAATGTGTGGGCAATTGGCCGGGACTCGACTCTATGGGAAGACCCTTTGGTGTTTAATCCTGATAGATTTAAGGATTCAAAATTGGATGTGCGAGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTACTGCTAGGCACAATGTTGAATACATTTAAGTGGAAAATTGAGGGTGATATTGCACCAAATGACATGGACATGCAGGAGAAATTTGGCCTCACCTTGGCCAAACTTCGTCCTCTCCGAGCTGTCCCCCTTCCCCTTTAATATCCAAAAAAAATGAATAAATAAATAATAATTTAATATAAGCACAAATTTAT</gDNA_template>
            <first_frame> R  *  M  D  K  R  V  V  M  F  *  T  P  Y  S  Q  R  L  K  I  I  H  K  I  L  I  A  S  I  *  L  Q  Y  F  W  *  A  L  T  T  L  R  I  L  L  S  *  Y  Q  S  Q  V  H  F  C  H  H  V  *  Y  I  N  W  T  C  I  *  Y  F  S  N  Y  E  K  L  K  I  F  S  L  F  S  V  V  V  L  V  F  T  N  R  I  D  L  F  S  V  P  L  S  L  N  Y  Q  P  *  V  V  S  G  S  N  F  R  L  K  V  T  L  W  V  C  I  L  I  S  G  P  I  *  C  G  N  *  H  K  F  E  C  S  G  M  G  Y  D  *  A  S  *  I  S  R  Y  Y  E  E  S  P  S  *  A  R  T  S  P  R  R  R  *  P  D  G  R  N  *  R  C  P  T  P  L  L  A  V  H  Y  *  R  N  L  Q  D  A  P  S  S  S  F  F  G  T  S  K  S  R  A  R  C  *  A  V  W  L  H  C  P  *  R  F  E  S  A  H  *  C  V  G  N  W  P  G  L  D  S  M  G  R  P  F  G  V  *  S  *  *  I  *  G  F  K  I  G  C  A  R  S  R  F  *  V  N  S  I  W  C  W  S  K  N  L  S  W  S  A  I  G  N  K  D  G  P  S  T  A  R  H  N  V  E  Y  I  *  V  E  N  *  G  *  Y  C  T  K  *  H  G  H  A  G  E  I  W  P  H  L  G  Q  T  S  S  S  P  S  C  P  P  S  P  L  I  S  K  K  N  E  *  I  N  N  N  L  I  *  A  Q  I  Y </first_frame>
            <second_frame>  D  E  W  T  K  E  *  *  C  F  R  H  L  T  H  S  D  *  R  *  S  T  R  Y  *  S  Q  A  Y  S  Y  N  T  F  G  E  H  S  L  L  *  E  Y  Y  S  H  D  I  K  V  K  S  I  F  V  T  M  F  D  T  L  I  G  H  A  Y  S  I  F  Q  I  M  K  N  *  K  S  L  V  Y  F  Q  *  W  S  L  F  L  Q  T  E  L  T  C  S  V  C  P  S  L  *  I  I  N  P  K  W  F  Q  G  V  I  F  G  S  K  L  R  C  G  C  V  S  *  S  Q  D  L  F  N  A  G  T  D  T  S  S  N  V  V  E  W  A  M  T  E  L  L  R  S  P  D  I  M  K  K  V  Q  A  E  L  V  Q  V  L  G  E  G  N  L  M  E  E  T  D  V  A  R  L  P  Y  L  Q  C  I  I  K  E  T  Y  R  M  H  P  P  A  P  F  L  V  P  R  K  V  E  Q  D  V  E  L  C  G  Y  T  V  P  K  G  S  K  V  L  I  N  V  W  A  I  G  R  D  S  T  L  W  E  D  P  L  V  F  N  P  D  R  F  K  D  S  K  L  D  V  R  G  Q  D  F  E  L  I  P  F  G  A  G  R  R  I  C  P  G  L  P  L  A  I  R  M  V  P  V  L  L  G  T  M  L  N  T  F  K  W  K  I  E  G  D  I  A  P  N  D  M  D  M  Q  E  K  F  G  L  T  L  A  K  L  R  P  L  R  A  V  P  L  P  L  *  Y  P  K  K  M  N  K  *  I  I  I  *  Y  K  H  K  F   </second_frame>
            <third_frame>   M  N  G  Q  K  S  S  D  V  L  D  T  L  L  T  A  T  E  D  N  P  Q  D  I  D  R  K  H  I  A  T  I  L  L  V  S  T  H  Y  F  E  N  I  T  L  M  I  S  K  S  S  P  F  L  S  P  C  L  I  H  *  L  D  M  H  I  V  F  F  K  L  *  K  I  K  N  L  *  F  I  F  S  S  G  P  C  F  Y  K  P  N  *  L  V  Q  C  A  P  L  F  E  L  S  T  L  S  G  F  R  E  *  F  S  A  Q  S  Y  V  V  G  V  Y  L  N  L  R  T  Y  L  M  R  E  L  T  Q  V  R  M  *  W  N  G  L  *  L  S  F  L  D  L  Q  I  L  *  R  K  S  K  L  S  S  Y  K  S  S  E  K  V  T  *  W  K  K  L  T  L  P  D  S  L  T  C  S  A  L  L  K  K  L  T  G  C  T  L  Q  L  L  F  W  Y  L  E  K  *  S  K  M  L  S  C  V  A  T  L  S  L  K  V  R  K  C  S  L  M  C  G  Q  L  A  G  T  R  L  Y  G  K  T  L  W  C  L  I  L  I  D  L  R  I  Q  N  W  M  C  E  V  K  I  L  S  *  F  H  L  V  L  V  E  E  F  V  L  V  C  H  W  Q  *  G  W  S  Q  Y  C  *  A  Q  C  *  I  H  L  S  G  K  L  R  V  I  L  H  Q  M  T  W  T  C  R  R  N  L  A  S  P  W  P  N  F  V  L  S  E  L  S  P  F  P  F  N  I  Q  K  K  *  I  N  K  *  *  F  N  I  S  T  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60224" stop="60835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQDLFNAGTDTSSNVVEWAMTELLRSPDIMKKVQAELVQVLGEGNLMEETDVARLPYLQCIIKETYRMHPPAPFLVPRKVEQDVELCGYTVPKGSKVLINVWAIGRDSTLWEDPLVFNPDRFKDSKLDVRGQDFELIPFGAGRRICPGLPLAIRMVPVLLGTMLNTFKWKIEGDIAPNDMDMQEKFGLTLAKLRPLRAVPLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68184" PGL_stop="70392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69519" e_stop="70392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="69519" e_stop="70392" e_length="874"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69519" stop="69995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69528" stop="70008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69640" stop="70304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69640" stop="70238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69641" stop="70329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69659" stop="70392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGTGCATCTTAATCTCAGGACCTATTTGATGCCGGAACTGATACAAGTTCGAACATAGTGGAATGGGCTATGACTGAGCTTCTTAGATCTCCAGATATTATGAAAAGAGTCCAAGCTGAGCTCGTACAAGTCCTCGGAGAAGGTAACCTGATGGAAGAAACTGACGTTGCCCGACTCCCTTACTTGCAATGCATTATTAAAGAAACTTACAGGATGCACCCTCCAGCTCCTTTTTTGGTACCTCGAGGAGTAGAGCAAGATGTTGAGCTGTGTGGCTACACTGTCCCTAAAGATTCAAAAGTGTTGATTAATGTGTGGGCAATTGGCCGGGACTCAACTTTTTGGAAAGACCCTTTGGTGTTTAATCCTGATAGATTTATGGATTCAAAATTGGATGTGCGAGGTCAAAATTTTGAGTTAATTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGTCTGCCATTGGCAATAAGGATGGTCCCAGTAATGCTAGGCTCACTGTTGAATACATTTAAGTGGAAAATTGAGGGCGACATTGCACCAAATGACTTGGACATGCAGGAGAAATTTGGCCTCACCTTAACCAGACTTCATCCTCTTAGAGCTGTTCCACTTCCACTCTGAAATTCAAAATCAGATGCTTCCTAGAAAAAGCAATGGATAATAAACACCGTAACTAATAATTATATTTCCAATAAAAGTATAAGCACAAATTATGTTATTTTATAGGGAAGGAAATCAGAGCGTATCTAGAGGCCATGCTCCTCTCCCTAGATCATATATAGAATTATTATATTTTTTTTTAAAAAAAATAAATAAATATATATGAATCCATATTTAAAGTATCATATAATAATACAATGATGATTGGGT</gDNA_template>
            <first_frame> G  C  I  L  I  S  G  P  I  *  C  R  N  *  Y  K  F  E  H  S  G  M  G  Y  D  *  A  S  *  I  S  R  Y  Y  E  K  S  P  S  *  A  R  T  S  P  R  R  R  *  P  D  G  R  N  *  R  C  P  T  P  L  L  A  M  H  Y  *  R  N  L  Q  D  A  P  S  S  S  F  F  G  T  S  R  S  R  A  R  C  *  A  V  W  L  H  C  P  *  R  F  K  S  V  D  *  C  V  G  N  W  P  G  L  N  F  L  E  R  P  F  G  V  *  S  *  *  I  Y  G  F  K  I  G  C  A  R  S  K  F  *  V  N  S  I  W  C  W  *  K  N  L  S  W  S  A  I  G  N  K  D  G  P  S  N  A  R  L  T  V  E  Y  I  *  V  E  N  *  G  R  H  C  T  K  *  L  G  H  A  G  E  I  W  P  H  L  N  Q  T  S  S  S  *  S  C  S  T  S  T  L  K  F  K  I  R  C  F  L  E  K  A  M  D  N  K  H  R  N  *  *  L  Y  F  Q  *  K  Y  K  H  K  L  C  Y  F  I  G  K  E  I  R  A  Y  L  E  A  M  L  L  S  L  D  H  I  *  N  Y  Y  I  F  F  *  K  K  *  I  N  I  Y  E  S  I  F  K  V  S  Y  N  N  T  M  M  I  G  </first_frame>
            <second_frame>  G  A  S  *  S  Q  D  L  F  D  A  G  T  D  T  S  S  N  I  V  E  W  A  M  T  E  L  L  R  S  P  D  I  M  K  R  V  Q  A  E  L  V  Q  V  L  G  E  G  N  L  M  E  E  T  D  V  A  R  L  P  Y  L  Q  C  I  I  K  E  T  Y  R  M  H  P  P  A  P  F  L  V  P  R  G  V  E  Q  D  V  E  L  C  G  Y  T  V  P  K  D  S  K  V  L  I  N  V  W  A  I  G  R  D  S  T  F  W  K  D  P  L  V  F  N  P  D  R  F  M  D  S  K  L  D  V  R  G  Q  N  F  E  L  I  P  F  G  A  G  R  R  I  C  P  G  L  P  L  A  I  R  M  V  P  V  M  L  G  S  L  L  N  T  F  K  W  K  I  E  G  D  I  A  P  N  D  L  D  M  Q  E  K  F  G  L  T  L  T  R  L  H  P  L  R  A  V  P  L  P  L  *  N  S  K  S  D  A  S  *  K  K  Q  W  I  I  N  T  V  T  N  N  Y  I  S  N  K  S  I  S  T  N  Y  V  I  L  *  G  R  K  S  E  R  I  *  R  P  C  S  S  P  *  I  I  Y  R  I  I  I  F  F  F  K  K  N  K  *  I  Y  M  N  P  Y  L  K  Y  H  I  I  I  Q  *  *  L  G </second_frame>
            <third_frame>   V  H  L  N  L  R  T  Y  L  M  P  E  L  I  Q  V  R  T  *  W  N  G  L  *  L  S  F  L  D  L  Q  I  L  *  K  E  S  K  L  S  S  Y  K  S  S  E  K  V  T  *  W  K  K  L  T  L  P  D  S  L  T  C  N  A  L  L  K  K  L  T  G  C  T  L  Q  L  L  F  W  Y  L  E  E  *  S  K  M  L  S  C  V  A  T  L  S  L  K  I  Q  K  C  *  L  M  C  G  Q  L  A  G  T  Q  L  F  G  K  T  L  W  C  L  I  L  I  D  L  W  I  Q  N  W  M  C  E  V  K  I  L  S  *  F  H  L  V  L  V  E  E  F  V  L  V  C  H  W  Q  *  G  W  S  Q  *  C  *  A  H  C  *  I  H  L  S  G  K  L  R  A  T  L  H  Q  M  T  W  T  C  R  R  N  L  A  S  P  *  P  D  F  I  L  L  E  L  F  H  F  H  S  E  I  Q  N  Q  M  L  P  R  K  S  N  G  *  *  T  P  *  L  I  I  I  F  P  I  K  V  *  A  Q  I  M  L  F  Y  R  E  G  N  Q  S  V  S  R  G  H  A  P  L  P  R  S  Y  I  E  L  L  Y  F  F  L  K  K  I  N  K  Y  I  *  I  H  I  *  S  I  I  *  *  Y  N  D  D  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69532" stop="70143"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQDLFDAGTDTSSNIVEWAMTELLRSPDIMKRVQAELVQVLGEGNLMEETDVARLPYLQCIIKETYRMHPPAPFLVPRGVEQDVELCGYTVPKDSKVLINVWAIGRDSTFWKDPLVFNPDRFMDSKLDVRGQNFELIPFGAGRRICPGLPLAIRMVPVMLGSLLNTFKWKIEGDIAPNDLDMQEKFGLTLTRLHPLRAVPLPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68184" e_stop="68622"/>
            <exon e_start="69009" e_stop="69447"/>
            <exon e_start="69538" e_stop="69595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.975" e_score="0.975"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68184" e_stop="68622" e_length="439"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.833">
            <gDNA_intron_boundary i_start="68623" i_stop="69008" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="69009" e_stop="69447" e_length="439"/>
          </exon>
          <intron i_serial="2" don_prob="0.848" acc_prob="0.975">
            <gDNA_intron_boundary i_start="69448" i_stop="69537" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.914">
            <gDNA_exon_boundary e_start="69538" e_stop="69595" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68184" stop="68622"/>
              <exon start="69009" stop="69198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68205" stop="68622"/>
              <exon start="69009" stop="69409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68245" stop="68622"/>
              <exon start="69009" stop="69319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68290" stop="68622"/>
              <exon start="69009" stop="69447"/>
              <exon start="69538" stop="69595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTATTGCACTCCTCTAGCTCTCTTGCTTGCCTGGACTTTGTTCCAATGCTTCAATTTATTAACAACAAATAGAAGCAGAAAGGTTCCTCCAGGACCCTTTCCATTACCCATAATCGGAAATCTTCATTTACTGGGGAATCAACCTCATAAATCCCTTGCAAAACTCGCCGATTCGCATGGCGCAGTGATGCGTCTGAAGTTGGGGCAAATAACAACTGTGGTGATTTCTTCTTCAGATATGGCCAAACAAGTGCTCCAAAAGCAAGATTCAGCCTTTTCTAGCAGGTCTATTCCTGATATAGTCAAAGAGGAAAATTTTCACATGTTTTCCGTTGGTTGGCTTCCTGCTTCCCATCCTCAATGGAGAATTTTCCGCAAATTCATGACTTCCCACATCTTCTCTATTAACAAGCTTGATGCCAGTCACCACCTTAG : GTACAAGAAGTTGGAAGAACTTGTTGGTTACTGTAAAAAGAGTAGCCAGATTGGAGAGGCGGTAGATATTGGTGGTGCAGTTTTCAGGACTATGTTGAACTTACTTTCCAACACTCTCTTCTCAAAGGACTTGGCAGATCCGTATGAAAATTCTGGTAAAGAATTTAAGGAATTGATGGAGGGAATGATGAAGGAGATGGGTAAACCAAAATTGGTAGACTACTTTCCCGTCCTGAAAATAGTGCATCCGCAAGGTCTAAGTCGATATAATTCTCATTTGGGGAAACTACTAAAGCTATTTAATGGATTCATAAATGAGAGGCTGGAGATAAGGAAATCCCCAAGTTATCAAAACACTGATGTTTTAGATGCCTTAATCACATCAAGTGAACAGAATCCCCAAGAAATTAATCACATGCATATAGCAACATTGTGTTTG : GACCTATTTGATGCCGGAACTGATACAAGTTCGAACATAGTGGAATGGGCTATGACTG</gDNA_template>
            <first_frame> V  F  I  A  L  L  *  L  S  C  L  P  G  L  C  S  N  A  S  I  Y  *  Q  Q  I  E  A  E  R  F  L  Q  D  P  F  H  Y  P  *  S  E  I  F  I  Y  W  G  I  N  L  I  N  P  L  Q  N  S  P  I  R  M  A  Q  *  C  V  *  S  W  G  K  *  Q  L  W  *  F  L  L  Q  I  W  P  N  K  C  S  K  S  K  I  Q  P  F  L  A  G  L  F  L  I  *  S  K  R  K  I  F  T  C  F  P  L  V  G  F  L  L  P  I  L  N  G  E  F  S  A  N  S  *  L  P  T  S  S  L  L  T  S  L  M  P  V  T  T  L   : G  T  R  S  W  K  N  L  L  V  T  V  K  R  V  A  R  L  E  R  R  *  I  L  V  V  Q  F  S  G  L  C  *  T  Y  F  P  T  L  S  S  Q  R  T  W  Q  I  R  M  K  I  L  V  K  N  L  R  N  *  W  R  E  *  *  R  R  W  V  N  Q  N  W  *  T  T  F  P  S  *  K  *  C  I  R  K  V  *  V  D  I  I  L  I  W  G  N  Y  *  S  Y  L  M  D  S  *  M  R  G  W  R  *  G  N  P  Q  V  I  K  T  L  M  F  *  M  P  *  S  H  Q  V  N  R  I  P  K  K  L  I  T  C  I  *  Q  H  C  V  W :   T  Y  L  M  P  E  L  I  Q  V  R  T  *  W  N  G  L  *  L </first_frame>
            <second_frame>  F  L  L  H  S  S  S  S  L  A  C  L  D  F  V  P  M  L  Q  F  I  N  N  K  *  K  Q  K  G  S  S  R  T  L  S  I  T  H  N  R  K  S  S  F  T  G  E  S  T  S  *  I  P  C  K  T  R  R  F  A  W  R  S  D  A  S  E  V  G  A  N  N  N  C  G  D  F  F  F  R  Y  G  Q  T  S  A  P  K  A  R  F  S  L  F  *  Q  V  Y  S  *  Y  S  Q  R  G  K  F  S  H  V  F  R  W  L  A  S  C  F  P  S  S  M  E  N  F  P  Q  I  H  D  F  P  H  L  L  Y  *  Q  A  *  C  Q  S  P  P  *  :  V  Q  E  V  G  R  T  C  W  L  L  *  K  E  *  P  D  W  R  G  G  R  Y  W  W  C  S  F  Q  D  Y  V  E  L  T  F  Q  H  S  L  L  K  G  L  G  R  S  V  *  K  F  W  *  R  I  *  G  I  D  G  G  N  D  E  G  D  G  *  T  K  I  G  R  L  L  S  R  P  E  N  S  A  S  A  R  S  K  S  I  *  F  S  F  G  E  T  T  K  A  I  *  W  I  H  K  *  E  A  G  D  K  E  I  P  K  L  S  K  H  *  C  F  R  C  L  N  H  I  K  *  T  E  S  P  R  N  *  S  H  A  Y  S  N  I  V  F   : G  P  I  *  C  R  N  *  Y  K  F  E  H  S  G  M  G  Y  D   </second_frame>
            <third_frame>   F  Y  C  T  P  L  A  L  L  L  A  W  T  L  F  Q  C  F  N  L  L  T  T  N  R  S  R  K  V  P  P  G  P  F  P  L  P  I  I  G  N  L  H  L  L  G  N  Q  P  H  K  S  L  A  K  L  A  D  S  H  G  A  V  M  R  L  K  L  G  Q  I  T  T  V  V  I  S  S  S  D  M  A  K  Q  V  L  Q  K  Q  D  S  A  F  S  S  R  S  I  P  D  I  V  K  E  E  N  F  H  M  F  S  V  G  W  L  P  A  S  H  P  Q  W  R  I  F  R  K  F  M  T  S  H  I  F  S  I  N  K  L  D  A  S  H  H  L  R :   Y  K  K  L  E  E  L  V  G  Y  C  K  K  S  S  Q  I  G  E  A  V  D  I  G  G  A  V  F  R  T  M  L  N  L  L  S  N  T  L  F  S  K  D  L  A  D  P  Y  E  N  S  G  K  E  F  K  E  L  M  E  G  M  M  K  E  M  G  K  P  K  L  V  D  Y  F  P  V  L  K  I  V  H  P  Q  G  L  S  R  Y  N  S  H  L  G  K  L  L  K  L  F  N  G  F  I  N  E  R  L  E  I  R  K  S  P  S  Y  Q  N  T  D  V  L  D  A  L  I  T  S  S  E  Q  N  P  Q  E  I  N  H  M  H  I  A  T  L  C  L  :  D  L  F  D  A  G  T  D  T  S  S  N  I  V  E  W  A  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68186" stop="68622"/>
                    <exon start="69009" stop="69447"/>
                    <exon start="69538" stop="69594"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYCTPLALLLAWTLFQCFNLLTTNRSRKVPPGPFPLPIIGNLHLLGNQPHKSLAKLADSHGAVMRLKLGQITTVVISSSDMAKQVLQKQDSAFSSRSIPDIVKEENFHMFSVGWLPASHPQWRIFRKFMTSHIFSINKLDASHHLRYKKLEELVGYCKKSSQIGEAVDIGGAVFRTMLNLLSNTLFSKDLADPYENSGKEFKELMEGMMKEMGKPKLVDYFPVLKIVHPQGLSRYNSHLGKLLKLFNGFINERLEIRKSPSYQNTDVLDALITSSEQNPQEINHMHIATLCLDLFDAGTDTSSNIVEWAMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="75772" PGL_stop="73320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75772" e_stop="75638"/>
            <exon e_start="75555" e_stop="75519"/>
            <exon e_start="74867" e_stop="74782"/>
            <exon e_start="73824" e_stop="73729"/>
            <exon e_start="73423" e_stop="73320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.987" e_score="0.970"/>
          <exon-intron don_prob="0.967" acc_prob="0.684" e_score="0.946"/>
          <exon-intron don_prob="0.972" acc_prob="0.951" e_score="0.965"/>
          <exon-intron don_prob="0.801" acc_prob="0.948" e_score="0.948"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="75772" e_stop="75638" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75637" i_stop="75556" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="75555" e_stop="75519" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.684">
            <gDNA_intron_boundary i_start="75518" i_stop="74868" i_length="651"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="74867" e_stop="74782" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.951">
            <gDNA_intron_boundary i_start="74781" i_stop="73825" i_length="957"/>
          </intron>
          <exon e_serial="4" e_score="0.948">
            <gDNA_exon_boundary e_start="73824" e_stop="73729" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.801" acc_prob="0.948">
            <gDNA_intron_boundary i_start="73728" i_stop="73424" i_length="305"/>
          </intron>
          <exon e_serial="5" e_score="0.913">
            <gDNA_exon_boundary e_start="73423" e_stop="73320" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75772" stop="75638"/>
              <exon start="75555" stop="75519"/>
              <exon start="74867" stop="74782"/>
              <exon start="73824" stop="73729"/>
              <exon start="73423" stop="73320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAAACAAGAACCACATGCACTAGGGTTAATCAAATTCGGCATTGCGAAATCGTTCGTCTTCAAATTCTGGATCATCTCAAGAAATACTACGAGTGGAATCATGAACTGTGAAGTTTTCAAGCTGAAAGAACTT : GATGTGGAGCAATTTGAGATACAAGATGTTCTCCAAT : GCATTCTTCATTCAATCATGTTTCACAGAGCATTAGGTCTGATATATCCAAAGAATGTGGATTCGGAACTCTTTGAGATAACATAT : ATGCAGTGTAGTGATTTTGTAATTGAGAGGAAAGTTGATGAGAAGATTACCCAATTTATCGATAAGGTGAAGAAGCACCCCAACCAGAAACACCAG : ATCTGTGTATCCTTCTATGAATCCAAAAACAAACAGACCTCATGGTTCACAAAGAACGTTGAACGTTGCTACTGGGAACACTGGTACATAAATTTGAGCGTGGC</gDNA_template>
            <first_frame> A  K  Q  E  P  H  A  L  G  L  I  K  F  G  I  A  K  S  F  V  F  K  F  W  I  I  S  R  N  T  T  S  G  I  M  N  C  E  V  F  K  L  K  E  L  :  D  V  E  Q  F  E  I  Q  D  V  L  Q   : C  I  L  H  S  I  M  F  H  R  A  L  G  L  I  Y  P  K  N  V  D  S  E  L  F  E  I  T  Y  :  M  Q  C  S  D  F  V  I  E  R  K  V  D  E  K  I  T  Q  F  I  D  K  V  K  K  H  P  N  Q  K  H  Q  :  I  C  V  S  F  Y  E  S  K  N  K  Q  T  S  W  F  T  K  N  V  E  R  C  Y  W  E  H  W  Y  I  N  L  S  V   </first_frame>
            <second_frame>  P  N  K  N  H  M  H  *  G  *  S  N  S  A  L  R  N  R  S  S  S  N  S  G  S  S  Q  E  I  L  R  V  E  S  *  T  V  K  F  S  S  *  K  N  L :   M  W  S  N  L  R  Y  K  M  F  S  N  :  A  F  F  I  Q  S  C  F  T  E  H  *  V  *  Y  I  Q  R  M  W  I  R  N  S  L  R  *  H  I :   C  S  V  V  I  L  *  L  R  G  K  L  M  R  R  L  P  N  L  S  I  R  *  R  S  T  P  T  R  N  T  R :   S  V  Y  P  S  M  N  P  K  T  N  R  P  H  G  S  Q  R  T  L  N  V  A  T  G  N  T  G  T  *  I  *  A  W  </second_frame>
            <third_frame>   Q  T  R  T  T  C  T  R  V  N  Q  I  R  H  C  E  I  V  R  L  Q  I  L  D  H  L  K  K  Y  Y  E  W  N  H  E  L  *  S  F  Q  A  E  R  T   : *  C  G  A  I  *  D  T  R  C  S  P  M :   H  S  S  F  N  H  V  S  Q  S  I  R  S  D  I  S  K  E  C  G  F  G  T  L  *  D  N  I   : Y  A  V  *  *  F  C  N  *  E  E  S  *  *  E  D  Y  P  I  Y  R  *  G  E  E  A  P  Q  P  E  T  P   : D  L  C  I  L  L  *  I  Q  K  Q  T  D  L  M  V  H  K  E  R  *  T  L  L  L  G  T  L  V  H  K  F  E  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75772" stop="75638"/>
                    <exon start="75555" stop="75519"/>
                    <exon start="74867" stop="74782"/>
                    <exon start="73824" stop="73729"/>
                    <exon start="73423" stop="73322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKQEPHALGLIKFGIAKSFVFKFWIISRNTTSGIMNCEVFKLKELDVEQFEIQDVLQCILHSIMFHRALGLIYPKNVDSELFEITYMQCSDFVIERKVDEKITQFIDKVKKHPNQKHQICVSFYESKNKQTSWFTKNVERCYWEHWYINLSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="84475" PGL_stop="85529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84475" e_stop="85529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="84475" e_stop="85529" e_length="1055"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84475" stop="85063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84974" stop="85529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84975" stop="85529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84975" stop="85529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84975" stop="85431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85194" stop="85529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTACTCTCTTTCACATTTTCATTCTATCATCAAAAGAGTAAAACTAAGATCAATCTCATTTGCTTTTCTCTTCTTTTTTTTTTTTTAAAAAATGATTCAAGAGCTGTTTGCAGGAAACACTACACTTATCGGAGATGATAATATTTCTAATATTACTCCTTCCTCCTCTCCTATTTCTTGTACTACTTCTAATTCCAATATTGCCCCTGCAAGTGCAAATGCAAACTCTGAAAATCTTAGATGTCCGCGTTGTGATTCCCCAAACACCAAGTTTTGTTACTACAACAACTACAATTTAACTCAGCCTCGTCATTTCTGCAAGACTTGTCGACGTTATTGGACTAAAGGAGGCGCGTTACGCAACGTTCCTATAGGTGGTGGTTGCAGAAAAAACAAGTCCATCGCTACATCAAAATCAACTGCTGCAAAATTCAAAAATTCACTTCCGTTTGAGTTTATTGGAAAATCAGGCATTTTTGGAGGGTTCGAGCAGGAAATAATACCTTCAAATTATGATAATAATAACCCTTTTCTCTTTTCCTCACCTCATCAGAATCATAATCCTATTCTTTCCTTACTTAAAGGAAATCTTCATAAATCAATTGGAGTGAATCAATTTCCTTCCAACAACGGTATATGGAAAAATAATTATGAAGAAAACGTTGGTGAAGTCCAGAATAGTCGAGGATTTCAAGAGCTATATCAAAGGCTAAAAGCGTCAACAAATCGATGTTATACAGATAATATGCATGGACCATCATCATCGTCAATGATTTTGGATTCGGCTCCGGTAACTGGAGGAGAGTTGGGTTGCTGGAACCCGACCCTTTCAACATGGTTGGATCTGCCAACAGCAAATGGGGCATATCTTTAATTAATAAGTAATTTACTATTTTACTATTAGGGTGAAGGGTGCATGAGATGTTTGTGGTATACTGGGGATACTTGGACATGGGTGTGGCTTAGATTTTATTTGTTTTTATTCTGTTTTTCTCTTTGCTTTTTGTGTGTGTTTCATCTATAAAAATCAATGTACTAAATTTATTTTTCC</gDNA_template>
            <first_frame> F  I  T  L  F  H  I  F  I  L  S  S  K  E  *  N  *  D  Q  S  H  L  L  F  S  S  F  F  F  F  K  K  *  F  K  S  C  L  Q  E  T  L  H  L  S  E  M  I  I  F  L  I  L  L  L  P  P  L  L  F  L  V  L  L  L  I  P  I  L  P  L  Q  V  Q  M  Q  T  L  K  I  L  D  V  R  V  V  I  P  Q  T  P  S  F  V  T  T  T  T  T  I  *  L  S  L  V  I  S  A  R  L  V  D  V  I  G  L  K  E  A  R  Y  A  T  F  L  *  V  V  V  A  E  K  T  S  P  S  L  H  Q  N  Q  L  L  Q  N  S  K  I  H  F  R  L  S  L  L  E  N  Q  A  F  L  E  G  S  S  R  K  *  Y  L  Q  I  M  I  I  I  T  L  F  S  F  P  H  L  I  R  I  I  I  L  F  F  P  Y  L  K  E  I  F  I  N  Q  L  E  *  I  N  F  L  P  T  T  V  Y  G  K  I  I  M  K  K  T  L  V  K  S  R  I  V  E  D  F  K  S  Y  I  K  G  *  K  R  Q  Q  I  D  V  I  Q  I  I  C  M  D  H  H  H  R  Q  *  F  W  I  R  L  R  *  L  E  E  S  W  V  A  G  T  R  P  F  Q  H  G  W  I  C  Q  Q  Q  M  G  H  I  F  N  *  *  V  I  Y  Y  F  T  I  R  V  K  G  A  *  D  V  C  G  I  L  G  I  L  G  H  G  C  G  L  D  F  I  C  F  Y  S  V  F  L  F  A  F  C  V  C  F  I  Y  K  N  Q  C  T  K  F  I  F   </first_frame>
            <second_frame>  L  L  L  S  F  T  F  S  F  Y  H  Q  K  S  K  T  K  I  N  L  I  C  F  S  L  L  F  F  F  L  K  N  D  S  R  A  V  C  R  K  H  Y  T  Y  R  R  *  *  Y  F  *  Y  Y  S  F  L  L  S  Y  F  L  Y  Y  F  *  F  Q  Y  C  P  C  K  C  K  C  K  L  *  K  S  *  M  S  A  L  *  F  P  K  H  Q  V  L  L  L  Q  Q  L  Q  F  N  S  A  S  S  F  L  Q  D  L  S  T  L  L  D  *  R  R  R  V  T  Q  R  S  Y  R  W  W  L  Q  K  K  Q  V  H  R  Y  I  K  I  N  C  C  K  I  Q  K  F  T  S  V  *  V  Y  W  K  I  R  H  F  W  R  V  R  A  G  N  N  T  F  K  L  *  *  *  *  P  F  S  L  F  L  T  S  S  E  S  *  S  Y  S  F  L  T  *  R  K  S  S  *  I  N  W  S  E  S  I  S  F  Q  Q  R  Y  M  E  K  *  L  *  R  K  R  W  *  S  P  E  *  S  R  I  S  R  A  I  S  K  A  K  S  V  N  K  S  M  L  Y  R  *  Y  A  W  T  I  I  I  V  N  D  F  G  F  G  S  G  N  W  R  R  V  G  L  L  E  P  D  P  F  N  M  V  G  S  A  N  S  K  W  G  I  S  L  I  N  K  *  F  T  I  L  L  L  G  *  R  V  H  E  M  F  V  V  Y  W  G  Y  L  D  M  G  V  A  *  I  L  F  V  F  I  L  F  F  S  L  L  F  V  C  V  S  S  I  K  I  N  V  L  N  L  F  F  </second_frame>
            <third_frame>   Y  Y  S  L  S  H  F  H  S  I  I  K  R  V  K  L  R  S  I  S  F  A  F  L  F  F  F  F  F  *  K  M  I  Q  E  L  F  A  G  N  T  T  L  I  G  D  D  N  I  S  N  I  T  P  S  S  S  P  I  S  C  T  T  S  N  S  N  I  A  P  A  S  A  N  A  N  S  E  N  L  R  C  P  R  C  D  S  P  N  T  K  F  C  Y  Y  N  N  Y  N  L  T  Q  P  R  H  F  C  K  T  C  R  R  Y  W  T  K  G  G  A  L  R  N  V  P  I  G  G  G  C  R  K  N  K  S  I  A  T  S  K  S  T  A  A  K  F  K  N  S  L  P  F  E  F  I  G  K  S  G  I  F  G  G  F  E  Q  E  I  I  P  S  N  Y  D  N  N  N  P  F  L  F  S  S  P  H  Q  N  H  N  P  I  L  S  L  L  K  G  N  L  H  K  S  I  G  V  N  Q  F  P  S  N  N  G  I  W  K  N  N  Y  E  E  N  V  G  E  V  Q  N  S  R  G  F  Q  E  L  Y  Q  R  L  K  A  S  T  N  R  C  Y  T  D  N  M  H  G  P  S  S  S  S  M  I  L  D  S  A  P  V  T  G  G  E  L  G  C  W  N  P  T  L  S  T  W  L  D  L  P  T  A  N  G  A  Y  L  *  L  I  S  N  L  L  F  Y  Y  *  G  E  G  C  M  R  C  L  W  Y  T  G  D  T  W  T  W  V  W  L  R  F  Y  L  F  L  F  C  F  S  L  C  F  L  C  V  F  H  L  *  K  S  M  Y  *  I  Y  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84567" stop="85352"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMIQELFAGNTTLIGDDNISNITPSSSPISCTTSNSNIAPASANANSENLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIATSKSTAAKFKNSLPFEFIGKSGIFGGFEQEIIPSNYDNNNPFLFSSPHQNHNPILSLLKGNLHKSIGVNQFPSNNGIWKNNYEENVGEVQNSRGFQELYQRLKASTNRCYTDNMHGPSSSSMILDSAPVTGGELGCWNPTLSTWLDLPTANGAYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="88995" PGL_stop="88098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88995" e_stop="88521"/>
            <exon e_start="88412" e_stop="88098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.991" e_score="0.941"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="88995" e_stop="88521" e_length="475"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88520" i_stop="88413" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="88412" e_stop="88098" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88995" stop="88523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88961" stop="88521"/>
              <exon start="88412" stop="88098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88961" stop="88521"/>
              <exon start="88412" stop="88189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAAAGGCAATAGATAGTTGAGCGAAGAAGAGAATGGATTATGTAGGTGGATTGCTACTTGGCTGCACTTTGTTCCTGTGCATTGGTTGGTTTGCAATAAGCAAAAAATGTAACAAGAAACTTCCACCAGGACCATATCCCCTGCCATTGATTGGAAATCTTCACAACATACTTGGTGGTCAACCTCATCAGTCCCTTGACAAACTTGCACAAAAGTATGGACCAATAATCAGCCTCAGATTGGGCCTAAAAACGACAGTGGTGATATCTTCATCAGCCGTTGCTAAACAAGTTTTACAAAAGCAAGATTTGGCCTTCTCTAGCAGAACCATTCCAGATGCAATCTATGCCCTAAATCACTACCAATTCTCCGTGGTATGGCTACCAGTCGCTAATCGATGGAGAAGCCTTAGGAAAATCTTGAATTCCTATATCTTCTCTGCCAGCAGCCTTGATGCCAATCAACATCTCAG : GTCCGGAAAGATCCAAGATTTAATTGCTTATTGCGGTGGGTGTAGCCAAACTGGCGAGGCAGTGAATATAGAACAAGCTGCTTTCGAGACCTCTATGAATTTACTTTCCAATACCATATTTTCAAAGGATGTTGTGGATCCTTATGCAAATTCAGGTAAAGTATTCAAGGATGTGGTGTCCAGCATCACGGAAGATGCTGGTAAGCCTAATTTGTCTGATTATTTCCCCCTGTTTAAAACAATTGATCCTCAAGGAATAAGGCGAAGAGTAGGCAAACATTTTGGTAAGTTACTTCAACAATTTGAGGGATTGAT</gDNA_template>
            <first_frame> A  E  R  Q  *  I  V  E  R  R  R  E  W  I  M  *  V  D  C  Y  L  A  A  L  C  S  C  A  L  V  G  L  Q  *  A  K  N  V  T  R  N  F  H  Q  D  H  I  P  C  H  *  L  E  I  F  T  T  Y  L  V  V  N  L  I  S  P  L  T  N  L  H  K  S  M  D  Q  *  S  A  S  D  W  A  *  K  R  Q  W  *  Y  L  H  Q  P  L  L  N  K  F  Y  K  S  K  I  W  P  S  L  A  E  P  F  Q  M  Q  S  M  P  *  I  T  T  N  S  P  W  Y  G  Y  Q  S  L  I  D  G  E  A  L  G  K  S  *  I  P  I  S  S  L  P  A  A  L  M  P  I  N  I  S   : G  P  E  R  S  K  I  *  L  L  I  A  V  G  V  A  K  L  A  R  Q  *  I  *  N  K  L  L  S  R  P  L  *  I  Y  F  P  I  P  Y  F  Q  R  M  L  W  I  L  M  Q  I  Q  V  K  Y  S  R  M  W  C  P  A  S  R  K  M  L  V  S  L  I  C  L  I  I  S  P  C  L  K  Q  L  I  L  K  E  *  G  E  E  *  A  N  I  L  V  S  Y  F  N  N  L  R  D  *  </first_frame>
            <second_frame>  Q  K  G  N  R  *  L  S  E  E  E  N  G  L  C  R  W  I  A  T  W  L  H  F  V  P  V  H  W  L  V  C  N  K  Q  K  M  *  Q  E  T  S  T  R  T  I  S  P  A  I  D  W  K  S  S  Q  H  T  W  W  S  T  S  S  V  P  *  Q  T  C  T  K  V  W  T  N  N  Q  P  Q  I  G  P  K  N  D  S  G  D  I  F  I  S  R  C  *  T  S  F  T  K  A  R  F  G  L  L  *  Q  N  H  S  R  C  N  L  C  P  K  S  L  P  I  L  R  G  M  A  T  S  R  *  S  M  E  K  P  *  E  N  L  E  F  L  Y  L  L  C  Q  Q  P  *  C  Q  S  T  S  Q  :  V  R  K  D  P  R  F  N  C  L  L  R  W  V  *  P  N  W  R  G  S  E  Y  R  T  S  C  F  R  D  L  Y  E  F  T  F  Q  Y  H  I  F  K  G  C  C  G  S  L  C  K  F  R  *  S  I  Q  G  C  G  V  Q  H  H  G  R  C  W  *  A  *  F  V  *  L  F  P  P  V  *  N  N  *  S  S  R  N  K  A  K  S  R  Q  T  F  W  *  V  T  S  T  I  *  G  I  D </second_frame>
            <third_frame>   R  K  A  I  D  S  *  A  K  K  R  M  D  Y  V  G  G  L  L  L  G  C  T  L  F  L  C  I  G  W  F  A  I  S  K  K  C  N  K  K  L  P  P  G  P  Y  P  L  P  L  I  G  N  L  H  N  I  L  G  G  Q  P  H  Q  S  L  D  K  L  A  Q  K  Y  G  P  I  I  S  L  R  L  G  L  K  T  T  V  V  I  S  S  S  A  V  A  K  Q  V  L  Q  K  Q  D  L  A  F  S  S  R  T  I  P  D  A  I  Y  A  L  N  H  Y  Q  F  S  V  V  W  L  P  V  A  N  R  W  R  S  L  R  K  I  L  N  S  Y  I  F  S  A  S  S  L  D  A  N  Q  H  L  R :   S  G  K  I  Q  D  L  I  A  Y  C  G  G  C  S  Q  T  G  E  A  V  N  I  E  Q  A  A  F  E  T  S  M  N  L  L  S  N  T  I  F  S  K  D  V  V  D  P  Y  A  N  S  G  K  V  F  K  D  V  V  S  S  I  T  E  D  A  G  K  P  N  L  S  D  Y  F  P  L  F  K  T  I  D  P  Q  G  I  R  R  R  V  G  K  H  F  G  K  L  L  Q  Q  F  E  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88972" stop="88521"/>
                    <exon start="88412" stop="88100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKKRMDYVGGLLLGCTLFLCIGWFAISKKCNKKLPPGPYPLPLIGNLHNILGGQPHQSLDKLAQKYGPIISLRLGLKTTVVISSSAVAKQVLQKQDLAFSSRTIPDAIYALNHYQFSVVWLPVANRWRSLRKILNSYIFSASSLDANQHLRSGKIQDLIAYCGGCSQTGEAVNIEQAAFETSMNLLSNTIFSKDVVDPYANSGKVFKDVVSSITEDAGKPNLSDYFPLFKTIDPQGIRRRVGKHFGKLLQQFEGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="94594" PGL_stop="93237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94594" e_stop="94263"/>
            <exon e_start="94094" e_stop="93647"/>
            <exon e_start="93356" e_stop="93237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94594" e_stop="94263" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.972">
            <gDNA_intron_boundary i_start="94262" i_stop="94095" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94094" e_stop="93647" e_length="448"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93646" i_stop="93357" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93356" e_stop="93237" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94594" stop="94263"/>
              <exon start="94094" stop="93647"/>
              <exon start="93356" stop="93237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCATTGATTGGAAATTTGCATAATATTGTTGGCGATCAACCTCACAAGTCACTTGCTAGGCTTGCCCAAATATATGGGCCAATGATGAGCCTCAGGATGGGGCAAATAACTACAGTGGTAATATCTTCATCAGCCGTTGCAAAACAAGTCTTACAAAAACAAGATTTGGCCTTTTCCAGCAGAACGATTCCTGATGCAATCTGTGCCAATAATCACCATCAGTTCTCTGTTGTGTTTCTACCAGCTGCCTCTCGCTGGAGAAGCCTAAGGAAAATTTTGAATTCTAATATGTTCTCCAGCAACAAGCTTGACGCAACCCAGCATCTCAG : GTCCCAAAGGATGCAAGATTTTATTGGTTATTGCAGCAAGTGTAGCCAAACAGGCGAGTCAGTGAATATAGGCAAAGCTGCTTTCGAGACCATGGTTAATTTACTTTCCAATACCATTTTTTCTAAGGATGTAGTGGACCCTTATGCAAATTCAGGTAAAGAATTTAAGGATGTGATCAGGAGCGTCTTGGAGGAATCTGGTAAGCCCAATTTCGCCGATTATTTTCCCCTCTTGAAAAGGATTGATCCTCAAGGGATAAGGCGACGCACAGGCAAGCATTTTGATAAGCTGCTTCACCATATTATGAAGGGATTGATAGACGAACGATTGGAAAAAAGGAGGAAATCACAAAATGGCAGTAGAACAGATTTTCTCCAAGTTATGTTGAATACTAGCGAAGAAGATCCGCAGGCAATCGATAGAGATCATATACAACACTTGTGCCTG : GACCTTTTCGTTGCGGGAACGGATACAACTTCAAGTACATTAGAATGGGCAATGGTAGAGGTCATGAGAAAACCATACATAATGAATAAAGCTAGAAGTGAGCTTGCAGATGTTATTGGC</gDNA_template>
            <first_frame> L  P  L  I  G  N  L  H  N  I  V  G  D  Q  P  H  K  S  L  A  R  L  A  Q  I  Y  G  P  M  M  S  L  R  M  G  Q  I  T  T  V  V  I  S  S  S  A  V  A  K  Q  V  L  Q  K  Q  D  L  A  F  S  S  R  T  I  P  D  A  I  C  A  N  N  H  H  Q  F  S  V  V  F  L  P  A  A  S  R  W  R  S  L  R  K  I  L  N  S  N  M  F  S  S  N  K  L  D  A  T  Q  H  L  R :   S  Q  R  M  Q  D  F  I  G  Y  C  S  K  C  S  Q  T  G  E  S  V  N  I  G  K  A  A  F  E  T  M  V  N  L  L  S  N  T  I  F  S  K  D  V  V  D  P  Y  A  N  S  G  K  E  F  K  D  V  I  R  S  V  L  E  E  S  G  K  P  N  F  A  D  Y  F  P  L  L  K  R  I  D  P  Q  G  I  R  R  R  T  G  K  H  F  D  K  L  L  H  H  I  M  K  G  L  I  D  E  R  L  E  K  R  R  K  S  Q  N  G  S  R  T  D  F  L  Q  V  M  L  N  T  S  E  E  D  P  Q  A  I  D  R  D  H  I  Q  H  L  C  L  :  D  L  F  V  A  G  T  D  T  T  S  S  T  L  E  W  A  M  V  E  V  M  R  K  P  Y  I  M  N  K  A  R  S  E  L  A  D  V  I  G </first_frame>
            <second_frame>  F  H  *  L  E  I  C  I  I  L  L  A  I  N  L  T  S  H  L  L  G  L  P  K  Y  M  G  Q  *  *  A  S  G  W  G  K  *  L  Q  W  *  Y  L  H  Q  P  L  Q  N  K  S  Y  K  N  K  I  W  P  F  P  A  E  R  F  L  M  Q  S  V  P  I  I  T  I  S  S  L  L  C  F  Y  Q  L  P  L  A  G  E  A  *  G  K  F  *  I  L  I  C  S  P  A  T  S  L  T  Q  P  S  I  S   : G  P  K  G  C  K  I  L  L  V  I  A  A  S  V  A  K  Q  A  S  Q  *  I  *  A  K  L  L  S  R  P  W  L  I  Y  F  P  I  P  F  F  L  R  M  *  W  T  L  M  Q  I  Q  V  K  N  L  R  M  *  S  G  A  S  W  R  N  L  V  S  P  I  S  P  I  I  F  P  S  *  K  G  L  I  L  K  G  *  G  D  A  Q  A  S  I  L  I  S  C  F  T  I  L  *  R  D  *  *  T  N  D  W  K  K  G  G  N  H  K  M  A  V  E  Q  I  F  S  K  L  C  *  I  L  A  K  K  I  R  R  Q  S  I  E  I  I  Y  N  T  C  A  W :   T  F  S  L  R  E  R  I  Q  L  Q  V  H  *  N  G  Q  W  *  R  S  *  E  N  H  T  *  *  I  K  L  E  V  S  L  Q  M  L  L   </second_frame>
            <third_frame>   S  I  D  W  K  F  A  *  Y  C  W  R  S  T  S  Q  V  T  C  *  A  C  P  N  I  W  A  N  D  E  P  Q  D  G  A  N  N  Y  S  G  N  I  F  I  S  R  C  K  T  S  L  T  K  T  R  F  G  L  F  Q  Q  N  D  S  *  C  N  L  C  Q  *  S  P  S  V  L  C  C  V  S  T  S  C  L  S  L  E  K  P  K  E  N  F  E  F  *  Y  V  L  Q  Q  Q  A  *  R  N  P  A  S  Q  :  V  P  K  D  A  R  F  Y  W  L  L  Q  Q  V  *  P  N  R  R  V  S  E  Y  R  Q  S  C  F  R  D  H  G  *  F  T  F  Q  Y  H  F  F  *  G  C  S  G  P  L  C  K  F  R  *  R  I  *  G  C  D  Q  E  R  L  G  G  I  W  *  A  Q  F  R  R  L  F  S  P  L  E  K  D  *  S  S  R  D  K  A  T  H  R  Q  A  F  *  *  A  A  S  P  Y  Y  E  G  I  D  R  R  T  I  G  K  K  E  E  I  T  K  W  Q  *  N  R  F  S  P  S  Y  V  E  Y  *  R  R  R  S  A  G  N  R  *  R  S  Y  T  T  L  V  P   : G  P  F  R  C  G  N  G  Y  N  F  K  Y  I  R  M  G  N  G  R  G  H  E  K  T  I  H  N  E  *  S  *  K  *  A  C  R  C  Y  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94594" stop="94263"/>
                    <exon start="94094" stop="93647"/>
                    <exon start="93356" stop="93237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPLIGNLHNIVGDQPHKSLARLAQIYGPMMSLRMGQITTVVISSSAVAKQVLQKQDLAFSSRTIPDAICANNHHQFSVVFLPAASRWRSLRKILNSNMFSSNKLDATQHLRSQRMQDFIGYCSKCSQTGESVNIGKAAFETMVNLLSNTIFSKDVVDPYANSGKEFKDVIRSVLEESGKPNFADYFPLLKRIDPQGIRRRTGKHFDKLLHHIMKGLIDERLEKRRKSQNGSRTDFLQVMLNTSEEDPQAIDRDHIQHLCLDLFVAGTDTTSSTLEWAMVEVMRKPYIMNKARSELADVIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="108684" PGL_stop="108233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108684" e_stop="108233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="108684" e_stop="108233" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108684" stop="108233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108683" stop="108235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATATAAGATGTTGGTATGAATTTCTTCTCAACTCTTTCTCATTCACTAGCATCTGCAGCCGTTCTGTTCAATTCAAGTCCATTTCCTTCTAATACTAAATAATTTGTCTTTTGAGGCAAATCAGGGGGTACTCTACACCTAGAAGTTCTCTAAATCTCACATCCACTTGCACTGTATTTAAAATTAAGAGGGATTTACCCTTCTTTGATGTTGCATTCAGTCTAAATTATTCCAATTAGCCCATTAGGTGGATATGATGAGGGGTTCTTGTTCTTTGCGTTTGCTCTAATAATCATTTCTTCCATTTATGCTCCTTCTGTTATTTACAGTGGTGTGATAGGTATATTTAAAATTTTATTTGAAAAATAATGCACCAATGTGATCATTAACTGAGTTGTGTTTGTGGTTGCACTAACTGTCCATTTTACAGATACTCATGATTCGACTT</gDNA_template>
            <first_frame> L  N  I  R  C  W  Y  E  F  L  L  N  S  F  S  F  T  S  I  C  S  R  S  V  Q  F  K  S  I  S  F  *  Y  *  I  I  C  L  L  R  Q  I  R  G  Y  S  T  P  R  S  S  L  N  L  T  S  T  C  T  V  F  K  I  K  R  D  L  P  F  F  D  V  A  F  S  L  N  Y  S  N  *  P  I  R  W  I  *  *  G  V  L  V  L  C  V  C  S  N  N  H  F  F  H  L  C  S  F  C  Y  L  Q  W  C  D  R  Y  I  *  N  F  I  *  K  I  M  H  Q  C  D  H  *  L  S  C  V  C  G  C  T  N  C  P  F  Y  R  Y  S  *  F  D   </first_frame>
            <second_frame>  *  I  *  D  V  G  M  N  F  F  S  T  L  S  H  S  L  A  S  A  A  V  L  F  N  S  S  P  F  P  S  N  T  K  *  F  V  F  *  G  K  S  G  G  T  L  H  L  E  V  L  *  I  S  H  P  L  A  L  Y  L  K  L  R  G  I  Y  P  S  L  M  L  H  S  V  *  I  I  P  I  S  P  L  G  G  Y  D  E  G  F  L  F  F  A  F  A  L  I  I  I  S  S  I  Y  A  P  S  V  I  Y  S  G  V  I  G  I  F  K  I  L  F  E  K  *  C  T  N  V  I  I  N  *  V  V  F  V  V  A  L  T  V  H  F  T  D  T  H  D  S  T  </second_frame>
            <third_frame>   K  Y  K  M  L  V  *  I  S  S  Q  L  F  L  I  H  *  H  L  Q  P  F  C  S  I  Q  V  H  F  L  L  I  L  N  N  L  S  F  E  A  N  Q  G  V  L  Y  T  *  K  F  S  K  S  H  I  H  L  H  C  I  *  N  *  E  G  F  T  L  L  *  C  C  I  Q  S  K  L  F  Q  L  A  H  *  V  D  M  M  R  G  S  C  S  L  R  L  L  *  *  S  F  L  P  F  M  L  L  L  L  F  T  V  V  *  *  V  Y  L  K  F  Y  L  K  N  N  A  P  M  *  S  L  T  E  L  C  L  W  L  H  *  L  S  I  L  Q  I  L  M  I  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0056J19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="110831" PGL_stop="111509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110831" e_stop="111509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="110831" e_stop="111509" e_length="679"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110831" stop="111509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110831" stop="111417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110835" stop="111120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACCAACTTATGCCACCATTGAGTGAGGCCTCTTCCATAGCAGCAGTTGTCATCAATAAGTGCAACTCCATAATCTCAATCAGCAAAGCACGCCAGCTCCATGCCCTCATCCTCACTTCTGTACCCGCGACCTCCAGATCTCCTTATGTATTCAACAACATTCTCTCTATGTACGCCCGATGTGGGTCTATCCAAGACTCACATATCCTGTTCGACAAAATGCCTGACAGAAACGTTGTCTCTTTCAACGCCCTCATTTCCGCCTATTCTCGATACCGCCACCTTGCCCATTGGACTTTCCATTTGCTTGCTCAATTGCAAAGTGAGAGCCTAAGACCAAATGGGTTAACTTTTACTAGTCTTTTAAATGCGTGTTCAGGTATCAAGAATCAGGTATTAGGCTCTATGCTTCATTCCCAGTGTATAAAGTTTGGATTTTTATACGATGTGTGCGTTCAAACCTCTGTTCTTGGGATGTACTTAAATTGTGGAGTTTTGGATTGTGCAGAGAAAGTTTTTTGCTACATGTATGATAAAGATTCCGTGGCTTGGAATACTCTATTCTTTGGGTATTTGGAAAATGGTAAGACCGTGGAAGGCCTTCAGCTGTTTGGCACCATGTTGAGGACTGGAGTTGTTCCTACGAATTTCACTTATACGACATTGTTGAGTGCTTGT</gDNA_template>
            <first_frame> L  P  T  Y  A  T  I  E  *  G  L  F  H  S  S  S  C  H  Q  *  V  Q  L  H  N  L  N  Q  Q  S  T  P  A  P  C  P  H  P  H  F  C  T  R  D  L  Q  I  S  L  C  I  Q  Q  H  S  L  Y  V  R  P  M  W  V  Y  P  R  L  T  Y  P  V  R  Q  N  A  *  Q  K  R  C  L  F  Q  R  P  H  F  R  L  F  S  I  P  P  P  C  P  L  D  F  P  F  A  C  S  I  A  K  *  E  P  K  T  K  W  V  N  F  Y  *  S  F  K  C  V  F  R  Y  Q  E  S  G  I  R  L  Y  A  S  F  P  V  Y  K  V  W  I  F  I  R  C  V  R  S  N  L  C  S  W  D  V  L  K  L  W  S  F  G  L  C  R  E  S  F  L  L  H  V  *  *  R  F  R  G  L  E  Y  S  I  L  W  V  F  G  K  W  *  D  R  G  R  P  S  A  V  W  H  H  V  E  D  W  S  C  S  Y  E  F  H  L  Y  D  I  V  E  C  L  </first_frame>
            <second_frame>  Y  Q  L  M  P  P  L  S  E  A  S  S  I  A  A  V  V  I  N  K  C  N  S  I  I  S  I  S  K  A  R  Q  L  H  A  L  I  L  T  S  V  P  A  T  S  R  S  P  Y  V  F  N  N  I  L  S  M  Y  A  R  C  G  S  I  Q  D  S  H  I  L  F  D  K  M  P  D  R  N  V  V  S  F  N  A  L  I  S  A  Y  S  R  Y  R  H  L  A  H  W  T  F  H  L  L  A  Q  L  Q  S  E  S  L  R  P  N  G  L  T  F  T  S  L  L  N  A  C  S  G  I  K  N  Q  V  L  G  S  M  L  H  S  Q  C  I  K  F  G  F  L  Y  D  V  C  V  Q  T  S  V  L  G  M  Y  L  N  C  G  V  L  D  C  A  E  K  V  F  C  Y  M  Y  D  K  D  S  V  A  W  N  T  L  F  F  G  Y  L  E  N  G  K  T  V  E  G  L  Q  L  F  G  T  M  L  R  T  G  V  V  P  T  N  F  T  Y  T  T  L  L  S  A  C </second_frame>
            <third_frame>   T  N  L  C  H  H  *  V  R  P  L  P  *  Q  Q  L  S  S  I  S  A  T  P  *  S  Q  S  A  K  H  A  S  S  M  P  S  S  S  L  L  Y  P  R  P  P  D  L  L  M  Y  S  T  T  F  S  L  C  T  P  D  V  G  L  S  K  T  H  I  S  C  S  T  K  C  L  T  E  T  L  S  L  S  T  P  S  F  P  P  I  L  D  T  A  T  L  P  I  G  L  S  I  C  L  L  N  C  K  V  R  A  *  D  Q  M  G  *  L  L  L  V  F  *  M  R  V  Q  V  S  R  I  R  Y  *  A  L  C  F  I  P  S  V  *  S  L  D  F  Y  T  M  C  A  F  K  P  L  F  L  G  C  T  *  I  V  E  F  W  I  V  Q  R  K  F  F  A  T  C  M  I  K  I  P  W  L  G  I  L  Y  S  L  G  I  W  K  M  V  R  P  W  K  A  F  S  C  L  A  P  C  *  G  L  E  L  F  L  R  I  S  L  I  R  H  C  *  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0056J19.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110832" stop="111509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQLMPPLSEASSIAAVVINKCNSIISISKARQLHALILTSVPATSRSPYVFNNILSMYARCGSIQDSHILFDKMPDRNVVSFNALISAYSRYRHLAHWTFHLLAQLQSESLRPNGLTFTSLLNACSGIKNQVLGSMLHSQCIKFGFLYDVCVQTSVLGMYLNCGVLDCAEKVFCYMYDKDSVAWNTLFFGYLENGKTVEGLQLFGTMLRTGVVPTNFTYTTLLSAC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 217 chains have been computed
$ 
$ memory statistics:
$ 352328 bytes spliced alignments in total
$ 161 spliced alignments have been stored
$ 2188 bytes was the average size of a spliced alignment
$ 31792 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1766 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 239 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:00:08
-->
