<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:51:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570435" ref_strand="+" ref_description="SGN-U570435 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>aacctggaatctatttgccgtggaagaacattccatgcaccatgtgaaatctcgttttagtttcgatttgatttcattaagtaaagtcctgaaaattttttctccaatttattttattttttttccattttcacgagggttgtcttttcatactgtgctgtaagcgagagtactttgttttatactactaaatgagttgtattttataataaaatgatgcaaatgtaatgaatgtataattttcattttatgtaagctaaactaactgtcatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="14885" stop="15760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15185" g_stop="15460" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-U570435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15185" e_stop="15460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGGAATCTATTTGCCGTGGAAGAACATTCCATGCACCATGTGAAATCTCGTTTTAGTTTCGATTTGATTTCATTAAGTAAAGTCCTGAAAATTTTTTCTCCAATTTATTTTATTTTTTTTCCATTTTCACGAGGGTTGTCTTTTCATACTGTGCTGTAAGCGAGAGTACTTTGTTTTATACTACTAAATGAGTTGTATTTTATAATAAAATGATGCAAATGTAATGAATGTATAATTTTCATTTTATGTAAGCTAAACTAACTGTCATGCCT</genome_strand>
        <mrna_strand>AACCTGGAATCTATTTGCCGTGGAAGAACATTCCATGCACCATGTGAAATCTCGTTTTAGTTTCGATTTGATTTCATTAAGTAAAGTCCTGAAAATTTTTTCTCCAATTTATTTTATTTTTTTTCCATTTTCACGAGGGTTGTCTTTTCATACTGTGCTGTAAGCGAGAGTACTTTGTTTTATACTACTAAATGAGTTGTATTTTATAATAAAATGATGCAAATGTAATGAATGTATAATTTTCATTTTATGTAAGCTAAACTAACTGTCATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567439" ref_strand="+" ref_description="SGN-U567439 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157355030|emb|CAO48391.1| (e_value=2e-32) unnamed; (*ATH) AT2G34930.1 (e_value=2e-26)  Symbol: None | disease resistance family protein, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.1 (Lycopersicon pimpinellifolium) gi:1184075:gb:AAC15779 | chr2:14744145-14746983 REVERSE | Aliases: F19I3.16, F... ; (*SWP) sp|Q8L899|BRI1_SOLPE (e_value=3e-14) Systemin receptor SR160 OS=Solanum peruvianum; ">
      <seq>cagaaacagactttctggtccattgccttcatccttgaacaactgcacacgattgtggaaaatagacatgaatgagaatgagttagatggaaatttaccaccttggtttggtacactttcaaagctgatagtcctgagtcttcggtctaataaattcgatggtgaactagctccagaactttgcaagctcaatgatcttcaaatcttggatcttgccaacaacaatttgtttggagctatacctcggtgtgttaacaatttcacagcaatggtgaatggaaggaaggaaattagagacggagacgacgagatggataattcttattatgttggagttttcagggagagtgcaagaatagcaactaagggtaacatgtatcagtatgataccattttgtgattgtttacaagcatggatctttctaacaatagcctttctggaaacattcctatgagtcttacaagtcttgttggattgagatcattaaatttctcccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="20819" stop="21916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21118" g_stop="21616" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-U567439" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21118" e_stop="21616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGATTATTCTTATTATGTTGGAGTTTTCAGGGAGAGTGCAAGAGTAGCAACTAAGGGTAACATGTATCAGTATGATACCATTTTGTCATTGTTTACAAGCATGGATCTTTCTAACAATAGCCTTTCTGGAAACATTCCTATGAGTCTTACAAGTCTTGTTGGATTGAGATCATTAAATTTCTCCCAC</genome_strand>
        <mrna_strand>CAGAAACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGATAATTCTTATTATGTTGGAGTTTTCAGGGAGAGTGCAAGAATAGCAACTAAGGGTAACATGTATCAGTATGATACCATTTTGTGATTGTTTACAAGCATGGATCTTTCTAACAATAGCCTTTCTGGAAACATTCCTATGAGTCTTACAAGTCTTGTTGGATTGAGATCATTAAATTTCTCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599489" ref_strand="+" ref_description="SGN-U599489 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157338603|emb|CAO41954.1| (e_value=2e-70) unnamed; (*ATH) AT4G19990.1 (e_value=2e-34)  Symbol: None | similar to far-red impaired responsive protein, putative [Arabidopsis thaliana] (TAIR:At3g22170.1); similar to putative far-red impaired response protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50996.1); similar to putative FA... ; ">
      <seq>ccgcctatttggagccctaattgttaatttttaggaacaaaattgagtacttggattgggggaacacattttacctcaatggttatggaccttgtgccgccatcaggtgatcatcacgagaaagaggactgtgggcggcatacttgtgtacgaattgaaagtgctaatggagaacttcgtggtactgtcactgcttcgaagagtgtttgcctgggaatagagaatgcaggaactagttggaatgaaagaacatctaatggcgcaaatgtactgccaaacacagattctttggctgtgaattgctataggaacttggagcctcatgatggtatggaatttgactcgaaagagaatgccttttcacattacaaagaatatgctaagtccattggattttcctcaataataaaggctagccgtcgatccagaatttctggaaaatttattgatgcaaaatttgtttgcagtagatatggaagtaagcgtgaaccttctacttctggcgcagaacctgttccaagtactgatgcagcaggaagtaatcccgtgaaaagaaaaaaaggcagaataaacaggtcttggtcaaaaacagattgtaaggcttgcttgcatgtaaagagaaggtctgatggaaggtgggttattcatacttttgtcaaagagcataaccatgaaatatttccggattggaccagttatcctccaggtcacaggaacattgatctgggtaaaaatgatgcagatgcatttcatgctatccgtgggaggacgaaaaagacttatgcctcgacatctaggcattctggttttgtgaagaaagttgagaaccaaaagaatggtggcacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="29104" stop="26659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28805" g_stop="28772" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28771" i_stop="27774" i_length="998">
            <donor d_prob="0.884" d_score="0.00"/>
            <acceptor a_prob="0.304" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27773" g_stop="26959" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="849" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-U599489" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28805" e_stop="28772"/>
          <exon e_start="27773" e_stop="26959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAATTTGGAGCCCTAATTGTTAATTTTTAGGTAAAAACTGTACTCTCTATACTCGCCCCCAATTTTCAGTAGCTGTGATCATCACAATTCTCTACTGGCACTGTAAATTCCTCTTTTTCCTTACATATGTTTATACATGCAAACTTTGTAGAGTATTTTATTTTTTTTCATATGAAAAGTTTTCTCAATTTTGGTTATTTTTATTTCTACATTTATATGTTCAAGTACTTGATAAATTGATATATGTTTGTGAATATGAGAATGTTGTGGTATAGGTGATTTTTATAGTTAAGTGATGTTTGTTATGATGAAGGCATTTTTCTAAAGGAAAAAACATATTTTCTTTGCTGTTTAGTTGGTGAGATGAAAATATTTTTCAAAGAAGTATATGTTACTCCATCCGAACCAATTTAAGTGTCTTAATTTCCTTTATAACCTGTTTAAAAGAATGTTTCTTTCTGTGGTTAGTAAGTTTTTCAATTTCAACATCTCAAGTGACAAGTTTAAGACCACAAGATTTAGAGAACTTCAGACATTTTTCAATTAAGATCACAAGATTCAAAATCACCCTTTTCTTAGACACTTAAATTGGGATGGAAGGATTAAGAGTTAAAATTATGTTGACAAACTCAAAGAGTCTTTTGGTAAAAAAAATTAGTGCTAGAGATTAGTACTTAATAATGCCTAGCAAGTATGAACAATATGGAGCTAACAACATCCTCTCTATATATTTTTGAAGAGATGTGTGCTTCTGTGACATGTTATATAGAAAAGAATTCTGTGGTTGTGCTTTGACAATGTTAGTTCTCATTATTTAATTAAAAAATCCAATTGTTGGTCATTAAAGAATACAAAAGGAAGAATTTCAAATTTACAAGATACGATCTATATGTTTCAGGAGACTATATTTATTGGATTAAGCATTTCTATCTCAAATAGAAACGAGAACTTATAAATTGTGGATGACTTGACTTGAATTTTGTTCTATTAGCCATAATGATGACCAAATAAGAAAAGACATGTTTCAGGAACAAAATTGAGTACTTGGATTGGGGGAACACATTTTACCTCAATGGTTATGGACCTTGTGCCGCCATCAGGTGATCATCACGAGAAAGAGGACTGTGGGCGGCATACTTGTGTACGAATTGAAAGTGCTAATGGAGAACTTCGTGGTACTGTCACTGCTTCGAAGAGTGTTTGCCTGGGAATAGAGAATGCAGGAACTAGTTGGAATGAAAGAACATCTAATGGCGCAAATGTACTGCCAAACACAGATTCTTTGGCTGTGAATTGCTATAGGAACTTGGAGCCTCATGATGGTATGGAATTTGACTCGAAAGAGAATGCCTTTTCACATTACAAAGAATATGCTAAGTCCATTGGATTTTCCTCAATAATAAAGGCTAGCCGTCGATCCAGAATTTCTGGAAAATTTATTGATGCAAAATTTGTTTGCAGTAGATATGGAAGTAAGCGTGAACCTTCTACTTCTGGCGCAGAACCTGTTCCAAGTACTGATGCAGCAGGAAGTAATCCCGTGAAAAGAAAAAAAGGCAGAATAAACAGGTCTTGGTCAAAAACAGATTGTAAGGCTTGCTTGCATGTAAAGAGAAGGTCTGATGGAAGGTGGGTTATTCATACTTTTGTCAAAGAGCATAACCATGAAATATTTCCGGATTGGACCAGTTATCCTCCAGGTCACAGGAACATTGATCTGGGTAAAAATGATGCAGATGCATTTCATGCTATCCGTGGGAGGACGAAAAAGACTTATGCCTCGACATCTAGGCATTCTGGTTTTGTGAAGAAAGTTGAGAAGCAAAAGAATGGTGGCACAAAT</genome_strand>
        <mrna_strand>CCGCCTATTTGGAGCCCTAATTGTTAATTTTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAAATTGAGTACTTGGATTGGGGGAACACATTTTACCTCAATGGTTATGGACCTTGTGCCGCCATCAGGTGATCATCACGAGAAAGAGGACTGTGGGCGGCATACTTGTGTACGAATTGAAAGTGCTAATGGAGAACTTCGTGGTACTGTCACTGCTTCGAAGAGTGTTTGCCTGGGAATAGAGAATGCAGGAACTAGTTGGAATGAAAGAACATCTAATGGCGCAAATGTACTGCCAAACACAGATTCTTTGGCTGTGAATTGCTATAGGAACTTGGAGCCTCATGATGGTATGGAATTTGACTCGAAAGAGAATGCCTTTTCACATTACAAAGAATATGCTAAGTCCATTGGATTTTCCTCAATAATAAAGGCTAGCCGTCGATCCAGAATTTCTGGAAAATTTATTGATGCAAAATTTGTTTGCAGTAGATATGGAAGTAAGCGTGAACCTTCTACTTCTGGCGCAGAACCTGTTCCAAGTACTGATGCAGCAGGAAGTAATCCCGTGAAAAGAAAAAAAGGCAGAATAAACAGGTCTTGGTCAAAAACAGATTGTAAGGCTTGCTTGCATGTAAAGAGAAGGTCTGATGGAAGGTGGGTTATTCATACTTTTGTCAAAGAGCATAACCATGAAATATTTCCGGATTGGACCAGTTATCCTCCAGGTCACAGGAACATTGATCTGGGTAAAAATGATGCAGATGCATTTCATGCTATCCGTGGGAGGACGAAAAAGACTTATGCCTCGACATCTAGGCATTCTGGTTTTGTGAAGAAAGTTGAGAACCAAAAGAATGGTGGCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570357" ref_strand="+" ref_description="SGN-U570357 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>ggaatccttcaactagaatatttcctctaatgaagaaaagctctggattgtctccttcacccgaagtgcttcgattggttgcatcctgtgttgcatcaggtcctcctattgctactagttcaagtttccttggaaatatggtccctctacccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgttgcaccaggtcctcctattgctactagtccaagtttccttggaaatatggtccctctccccaaatccgttgatcaggttgcttcttcagacacccaagattcacatgagaagcaggaaacagatcagacctcagctcctagtacattgggtccattccaggcagagaaaaaagttgaaactaatagcagggattctagcaaaacacagtcagattctgctcgagccagacaggaagaagtagaggaaatatcatctgaagggacagtctctgatcatcaggaggatgaccgtgaaccatagctcttccttatggggagctaattgttgtaatcatctcttgaagtgtaactaaagcctctgaccctccattgttctcagtttttgtagggcaggatgcagttaaagtagcaaatacagtacaggttagacaagttactatgtaaagcttgtgtaagagaaaagaaaaacatagaagttagcatataatattgttcgtcgtccttagagtcggaggtgttgacctcgtaggacttgtttagtagctgggttcagcatttcatttaggacttcctaagtgtcagaactatggttcatgtaagcaaaactttgcttggatgtattttatgtactttgcagcaatgttctgttgttagctgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38291" stop="36831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37992" g_stop="37131" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-U570357" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37992" e_stop="37131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTTGTTAGCTGTTGTTT</genome_strand>
        <mrna_strand>GGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTTGTTAGCTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603363" ref_strand="+" ref_description="SGN-U603363 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctagattcaccacctcccgcattgttatgtgaatcatgtgagatatttaaagacctgtcaagaaggctaggtaaattaacaaatctgctagcaccatcatcaatctccttttgcaaggcaaacctgttctgacaacccaagccaagaggacccaagctactgctgcccgacgaattcagcagaaatggtgactccgtaacaaagcttgatggagctcctagtctgtctgatggtcccgcattcaaatctcgaggaatgttcaccccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="38208" stop="39075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38508" g_stop="38775" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-U603363" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38508" e_stop="38775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATTCACCACCTCCCGCATTGTTATGTGAATCATGTGAGATATTTAAAGACCTGTCAAGAAGGCTAGGTAAATTAACAAATCTGCTAGCACCATCATCAATCTCCTTTTGCAAGGCAAACCTGTTCTGACAACCCAAGCCAAGAGGACCCAAGCTACTGCTGCCCGACGAATTCAGCAGAAATGGTGACTCCGTAACAAAGCTTGATGGAGCTCCTAGTCTGTCTGATGGTCCCGCATTCAAATCTCGAGGAATGTTCACCCGGT</genome_strand>
        <mrna_strand>CTAGATTCACCACCTCCCGCATTGTTATGTGAATCATGTGAGATATTTAAAGACCTGTCAAGAAGGCTAGGTAAATTAACAAATCTGCTAGCACCATCATCAATCTCCTTTTGCAAGGCAAACCTGTTCTGACAACCCAAGCCAAGAGGACCCAAGCTACTGCTGCCCGACGAATTCAGCAGAAATGGTGACTCCGTAACAAAGCTTGATGGAGCTCCTAGTCTGTCTGATGGTCCCGCATTCAAATCTCGAGGAATGTTCACCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573679" ref_strand="+" ref_description="SGN-U573679 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157342688|emb|CAO65400.1| (e_value=7e-79) unnamed; (*ATH) AT5G56740.1 (e_value=8e-73)  Symbol: None | histone acetyltransferase family protein, similar to histone acetyltransferase HAT B (Zea mays) GI:5579441; identical to cDNA histone acetyltransferase partial cds GI:21637256 | chr5:22970022-22972877 REVERSE | Aliases: MIK19.19, MIK1... ; (*SWP) sp|Q9FJT8|HATB_ARATH (e_value=7e-72) Histone acetyltransferase type B catalytic subunit OS=Arabidopsis thaliana GN=HAG2; ">
      <seq>gaccctaacgagcacaaatggggacgaagcatcattcctcctccgatccaatcagcgaacccaaaaagcgccgtcgcgtcggattctctaagaccgatgccggaattgaagctaacgactgcattactatatacattgtttctagcgcagaggaagttgactccccaaacagtttctgtcttgaaccaattgacttgaatcaattttttgaagacgatggcagaatatttgggtatcagggtctcaaaatcactattttggttagcttgatatcctttcatgcttatgctgatatttctttcgaaagctcatcagatggtggtagagggattacaaacgtaaagtctgctcttgagaatatttttggtgagagtcttgttgatgaaaaagatgccttcctgaaaacattttcaactgaaagtcagtatgttcggtctgttgtctcaaatgctgaaacactgcagcataaagtttcaaaaaatggctgtagcactgaatcgaactgttcagatgtagaggtattccggatcgctggctcgcctgtagggcagctttatagtagattggtgccgcttgtactactgttagtggatggtagcaaccctattgacgtccttgatcctggatgggaaatttatctcctagtccaggcggataagttgcttggttttgcagctgtttatcgtttctatcgttatcctggcagtacacgcatgcgacttgggcagatactggttatgcctccttaccacgtaaaggttatggtcgttttcttcttgaggtgttgaacagggttgcagtgtctgaaaatgtgtacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="+" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="67041" stop="68461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67340" g_stop="68161" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="+" ref_id="SGN-U573679" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67340" e_stop="68161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAATCGAACTGTTCAGATGTAGAGGTATTCCGGATCGCTGGCTCGCCTGTAGGGCAGCTTTATAGTAGATTGGTGCCGCTTGTACTACTGTTAGTGGATGGTAGCAACCCTATTGACGTCCTTGATCCTGGATGGGAAATTTATCTCCTAGTCCAGGCGGATAAGTTGCTTGGTTTTGCAGCTGTTTATCGTTTCTATCGTTATCCTGGCAGTACACGCATGCGACTTGGGCAGATACTGGTTATGCCTCCTTACCAACGTAAAGGTTATGGTCGTTTTCTTCTTGAGGTGTTGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACT</genome_strand>
        <mrna_strand>GACCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAATCGAACTGTTCAGATGTAGAGGTATTCCGGATCGCTGGCTCGCCTGTAGGGCAGCTTTATAGTAGATTGGTGCCGCTTGTACTACTGTTAGTGGATGGTAGCAACCCTATTGACGTCCTTGATCCTGGATGGGAAATTTATCTCCTAGTCCAGGCGGATAAGTTGCTTGGTTTTGCAGCTGTTTATCGTTTCTATCGTTATCCTGGCAGTACACGCATGCGACTTGGGCAGATACTGGTTATGCCTCCTTACC-ACGTAAAGGTTATGGTCGTTTTCTTCTTGAGGTGTTGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573678" ref_strand="+" ref_description="SGN-U573678 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147840664|emb|CAN62002.1| (e_value=8e-57) hypothetical; (*ATH) AT5G56740.1 (e_value=3e-55)  Symbol: None | histone acetyltransferase family protein, similar to histone acetyltransferase HAT B (Zea mays) GI:5579441; identical to cDNA histone acetyltransferase partial cds GI:21637256 | chr5:22970022-22972877 REVERSE | Aliases: MIK19.19, MIK1... ; (*SWP) sp|Q9FJT8|HATB_ARATH (e_value=2e-54) Histone acetyltransferase type B catalytic subunit OS=Arabidopsis thaliana GN=HAG2; ">
      <seq>acttcattaacaatagcaatagcaacaatataagattgcacataatggttttgttcaatgcntgcctcataccaaattgttataagatacacataacagtttgttcaagagagaatgcagaatgctgcctcatatcaaatagttataacaagtcacagacatatataattgaaagactaagctaatttaaccttacagagactcctttttttcatgtcgaaattttacttctgccttcatagcagctgcctttgtcgaagaaaccttttcagcaatcaacttgatctgtttcattcgttgatccaccagtttctgcagctgctcctccacaatactttgattgtcagccgtctctatgctactactagattgaccattccgcgatttgaacatcacaaatgacatctcctgatcgtgttcagttggtacatcaatcacttgcttccctgcaccctctgaatctttacctaaaacttcagcctttactcggtgagaaacaattgcttggtatatctccatatatttgtcaattggggccaaccgaagatagataagaatatcccaacattgcgtaaactgtttcttgttgattttcaaagttttcctcacatcttcaacagcactcagtggtggagcatacttgcacatgtagcttttttccaatagtttttcctgctttaaatgtgatacaactgattctagggattgctggactggatcaaatacaagcaaacgctcaacatcaatgcataatcgaacatgttgtagagaatcctcaggctcttcaatcgtcaagtcgtacacattttcagacactgcaaccctgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="69253" stop="67826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68953" g_stop="68126" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-U573678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68953" e_stop="68126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCATTAACAATAGCAATAGCAACAATATAAGATTGCACATAAT-GTTTTGTTCAATGC-TGCCTCATACCAAATTGTTATAAGATACACATAACAGTTTGTTCAAGAGAGAATGCAGAATGCTGCCTCATATCAAATAGTTATAACAAGTCACAGACATATATAATTGAAAGACTAAGCTAATTTAACCTTACAGAGACTCCTTTTTTTCATGTCGAAATTTTACTTCTGCCTTCATAGCAGCTGCCTTTGTCGAAGAAACCTTTTCAGCAATCAACTTGATCTGTTTCATTCGTTGATCCACCAGTTTCTGCAGCTGCTCCTCCACAATACTTTGATTGTCAGCCGTCTCTATGCTACTACTAGATTGACCATTCCGCGATTTGAACATCACAAATGACATCTCCTGATCGTGTTCAGTTGGTACATCAATCACTTGCTTCCCTGCACCCTCTGAATCTTTACCTAAAACTTCAGCCTTTACTCGGTGAGAAACAATTGCTTGGTATATCTCCATATATTTGTCAATTGGGGCCAACCGAAGATAGATAAGAATATCCCAACATTGCGTAAACTGTTTCTTGTTGATTTTCAAAGTTTTCCTCACATCTTCAACAGCACTCAGTGGTGGAGCATACTTGCACATGTAGCTTTTTTCCAATAGTTTTTCCTGCTTTAAATGTGATACAACTGATTCTAGGGATTGCTGGACTGGATCAAATACAAGCAAACGCTCAACATCAATGCATAATCGAACATGTTGTAGAGAATCCTCAGGCTCTTCAATCGTCAAGTCGTACACATTTTCAGACACTGCAACCCTGTTCA</genome_strand>
        <mrna_strand>ACTTCATTAACAATAGCAATAGCAACAATATAAGATTGCACATAATGGTTTTGTTCAATGCNTGCCTCATACCAAATTGTTATAAGATACACATAACAGTTTGTTCAAGAGAGAATGCAGAATGCTGCCTCATATCAAATAGTTATAACAAGTCACAGACATATATAATTGAAAGACTAAGCTAATTTAACCTTACAGAGACTCCTTTTTTTCATGTCGAAATTTTACTTCTGCCTTCATAGCAGCTGCCTTTGTCGAAGAAACCTTTTCAGCAATCAACTTGATCTGTTTCATTCGTTGATCCACCAGTTTCTGCAGCTGCTCCTCCACAATACTTTGATTGTCAGCCGTCTCTATGCTACTACTAGATTGACCATTCCGCGATTTGAACATCACAAATGACATCTCCTGATCGTGTTCAGTTGGTACATCAATCACTTGCTTCCCTGCACCCTCTGAATCTTTACCTAAAACTTCAGCCTTTACTCGGTGAGAAACAATTGCTTGGTATATCTCCATATATTTGTCAATTGGGGCCAACCGAAGATAGATAAGAATATCCCAACATTGCGTAAACTGTTTCTTGTTGATTTTCAAAGTTTTCCTCACATCTTCAACAGCACTCAGTGGTGGAGCATACTTGCACATGTAGCTTTTTTCCAATAGTTTTTCCTGCTTTAAATGTGATACAACTGATTCTAGGGATTGCTGGACTGGATCAAATACAAGCAAACGCTCAACATCAATGCATAATCGAACATGTTGTAGAGAATCCTCAGGCTCTTCAATCGTCAAGTCGTACACATTTTCAGACACTGCAACCCTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564641" ref_strand="+" ref_description="SGN-U564641 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147778418|emb|CAN60810.1| (e_value=1e-124) hypothetical; (*ATH) AT1G31120.1 (e_value=3e-107)  Symbol: None | potassium transporter family protein, similar to HAK2 (Hordeum vulgare) GI:7108599, potassium transporter (Arabidopsis thaliana) gi:2654088:gb:AAB87687; KUP/HAK/KT Transporter family member, PMID:11500563; contains Pfam profile PF0270... ; (*SWP) sp|Q7XLC6|HAK11_ORYSJ (e_value=2e-106) Probable potassium transporter 11 OS=Oryza sativa subsp. japonica GN=HAK11; ">
      <seq>gaactgtgaaacgttatgaatcggaaatgcatagcaaggtatcaatggcatggatacttggacttggccccagcttaggacttgtacgtgtccctgggataggacttgtctacactgagctagctagtggtgtgccacatatcttttctcacttcatcactaatctgccagcagtacattcagttgtagtatttgtctgcgtgaagtatcttccagtgtacactgttccagaagacgagaggttcctcatgaagcgcataggacccaagagttttcacatgttccgttgtgttgcgaggtatggttacaaggacctccataagaaagacgaggagtttgagaggaagctatttgataacctcttcctgtttgtccggctggagaatatgatggaaggttgctctgactccgatgaatacagcttatacgggcagcaaactcagcattcagcagattacctactgcgaagtaatggcaactcaactacaggaaataatgactacacatgttcgactgtggactcaataattcctgtaaagtctcctactcaagggcacaacaacacagtcacatcatcaggccgcgagagcagccaggcagaggcggatgaaatggaattcttaaatcgatgtagagatactggggttgtacacattcttggaaacactgtagttagagcaaggagggactctaaggtctacaaaaaaattgcctatcgactatatttacgccgtttcttaaggaaaatatgcagggaaaatagtgtaatcttcaatgtccctcatgagagcctagtaaatgttggacagatattctatgtataattttggtttcaacaaaatgaatgaactgatcatatcaaagaatattatccatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042O06-LZDxT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLe0042O06.2" temp_strand="-" temp_description="C02SLe0042O06.2  AC215455.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042O06 sequenced_by:kribb upload_account_name:korea">
        <position start="70173" stop="68698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69873" g_stop="68997" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="880" r_length="880" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042O06.2" gen_strand="-" ref_id="SGN-U564641" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042O06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69873" e_stop="68997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGTGAAACGTTATGAATTCGAAATGCATAGCAAGGTATCAATGGCATGGATTCTTGGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTACACATTCTTGGAAACACTGTAGTTAGAGCAAGGAGGGACTCTAGGTTCTACAAGAAAATTG-CTATCGACTATATTTACG-CGTTTCTT-AGGAAAATATGCAGGGAAAATAGTGTAATCTTCAATGTCCCTCATGAGAGCCTATTAAATGTTGGACAGATATTCTATGTATAATTTTGGTTTCAACAAAATGAATGAACTGATCATATCAAAGAATATTATCCATCTAT</genome_strand>
        <mrna_strand>GAACTGTGAAACGTTATGAATCGGAAATGCATAGCAAGGTATCAATGGCATGGATACTTGGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTACACATTCTTGGAAACACTGTAGTTAGAGCAAGGAGGGACTCTAAGGTCTACAAAAAAATTGCCTATCGACTATATTTACGCCGTTTCTTAAGGAAAATATGCAGGGAAAATAGTGTAATCTTCAATGTCCCTCATGAGAGCCTAGTAAATGTTGGACAGATATTCTATGTATAATTTTGGTTTCAACAAAATGAATGAACTGATCATATCAAAGAATATTATCCATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="15185" PGL_stop="15460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15185" e_stop="15460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15185" e_stop="15460" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15185" stop="15460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTGGAATCTATTTGCCGTGGAAGAACATTCCATGCACCATGTGAAATCTCGTTTTAGTTTCGATTTGATTTCATTAAGTAAAGTCCTGAAAATTTTTTCTCCAATTTATTTTATTTTTTTTCCATTTTCACGAGGGTTGTCTTTTCATACTGTGCTGTAAGCGAGAGTACTTTGTTTTATACTACTAAATGAGTTGTATTTTATAATAAAATGATGCAAATGTAATGAATGTATAATTTTCATTTTATGTAAGCTAAACTAACTGTCATGCCT</gDNA_template>
            <first_frame> N  L  E  S  I  C  R  G  R  T  F  H  A  P  C  E  I  S  F  *  F  R  F  D  F  I  K  *  S  P  E  N  F  F  S  N  L  F  Y  F  F  S  I  F  T  R  V  V  F  S  Y  C  A  V  S  E  S  T  L  F  Y  T  T  K  *  V  V  F  Y  N  K  M  M  Q  M  *  *  M  Y  N  F  H  F  M  *  A  K  L  T  V  M  P </first_frame>
            <second_frame>  T  W  N  L  F  A  V  E  E  H  S  M  H  H  V  K  S  R  F  S  F  D  L  I  S  L  S  K  V  L  K  I  F  S  P  I  Y  F  I  F  F  P  F  S  R  G  L  S  F  H  T  V  L  *  A  R  V  L  C  F  I  L  L  N  E  L  Y  F  I  I  K  *  C  K  C  N  E  C  I  I  F  I  L  C  K  L  N  *  L  S  C   </second_frame>
            <third_frame>   P  G  I  Y  L  P  W  K  N  I  P  C  T  M  *  N  L  V  L  V  S  I  *  F  H  *  V  K  S  *  K  F  F  L  Q  F  I  L  F  F  F  H  F  H  E  G  C  L  F  I  L  C  C  K  R  E  Y  F  V  L  Y  Y  *  M  S  C  I  L  *  *  N  D  A  N  V  M  N  V  *  F  S  F  Y  V  S  *  T  N  C  H  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0042O06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21118" PGL_stop="21616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21118" e_stop="21616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="21118" e_stop="21616" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21118" stop="21616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAACAGACTTTCTGGTCCATTGCCTTCATCCTTGAACAACTGCACACGATTGTGGAAAATAGACATGAATGAGAATGAGTTAGATGGAAATTTACCACCTTGGTTTGGTACACTTTCAAAGCTGATAGTCCTGAGTCTTCGGTCTAATAAATTCGATGGTGAACTAGCTCCAGAACTTTGCAAGCTCAATGATCTTCAAATCTTGGATCTTGCCAACAACAATTTGTTTGGAGCTATACCTCGGTGTGTTAACAATTTCACAGCAATGGTGAATGGAAGGAAGGAAATTAGAGACGGAGACGACGAGATGGATTATTCTTATTATGTTGGAGTTTTCAGGGAGAGTGCAAGAGTAGCAACTAAGGGTAACATGTATCAGTATGATACCATTTTGTCATTGTTTACAAGCATGGATCTTTCTAACAATAGCCTTTCTGGAAACATTCCTATGAGTCTTACAAGTCTTGTTGGATTGAGATCATTAAATTTCTCCCAC</gDNA_template>
            <first_frame> K  K  Q  T  F  W  S  I  A  F  I  L  E  Q  L  H  T  I  V  E  N  R  H  E  *  E  *  V  R  W  K  F  T  T  L  V  W  Y  T  F  K  A  D  S  P  E  S  S  V  *  *  I  R  W  *  T  S  S  R  T  L  Q  A  Q  *  S  S  N  L  G  S  C  Q  Q  Q  F  V  W  S  Y  T  S  V  C  *  Q  F  H  S  N  G  E  W  K  E  G  N  *  R  R  R  R  R  D  G  L  F  L  L  C  W  S  F  Q  G  E  C  K  S  S  N  *  G  *  H  V  S  V  *  Y  H  F  V  I  V  Y  K  H  G  S  F  *  Q  *  P  F  W  K  H  S  Y  E  S  Y  K  S  C  W  I  E  I  I  K  F  L  P  </first_frame>
            <second_frame>  R  N  R  L  S  G  P  L  P  S  S  L  N  N  C  T  R  L  W  K  I  D  M  N  E  N  E  L  D  G  N  L  P  P  W  F  G  T  L  S  K  L  I  V  L  S  L  R  S  N  K  F  D  G  E  L  A  P  E  L  C  K  L  N  D  L  Q  I  L  D  L  A  N  N  N  L  F  G  A  I  P  R  C  V  N  N  F  T  A  M  V  N  G  R  K  E  I  R  D  G  D  D  E  M  D  Y  S  Y  Y  V  G  V  F  R  E  S  A  R  V  A  T  K  G  N  M  Y  Q  Y  D  T  I  L  S  L  F  T  S  M  D  L  S  N  N  S  L  S  G  N  I  P  M  S  L  T  S  L  V  G  L  R  S  L  N  F  S  H </second_frame>
            <third_frame>   E  T  D  F  L  V  H  C  L  H  P  *  T  T  A  H  D  C  G  K  *  T  *  M  R  M  S  *  M  E  I  Y  H  L  G  L  V  H  F  Q  S  *  *  S  *  V  F  G  L  I  N  S  M  V  N  *  L  Q  N  F  A  S  S  M  I  F  K  S  W  I  L  P  T  T  I  C  L  E  L  Y  L  G  V  L  T  I  S  Q  Q  W  *  M  E  G  R  K  L  E  T  E  T  T  R  W  I  I  L  I  M  L  E  F  S  G  R  V  Q  E  *  Q  L  R  V  T  C  I  S  M  I  P  F  C  H  C  L  Q  A  W  I  F  L  T  I  A  F  L  E  T  F  L  *  V  L  Q  V  L  L  D  *  D  H  *  I  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21119" stop="21616"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNRLSGPLPSSLNNCTRLWKIDMNENELDGNLPPWFGTLSKLIVLSLRSNKFDGELAPELCKLNDLQILDLANNNLFGAIPRCVNNFTAMVNGRKEIRDGDDEMDYSYYVGVFRESARVATKGNMYQYDTILSLFTSMDLSNNSLSGNIPMSLTSLVGLRSLNFSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28805" PGL_stop="26959"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28805" e_stop="28772"/>
            <exon e_start="27773" e_stop="26959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.884" acc_prob="0.304" e_score="0.912"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="28805" e_stop="28772" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.884" acc_prob="0.304">
            <gDNA_intron_boundary i_start="28771" i_stop="27774" i_length="998"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="27773" e_stop="26959" e_length="815"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28805" stop="28772"/>
              <exon start="27773" stop="26959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACCAATTTGGAGCCCTAATTGTTAATTTTTAG : GAACAAAATTGAGTACTTGGATTGGGGGAACACATTTTACCTCAATGGTTATGGACCTTGTGCCGCCATCAGGTGATCATCACGAGAAAGAGGACTGTGGGCGGCATACTTGTGTACGAATTGAAAGTGCTAATGGAGAACTTCGTGGTACTGTCACTGCTTCGAAGAGTGTTTGCCTGGGAATAGAGAATGCAGGAACTAGTTGGAATGAAAGAACATCTAATGGCGCAAATGTACTGCCAAACACAGATTCTTTGGCTGTGAATTGCTATAGGAACTTGGAGCCTCATGATGGTATGGAATTTGACTCGAAAGAGAATGCCTTTTCACATTACAAAGAATATGCTAAGTCCATTGGATTTTCCTCAATAATAAAGGCTAGCCGTCGATCCAGAATTTCTGGAAAATTTATTGATGCAAAATTTGTTTGCAGTAGATATGGAAGTAAGCGTGAACCTTCTACTTCTGGCGCAGAACCTGTTCCAAGTACTGATGCAGCAGGAAGTAATCCCGTGAAAAGAAAAAAAGGCAGAATAAACAGGTCTTGGTCAAAAACAGATTGTAAGGCTTGCTTGCATGTAAAGAGAAGGTCTGATGGAAGGTGGGTTATTCATACTTTTGTCAAAGAGCATAACCATGAAATATTTCCGGATTGGACCAGTTATCCTCCAGGTCACAGGAACATTGATCTGGGTAAAAATGATGCAGATGCATTTCATGCTATCCGTGGGAGGACGAAAAAGACTTATGCCTCGACATCTAGGCATTCTGGTTTTGTGAAGAAAGTTGAGAAGCAAAAGAATGGTGGCACAAAT</gDNA_template>
            <first_frame> T  P  I  W  S  P  N  C  *  F  L   : G  T  K  L  S  T  W  I  G  G  T  H  F  T  S  M  V  M  D  L  V  P  P  S  G  D  H  H  E  K  E  D  C  G  R  H  T  C  V  R  I  E  S  A  N  G  E  L  R  G  T  V  T  A  S  K  S  V  C  L  G  I  E  N  A  G  T  S  W  N  E  R  T  S  N  G  A  N  V  L  P  N  T  D  S  L  A  V  N  C  Y  R  N  L  E  P  H  D  G  M  E  F  D  S  K  E  N  A  F  S  H  Y  K  E  Y  A  K  S  I  G  F  S  S  I  I  K  A  S  R  R  S  R  I  S  G  K  F  I  D  A  K  F  V  C  S  R  Y  G  S  K  R  E  P  S  T  S  G  A  E  P  V  P  S  T  D  A  A  G  S  N  P  V  K  R  K  K  G  R  I  N  R  S  W  S  K  T  D  C  K  A  C  L  H  V  K  R  R  S  D  G  R  W  V  I  H  T  F  V  K  E  H  N  H  E  I  F  P  D  W  T  S  Y  P  P  G  H  R  N  I  D  L  G  K  N  D  A  D  A  F  H  A  I  R  G  R  T  K  K  T  Y  A  S  T  S  R  H  S  G  F  V  K  K  V  E  K  Q  K  N  G  G  T  N </first_frame>
            <second_frame>  H  Q  F  G  A  L  I  V  N  F  *  :  E  Q  N  *  V  L  G  L  G  E  H  I  L  P  Q  W  L  W  T  L  C  R  H  Q  V  I  I  T  R  K  R  T  V  G  G  I  L  V  Y  E  L  K  V  L  M  E  N  F  V  V  L  S  L  L  R  R  V  F  A  W  E  *  R  M  Q  E  L  V  G  M  K  E  H  L  M  A  Q  M  Y  C  Q  T  Q  I  L  W  L  *  I  A  I  G  T  W  S  L  M  M  V  W  N  L  T  R  K  R  M  P  F  H  I  T  K  N  M  L  S  P  L  D  F  P  Q  *  *  R  L  A  V  D  P  E  F  L  E  N  L  L  M  Q  N  L  F  A  V  D  M  E  V  S  V  N  L  L  L  L  A  Q  N  L  F  Q  V  L  M  Q  Q  E  V  I  P  *  K  E  K  K  A  E  *  T  G  L  G  Q  K  Q  I  V  R  L  A  C  M  *  R  E  G  L  M  E  G  G  L  F  I  L  L  S  K  S  I  T  M  K  Y  F  R  I  G  P  V  I  L  Q  V  T  G  T  L  I  W  V  K  M  M  Q  M  H  F  M  L  S  V  G  G  R  K  R  L  M  P  R  H  L  G  I  L  V  L  *  R  K  L  R  S  K  R  M  V  A  Q   </second_frame>
            <third_frame>   T  N  L  E  P  *  L  L  I  F  R :   N  K  I  E  Y  L  D  W  G  N  T  F  Y  L  N  G  Y  G  P  C  A  A  I  R  *  S  S  R  E  R  G  L  W  A  A  Y  L  C  T  N  *  K  C  *  W  R  T  S  W  Y  C  H  C  F  E  E  C  L  P  G  N  R  E  C  R  N  *  L  E  *  K  N  I  *  W  R  K  C  T  A  K  H  R  F  F  G  C  E  L  L  *  E  L  G  A  S  *  W  Y  G  I  *  L  E  R  E  C  L  F  T  L  Q  R  I  C  *  V  H  W  I  F  L  N  N  K  G  *  P  S  I  Q  N  F  W  K  I  Y  *  C  K  I  C  L  Q  *  I  W  K  *  A  *  T  F  Y  F  W  R  R  T  C  S  K  Y  *  C  S  R  K  *  S  R  E  K  K  K  R  Q  N  K  Q  V  L  V  K  N  R  L  *  G  L  L  A  C  K  E  K  V  *  W  K  V  G  Y  S  Y  F  C  Q  R  A  *  P  *  N  I  S  G  L  D  Q  L  S  S  R  S  Q  E  H  *  S  G  *  K  *  C  R  C  I  S  C  Y  P  W  E  D  E  K  D  L  C  L  D  I  *  A  F  W  F  C  E  E  S  *  E  A  K  E  W  W  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28778" stop="28772"/>
                    <exon start="27773" stop="26959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLGTKLSTWIGGTHFTSMVMDLVPPSGDHHEKEDCGRHTCVRIESANGELRGTVTASKSVCLGIENAGTSWNERTSNGANVLPNTDSLAVNCYRNLEPHDGMEFDSKENAFSHYKEYAKSIGFSSIIKASRRSRISGKFIDAKFVCSRYGSKREPSTSGAEPVPSTDAAGSNPVKRKKGRINRSWSKTDCKACLHVKRRSDGRWVIHTFVKEHNHEIFPDWTSYPPGHRNIDLGKNDADAFHAIRGRTKKTYASTSRHSGFVKKVEKQKNGGTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37992" PGL_stop="37131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37992" e_stop="37131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="37992" e_stop="37131" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37992" stop="37131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCCTTCAACTAGAATATTTCCTCTAATGAAGAAAAGCTCTGGATTGTCTCCTTCACCCGAAGTGCTTCGATTGGTTGCATCCTGTGTTGCATCAGGTCCTCCTATTGCTACTAGTTCAAGTTTCCTTGGAAATATGGTCCCTCTACCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGTTGCACCAGGTCCTCCTATTGCTACTAGTCCAAGTTTCCTTGGAAATATGGTCCCTCTCCCCAAATCCGTTGATCAGGTTGCTTCTTCAGACACCCAAGATTCACATGAGAAGCAGGAAACAGATCAGACCTCAGCTCCTAGTACATTGGGTCCATTCCAGGCAGAGAAAAAAGTTGAAACTAATAGCAGGGATTCTAGCAAAACACAGTCAGATTCTGCTCGAGCCAGACAGGAAGAAGTAGAGGAAATATCATCTGAAGGGACAGTCTCTGATCATCAGGAGGATGACCGTGAACCATAGCTCTTCCTTATGGGGAGCTAATTGTTGTAATCATCTCTTGAAGTGTAACTAAAGCCTCTGACCCTCCATTGTTCTCAGTTTTTGTAGGGCAGGATGCAGTTAAAGTAGCAAATACAGTACAGGTTAGACAAGTTACTATGTAAAGCTTGTGTAAGAGAAAAGAAAAACATAGAAGTTAGCATATAATATTGTTCGTCGTCCTTAGAGTCGGAGGTGTTGACCTCGTAGGACTTGTTTAGTAGCTGGGTTCAGCATTTCATTTAGGACTTCCTAAGTGTCAGAACTATGGTTCATGTAAGCAAAACTTTGCTTGGATGTATTTTATGTACTTTGCAGCAATGTTCTGTTGTTAGCTGTTGTTT</gDNA_template>
            <first_frame> *  I  L  Q  L  E  Y  F  L  *  *  R  K  A  L  D  C  L  L  H  P  K  C  F  D  W  L  H  P  V  L  H  Q  V  L  L  L  L  L  V  Q  V  S  L  E  I  W  S  L  Y  P  N  P  L  I  R  L  L  L  Q  T  P  K  I  H  M  L  H  Q  V  L  L  L  L  L  V  Q  V  S  L  E  I  W  S  L  S  P  N  P  L  I  R  L  L  L  Q  T  P  K  I  H  M  R  S  R  K  Q  I  R  P  Q  L  L  V  H  W  V  H  S  R  Q  R  K  K  L  K  L  I  A  G  I  L  A  K  H  S  Q  I  L  L  E  P  D  R  K  K  *  R  K  Y  H  L  K  G  Q  S  L  I  I  R  R  M  T  V  N  H  S  S  S  L  W  G  A  N  C  C  N  H  L  L  K  C  N  *  S  L  *  P  S  I  V  L  S  F  C  R  A  G  C  S  *  S  S  K  Y  S  T  G  *  T  S  Y  Y  V  K  L  V  *  E  K  R  K  T  *  K  L  A  Y  N  I  V  R  R  P  *  S  R  R  C  *  P  R  R  T  C  L  V  A  G  F  S  I  S  F  R  T  S  *  V  S  E  L  W  F  M  *  A  K  L  C  L  D  V  F  Y  V  L  C  S  N  V  L  L  L  A  V  V  </first_frame>
            <second_frame>  E  S  F  N  *  N  I  S  S  N  E  E  K  L  W  I  V  S  F  T  R  S  A  S  I  G  C  I  L  C  C  I  R  S  S  Y  C  Y  *  F  K  F  P  W  K  Y  G  P  S  T  Q  I  R  *  S  G  C  F  F  R  H  P  R  F  T  C  C  T  R  S  S  Y  C  Y  *  S  K  F  P  W  K  Y  G  P  S  P  Q  I  R  *  S  G  C  F  F  R  H  P  R  F  T  *  E  A  G  N  R  S  D  L  S  S  *  Y  I  G  S  I  P  G  R  E  K  S  *  N  *  *  Q  G  F  *  Q  N  T  V  R  F  C  S  S  Q  T  G  R  S  R  G  N  I  I  *  R  D  S  L  *  S  S  G  G  *  P  *  T  I  A  L  P  Y  G  E  L  I  V  V  I  I  S  *  S  V  T  K  A  S  D  P  P  L  F  S  V  F  V  G  Q  D  A  V  K  V  A  N  T  V  Q  V  R  Q  V  T  M  *  S  L  C  K  R  K  E  K  H  R  S  *  H  I  I  L  F  V  V  L  R  V  G  G  V  D  L  V  G  L  V  *  *  L  G  S  A  F  H  L  G  L  P  K  C  Q  N  Y  G  S  C  K  Q  N  F  A  W  M  Y  F  M  Y  F  A  A  M  F  C  C  *  L  L  F </second_frame>
            <third_frame>   N  P  S  T  R  I  F  P  L  M  K  K  S  S  G  L  S  P  S  P  E  V  L  R  L  V  A  S  C  V  A  S  G  P  P  I  A  T  S  S  S  F  L  G  N  M  V  P  L  P  K  S  V  D  Q  V  A  S  S  D  T  Q  D  S  H  V  A  P  G  P  P  I  A  T  S  P  S  F  L  G  N  M  V  P  L  P  K  S  V  D  Q  V  A  S  S  D  T  Q  D  S  H  E  K  Q  E  T  D  Q  T  S  A  P  S  T  L  G  P  F  Q  A  E  K  K  V  E  T  N  S  R  D  S  S  K  T  Q  S  D  S  A  R  A  R  Q  E  E  V  E  E  I  S  S  E  G  T  V  S  D  H  Q  E  D  D  R  E  P  *  L  F  L  M  G  S  *  L  L  *  S  S  L  E  V  *  L  K  P  L  T  L  H  C  S  Q  F  L  *  G  R  M  Q  L  K  *  Q  I  Q  Y  R  L  D  K  L  L  C  K  A  C  V  R  E  K  K  N  I  E  V  S  I  *  Y  C  S  S  S  L  E  S  E  V  L  T  S  *  D  L  F  S  S  W  V  Q  H  F  I  *  D  F  L  S  V  R  T  M  V  H  V  S  K  T  L  L  G  C  I  L  C  T  L  Q  Q  C  S  V  V  S  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37990" stop="37493"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPSTRIFPLMKKSSGLSPSPEVLRLVASCVASGPPIATSSSFLGNMVPLPKSVDQVASSDTQDSHVAPGPPIATSPSFLGNMVPLPKSVDQVASSDTQDSHEKQETDQTSAPSTLGPFQAEKKVETNSRDSSKTQSDSARARQEEVEEISSEGTVSDHQEDDREP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37959" stop="37552"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKALDCLLHPKCFDWLHPVLHQVLLLLLVQVSLEIWSLYPNPLIRLLLQTPKIHMLHQVLLLLLVQVSLEIWSLSPNPLIRLLLQTPKIHMRSRKQIRPQLLVHWVHSRQRKKLKLIAGILAKHSQILLEPDRKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="38508" PGL_stop="38775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38508" e_stop="38775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="38508" e_stop="38775" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38508" stop="38775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGATTCACCACCTCCCGCATTGTTATGTGAATCATGTGAGATATTTAAAGACCTGTCAAGAAGGCTAGGTAAATTAACAAATCTGCTAGCACCATCATCAATCTCCTTTTGCAAGGCAAACCTGTTCTGACAACCCAAGCCAAGAGGACCCAAGCTACTGCTGCCCGACGAATTCAGCAGAAATGGTGACTCCGTAACAAAGCTTGATGGAGCTCCTAGTCTGTCTGATGGTCCCGCATTCAAATCTCGAGGAATGTTCACCCGGT</gDNA_template>
            <first_frame> L  D  S  P  P  P  A  L  L  C  E  S  C  E  I  F  K  D  L  S  R  R  L  G  K  L  T  N  L  L  A  P  S  S  I  S  F  C  K  A  N  L  F  *  Q  P  K  P  R  G  P  K  L  L  L  P  D  E  F  S  R  N  G  D  S  V  T  K  L  D  G  A  P  S  L  S  D  G  P  A  F  K  S  R  G  M  F  T  R  </first_frame>
            <second_frame>  *  I  H  H  L  P  H  C  Y  V  N  H  V  R  Y  L  K  T  C  Q  E  G  *  V  N  *  Q  I  C  *  H  H  H  Q  S  P  F  A  R  Q  T  C  S  D  N  P  S  Q  E  D  P  S  Y  C  C  P  T  N  S  A  E  M  V  T  P  *  Q  S  L  M  E  L  L  V  C  L  M  V  P  H  S  N  L  E  E  C  S  P  G </second_frame>
            <third_frame>   R  F  T  T  S  R  I  V  M  *  I  M  *  D  I  *  R  P  V  K  K  A  R  *  I  N  K  S  A  S  T  I  I  N  L  L  L  Q  G  K  P  V  L  T  T  Q  A  K  R  T  Q  A  T  A  A  R  R  I  Q  Q  K  W  *  L  R  N  K  A  *  W  S  S  *  S  V  *  W  S  R  I  Q  I  S  R  N  V  H  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0042O06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="67340" PGL_stop="68161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67340" e_stop="68161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67340" e_stop="68161" e_length="822"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67340" stop="68161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCTAACGAGCACAAATGGGGACGAAGCATCATTCCTCCTCCGATCCAATCAGCGAACCCAAAAAGCGCCGTCGCGTCGGATTCTCTAAGACCGATGCCGGAATTGAAGCTAACGACTGCATTACTATATACATTGTTTCTAGCGCAGAGGAAGTTGACTCCCCAAACAGTTTCTGTCTTGAACCAATTGACTTGAATCAATTTTTTGAAGACGATGGCAGAATATTTGGGTATCAGGGTCTCAAAATCACTATTTTGGTTAGCTTGATATCCTTTCATGCTTATGCTGATATTTCTTTCGAAAGCTCATCAGATGGTGGTAGAGGGATTACAAACGTAAAGTCTGCTCTTGAGAATATTTTTGGTGAGAGTCTTGTTGATGAAAAAGATGCCTTCCTGAAAACATTTTCAACTGAAAGTCAGTATGTTCGGTCTGTTGTCTCAAATGCTGAAACACTGCAGCATAAAGTTTCAAAAAATGGCTGTAGCACTGAATCGAACTGTTCAGATGTAGAGGTATTCCGGATCGCTGGCTCGCCTGTAGGGCAGCTTTATAGTAGATTGGTGCCGCTTGTACTACTGTTAGTGGATGGTAGCAACCCTATTGACGTCCTTGATCCTGGATGGGAAATTTATCTCCTAGTCCAGGCGGATAAGTTGCTTGGTTTTGCAGCTGTTTATCGTTTCTATCGTTATCCTGGCAGTACACGCATGCGACTTGGGCAGATACTGGTTATGCCTCCTTACCAACGTAAAGGTTATGGTCGTTTTCTTCTTGAGGTGTTGAACAGGGTTGCAGTGTCTGAAAATGTGTACGACT</gDNA_template>
            <first_frame> N  P  N  E  H  K  W  G  R  S  I  I  P  P  P  I  Q  S  A  N  P  K  S  A  V  A  S  D  S  L  R  P  M  P  E  L  K  L  T  T  A  L  L  Y  T  L  F  L  A  Q  R  K  L  T  P  Q  T  V  S  V  L  N  Q  L  T  *  I  N  F  L  K  T  M  A  E  Y  L  G  I  R  V  S  K  S  L  F  W  L  A  *  Y  P  F  M  L  M  L  I  F  L  S  K  A  H  Q  M  V  V  E  G  L  Q  T  *  S  L  L  L  R  I  F  L  V  R  V  L  L  M  K  K  M  P  S  *  K  H  F  Q  L  K  V  S  M  F  G  L  L  S  Q  M  L  K  H  C  S  I  K  F  Q  K  M  A  V  A  L  N  R  T  V  Q  M  *  R  Y  S  G  S  L  A  R  L  *  G  S  F  I  V  D  W  C  R  L  Y  Y  C  *  W  M  V  A  T  L  L  T  S  L  I  L  D  G  K  F  I  S  *  S  R  R  I  S  C  L  V  L  Q  L  F  I  V  S  I  V  I  L  A  V  H  A  C  D  L  G  R  Y  W  L  C  L  L  T  N  V  K  V  M  V  V  F  F  L  R  C  *  T  G  L  Q  C  L  K  M  C  T  T </first_frame>
            <second_frame>  T  L  T  S  T  N  G  D  E  A  S  F  L  L  R  S  N  Q  R  T  Q  K  A  P  S  R  R  I  L  *  D  R  C  R  N  *  S  *  R  L  H  Y  Y  I  H  C  F  *  R  R  G  S  *  L  P  K  Q  F  L  S  *  T  N  *  L  E  S  I  F  *  R  R  W  Q  N  I  W  V  S  G  S  Q  N  H  Y  F  G  *  L  D  I  L  S  C  L  C  *  Y  F  F  R  K  L  I  R  W  W  *  R  D  Y  K  R  K  V  C  S  *  E  Y  F  W  *  E  S  C  *  *  K  R  C  L  P  E  N  I  F  N  *  K  S  V  C  S  V  C  C  L  K  C  *  N  T  A  A  *  S  F  K  K  W  L  *  H  *  I  E  L  F  R  C  R  G  I  P  D  R  W  L  A  C  R  A  A  L  *  *  I  G  A  A  C  T  T  V  S  G  W  *  Q  P  Y  *  R  P  *  S  W  M  G  N  L  S  P  S  P  G  G  *  V  A  W  F  C  S  C  L  S  F  L  S  L  S  W  Q  Y  T  H  A  T  W  A  D  T  G  Y  A  S  L  P  T  *  R  L  W  S  F  S  S  *  G  V  E  Q  G  C  S  V  *  K  C  V  R   </second_frame>
            <third_frame>   P  *  R  A  Q  M  G  T  K  H  H  S  S  S  D  P  I  S  E  P  K  K  R  R  R  V  G  F  S  K  T  D  A  G  I  E  A  N  D  C  I  T  I  Y  I  V  S  S  A  E  E  V  D  S  P  N  S  F  C  L  E  P  I  D  L  N  Q  F  F  E  D  D  G  R  I  F  G  Y  Q  G  L  K  I  T  I  L  V  S  L  I  S  F  H  A  Y  A  D  I  S  F  E  S  S  S  D  G  G  R  G  I  T  N  V  K  S  A  L  E  N  I  F  G  E  S  L  V  D  E  K  D  A  F  L  K  T  F  S  T  E  S  Q  Y  V  R  S  V  V  S  N  A  E  T  L  Q  H  K  V  S  K  N  G  C  S  T  E  S  N  C  S  D  V  E  V  F  R  I  A  G  S  P  V  G  Q  L  Y  S  R  L  V  P  L  V  L  L  L  V  D  G  S  N  P  I  D  V  L  D  P  G  W  E  I  Y  L  L  V  Q  A  D  K  L  L  G  F  A  A  V  Y  R  F  Y  R  Y  P  G  S  T  R  M  R  L  G  Q  I  L  V  M  P  P  Y  Q  R  K  G  Y  G  R  F  L  L  E  V  L  N  R  V  A  V  S  E  N  V  Y  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67348" stop="68160"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQMGTKHHSSSDPISEPKKRRRVGFSKTDAGIEANDCITIYIVSSAEEVDSPNSFCLEPIDLNQFFEDDGRIFGYQGLKITILVSLISFHAYADISFESSSDGGRGITNVKSALENIFGESLVDEKDAFLKTFSTESQYVRSVVSNAETLQHKVSKNGCSTESNCSDVEVFRIAGSPVGQLYSRLVPLVLLLVDGSNPIDVLDPGWEIYLLVQADKLLGFAAVYRFYRYPGSTRMRLGQILVMPPYQRKGYGRFLLEVLNRVAVSENVYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="68953" PGL_stop="68126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68953" e_stop="68126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="68953" e_stop="68126" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68953" stop="68126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCATTAACAATAGCAATAGCAACAATATAAGATTGCACATAATGTTTTGTTCAATGCTGCCTCATACCAAATTGTTATAAGATACACATAACAGTTTGTTCAAGAGAGAATGCAGAATGCTGCCTCATATCAAATAGTTATAACAAGTCACAGACATATATAATTGAAAGACTAAGCTAATTTAACCTTACAGAGACTCCTTTTTTTCATGTCGAAATTTTACTTCTGCCTTCATAGCAGCTGCCTTTGTCGAAGAAACCTTTTCAGCAATCAACTTGATCTGTTTCATTCGTTGATCCACCAGTTTCTGCAGCTGCTCCTCCACAATACTTTGATTGTCAGCCGTCTCTATGCTACTACTAGATTGACCATTCCGCGATTTGAACATCACAAATGACATCTCCTGATCGTGTTCAGTTGGTACATCAATCACTTGCTTCCCTGCACCCTCTGAATCTTTACCTAAAACTTCAGCCTTTACTCGGTGAGAAACAATTGCTTGGTATATCTCCATATATTTGTCAATTGGGGCCAACCGAAGATAGATAAGAATATCCCAACATTGCGTAAACTGTTTCTTGTTGATTTTCAAAGTTTTCCTCACATCTTCAACAGCACTCAGTGGTGGAGCATACTTGCACATGTAGCTTTTTTCCAATAGTTTTTCCTGCTTTAAATGTGATACAACTGATTCTAGGGATTGCTGGACTGGATCAAATACAAGCAAACGCTCAACATCAATGCATAATCGAACATGTTGTAGAGAATCCTCAGGCTCTTCAATCGTCAAGTCGTACACATTTTCAGACACTGCAACCCTGTTCA</gDNA_template>
            <first_frame> T  S  L  T  I  A  I  A  T  I  *  D  C  T  *  C  F  V  Q  C  C  L  I  P  N  C  Y  K  I  H  I  T  V  C  S  R  E  N  A  E  C  C  L  I  S  N  S  Y  N  K  S  Q  T  Y  I  I  E  R  L  S  *  F  N  L  T  E  T  P  F  F  H  V  E  I  L  L  L  P  S  *  Q  L  P  L  S  K  K  P  F  Q  Q  S  T  *  S  V  S  F  V  D  P  P  V  S  A  A  A  P  P  Q  Y  F  D  C  Q  P  S  L  C  Y  Y  *  I  D  H  S  A  I  *  T  S  Q  M  T  S  P  D  R  V  Q  L  V  H  Q  S  L  A  S  L  H  P  L  N  L  Y  L  K  L  Q  P  L  L  G  E  K  Q  L  L  G  I  S  P  Y  I  C  Q  L  G  P  T  E  D  R  *  E  Y  P  N  I  A  *  T  V  S  C  *  F  S  K  F  S  S  H  L  Q  Q  H  S  V  V  E  H  T  C  T  C  S  F  F  P  I  V  F  P  A  L  N  V  I  Q  L  I  L  G  I  A  G  L  D  Q  I  Q  A  N  A  Q  H  Q  C  I  I  E  H  V  V  E  N  P  Q  A  L  Q  S  S  S  R  T  H  F  Q  T  L  Q  P  C  S </first_frame>
            <second_frame>  L  H  *  Q  *  Q  *  Q  Q  Y  K  I  A  H  N  V  L  F  N  A  A  S  Y  Q  I  V  I  R  Y  T  *  Q  F  V  Q  E  R  M  Q  N  A  A  S  Y  Q  I  V  I  T  S  H  R  H  I  *  L  K  D  *  A  N  L  T  L  Q  R  L  L  F  F  M  S  K  F  Y  F  C  L  H  S  S  C  L  C  R  R  N  L  F  S  N  Q  L  D  L  F  H  S  L  I  H  Q  F  L  Q  L  L  L  H  N  T  L  I  V  S  R  L  Y  A  T  T  R  L  T  I  P  R  F  E  H  H  K  *  H  L  L  I  V  F  S  W  Y  I  N  H  L  L  P  C  T  L  *  I  F  T  *  N  F  S  L  Y  S  V  R  N  N  C  L  V  Y  L  H  I  F  V  N  W  G  Q  P  K  I  D  K  N  I  P  T  L  R  K  L  F  L  V  D  F  Q  S  F  P  H  I  F  N  S  T  Q  W  W  S  I  L  A  H  V  A  F  F  Q  *  F  F  L  L  *  M  *  Y  N  *  F  *  G  L  L  D  W  I  K  Y  K  Q  T  L  N  I  N  A  *  S  N  M  L  *  R  I  L  R  L  F  N  R  Q  V  V  H  I  F  R  H  C  N  P  V   </second_frame>
            <third_frame>   F  I  N  N  S  N  S  N  N  I  R  L  H  I  M  F  C  S  M  L  P  H  T  K  L  L  *  D  T  H  N  S  L  F  K  R  E  C  R  M  L  P  H  I  K  *  L  *  Q  V  T  D  I  Y  N  *  K  T  K  L  I  *  P  Y  R  D  S  F  F  S  C  R  N  F  T  S  A  F  I  A  A  A  F  V  E  E  T  F  S  A  I  N  L  I  C  F  I  R  *  S  T  S  F  C  S  C  S  S  T  I  L  *  L  S  A  V  S  M  L  L  L  D  *  P  F  R  D  L  N  I  T  N  D  I  S  *  S  C  S  V  G  T  S  I  T  C  F  P  A  P  S  E  S  L  P  K  T  S  A  F  T  R  *  E  T  I  A  W  Y  I  S  I  Y  L  S  I  G  A  N  R  R  *  I  R  I  S  Q  H  C  V  N  C  F  L  L  I  F  K  V  F  L  T  S  S  T  A  L  S  G  G  A  Y  L  H  M  *  L  F  S  N  S  F  S  C  F  K  C  D  T  T  D  S  R  D  C  W  T  G  S  N  T  S  K  R  S  T  S  M  H  N  R  T  C  C  R  E  S  S  G  S  S  I  V  K  S  Y  T  F  S  D  T  A  T  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68365" stop="68126"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKFSSHLQQHSVVEHTCTCSFFPIVFPALNVIQLILGIAGLDQIQANAQHQCIIEHVVENPQALQSSSRTHFQTLQPCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68775" stop="68554"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANLTLQRLLFFMSKFYFCLHSSCLCRRNLFSNQLDLFHSLIHQFLQLLLHNTLIVSRLYATTRLTIPRFEHHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68484" stop="68290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSLYSVRNNCLVYLHIFVNWGQPKIDKNIPTLRKLFLVDFQSFPHIFNSTQWWSILAHVAFFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="69873" PGL_stop="68997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69873" e_stop="68997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="69873" e_stop="68997" e_length="877"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69873" stop="68997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTGTGAAACGTTATGAATTCGAAATGCATAGCAAGGTATCAATGGCATGGATTCTTGGACTTGGCCCCAGCTTAGGACTTGTACGTGTCCCTGGGATAGGACTTGTCTACACTGAGCTAGCTAGTGGTGTGCCACATATCTTTTCTCACTTCATCACTAATCTGCCAGCAGTACATTCAGTTGTAGTATTTGTCTGCGTGAAGTATCTTCCAGTGTACACTGTTCCAGAAGACGAGAGGTTCCTCATGAAGCGCATAGGACCCAAGAGTTTTCACATGTTCCGTTGTGTTGCGAGGTATGGTTACAAGGACCTCCATAAGAAAGACGAGGAGTTTGAGAGGAAGCTATTTGATAACCTCTTCCTGTTTGTCCGGCTGGAGAATATGATGGAAGGTTGCTCTGACTCCGATGAATACAGCTTATACGGGCAGCAAACTCAGCATTCAGCAGATTACCTACTGCGAAGTAATGGCAACTCAACTACAGGAAATAATGACTACACATGTTCGACTGTGGACTCAATAATTCCTGTAAAGTCTCCTACTCAAGGGCACAACAACACAGTCACATCATCAGGCCGCGAGAGCAGCCAGGCAGAGGCGGATGAAATGGAATTCTTAAATCGATGTAGAGATACTGGGGTTGTACACATTCTTGGAAACACTGTAGTTAGAGCAAGGAGGGACTCTAGGTTCTACAAGAAAATTGCTATCGACTATATTTACGCGTTTCTTAGGAAAATATGCAGGGAAAATAGTGTAATCTTCAATGTCCCTCATGAGAGCCTATTAAATGTTGGACAGATATTCTATGTATAATTTTGGTTTCAACAAAATGAATGAACTGATCATATCAAAGAATATTATCCATCTAT</gDNA_template>
            <first_frame> E  L  *  N  V  M  N  S  K  C  I  A  R  Y  Q  W  H  G  F  L  D  L  A  P  A  *  D  L  Y  V  S  L  G  *  D  L  S  T  L  S  *  L  V  V  C  H  I  S  F  L  T  S  S  L  I  C  Q  Q  Y  I  Q  L  *  Y  L  S  A  *  S  I  F  Q  C  T  L  F  Q  K  T  R  G  S  S  *  S  A  *  D  P  R  V  F  T  C  S  V  V  L  R  G  M  V  T  R  T  S  I  R  K  T  R  S  L  R  G  S  Y  L  I  T  S  S  C  L  S  G  W  R  I  *  W  K  V  A  L  T  P  M  N  T  A  Y  T  G  S  K  L  S  I  Q  Q  I  T  Y  C  E  V  M  A  T  Q  L  Q  E  I  M  T  T  H  V  R  L  W  T  Q  *  F  L  *  S  L  L  L  K  G  T  T  T  Q  S  H  H  Q  A  A  R  A  A  R  Q  R  R  M  K  W  N  S  *  I  D  V  E  I  L  G  L  Y  T  F  L  E  T  L  *  L  E  Q  G  G  T  L  G  S  T  R  K  L  L  S  T  I  F  T  R  F  L  G  K  Y  A  G  K  I  V  *  S  S  M  S  L  M  R  A  Y  *  M  L  D  R  Y  S  M  Y  N  F  G  F  N  K  M  N  E  L  I  I  S  K  N  I  I  H  L  </first_frame>
            <second_frame>  N  C  E  T  L  *  I  R  N  A  *  Q  G  I  N  G  M  D  S  W  T  W  P  Q  L  R  T  C  T  C  P  W  D  R  T  C  L  H  *  A  S  *  W  C  A  T  Y  L  F  S  L  H  H  *  S  A  S  S  T  F  S  C  S  I  C  L  R  E  V  S  S  S  V  H  C  S  R  R  R  E  V  P  H  E  A  H  R  T  Q  E  F  S  H  V  P  L  C  C  E  V  W  L  Q  G  P  P  *  E  R  R  G  V  *  E  E  A  I  *  *  P  L  P  V  C  P  A  G  E  Y  D  G  R  L  L  *  L  R  *  I  Q  L  I  R  A  A  N  S  A  F  S  R  L  P  T  A  K  *  W  Q  L  N  Y  R  K  *  *  L  H  M  F  D  C  G  L  N  N  S  C  K  V  S  Y  S  R  A  Q  Q  H  S  H  I  I  R  P  R  E  Q  P  G  R  G  G  *  N  G  I  L  K  S  M  *  R  Y  W  G  C  T  H  S  W  K  H  C  S  *  S  K  E  G  L  *  V  L  Q  E  N  C  Y  R  L  Y  L  R  V  S  *  E  N  M  Q  G  K  *  C  N  L  Q  C  P  S  *  E  P  I  K  C  W  T  D  I  L  C  I  I  L  V  S  T  K  *  M  N  *  S  Y  Q  R  I  L  S  I  Y </second_frame>
            <third_frame>   T  V  K  R  Y  E  F  E  M  H  S  K  V  S  M  A  W  I  L  G  L  G  P  S  L  G  L  V  R  V  P  G  I  G  L  V  Y  T  E  L  A  S  G  V  P  H  I  F  S  H  F  I  T  N  L  P  A  V  H  S  V  V  V  F  V  C  V  K  Y  L  P  V  Y  T  V  P  E  D  E  R  F  L  M  K  R  I  G  P  K  S  F  H  M  F  R  C  V  A  R  Y  G  Y  K  D  L  H  K  K  D  E  E  F  E  R  K  L  F  D  N  L  F  L  F  V  R  L  E  N  M  M  E  G  C  S  D  S  D  E  Y  S  L  Y  G  Q  Q  T  Q  H  S  A  D  Y  L  L  R  S  N  G  N  S  T  T  G  N  N  D  Y  T  C  S  T  V  D  S  I  I  P  V  K  S  P  T  Q  G  H  N  N  T  V  T  S  S  G  R  E  S  S  Q  A  E  A  D  E  M  E  F  L  N  R  C  R  D  T  G  V  V  H  I  L  G  N  T  V  V  R  A  R  R  D  S  R  F  Y  K  K  I  A  I  D  Y  I  Y  A  F  L  R  K  I  C  R  E  N  S  V  I  F  N  V  P  H  E  S  L  L  N  V  G  Q  I  F  Y  V  *  F  W  F  Q  Q  N  E  *  T  D  H  I  K  E  Y  Y  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042O06.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69871" stop="69053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAVHSVVVFVCVKYLPVYTVPEDERFLMKRIGPKSFHMFRCVARYGYKDLHKKDEEFERKLFDNLFLFVRLENMMEGCSDSDEYSLYGQQTQHSADYLLRSNGNSTTGNNDYTCSTVDSIIPVKSPTQGHNNTVTSSGRESSQAEADEMEFLNRCRDTGVVHILGNTVVRARRDSRFYKKIAIDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 16560 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2070 bytes was the average size of a spliced alignment
$ 13792 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1724 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:51:43
-->
