<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:57:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1096" ref_strand="+" ref_description="T1096">
      <seq>ggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="27300" stop="24086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27000" g_stop="26931" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26658" g_stop="26584" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="145" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25914" g_stop="25694" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="366" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24661" g_stop="24386" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="642" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="T1096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="T1096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27000" e_stop="26931"/>
          <exon e_start="26658" e_stop="26584"/>
          <exon e_start="25914" e_stop="25694"/>
          <exon e_start="24661" e_stop="24386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTAC</genome_strand>
        <mrna_strand>GGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g14250" ref_strand="+" ref_description="C2_At5g14250">
      <seq>ctcgagttttttttttttttttttatttttgttagagacccagtggaagcctctgcccttagacgtgaatctgctcgtactgtgtgttgattgatccgttgggcaaaagagaagagatgaatctgaacatgaattcgatggaatcagtggttgctcaaatccaagggctatcaagcaattcatcagacataactcagcttcacaactttctcaaacaatcggaagagctactccattccgacttctctcgcttgctttcttctctcgctgaactcgatccttctattcactccctcggctttctctatattctggaggcatgcatctcattcccagttgcaaaggagcatgttagtgaactgcttgtttctgtcgctagatttatcaattcatgttctgcagagcaaatccagttggcgcccaataagttcatttctgtttgtaaaaagtttaaggatcatattttcggactggaaactccaattcgtggtgtagctccaatgctgactgctattcgtaaactgcaatcctcctctgagcaattaacaacattgcatgccgattttcttcttctttgtatattggcaaagtgctataaaactggcatctctgtgctggaggatgacatatatgagattgatcagccacgggacttttttctctattgttactacgggggaatggtttgcattggacaaaaacagttccgcagagcattggaactcttgcacaatngttgtgacggcacctatgtctactctaaatgcantagcagttgaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="99849" stop="33373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35672" g_stop="35369" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.816"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34755" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="429" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92">
            <donor d_prob="0.587" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34662" g_stop="34416" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="676" r_length="247" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509">
            <donor d_prob="0.771" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33906" g_stop="33849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="734" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33673" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="784" r_length="50" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="C2_At5g14250" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g14250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35672" e_stop="35369"/>
          <exon e_start="34870" e_stop="34755"/>
          <exon e_start="34662" e_stop="34416"/>
          <exon e_start="33906" e_stop="33849"/>
          <exon e_start="33721" e_stop="33673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTCCCAATTATTTCTTTTTATTTATTACCCAGT-CCAGTTGAAGCCTCGTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTG--TG-TTGATTGGGC----GAG-AGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCTGTAAGTTCCTTTTCATCCTCATCTCTTATTCTTATAACCTAAACCTAGGGTTTCTATTCTGAAGATTATTATTTGTTTAAATTAGCCATTGTTAGGTTATATATATAGATATATTGATTAAAACACCCTGGGCTGTGGCTTAGTCATCGTGGGCTATGGACGATGAGGTTTCATGTTAAAATCCCAATGCAGGTGTTTTTTTCCCATCTGCCCTAACTTTGTTGGACACCTGGTATTGGTACGCGTGGAATTAGCTTGGTGGACACCACGGTGATTATGAAAAAAGAAAAGCTAATTGACAAAGAGGATTGTTATGGTCAACACCAATACATGTAGGATTGAGGCATAGTTGATTGATTGATTACATAATCTATAAAAATAATGCAGAATTGAACCATCCACTGAATTAAAGACCAGTATTTGTGTAACAAGTGCGCGTTGTCTTTTGTACTCTGTCTAGTGTGTATTAATCATATAATTGTGTTTGTTAACTAACAGGGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGTGTAATTTTCTCTGGTTTCTGGAATAGCTTTTGTGAATATTCTTGTTTCTGGTCTAACTTATATTGAGGCACGTCTTCAATTTGTGGTTGCAGTCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGGGTTAGTTGTTTCAGACTTTCTGCTTAGAAGTTATTTCAGTTGTGTTGGTGTCGTTCCCTTGTTCCGTTCCTTGTTTAAATTTCTCTGTGACTTTTAAAAAAAAAAATTGGAATATTTTTTATGGCAATTCATTAAATCATGCTTTCCTATCAGTGTGTTTTCTAATTTTTATAGGAAAGAGGAACTTTACTCGCCTATGAATATTTGTATTTGCTTGTATAGTTATCTGGTGAAAGAATTAATTTTGTTCAAAAACCCATGGTATTGGTATACAATTATCTACGTCTGCCTTTCTTACCTTTGATATTGTTTAGTTCTCCAACCTAAAGACAAAGTTCTTAACAGCAATGTGAATCACAAGTGATGTATCAATTTAGAATGAGATTGAGTAATTCAATATTTTCTTAATTAAAAAAGTCACTGATATAATCTTTCTATCGCTTTCTGGATTTTTCTGGATTTGTGTCTTATACTTGTTGACATGTCTTATAATTTGAACATAATAACAGGGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAATGTATGTTACTGTGTTCTCATTCCATGTTTCCTTTATTGGTATTTGGTTTTGTTATTCCCTATTTGCAAGTTACTATATATTATCTATATCTGTCCGTTTGTGCTGATTCTATCTGTTATGCTTCTAG-GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTT</genome_strand>
        <mrna_strand>CTCGAGTTTTTTTTTTTTTTTTTTATTTTTGTTAGAGACCCAGTGGAAGCCTCTGCCCTTAGACGTGAATCTGCTCGTACTGTGTGTTGATTGATCCGTTGGGCAAAAGAGAAGAGATGAATCTGAACATGAATTCGATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCAAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTCGGCTTTCTCTATATTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTGCAGAGCAAATCCAGTTGGCGCCCAATAAGT............................................................................................TCATTTCTGTTTGTAAAAAGTTTAAGGATCATATTTTCGGACTGGAAACTCCAATTCGTGGTGTAGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCTCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTATATTGGCAAAGTGCTATAAAACTGGCATCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGACTTTTTTCTCTATTGTTACTACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATGGTTTGCATTGGACAAAAACAGTTCCGCAGAGCATTGGAACTCTTGCACAAT...............................................................................................................................NGTTGTGACGGCACCTATGTCTACTCTAAATGCANTAGCAGTTGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG507-R" ref_strand="+" ref_description="TG507-R">
      <seq>ggagacagcttgcatgcctgcagctgtgatcattacagcagagaaaccttggtcatcttggctatccagatcaatctctcctcgtccaaccagcgccttcagggacaaaaggtccctggatcgagccacaaacagtaatggtgaaaagacagatgcgttgcttgacttgggaacctttccgctctggatgacttccagaacagcaccctgaaaactgagtttccatcgattggacacagcaatggagattgcagattcaccagctacattaaccaaaccaaaatcagcacctgctctagtcaatactttgaggcattcttccctcttgaatcttgcagagatcattaaagctgtatctcctgtgtccgttcttgcatccagatcacagccaaattcaatcaaacatttaagaacgcttgagaacccaagtcgggctgccatgtgtataggacgaaactcaatgttccgggtggttataactggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="+" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="51027" stop="52103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51336" g_stop="51803" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="485" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="+" ref_id="TG507-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="+"/>
        <rDNA rDNA_id="TG507-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51336" e_stop="51803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGCTGTGATCATTACAGCAGAGAAACCTTGGTCATCTTGGCTATCCAGATCAATCTCTCCTCGTCCAACCAGCGCCTTCAGGGACAAAAGGTCCCTGGATCGAGCCACAAACAGTAATGGTGAAAAGACAGATGCGTTGCTTGACTTGGGAACCTTTCCGCTCTGGATGACTTCCAGAACAGCACCCTGAAAACTGAGTTTCCATCGATTGGACACAGCAATGGAGATTGCAGATTCACCAGCTACATTAACCAAACCAAAATCAGCACCTGCTCTAGTCAATACTTTGAGGCATTCTTCCCTCTTGAATCTTGCAGAGATCATTAAAGCTGTATCTCCTGTGTCCGTTCTTGCATCCAGATCACAGCCAAATTCAATCAAACATTTAAGAACGCTTGAGAACCCAAGTCGGGCTGCCATGTGTATAGGACGAAACTCAATGTTCCGGGTGGTTATAACTGGAG</genome_strand>
        <mrna_strand>CTGCAGCTGTGATCATTACAGCAGAGAAACCTTGGTCATCTTGGCTATCCAGATCAATCTCTCCTCGTCCAACCAGCGCCTTCAGGGACAAAAGGTCCCTGGATCGAGCCACAAACAGTAATGGTGAAAAGACAGATGCGTTGCTTGACTTGGGAACCTTTCCGCTCTGGATGACTTCCAGAACAGCACCCTGAAAACTGAGTTTCCATCGATTGGACACAGCAATGGAGATTGCAGATTCACCAGCTACATTAACCAAACCAAAATCAGCACCTGCTCTAGTCAATACTTTGAGGCATTCTTCCCTCTTGAATCTTGCAGAGATCATTAAAGCTGTATCTCCTGTGTCCGTTCTTGCATCCAGATCACAGCCAAATTCAATCAAACATTTAAGAACGCTTGAGAACCCAAGTCGGGCTGCCATGTGTATAGGACGAAACTCAATGTTCCGGGTGGTTATAACTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g14230" ref_strand="+" ref_description="C2_At5g14230">
      <seq>cttcgtcggaaaatgatagtgttcggccattctggtgccggagttggtttcctcgccggcaaacaggtctttccggtgaactacgaggctgaagtttcccgtcgtcttcttgaagcgtcgcattcaaacgatctgacattaactcttgaatgtatcgccgatccgttcgtagacgttaatttcgtcggcgatgtgtgtttaaaggttcgaaaggcagaggtcgtgactcatgacgagttgccgaacgaagttaggataatttacgaggagttcaaaaccgacgttacggctttgttcctcgccgctcataatggaaatgttgctcttgtgagaaaactactgagcactggagccgatgtaaaccataaacttttcaggggattcccaaccacgtcagctgtgagggagggacaccttgagatcttggagatgttagttaaagctgggtcatctcagcaggcttgtgaggaagctctgttggaggccagctgtcatgggcatgcaagaattgtggaggtgctcatgggatcagacctgattcgacctcgtattgctatacatgctttcttcactgcatgctgccggggatatgtaaatgtggtggacactcttcttaagcttggagtgaccgtggatgctacaaatcgtgtgctgctccaatcaagtaaaccttctctgcatacaaatgttgactgcacagcacttgtggctgctattgtcagtaggcaagtctctgtagttcgtctgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="55280" stop="51986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54980" g_stop="54638" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54637" i_stop="53083" i_length="1555">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53082" g_stop="52807" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="618" r_length="276" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52806" i_stop="52421" i_length="386">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52420" g_stop="52286" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="753" r_length="135" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="C2_At5g14230" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g14230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54980" e_stop="54638"/>
          <exon e_start="53082" e_stop="52807"/>
          <exon e_start="52420" e_stop="52286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCGTCGGAAAATGACAGTGTTTGCCCATTCTGGTGGCGGAGGTGGTTTCCTCGCCGGGAAACAGGTCTTTCCGGTGAACTACGAGGCTGAAGTTTCCCGTCGTCTTCTTGAAGCGTCGCATACAAACGATCTGACATTAGCTCTTGAGTGTATCGCCGATCCGTTTGTGGACGTTAATTTCGTCGGCGATGTGTGTTTAAAGGTTCGAAAAGCAGAGGTCGTGACTCATGACGAGTTGCCGAACGAAGTTAGGATCATTTACGAGGAGTTCAAAACCGACGTTACGGCTTTGTTCCTCGCCGCTCATAATGGAAATGTTGCTCTAGTGAGAAAACTACTGGTAACAATTTTCCTCAACTTTGCTTTTCCAATTAGTACTAGTAATAATTTTTTTTTATCGTTCCAGTGTTTTGTCTACTTGATTTGAATTGATTTTGATGTTTTCTTCACGCAAGAGAAAGCTTGTGCTTTTGGATCATTGACTATTAGTTCGTGTAGCATCTTTGTATTCAGCTGGAAATTCTCCATTAAATTAAACGCAGCGCTTTGGTTATGACTTATGAGTCCTTTGATTAGCTATTATGATGATATGCACTAATTAATGCTCCGGTGAAAATTCAAAGTTTGTTGAGCCTTTAACTTTGACGTTTTGCATCGTCTGTCTGTTATAAGAATTTTGAATTTTGAATTTTGCTGGATAAGACCTAAATCTTTCCGGTTCCGCTCATTGTGTCGTTATCGTACTGTAAAAGCCGCTGAAAACGCTCGCACTTAATGTCGACTTTTCCTCCTTGTACAATTTTCTTTTGTTATTTCTGCATTTGGTCCTAGTCTTTTTATTCTTTTATACTTTTGACCGTCGTCTGTTTCTATCGTCATCCTTGTTTGAATTTTTTACCTATCAAGAAAAAAGTAACCTATTTTACTAGTTTTTATTTATTTTTTTAAAAATGTCACCTATTTTCTCTGTACTTGATTCACCCATCTAACGTTATTTTCAGCTATTGTTCCCAATTAAGAAAAATGTCACTTTCTCCCCCATACTTGTTTTACCTATTGTCACTGCAACTTGTGTTTTAAAATTGACTATTTTTCGGTTAGCAAACCGCCGTATAGGTGTTATTTTACGAAAATTAGGAGGAAAAAAATCTTACTCTAGTTTTTCCCTACAAAGAAACTTTGCTTTTACGATGGGGCATTTGTTAAAGGTCTGTGTTGTTGTCCATATTTTGAAGTAAATTTTTAATCTTTGTCAACCTTTTTGTTGCATTAGAGCATGGCAGATCAAATTAGACAATAGGATGAGAAGGCCTTTGCTGAAGTCATTTGAAAATTGAAATGTCCAGTATGGTTTCTTCTGAAAAAACATGAACAGTATGCGTTGCTGGATTATAAATCTATAACAATGGTAATTCACAATAGATCTTAAATGTGAAAATTTTAAAACACCTTATTAGTGAATGTTTTCAAAAGAAATTTTTTAATCATATTTGTCCGGTGGATTAGGGAGAATGTTGGAATAAGTATAACTATTCAGCTGCTTATTCACTGGCAGAAATAGGTCCGTACACAGTTACACTGTTTTTCCACTGGCATATTTTCAATTCACGGTTATAAAGTGTGCAAGCTACTAATCCTAAAACCAAACAACATAGAGTTTATCCTCTGTAACATCTATGGTCAGCTCCAGGCACAACTGACCGATTGCAGATCATATATCTGTTGGTTTGTATCTTCTTTGTCTTTTTAGTTCTTGGTTTTTCCTGCAGAATAAAATTCCTTGTGGACTCTGAGGATTCTGTGGTTCTTGCTTTCTTCTTTATCTCATTAAATGAAACTATGCATTTTGAGTAACTTATAGAGTAATATAGTTGCATTTTTTAAAAAAATTGCAGAGCACTGGAGCCGATGTAAACCATAAACTTTTCAGGGGATTCCCAACCACGTCTGCTGTGAGGGAGGGACACCTTGAGATCTTGGAGATGTTAGTTAAAGCTGGGTCATCTCAGCAGGCTTGTGAGGAAGCTCTGTTGGAGGCCAGCTGTCATGGGCATGCAAGAATTGTGGAGGTGCTCATGGAATCGGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTCCTTAAGGTGAAAAATTAAGCTAGCCATTTAAGATACTATTTCTCTGCAGGATATCACTGCTAACTTTAGCTCAGCTGTTTCCAACAAAAATTAAACCTATAAAACAATTACGGTTAGAGAAAAGCTAGAGTCACATTTACATTACTCTCCTTACTCCTTTTATGCAATTTTGCCTTTAATTTGCAAATTCAAGTGGGTTCTTTTATTTTTTGCTGCTCGATATACCTATAGGTGGGAACAATATTGATTTATACATACTCTTTTTAGCGTTTGCCATTTTACTTTGCCTTTATTGCTCGTTGTGTGTTTATCTTGTATCCTTTTTGGAGCAACCATGGCCAAAGTGTGAATTTTTATTTACATCTTGATAATCGCTGCTTTCTTGGTGGCAGCTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTTGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTT</genome_strand>
        <mrna_strand>CTT-CGTCGGAAAATGATAGTGTTCGGCCATTCTGGTGCCGGAGTTGGTTTCCTCGCCGGCAAACAGGTCTTTCCGGTGAACTACGAGGCTGAAGTTTCCCGTCGTCTTCTTGAAGCGTCGCATTCAAACGATCTGACATTAACTCTTGAATGTATCGCCGATCCGTTCGTAGACGTTAATTTCGTCGGCGATGTGTGTTTAAAGGTTCGAAAGGCAGAGGTCGTGACTCATGACGAGTTGCCGAACGAAGTTAGGATAATTTACGAGGAGTTCAAAACCGACGTTACGGCTTTGTTCCTCGCCGCTCATAATGGAAATGTTGCTCTTGTGAGAAAACTACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTGGAGCCGATGTAAACCATAAACTTTTCAGGGGATTCCCAACCACGTCAGCTGTGAGGGAGGGACACCTTGAGATCTTGGAGATGTTAGTTAAAGCTGGGTCATCTCAGCAGGCTTGTGAGGAAGCTCTGTTGGAGGCCAGCTGTCATGGGCATGCAAGAATTGTGGAGGTGCTCATGGGATCAGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTTCTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGTGACCGTGGATGCTACAAATCGTGTGCTGCTCCAATCAAGTAAACCTTCTCTGCATACAAATGTTGACTGCACAGCACTTGTGGCTGCTATTGTCAGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG507-F" ref_strand="+" ref_description="TG507-F">
      <seq>atatcactgctaactttagctcagctgtttccaacaaaaattaaacctataaaacaattacggttagagaaaagctagagtcacatttacattactctccttactccttttatgcaattttgcctttaatttgcaaattcaagtgggttcttttattttttgctgctcgatatacctataggtgggaacaatattgatttatacatactctttttagcgtttgccattttactttgcctttattgctcgttgtgtgtttatcttgtatcctttttggagcaaccatggccaaagtgtgaatttttatttacatcttgataatcgctgctttcttggtggcagcttggagtgactgtgaatgctacaaatcgtgtgttgctccagtcaagtaaaccttctctgcatacaaatgtggactgcacagcacttgtggctgcgattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0042D07-ynGvl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0042D07.2" temp_strand="-" temp_description="C02SLe0042D07.2  AC215454.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0042D07 sequenced_by:kribb upload_account_name:korea">
        <position start="53062" stop="52018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52762" g_stop="52318" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0042D07.2" gen_strand="-" ref_id="TG507-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0042D07.2" gen_strand="-"/>
        <rDNA rDNA_id="TG507-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52762" e_stop="52318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCACTGCTAACTTTAGCTCAGCTGTTTCCAACAAAAATTAAACCTATAAAACAATTACGGTTAGAGAAAAGCTAGAGTCACATTTACATTACTCTCCTTACTCCTTTTATGCAATTTTGCCTTTAATTTGCAAATTCAAGTGGGTTCTTTTATTTTTTGCTGCTCGATATACCTATAGGTGGGAACAATATTGATTTATACATACTCTTTTTAGCGTTTGCCATTTTACTTTGCCTTTATTGCTCGTTGTGTGTTTATCTTGTATCCTTTTTGGAGCAACCATGGCCAAAGTGTGAATTTTTATTTACATCTTGATAATCGCTGCTTTCTTGGTGGCAGCTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTT</genome_strand>
        <mrna_strand>ATATCACTGCTAACTTTAGCTCAGCTGTTTCCAACAAAAATTAAACCTATAAAACAATTACGGTTAGAGAAAAGCTAGAGTCACATTTACATTACTCTCCTTACTCCTTTTATGCAATTTTGCCTTTAATTTGCAAATTCAAGTGGGTTCTTTTATTTTTTGCTGCTCGATATACCTATAGGTGGGAACAATATTGATTTATACATACTCTTTTTAGCGTTTGCCATTTTACTTTGCCTTTATTGCTCGTTGTGTGTTTATCTTGTATCCTTTTTGGAGCAACCATGGCCAAAGTGTGAATTTTTATTTACATCTTGATAATCGCTGCTTTCTTGGTGGCAGCTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="27000" PGL_stop="24386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27000" e_stop="26931"/>
            <exon e_start="26658" e_stop="26584"/>
            <exon e_start="25914" e_stop="25694"/>
            <exon e_start="24661" e_stop="24386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27000" e_stop="26931" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26930" i_stop="26659" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26658" e_stop="26584" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.858" acc_prob="0.831">
            <gDNA_intron_boundary i_start="26583" i_stop="25915" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25914" e_stop="25694" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.988">
            <gDNA_intron_boundary i_start="25693" i_stop="24662" i_length="1032"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24661" e_stop="24386" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27000" stop="26931"/>
              <exon start="26658" stop="26584"/>
              <exon start="25914" stop="25694"/>
              <exon start="24661" stop="24386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG : AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG : GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC : GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTAC</gDNA_template>
            <first_frame> G  F  P  D  L  S  G  A  V  C  P  I  A  V  D  Q  P  S  L  R  S  F  S   : E  G  V  T  N  N  V  G  R  *  S  S  P  S  L  T  R  Q  E  I  S  I  *  I  H   : G  I  S  N  F  I  I  L  C  F  Q  K  S  S  R  R  I  W  F  F  W  H  E  V  L  Q  N  I  S  T  H  W  S  G  C  I  W  T  S  R  F  C  D  S  S  I  C  *  *  G  *  T  R  I  G  M  P  K  L  S  L  A  S  C  R  H  S  *  F  I  R  S  C  F  :  D  S  S  W  S  P  G  L  S  T  S  M  C  I  L  S  F  N  V  T  C  F  I  S  *  L  G  R  G  G  I  Y  R  G  R  S  K  G  Y  G  S  *  D  *  G  G  G  W  A  *  *  *  G  *  N  V  Y  P  S  W  *  T  E  *  S  F  S  S  A  I  S  K  *  S  S  C  *  I  C  *  W  G  S  L  P  S  R  F  K  S  Y  Y </first_frame>
            <second_frame>  V  F  R  I  S  Q  A  L  F  V  L  S  P  S  I  N  P  L  Y  G  P  F  P  :  R  A  *  L  T  M  L  G  G  R  A  V  H  R  L  L  G  R  K  F  Q  S  E  S  T  :  A  S  P  I  L  S  S  F  V  S  K  K  A  Q  E  E  F  G  S  F  G  M  K  S  F  R  T  L  A  L  I  G  A  G  V  S  G  L  L  G  F  A  T  V  A  S  A  D  E  A  E  H  G  L  E  C  P  S  Y  P  W  P  H  A  G  I  L  S  S  Y  D  H  A  S :   I  R  R  G  H  Q  V  Y  Q  Q  V  C  A  S  C  H  S  M  S  L  V  S  Y  R  D  L  V  G  V  A  Y  T  E  E  E  V  K  A  M  A  A  E  I  E  V  A  D  G  P  N  D  E  G  E  M  F  T  R  P  G  K  L  S  D  R  F  P  Q  P  Y  P  N  E  A  A  A  R  F  A  N  G  G  A  Y  P  P  D  L  S  L  I   </second_frame>
            <third_frame>   F  S  G  S  L  R  R  C  L  S  Y  R  R  R  S  T  L  S  T  V  L  F  R :   G  R  D  *  Q  C  W  E  V  E  Q  S  I  A  Y  *  A  G  N  F  N  L  N  P  R :   H  L  Q  F  Y  H  P  L  F  P  K  K  L  K  K  N  L  V  L  L  A  *  S  P  S  E  H  *  H  S  L  E  R  V  Y  L  D  F  *  V  L  R  Q  *  H  L  L  M  R  L  N  T  D  W  N  A  Q  A  I  L  G  L  M  Q  A  F  L  V  H  T  I  M  L   : R  F  V  V  V  T  R  F  I  N  K  Y  V  H  L  V  I  Q  C  H  L  F  H  I  V  T  W  S  G  W  H  I  Q  R  K  K  *  R  L  W  Q  L  R  L  R  W  R  M  G  L  M  M  R  V  K  C  L  P  V  L  V  N  *  V  I  V  F  L  S  H  I  Q  M  K  Q  L  L  D  L  L  M  G  E  P  T  L  Q  I  *  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26649" stop="26584"/>
                    <exon start="25914" stop="25694"/>
                    <exon start="24661" stop="24388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMLGGRAVHRLLGRKFQSESTASPILSSFVSKKAQEEFGSFGMKSFRTLALIGAGVSGLLGFATVASADEAEHGLECPSYPWPHAGILSSYDHASIRRGHQVYQQVCASCHSMSLVSYRDLVGVAYTEEEVKAMAAEIEVADGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="35672" PGL_stop="33673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35672" e_stop="35369"/>
            <exon e_start="34870" e_stop="34755"/>
            <exon e_start="34662" e_stop="34416"/>
            <exon e_start="33906" e_stop="33849"/>
            <exon e_start="33721" e_stop="33673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.816"/>
          <exon-intron don_prob="0.587" acc_prob="0.805" e_score="0.991"/>
          <exon-intron don_prob="0.771" acc_prob="0.999" e_score="0.960"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.966"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.816">
            <gDNA_exon_boundary e_start="35672" e_stop="35369" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35368" i_stop="34871" i_length="498"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="34870" e_stop="34755" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.587" acc_prob="0.805">
            <gDNA_intron_boundary i_start="34754" i_stop="34663" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="34662" e_stop="34416" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.771" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34415" i_stop="33907" i_length="509"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="33906" e_stop="33849" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33848" i_stop="33722" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="0.918">
            <gDNA_exon_boundary e_start="33721" e_stop="33673" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35672" stop="35369"/>
              <exon start="34870" stop="34755"/>
              <exon start="34662" stop="34416"/>
              <exon start="33906" stop="33849"/>
              <exon start="33721" stop="33673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g14250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGTCCCAATTATTTCTTTTTATTTATTACCCAGTCCAGTTGAAGCCTCGTCTCTTAGACGTGAATCTGCTGAAACTCATAAGTGTGTTGATTGGGCGAGAGAGATGAATCTGAACATGAATTCAATGGAATCAGTGGTTGCTCAAATCCAAGGGCTATCGAGCAATTCATCAGACATAACTCAGCTTCACAACTTTCTCAAACAATCGGAAGAGCTACTCCATTCCGACTTCTCTCGCTTGCTTTCTTCTCTCGCTGAACTCGATCCTTCTATTCACTCCCTAGGTTTTCTCTATATTCT : GGAGGCATGCATCTCATTCCCAGTTGCAAAGGAGCATGTTAGTGAACTGCTTGTTTCTGTCGCTAGATTTATCAATTCATGTTCTACAGAGCAAATCCAGTTGGCGCCCAATAAGT : TCATTTCTGTTTGTAAAAAGTTCAAGGATCATGTTTTCGGACTGGAAACTCCGATTCGTGGTGTGGCTCCAATGCTGACTGCTATTCGTAAACTGCAATCCTCCCCTGAGCAATTAACAACATTGCATGCCGATTTTCTTCTTCTTTGTCTATTAGCAAAGTGCTACAAAACTGGCTTCTCTGTGCTGGAGGATGACATATATGAGATTGATCAGCCACGGGAGTTTTTTCTCTATTGTTACTACGG : GGGAATGGTTTGCATTGGACAAAAGCAGTTCCGCAAAGCATTGGAACTCTTGCACAAT : GTTGTGACTGCACCTATGTCTACTCTAAATGCAATAGCAGTTGAAGCTT</gDNA_template>
            <first_frame> K  K  S  Q  L  F  L  F  I  Y  Y  P  V  Q  L  K  P  R  L  L  D  V  N  L  L  K  L  I  S  V  L  I  G  R  E  R  *  I  *  T  *  I  Q  W  N  Q  W  L  L  K  S  K  G  Y  R  A  I  H  Q  T  *  L  S  F  T  T  F  S  N  N  R  K  S  Y  S  I  P  T  S  L  A  C  F  L  L  S  L  N  S  I  L  L  F  T  P  *  V  F  S  I  F   : W  R  H  A  S  H  S  Q  L  Q  R  S  M  L  V  N  C  L  F  L  S  L  D  L  S  I  H  V  L  Q  S  K  S  S  W  R  P  I  S  :  S  F  L  F  V  K  S  S  R  I  M  F  S  D  W  K  L  R  F  V  V  W  L  Q  C  *  L  L  F  V  N  C  N  P  P  L  S  N  *  Q  H  C  M  P  I  F  F  F  F  V  Y  *  Q  S  A  T  K  L  A  S  L  C  W  R  M  T  Y  M  R  L  I  S  H  G  S  F  F  S  I  V  T  T   : G  E  W  F  A  L  D  K  S  S  S  A  K  H  W  N  S  C  T  M :   L  *  L  H  L  C  L  L  *  M  Q  *  Q  L  K  L </first_frame>
            <second_frame>  R  S  P  N  Y  F  F  L  F  I  T  Q  S  S  *  S  L  V  S  *  T  *  I  C  *  N  S  *  V  C  *  L  G  E  R  D  E  S  E  H  E  F  N  G  I  S  G  C  S  N  P  R  A  I  E  Q  F  I  R  H  N  S  A  S  Q  L  S  Q  T  I  G  R  A  T  P  F  R  L  L  S  L  A  F  F  S  R  *  T  R  S  F  Y  S  L  P  R  F  S  L  Y  S  :  G  G  M  H  L  I  P  S  C  K  G  A  C  *  *  T  A  C  F  C  R  *  I  Y  Q  F  M  F  Y  R  A  N  P  V  G  A  Q  *  V :   H  F  C  L  *  K  V  Q  G  S  C  F  R  T  G  N  S  D  S  W  C  G  S  N  A  D  C  Y  S  *  T  A  I  L  P  *  A  I  N  N  I  A  C  R  F  S  S  S  L  S  I  S  K  V  L  Q  N  W  L  L  C  A  G  G  *  H  I  *  D  *  S  A  T  G  V  F  S  L  L  L  L  R  :  G  N  G  L  H  W  T  K  A  V  P  Q  S  I  G  T  L  A  Q   : C  C  D  C  T  Y  V  Y  S  K  C  N  S  S  *  S   </second_frame>
            <third_frame>   E  V  P  I  I  S  F  Y  L  L  P  S  P  V  E  A  S  S  L  R  R  E  S  A  E  T  H  K  C  V  D  W  A  R  E  M  N  L  N  M  N  S  M  E  S  V  V  A  Q  I  Q  G  L  S  S  N  S  S  D  I  T  Q  L  H  N  F  L  K  Q  S  E  E  L  L  H  S  D  F  S  R  L  L  S  S  L  A  E  L  D  P  S  I  H  S  L  G  F  L  Y  I  L :   E  A  C  I  S  F  P  V  A  K  E  H  V  S  E  L  L  V  S  V  A  R  F  I  N  S  C  S  T  E  Q  I  Q  L  A  P  N  K   : F  I  S  V  C  K  K  F  K  D  H  V  F  G  L  E  T  P  I  R  G  V  A  P  M  L  T  A  I  R  K  L  Q  S  S  P  E  Q  L  T  T  L  H  A  D  F  L  L  L  C  L  L  A  K  C  Y  K  T  G  F  S  V  L  E  D  D  I  Y  E  I  D  Q  P  R  E  F  F  L  Y  C  Y  Y  G :   G  M  V  C  I  G  Q  K  Q  F  R  K  A  L  E  L  L  H  N  :  V  V  T  A  P  M  S  T  L  N  A  I  A  V  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35670" stop="35369"/>
                    <exon start="34870" stop="34755"/>
                    <exon start="34662" stop="34416"/>
                    <exon start="33906" stop="33849"/>
                    <exon start="33721" stop="33674"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVPIISFYLLPSPVEASSLRRESAETHKCVDWAREMNLNMNSMESVVAQIQGLSSNSSDITQLHNFLKQSEELLHSDFSRLLSSLAELDPSIHSLGFLYILEACISFPVAKEHVSELLVSVARFINSCSTEQIQLAPNKFISVCKKFKDHVFGLETPIRGVAPMLTAIRKLQSSPEQLTTLHADFLLLCLLAKCYKTGFSVLEDDIYEIDQPREFFLYCYYGGMVCIGQKQFRKALELLHNVVTAPMSTLNAIAVEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="51336" PGL_stop="51803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51336" e_stop="51803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51336" e_stop="51803" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51336" stop="51803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG507-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAGCTGTGATCATTACAGCAGAGAAACCTTGGTCATCTTGGCTATCCAGATCAATCTCTCCTCGTCCAACCAGCGCCTTCAGGGACAAAAGGTCCCTGGATCGAGCCACAAACAGTAATGGTGAAAAGACAGATGCGTTGCTTGACTTGGGAACCTTTCCGCTCTGGATGACTTCCAGAACAGCACCCTGAAAACTGAGTTTCCATCGATTGGACACAGCAATGGAGATTGCAGATTCACCAGCTACATTAACCAAACCAAAATCAGCACCTGCTCTAGTCAATACTTTGAGGCATTCTTCCCTCTTGAATCTTGCAGAGATCATTAAAGCTGTATCTCCTGTGTCCGTTCTTGCATCCAGATCACAGCCAAATTCAATCAAACATTTAAGAACGCTTGAGAACCCAAGTCGGGCTGCCATGTGTATAGGACGAAACTCAATGTTCCGGGTGGTTATAACTGGAG</gDNA_template>
            <first_frame> L  Q  L  *  S  L  Q  Q  R  N  L  G  H  L  G  Y  P  D  Q  S  L  L  V  Q  P  A  P  S  G  T  K  G  P  W  I  E  P  Q  T  V  M  V  K  R  Q  M  R  C  L  T  W  E  P  F  R  S  G  *  L  P  E  Q  H  P  E  N  *  V  S  I  D  W  T  Q  Q  W  R  L  Q  I  H  Q  L  H  *  P  N  Q  N  Q  H  L  L  *  S  I  L  *  G  I  L  P  S  *  I  L  Q  R  S  L  K  L  Y  L  L  C  P  F  L  H  P  D  H  S  Q  I  Q  S  N  I  *  E  R  L  R  T  Q  V  G  L  P  C  V  *  D  E  T  Q  C  S  G  W  L  *  L  E </first_frame>
            <second_frame>  C  S  C  D  H  Y  S  R  E  T  L  V  I  L  A  I  Q  I  N  L  S  S  S  N  Q  R  L  Q  G  Q  K  V  P  G  S  S  H  K  Q  *  W  *  K  D  R  C  V  A  *  L  G  N  L  S  A  L  D  D  F  Q  N  S  T  L  K  T  E  F  P  S  I  G  H  S  N  G  D  C  R  F  T  S  Y  I  N  Q  T  K  I  S  T  C  S  S  Q  Y  F  E  A  F  F  P  L  E  S  C  R  D  H  *  S  C  I  S  C  V  R  S  C  I  Q  I  T  A  K  F  N  Q  T  F  K  N  A  *  E  P  K  S  G  C  H  V  Y  R  T  K  L  N  V  P  G  G  Y  N  W   </second_frame>
            <third_frame>   A  A  V  I  I  T  A  E  K  P  W  S  S  W  L  S  R  S  I  S  P  R  P  T  S  A  F  R  D  K  R  S  L  D  R  A  T  N  S  N  G  E  K  T  D  A  L  L  D  L  G  T  F  P  L  W  M  T  S  R  T  A  P  *  K  L  S  F  H  R  L  D  T  A  M  E  I  A  D  S  P  A  T  L  T  K  P  K  S  A  P  A  L  V  N  T  L  R  H  S  S  L  L  N  L  A  E  I  I  K  A  V  S  P  V  S  V  L  A  S  R  S  Q  P  N  S  I  K  H  L  R  T  L  E  N  P  S  R  A  A  M  C  I  G  R  N  S  M  F  R  V  V  I  T  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51530" stop="51802"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSFHRLDTAMEIADSPATLTKPKSAPALVNTLRHSSLLNLAEIIKAVSPVSVLASRSQPNSIKHLRTLENPSRAAMCIGRNSMFRVVITG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="54980" PGL_stop="52286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54980" e_stop="54638"/>
            <exon e_start="53082" e_stop="52807"/>
            <exon e_start="52420" e_stop="52286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.956"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.986"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="54980" e_stop="54638" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54637" i_stop="53083" i_length="1555"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="53082" e_stop="52807" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52806" i_stop="52421" i_length="386"/>
          </intron>
          <exon e_serial="3" e_score="0.941">
            <gDNA_exon_boundary e_start="52420" e_stop="52286" e_length="135"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54980" stop="54638"/>
              <exon start="53082" stop="52807"/>
              <exon start="52420" stop="52286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g14230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGCGTCGGAAAATGACAGTGTTTGCCCATTCTGGTGGCGGAGGTGGTTTCCTCGCCGGGAAACAGGTCTTTCCGGTGAACTACGAGGCTGAAGTTTCCCGTCGTCTTCTTGAAGCGTCGCATACAAACGATCTGACATTAGCTCTTGAGTGTATCGCCGATCCGTTTGTGGACGTTAATTTCGTCGGCGATGTGTGTTTAAAGGTTCGAAAAGCAGAGGTCGTGACTCATGACGAGTTGCCGAACGAAGTTAGGATCATTTACGAGGAGTTCAAAACCGACGTTACGGCTTTGTTCCTCGCCGCTCATAATGGAAATGTTGCTCTAGTGAGAAAACTACTG : AGCACTGGAGCCGATGTAAACCATAAACTTTTCAGGGGATTCCCAACCACGTCTGCTGTGAGGGAGGGACACCTTGAGATCTTGGAGATGTTAGTTAAAGCTGGGTCATCTCAGCAGGCTTGTGAGGAAGCTCTGTTGGAGGCCAGCTGTCATGGGCATGCAAGAATTGTGGAGGTGCTCATGGAATCGGACCTGATTCGACCTCGTATTGCTATACATGCTTTCTTCACTGCATGCTGCCGGGGATATGTAAATGTGGTGGACACTCTCCTTAAG : CTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTTGTAGGCAAGTCTCTGTAGTTCGTCTGTTGCTT</gDNA_template>
            <first_frame> L  A  S  E  N  D  S  V  C  P  F  W  W  R  R  W  F  P  R  R  E  T  G  L  S  G  E  L  R  G  *  S  F  P  S  S  S  *  S  V  A  Y  K  R  S  D  I  S  S  *  V  Y  R  R  S  V  C  G  R  *  F  R  R  R  C  V  F  K  G  S  K  S  R  G  R  D  S  *  R  V  A  E  R  S  *  D  H  L  R  G  V  Q  N  R  R  Y  G  F  V  P  R  R  S  *  W  K  C  C  S  S  E  K  T  T   : E  H  W  S  R  C  K  P  *  T  F  Q  G  I  P  N  H  V  C  C  E  G  G  T  P  *  D  L  G  D  V  S  *  S  W  V  I  S  A  G  L  *  G  S  S  V  G  G  Q  L  S  W  A  C  K  N  C  G  G  A  H  G  I  G  P  D  S  T  S  Y  C  Y  T  C  F  L  H  C  M  L  P  G  I  C  K  C  G  G  H  S  P  *   : A  W  S  D  C  E  C  Y  K  S  C  V  A  P  V  K  *  T  F  S  A  Y  K  C  G  L  H  S  T  C  G  C  D  C  L  *  A  S  L  C  S  S  S  V  A  </first_frame>
            <second_frame>  L  R  R  K  M  T  V  F  A  H  S  G  G  G  G  G  F  L  A  G  K  Q  V  F  P  V  N  Y  E  A  E  V  S  R  R  L  L  E  A  S  H  T  N  D  L  T  L  A  L  E  C  I  A  D  P  F  V  D  V  N  F  V  G  D  V  C  L  K  V  R  K  A  E  V  V  T  H  D  E  L  P  N  E  V  R  I  I  Y  E  E  F  K  T  D  V  T  A  L  F  L  A  A  H  N  G  N  V  A  L  V  R  K  L  L  :  S  T  G  A  D  V  N  H  K  L  F  R  G  F  P  T  T  S  A  V  R  E  G  H  L  E  I  L  E  M  L  V  K  A  G  S  S  Q  Q  A  C  E  E  A  L  L  E  A  S  C  H  G  H  A  R  I  V  E  V  L  M  E  S  D  L  I  R  P  R  I  A  I  H  A  F  F  T  A  C  C  R  G  Y  V  N  V  V  D  T  L  L  K  :  L  G  V  T  V  N  A  T  N  R  V  L  L  Q  S  S  K  P  S  L  H  T  N  V  D  C  T  A  L  V  A  A  I  V  C  R  Q  V  S  V  V  R  L  L  L </second_frame>
            <third_frame>   C  V  G  K  *  Q  C  L  P  I  L  V  A  E  V  V  S  S  P  G  N  R  S  F  R  *  T  T  R  L  K  F  P  V  V  F  L  K  R  R  I  Q  T  I  *  H  *  L  L  S  V  S  P  I  R  L  W  T  L  I  S  S  A  M  C  V  *  R  F  E  K  Q  R  S  *  L  M  T  S  C  R  T  K  L  G  S  F  T  R  S  S  K  P  T  L  R  L  C  S  S  P  L  I  M  E  M  L  L  *  *  E  N  Y  * :   A  L  E  P  M  *  T  I  N  F  S  G  D  S  Q  P  R  L  L  *  G  R  D  T  L  R  S  W  R  C  *  L  K  L  G  H  L  S  R  L  V  R  K  L  C  W  R  P  A  V  M  G  M  Q  E  L  W  R  C  S  W  N  R  T  *  F  D  L  V  L  L  Y  M  L  S  S  L  H  A  A  G  D  M  *  M  W  W  T  L  S  L  S :   L  E  *  L  *  M  L  Q  I  V  C  C  S  S  Q  V  N  L  L  C  I  Q  M  W  T  A  Q  H  L  W  L  R  L  F  V  G  K  S  L  *  F  V  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0042D07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54979" stop="54638"/>
                    <exon start="53082" stop="52807"/>
                    <exon start="52420" stop="52286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRKMTVFAHSGGGGGFLAGKQVFPVNYEAEVSRRLLEASHTNDLTLALECIADPFVDVNFVGDVCLKVRKAEVVTHDELPNEVRIIYEEFKTDVTALFLAAHNGNVALVRKLLSTGADVNHKLFRGFPTTSAVREGHLEILEMLVKAGSSQQACEEALLEASCHGHARIVEVLMESDLIRPRIAIHAFFTACCRGYVNVVDTLLKLGVTVNATNRVLLQSSKPSLHTNVDCTALVAAIVCRQVSVVRLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52762" e_stop="52318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52762" e_stop="52318" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52762" stop="52318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG507-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCACTGCTAACTTTAGCTCAGCTGTTTCCAACAAAAATTAAACCTATAAAACAATTACGGTTAGAGAAAAGCTAGAGTCACATTTACATTACTCTCCTTACTCCTTTTATGCAATTTTGCCTTTAATTTGCAAATTCAAGTGGGTTCTTTTATTTTTTGCTGCTCGATATACCTATAGGTGGGAACAATATTGATTTATACATACTCTTTTTAGCGTTTGCCATTTTACTTTGCCTTTATTGCTCGTTGTGTGTTTATCTTGTATCCTTTTTGGAGCAACCATGGCCAAAGTGTGAATTTTTATTTACATCTTGATAATCGCTGCTTTCTTGGTGGCAGCTTGGAGTGACTGTGAATGCTACAAATCGTGTGTTGCTCCAGTCAAGTAAACCTTCTCTGCATACAAATGTGGACTGCACAGCACTTGTGGCTGCGATTGTTT</gDNA_template>
            <first_frame> I  S  L  L  T  L  A  Q  L  F  P  T  K  I  K  P  I  K  Q  L  R  L  E  K  S  *  S  H  I  Y  I  T  L  L  T  P  F  M  Q  F  C  L  *  F  A  N  S  S  G  F  F  Y  F  L  L  L  D  I  P  I  G  G  N  N  I  D  L  Y  I  L  F  L  A  F  A  I  L  L  C  L  Y  C  S  L  C  V  Y  L  V  S  F  L  E  Q  P  W  P  K  C  E  F  L  F  T  S  *  *  S  L  L  S  W  W  Q  L  G  V  T  V  N  A  T  N  R  V  L  L  Q  S  S  K  P  S  L  H  T  N  V  D  C  T  A  L  V  A  A  I  V  </first_frame>
            <second_frame>  Y  H  C  *  L  *  L  S  C  F  Q  Q  K  L  N  L  *  N  N  Y  G  *  R  K  A  R  V  T  F  T  L  L  S  L  L  L  L  C  N  F  A  F  N  L  Q  I  Q  V  G  S  F  I  F  C  C  S  I  Y  L  *  V  G  T  I  L  I  Y  T  Y  S  F  *  R  L  P  F  Y  F  A  F  I  A  R  C  V  F  I  L  Y  P  F  W  S  N  H  G  Q  S  V  N  F  Y  L  H  L  D  N  R  C  F  L  G  G  S  L  E  *  L  *  M  L  Q  I  V  C  C  S  S  Q  V  N  L  L  C  I  Q  M  W  T  A  Q  H  L  W  L  R  L  F </second_frame>
            <third_frame>   I  T  A  N  F  S  S  A  V  S  N  K  N  *  T  Y  K  T  I  T  V  R  E  K  L  E  S  H  L  H  Y  S  P  Y  S  F  Y  A  I  L  P  L  I  C  K  F  K  W  V  L  L  F  F  A  A  R  Y  T  Y  R  W  E  Q  Y  *  F  I  H  T  L  F  S  V  C  H  F  T  L  P  L  L  L  V  V  C  L  S  C  I  L  F  G  A  T  M  A  K  V  *  I  F  I  Y  I  L  I  I  A  A  F  L  V  A  A  W  S  D  C  E  C  Y  K  S  C  V  A  P  V  K  *  T  F  S  A  Y  K  C  G  L  H  S  T  C  G  C  D  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0042D07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 138664 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 27732 bytes was the average size of a spliced alignment
$ 9432 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2358 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:57:26
-->
