<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:41:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g37280" ref_strand="+" ref_description="C2_At4g37280">
      <seq>gtttttgaaaccgataaagaagtgggaaacaaattcctccgtcacatacggccaaaggcggaggagatactactgttcggaagtctctgataaacggaaatggttaactcaaaagacaactcctctaccgacagcgaaaactcctccggtgacgttcccaactctaaacctagtctctactttgaaggcgagaaggttctcgcttatcatggccctcgcatctacgaagcaaaggtccaaaaagcagagctacggaagaacgaatggagatacttcgttcattaccttggctggaacaaaaattgggatgaatgggtaggcgctgaccgcttgatgaagcacacggaagacaacgtcttgaagcagcaggccctggacaagaagcagggcatggagaaaagtactaaatctggacgttcagcaccggcaaaacccaaaagctcagctgatgttaaactggacaaggaagaaactaagagcaatgttccaaaagggaaaaagcgcaaaactgactcaggcgctgagaagggcaatgtatctgtagagaaacttgtgaagattcagattccatctactttgaagaagcaactggttgatgattgggaattcatcatgcatcagaataagcttgtgaagctcccacgatctcccagtgtggatgatatattgaccaagtaccttgaataccgatccaaaaaggacgggatgatgactgattcagttggggagatactgaatggaattcgatgctattttgacaaagcactgcctgcgcttttattgtacaagaaggagcgccaacagtatcatgaagcagtttcagataatgtctctccatctagtgtatatggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="-" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17516" stop="8218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17217" g_stop="16984" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15389" g_stop="15336" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="288" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15148" g_stop="15135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="302" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13885" g_stop="13740" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="448" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13130" g_stop="13095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="484" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13094" i_stop="11132" i_length="1963">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11131" g_stop="11091" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="525" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11090" i_stop="10554" i_length="537">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10553" g_stop="10452" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="627" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9760" g_stop="9681" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="707" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8664" g_stop="8518" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="854" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="-" ref_id="C2_At4g37280" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g37280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17217" e_stop="16984"/>
          <exon e_start="15389" e_stop="15336"/>
          <exon e_start="15148" e_stop="15135"/>
          <exon e_start="13885" e_stop="13740"/>
          <exon e_start="13130" e_stop="13095"/>
          <exon e_start="11131" e_stop="11091"/>
          <exon e_start="10553" e_stop="10452"/>
          <exon e_start="9760" e_stop="9681"/>
          <exon e_start="8664" e_stop="8518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGCACGTTTCTTGTTTTTCTCTTTTCATCTTATGCAGAAATCGCTAATTTTGTTTGGGTATACCGTAATTAATTGCCGAAATTGAATGATTAGGCCTTTTATCACACGTATCTTCCTTTGGATTATTCGTGTATCTAATTTGTCTGTAACGGTTGTGTCATATCTTCTCTGATTTATGTTTGATAATTGGTTGAGATTTTTTGTCATTTTGCTTTTCTGTTTGCTGTTAGATATGCACCACTTTGCATCCGATTGTGTGATGATTTCAGGGGAACTATTATGACTTTTGGACTGTTTCATCCATATTTAATGCTAAATTGGCGTAGAATTAGAGTTGCAAATTATACTAATCCTGTCCTGTAATCCATAATTCTGTTCGTTTTTTTAGCTTTATGAATAAATTATGGATTGTCTCTACTGTTTGATGCTTTTAGGTTTGCTTTATCATCTTAACTCATTGCTCTACTGACTCTAATCTAGACTTAGGGGTCAATCTATTGATTTTTTCTGTGGACTCCACTCTCTCTGCTCTAATGTCTGTTAAGCCTTCTCAAAGATTAGGTAAACTAAACAATTGGCAGTGTCGAAGGATGTTACATATATGAACATCCTCATATAGATTGTGGAAGGGTTCCTAAATTGATTTAGCGATCTTGAGCTAGTCTCCATCATGATTTTATTTAGATAATCTGATTTGCGCCCCATAGCAAACTTTTTGGCATGATTGTTTTCACATATCATAGAAACAATTTTTAATGTCTTATATATTCAATACATTTACACTGATTTTGTATTTTTGTGCAATCCATGTAAATATGGGTTGATCTGAGTTTAAGAACTGGGATGAATTTTGGAAAATATACTTCAACTTTTGACCTATTCCAGTTACCCGATCTTCCCTGCAAATCATGTTTTTGTATGTCAAGAGAATGCAACTCTAGACAATATATGGTTCTTATACGGAGGATTGCTAGTTTCACCTCTTATAGTTATGCACTAGTGTATTTCTGACAGGATATAGTGTGTGATATGTAGGTCAGATGCACATCATGGGTTCGAATCCTACCATAGACAAAGGCCTGATATTTAAGTGGAAAAGGGTAGAGGGGCAGGTTCATTATCCACTGAGTTTTGAACCATACACCACTAGCCGTTGGAAATTTCTCAGTTATTAAAAAAAAGTACTACTCAGCTTATTGAAATTACATATTAGTGAATAATTTGAGTTGTTGGGATTAGTTTTGGCTTCGTTGATATAGGACAATTGAAGTACTAAGTTTGCAAATGTTGTTGTTATTTGTGTATTTTCTCTAAAGCTCGAACTTTACTTTGAGAATGCTTGCACTTTGCTCTTGCTTATAACTCTCAAAATCGTGTTGTTTGTTTACACTTGTGACAATTGAAAATACCAATTGTGTATAAGTTTTTTCTTACAAGAGAAAGCTTCATTTCCTCTATATGGAAAACAATTAGTGTACGGTGATATAGTGCTTGCCTTCTACAAATTGTAGCGCCCTGATGAAATCATGTTATTTAATGCTTGCTACAAGATTTTTGCGACCCTCCAATTTGATCCTTGCATTTCTTCTTTGAAGGTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGTAAGTTTAAATTTATATCTTCTTTCACCATATGCTTTACATATGACAATTAAATTTGGTACTTCTTTAGTTAAAAGATGTGAGAAAGCTTGTAGCATAGCCTTACATTATTACCTTGTTTAAAATTTTTTCAATATTCTTAATGATATCGAGAAATAATACTCCTTTTATTTATTTTAATTTACAGGGCTGGAACAAAAAGTGAGTTTATGAAGTTACTTGTAGAAAGTTCTTAATTCAAGAGTATCTTAAATTGCTAGTCACATCAGGATTGAAAGGTTGACCAACTCATTTGAATGTTGAATGTGCTGCCTTAAAAGTTTTTTCTTTGAATGTTCTGCTCCGAAGGAGCTTGGCCTTGAGCAAGAGGCATAGAGTAATTTGATGCTTCCTTGTTGATTATGGTGATTATTTTACAAATTATATGTGGAAGGTTGTGCTGCTCTGGATTTAAAGTGCAATTGTGAATACATAATTTTGATTTGCATAGCATCAGGTAGCACAATGAATTTGGTCTTTGGATATTAATAGCGAAGTTTTATCATTTTAACTACATGCTCCTTTTGTTTCAAATTTAGTGTTCATCTCTCCATTTTGATCTTTTGGGAGAATATTTTCATTTTCTGTAAATGGGAATGATTCGAAGATTTAATACTTTACATGGGGATCTACCTTTACTCTGATCCTTAAGCACTTTCTTTATGTTATTCTAACAAACATTTGCCAATATTTCAAATAATCCTAATTCCTATCTTCCCATATAAATTCAAACAATGATGTTGAAATAGAAAAGGACTGATAACAAGTTCTCTCAGCTTTTTTGCCTGTGTAATAAGGACTAATTCAATAGACATTCATGATTTCACTGTTCTCCCCCTGTCTTATTGTGCATGGTACTTTTACTATTTAGATACTCAAGCTCTTTCTTTGGACTACAGTTTTTTTACAATATTTTTAATTTAAAAAATCATTTACAAATGTTTGTAACTTCGTAAATTTATTCAAAAAAATTAAGCAATTGATGGTTAAATTTTTGCTCTGAAATTACATTCTATGACTTGGTACTCCAAACCCCATAAACTCTTTTCAGCGACAGGAAATAATAGCTATTTTACATTGCTGTGTACGTCTGGTTCTGCAGCAAATGTGAAGCTAGTTTTTTGTGTACTTCAATCTGAATTTTGGATGTTGTAGTTGTTAACTCTCTGATTTAAAAATAATGATTTACTTTCTTTTTTAGTCTGTTTCAGAAAGATTGACCCATTTCCTTTTTTGGCAACACTTTAGTTTTAGCTTTCCATGTAGCATGTTTAGGAACATAAGATTAGAGGACATTTTGGTACATTTGACATAAATTAAACTAGGTCCTTTTTTTTTAAACAGAGGGAGTATTTGTTGATTGTAAGTATATTCTGCAAACCCTAATTCCTGAAACTATGTCTTGTAACAGTTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTGGTAAGTTTTCTCTAGGTTTATATTAGAATGAGGGCTATAGATGACCATTTTAGGTAGTTCTCTGGTCATGGAAATACTTTCTTGCATAACCATTTTTAAGTAGTTCTCAGCTGGTATGTTTTCTCTAGGTTTATATTGGAATGAAGGCTATAGATGACCATTGTAGGTAGTTCTCTGGTCATGGAAATACTTCCTTGCGTAACATATCGAAATTTATAACACTTTTCAGGTATCAGTATTACTCCTGATGCCTTTTATAGAAGTCGAAAGTCTATTTGGAGAATTAGCTGATTGAAATATAATAGTCGTTTGAACCAAATTCCAGAAGATTAGTTTCTTAATGATGTTTGGTTATGTGACTCGGAAATATGGAAACGTCACCAAAGTTAAGGTTGTAAATCCTCTTTAGCATAACTTGACATACCAACATGTACTCTTTTTGTTGTTCTAACTCATGTTTTCAATTTCGAAGTTCTCTTTGCATATCTAACAGTGAATGTTAATTACAAAACCAAATGCCTGTCTCCTCTGAAGGAAAGATGATGTAACGGAGTCAAGGGTTAGGTCTAGGGATTGAATTCTTGTTAGTAACTTACTTTTCATTTGCAGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGGTATGCCATCTTATGATTTTGAATTTTGTGCTTCTCCTTGAGCTCTTCTGCATTATTTGTTGGGGGTGGATGGTAATTATGTGGCTTGGACATTATTCCTCCTTGAATTGTGTTTGCTTTGAGTTTTTTTTTGTTGACACTAGTAACATTTTGTGTTTGCTTTGAGTTAATTTAGGCCTGATAGTAATAATAAGGCCAGAAGGTAGGGATTCCCACCGTCCTCCACATAAGTAGAGTAGGTTGGTCTGTTAGATATAAATTCCCTTTTTTGTTGGATAAGGAATTTTTTTCCTTATTTTTGACTCTCCATTTAACTTTTGTTTTTAAAGAAGCTGCATAACCCTTCCCAAAGACCTCATTCTGAAAGCCTCCCAGTTCCCTTTCCAAATTAAAGAAATGGGGCACTGATTAATAAAGCATCCTTGACCTCAACCGTAACTGCGGGTACTGATGAATCAGGTATCCTGAACCTCAACCCTAACTTCTTTAGAACAATTATTGCTGTGTGTTGCTTTATTAGTTTCATTTTTAGTTGTAAAACTAATGTTTAGGAAGTAGTCTTCTTGTATATACTGGAAATCTATCCCAAACCTAATTATTATGTATTTTTTGACATAATATACTTTATTGATTGTCTTTGTCAAAAAAATATACTTTATTGATTATATTTAGGCAATGTACATTTTTCTCAGAAAAGTTAAATCTCATTTTTTTAAGCCGCCTTAATCAAATGTTCCACTCAGAAACACCATATAATCTAGTTGTATTTCAATTTGTCTAGCAAATCAATTAGAAAGCTGTAGTAATTGCATTTATGAGGGTATAAATGAAGCATGCTGGATGAATACCTTGATAAGACACAGTTTTAGACTTAAGTATGGATTATGTGACTTGGAAGACGCAATGCATATACTAGGATGTTAAGCATAGGTGGAAGAAAAATAAGAAAAGGAGGAAAATCAGAAGGATTGCCAAGAAGCAAGATATGATTGCATTGGAGAAGTAATGATTGTCTTTCCTATAACAAAAGAAAGTATAAGGGCAACAAAGGCCATTACCTTAAATTTTCAATAGTTGACATGCCTTTGACTGAGTATACACATAGAATGTGGAGGCTCGTCTTTCTGTTTGTAAAATTAATCAGGGATCACAAGAAACACAAAGAATATGGAAGAAAATTGGTCATTACTAGAATTTTGTGCCTCGCTTTCTTCTTTGGCGAGGCTTGCTCATGCATATTTTTCATGTTCTACCATAGCAAAGAGACAACTTCTTTCTTCTTGCCTTTGCATATGCTCTAAGAATGCATGTTCTGATCACTATTTACTACTATGATTGCTAGCTCATACTCGTTATCTAGTTTAAATTTTGGTATTAGAGATCTAATTGAGGTAAAAGATTTGACTCTTCGACTGGCTTTTGGACATTTAACTGATGGAAGCTGTACCCGGGCAGTACATAAAATTAGTATAGCTCAATCAAAGTATCCAGTTCCATTCAAATCCCCTGATGATAACTTATACAAAAGGTTTTGGGTTATCAGATCAAATCAAATGTTAAAGACCTTGATAACTGTGGAGAATCCCACTCAAAATTCTCACTGTTGTGGGTAACATTCATGTGCAGTGGATACGATTATTAGGATACATGCAAGATGGGAAGGTAAAAGTCAAAACCTACAGTGTTCTCCTTAACTTTCCTATTGGCGTTTGTCTACTATGGACACTGTAATATTGTAGATGAAATAGCCTTGAGTTGGTCAAGGTGTTGACTTTGTTCTAGTCATATCATGCTATGCTGGAGTATACCTGTTTTATCTTAGGATTACGTATTACCAAATTAGACAGAAAGATTCTGTTAAGTAAGGTCTATTTGATCTGCTTATAAGAAAATCTAGTCTGTTAGTTTCTATTGGGGATTTGCTTATAAGAAATTTATCTTTAAAATTGAACTTTTCTTGCAGTTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAGGTTTGCTTAATTCTAGACTCTATAACTCACTGTTTCTTTTTCCTTTTCGAGGTAATCGTTGACACTCTTCTTGTGTAGAGGCCCAACATTTACTTCCAAATAACATTGTTGGACTAAATCGTTATGTAAAGTTATTTACATTCTGCAGAATACTCCATTAATAACACCTCCATTTTAGTCATATTAAGCTGTGTGATTTAGGCACCACTATCCCCTCCCTCTCTAATCACACTTCTTTTTCCTTTGAAGACATTTTTTGTTGAAAAGTTCCTCAGCTATTATTTAAGTGCTTCAATCACATCGAAGGAAGTGATTTAAAAAGACCTGCAATTGCTTGATCAATACAAACTTAGGTAAAAATAGGGACAATGGAAGAAAAAGATCCATGTAGGTGATAGCTATTAGTTGAGGATAGGTATTAGACTCGTATGGAACTTCCTTTTTTTTTTCTGGTAATGCGTAGTAGTAGTAGTTGTTTTTGTTGTATAGTATTAGTGTTTGAAAGATATTGATTTGTAACTCGGTCATTGATGGCAGAAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAGGTATATATGTGTAGGATAATGACTAAGTCTATATGTCGTATTTTCTGTTGGCAAGCTCATTAGCAGTTGAAGACACAAGTGACTCAAAAAGATCTTGGATTCCTCTGTTTCGATTTCTAGTGTTTCATGGAGATTGACTCCTATAAAAAAAAAATTTATCAAGTAATATAGTTCCAGTCATATTATTAAGGTTGCTTAGCGGGAGCCGTGCTCCAACAAGAACCGAGTCCTAGTATTGGACACATTGTGGATGTAAGTAAAGCGTTGTCTTGTAAGGTTGATGGATTGGAGCATAGATGGAAAATGGGAAACCCATAATAGAGCAATCAACCAGCAGTAGAATTGCTGACTCATCTTATCTCAACTTGAAACCCCCCCCCCCACACACACACAAAAGGCGCAGACAAATAGATAAGGGCGATGCCTAATTTGCTTTTGAGATCTTTGCTGATTTACTAGACTAAGTCCCTCCCAGGCCCAGCTAATCTGAGCAGGAATTTTATGAGATTAAATCGTACTGGATAATATGACACTTATCTGTCCTGCTACATGTCTGTATTCTTCCCTACAAGTGCATGCTGGAGTTGATCAAATTTCTTTTCTTCATTTTGTTCAGACTATGTTGGTTCTTAGTGTTGGTTGCTAAATACAATATTGCCAGTGATGATATCTGATGTGTTATTCTTAACAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGATGTAAGTTCACTGCCCTTTTCTTTTCATGTAAGGGTGGATTTATTGCTGAGCTGTGGTTATGCATCTATGTTTCATTCTGGTGTCCTGTAATTTGCATGGTCAATGTTGGAATATATTGGTTCTACCCGGTATTTGTACCGGTAAGAGGTAAGAGGTAACAGGTATCCGGTAGAATTCGTTAAGGTGCGCACAAGCTGGCCTAAAAACCACCATCATAAAAAAGAAACATTTGAAAGAACTAATTGCGAAATTGGTTCTTTCAAATATTTCTTTTTTATGATGGTGGTGTTTGGGCCAGCTTGTGGGCACCTTGACGAATTCTACTGGACACATGTTACCTCCTACCGGTACAAATATCGGGTAGCTTTGCCCACCAAGGCTTGGGCAAATGGGAAGAAATGACCTAGTGCTTTTTGTCTCGATTGGAGTTGAAGTTGAGACCTCATGGTTCTCCCCTACTTCATGGAGCACTAGTTCATTATCTTTGGGGGAAAACAAGTCTTTTAACACCTTTGGGGGCGATATTGGTTCTTTCAAAACTTAGCTTTTAACTCTGTCAGTAAAACTCATGCACGTTTAAGGACCTATAGTCTAGTGTAGGATATTGTCGATTCACTAAATTATGCTTTCTTGATATCAAGTTGGTAGTTGATTTATTGCTAAATGGTAAGTTTTTTCACCAAAAAAAAGCAAGTTACTTTTGATCTTGTTGAACTGCTTCTTATCGGATTCATATACACAACCAGTTAGCTTCAACTCCTATGTGTCTGCATTAAGTCATTGGAAATTACTACAGTTTCAGAATAGACCGAGTTTCCCATCTTGTTGACTCCTATTTGCAGAAGTAGGTAATATCAAAGGCCAACATTATTTGCAGAAGTATATCATCTCTGCTGGCCACAAGTACCTTTGCATGAGTAGTCAATGCATACTGAGTGTATTTAGTATGGCATAAAATGACTTTGGAGGTATAGTTCATTTAATAAAAATGCCTTCCAAATGTTTGATCCTCGCAGGATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGC</genome_strand>
        <mrna_strand>GTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGTTCGGAAGTCTCTGATAAACGGAAATGGTTAACTCAAAAGACAACTCCTCTACCGACAGCGAAAACTCCTCCGGTGACGTTCCCAACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAGCAGAGCTACGGAAGAACGAATGGAGATACTTCGTTCATTACCTT...........................................................................................................................................................................................GGCTGGAACAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGATGAATGGGTAGGCGCTGACCGCTTGATGAAGCACACGGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTGGTTGATGATTGGGAATTCATCATGCATCAGAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAAGCTCCCACGATCTCCCAGTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCGCTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g37300" ref_strand="+" ref_description="C2_At4g37300">
      <seq>gaatatactaatatcagtagcgttgacgacccacaccgtttacacctctgacaatatcatggaacggcatctaacggtgaccaaacccagccggagcgacgaagttttagtcgaagatgagcagctgcgaatcgccaaccaggtcaaagccctgttcgatgctcaagcacctaaaagacttgccaaacctaaccgcagtgaacctgattcaggcacccccatttcccctttagaagatttccctattccagagcttgacaatctccgatctcttcaatcccagggtggtagtattttttcggaaactatttgctcggagcaagacgagtttgtggaaactcagtactacaatgagttggtttccattgataaacagcatcacacgactggaagtgggttcataaaggtggtcgatcaaacgaatgaaaacatgtacaatcttcaattgaatggtggtcatgagaatggtagagcgaaagaattcaagactaatccggcgacaaacgactggattcccagtagtgatgattatcaggttggattcacctcctcaaaacccagccggagcgaaagtgattagatcgaaagtcaagaaagcaatcagatggtgaaggtggtttgttctgttttcttgaatttgtttcttaatcttgactgattggagagacaatgacagatggagattgagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0017H17-A4Bcr/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0017H17.1" temp_strand="+" temp_description="C02SLe0017H17.1  AC215447.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0017H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37219" stop="38805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37519" g_stop="37802" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37875" g_stop="37976" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="385" r_length="102" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147">
            <donor d_prob="0.689" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38124" g_stop="38273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="535" r_length="150" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86">
            <donor d_prob="0.839" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38360" g_stop="38495" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="670" r_length="135" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0017H17.1" gen_strand="+" ref_id="C2_At4g37300" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0017H17.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g37300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37519" e_stop="37802"/>
          <exon e_start="37875" e_stop="37976"/>
          <exon e_start="38124" e_stop="38273"/>
          <exon e_start="38360" e_stop="38495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTACTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAGGTACTCTGCTAATTTTCCGTGCTGGTACATATTATTTTACTCTTTCTGATCACTCCTTTTGATTTTGATCAGGGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACGGTTCTCTACTCGTCTCTTTCGCACGAAACGATTTACTACTTTTGAATTTATGATTACCTTTATTTTCTGGGTTCAATTGAATCATATTCAATATAGTCTCGATCCAGGATACGGAGATTGTTTATGTTATTCACTATTTGTTGGCAGACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAGGTTTTTGATACATCGAGTTCATTGACTCTCCATGTGTTAAATTATACGAAATAAATTTGTGTTCAGTTTTCATATGTATTGATCAGGTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAA</genome_strand>
        <mrna_strand>GAATATACTAATATCAGTA-GCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGACCAAACCCAGCCGGAGCGACGAAGTTTTAGTCGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCCTGTTCGATGCTCAAGCACCTAAAAGACTTGCCAAACCTAACCGCAGTGAACCTGATTCAGGCACCCCCATTTCCCCTTTAGAAGATTTCCCTATTCCAGAGCTTGACAATCTCCGATCTCTTCAATCCCAG........................................................................GGTGGTAGTATTTTTTCGGAAACTATTTGCTCGGAGCAAGACGAGTTTGTGGAAACTCAGTACTACAATGAGTTGGTTTCCATTGATAAACAGCATCACACG...................................................................................................................................................ACTGGAAGTGGGTTCATAAAGGTGGTCGATCAAACGAATGAAAACATGTACAATCTTCAATTGAATGGTGGTCATGAGAATGGTAGAGCGAAAGAATTCAAGACTAATCCGGCGACAAACGACTGGATTCCCAGTAGTGATGATTATCAG......................................................................................GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAAGTGATTAGATCGAAAGTCAAGAAAGCAATCAGATGGTGAAGGTGGTTTGTTCTGTTTTCTTGAATTTGTTTCTTAATCTTGACTGATTG-GAGAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="17217" PGL_stop="8518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17217" e_stop="16984"/>
            <exon e_start="15389" e_stop="15336"/>
            <exon e_start="15148" e_stop="15135"/>
            <exon e_start="13885" e_stop="13740"/>
            <exon e_start="13130" e_stop="13095"/>
            <exon e_start="11131" e_stop="11091"/>
            <exon e_start="10553" e_stop="10452"/>
            <exon e_start="9760" e_stop="9681"/>
            <exon e_start="8664" e_stop="8518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.647" e_score="0.970"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.981"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.968" e_score="0.986"/>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="0.971"/>
          <exon-intron don_prob="0.972" acc_prob="0.951" e_score="0.975"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="17217" e_stop="16984" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.647">
            <gDNA_intron_boundary i_start="16983" i_stop="15390" i_length="1594"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="15389" e_stop="15336" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15335" i_stop="15149" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15148" e_stop="15135" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15134" i_stop="13886" i_length="1249"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="13885" e_stop="13740" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13739" i_stop="13131" i_length="609"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13130" e_stop="13095" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13094" i_stop="11132" i_length="1963"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11131" e_stop="11091" e_length="41"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11090" i_stop="10554" i_length="537"/>
          </intron>
          <exon e_serial="7" e_score="0.971">
            <gDNA_exon_boundary e_start="10553" e_stop="10452" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10451" i_stop="9761" i_length="691"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="9760" e_stop="9681" e_length="80"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.951">
            <gDNA_intron_boundary i_start="9680" i_stop="8665" i_length="1016"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="8664" e_stop="8518" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17217" stop="16984"/>
              <exon start="15389" stop="15336"/>
              <exon start="15148" stop="15135"/>
              <exon start="13885" stop="13740"/>
              <exon start="13130" stop="13095"/>
              <exon start="11131" stop="11091"/>
              <exon start="10553" stop="10452"/>
              <exon start="9760" stop="9681"/>
              <exon start="8664" stop="8518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g37280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTGAAACCGATAAAGAAGTGGGAAACAAATTCCTCCGTCACATACGGCCAAAGGCGGAGGAGATACTACTGGTCGGAAGTCTCGGATAAACGGAAATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTACTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAG : GTCCAAAAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTT : GGCTGGAACAAAAA : TTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTCAGCACCGGCAAAACCCAAAAGCTCAGCTG : ATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATG : TTCCAAAAGGGAAAAAGCGCAAAACTGACTCAGGCGCTGAG : AAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTGAAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAG : CTTGTGAAGCTCCCACGATCTCCTACTGTGGATGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGAT : GATGACTGATTCAGTTGGGGAGATACTGAATGGAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTTTCAGATAATGTCTCTCCATCTAGTGTATATGGTGC</gDNA_template>
            <first_frame> F  F  E  T  D  K  E  V  G  N  K  F  L  R  H  I  R  P  K  A  E  E  I  L  L  V  G  S  L  G  *  T  E  M  V  N  S  K  N  N  S  S  T  D  S  E  N  S  S  G  D  V  P  D  S  K  P  S  L  Y  F  E  G  E  K  V  L  A  Y  H  G  P  R  I  Y  E  A  K  :  V  Q  K  A  E  L  R  K  N  E  W  R  Y  F  V  H  Y  L  :  G  W  N  K  N :   W  D  E  W  V  G  A  D  R  L  M  K  H  T  E  D  N  V  L  K  Q  Q  A  L  D  K  K  Q  G  M  E  K  S  T  K  S  G  R  S  A  P  A  K  P  K  S  S  A   : D  V  K  L  D  K  E  E  T  K  S  N   : V  P  K  G  K  K  R  K  T  D  S  G  A  E  :  K  G  N  V  S  V  E  K  L  V  K  I  Q  I  P  S  T  L  K  K  Q  L  V  D  D  W  E  F  I  M  H  Q  N  K  :  L  V  K  L  P  R  S  P  T  V  D  D  I  L  T  K  Y  L  E  Y  R  S  K  K  D  G  M :   M  T  D  S  V  G  E  I  L  N  G  I  R  C  Y  F  D  K  A  L  P  A  L  L  L  Y  K  K  E  R  Q  Q  Y  H  E  A  V  S  D  N  V  S  P  S  S  V  Y  G   </first_frame>
            <second_frame>  F  L  K  P  I  K  K  W  E  T  N  S  S  V  T  Y  G  Q  R  R  R  R  Y  Y  W  S  E  V  S  D  K  R  K  W  L  T  Q  K  T  T  L  L  P  T  A  K  I  P  P  V  T  F  P  T  L  N  L  V  S  T  L  K  A  R  R  F  S  L  I  M  A  L  A  S  T  K  Q  R :   S  K  K  Q  S  C  G  R  T  N  G  D  T  S  F  I  T  L :   A  G  T  K   : I  G  M  N  G  *  E  L  T  A  *  *  S  T  Q  K  T  T  S  *  S  S  R  P  W  T  R  S  R  A  W  R  K  V  L  N  L  D  V  Q  H  R  Q  N  P  K  A  Q  L  :  M  L  N  W  T  R  K  K  L  R  A  M  :  F  Q  K  G  K  S  A  K  L  T  Q  A  L  R :   R  A  M  Y  L  *  R  N  L  *  R  F  R  F  H  L  L  *  R  S  N  *  L  M  I  G  S  S  S  C  T  R  I  S :   L  *  S  S  H  D  L  L  L  W  M  I  Y  *  P  S  T  L  N  T  D  P  K  R  T  G   : *  *  L  I  Q  L  G  R  Y  *  M  E  F  D  A  I  L  T  K  H  C  L  H  F  Y  C  T  R  R  S  A  N  S  I  M  K  Q  F  Q  I  M  S  L  H  L  V  Y  M  V  </second_frame>
            <third_frame>   F  *  N  R  *  R  S  G  K  Q  I  P  P  S  H  T  A  K  G  G  G  D  T  T  G  R  K  S  R  I  N  G  N  G  *  L  K  K  Q  L  F  Y  R  Q  R  K  F  L  R  *  R  S  R  L  *  T  *  S  L  L  *  R  R  E  G  S  R  L  S  W  P  S  H  L  R  S  K   : G  P  K  S  R  A  A  E  E  R  M  E  I  L  R  S  L  P   : W  L  E  Q  K  :  L  G  *  M  G  R  S  *  P  L  D  E  A  H  R  R  Q  R  L  E  A  A  G  P  G  Q  E  A  G  H  G  E  K  Y  *  I  W  T  F  S  T  G  K  T  Q  K  L  S  * :   C  *  T  G  Q  G  R  N  *  E  Q  C :   S  K  R  E  K  A  Q  N  *  L  R  R  *   : E  G  Q  C  I  C  R  E  T  C  E  D  S  D  S  I  Y  F  E  E  A  T  S  *  *  L  G  V  H  H  A  P  E  *   : A  C  E  A  P  T  I  S  Y  C  G  *  Y  I  D  Q  V  P  *  I  P  I  Q  K  G  R  D  :  D  D  *  F  S  W  G  D  T  E  W  N  S  M  L  F  *  Q  S  T  A  C  T  F  I  V  Q  E  G  A  P  T  V  S  *  S  S  F  R  *  C  L  S  I  *  C  I  W  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17124" stop="16984"/>
                    <exon start="15389" stop="15336"/>
                    <exon start="15148" stop="15135"/>
                    <exon start="13885" stop="13740"/>
                    <exon start="13130" stop="13095"/>
                    <exon start="11131" stop="11091"/>
                    <exon start="10553" stop="10452"/>
                    <exon start="9760" stop="9681"/>
                    <exon start="8664" stop="8520"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEMVNSKNNSSTDSENSSGDVPDSKPSLYFEGEKVLAYHGPRIYEAKVQKAELRKNEWRYFVHYLGWNKNWDEWVGADRLMKHTEDNVLKQQALDKKQGMEKSTKSGRSAPAKPKSSADVKLDKEETKSNVPKGKKRKTDSGAEKGNVSVEKLVKIQIPSTLKKQLVDDWEFIMHQNKLVKLPRSPTVDDILTKYLEYRSKKDGMMTDSVGEILNGIRCYFDKALPALLLYKKERQQYHEAVSDNVSPSSVYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="37519" PGL_stop="38495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37519" e_stop="37802"/>
            <exon e_start="37875" e_stop="37976"/>
            <exon e_start="38124" e_stop="38273"/>
            <exon e_start="38360" e_stop="38495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="0.937"/>
          <exon-intron don_prob="0.689" acc_prob="0.957" e_score="0.922"/>
          <exon-intron don_prob="0.839" acc_prob="0.999" e_score="0.920"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="37519" e_stop="37802" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="37803" i_stop="37874" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="37875" e_stop="37976" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.689" acc_prob="0.957">
            <gDNA_intron_boundary i_start="37977" i_stop="38123" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="0.920">
            <gDNA_exon_boundary e_start="38124" e_stop="38273" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.839" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38274" i_stop="38359" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.934">
            <gDNA_exon_boundary e_start="38360" e_stop="38495" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37519" stop="37802"/>
              <exon start="37875" stop="37976"/>
              <exon start="38124" stop="38273"/>
              <exon start="38360" stop="38495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g37300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTTACTAATTTCAGTAGGCGTTGACGACCCACACCGTTTACACCTCTGACAATATCATGGAACGGCATCTAACGGTGATTAAACCTAGCCGGAGCGACGAAGTTTTAGACGAAGATGAGCAGCTGCGAATCGCCAACCAGGTCAAAGCCTTGTTCGATGCTCAAGCACCTAAAAGACTCGCCAAACCAAATCGAAGCGAACCTGATTCAGTCATCCCCAATTCCCCTTTAGAAGATTTCCCTATTCCAGAACTTGACAATCTCCGATCTCTTCAATCACAG : GGTGGTAGCTTTTTTCCGGAAACTAATTGCTCGGAGCAAGACGAGTCCGTGGAAACTCAGTATTACAATGAGTTGGTTTCCATTGACAAACAGCATCACACG : ACTGGAAGTGGGTTCATAAAGGTGGTCAATCAAACGAATGGAAACATTTACGATCTTCAGTTGAATGGTGGTTATGAGAATGGTAGAGCCAAAGAGTTCAAAACTAATCCGGCGACAAACGACTGGATTCCGAGTAAAGATGATTATCAG : GTTGGATTCACCTCCTCAAAACCCAGCCGGAGCGAAGGTGATTAGATCGAAAGTGAAGAAAGCAATCAGCTGGTGAAGGTGGTTTGTTCTGTTCTCTTGAATTCGTTTGTTTATCTTGACTGATTGAGAGAGAAAA</gDNA_template>
            <first_frame> E  F  T  N  F  S  R  R  *  R  P  T  P  F  T  P  L  T  I  S  W  N  G  I  *  R  *  L  N  L  A  G  A  T  K  F  *  T  K  M  S  S  C  E  S  P  T  R  S  K  P  C  S  M  L  K  H  L  K  D  S  P  N  Q  I  E  A  N  L  I  Q  S  S  P  I  P  L  *  K  I  S  L  F  Q  N  L  T  I  S  D  L  F  N  H  R :   V  V  A  F  F  R  K  L  I  A  R  S  K  T  S  P  W  K  L  S  I  T  M  S  W  F  P  L  T  N  S  I  T  R :   L  E  V  G  S  *  R  W  S  I  K  R  M  E  T  F  T  I  F  S  *  M  V  V  M  R  M  V  E  P  K  S  S  K  L  I  R  R  Q  T  T  G  F  R  V  K  M  I  I  R :   L  D  S  P  P  Q  N  P  A  G  A  K  V  I  R  S  K  V  K  K  A  I  S  W  *  R  W  F  V  L  F  S  *  I  R  L  F  I  L  T  D  *  E  R  K </first_frame>
            <second_frame>  N  L  L  I  S  V  G  V  D  D  P  H  R  L  H  L  *  Q  Y  H  G  T  A  S  N  G  D  *  T  *  P  E  R  R  S  F  R  R  R  *  A  A  A  N  R  Q  P  G  Q  S  L  V  R  C  S  S  T  *  K  T  R  Q  T  K  S  K  R  T  *  F  S  H  P  Q  F  P  F  R  R  F  P  Y  S  R  T  *  Q  S  P  I  S  S  I  T   : G  W  *  L  F  S  G  N  *  L  L  G  A  R  R  V  R  G  N  S  V  L  Q  *  V  G  F  H  *  Q  T  A  S  H   : D  W  K  W  V  H  K  G  G  Q  S  N  E  W  K  H  L  R  S  S  V  E  W  W  L  *  E  W  *  S  Q  R  V  Q  N  *  S  G  D  K  R  L  D  S  E  *  R  *  L  S   : G  W  I  H  L  L  K  T  Q  P  E  R  R  *  L  D  R  K  *  R  K  Q  S  A  G  E  G  G  L  F  C  S  L  E  F  V  C  L  S  *  L  I  E  R  E   </second_frame>
            <third_frame>   I  Y  *  F  Q  *  A  L  T  T  H  T  V  Y  T  S  D  N  I  M  E  R  H  L  T  V  I  K  P  S  R  S  D  E  V  L  D  E  D  E  Q  L  R  I  A  N  Q  V  K  A  L  F  D  A  Q  A  P  K  R  L  A  K  P  N  R  S  E  P  D  S  V  I  P  N  S  P  L  E  D  F  P  I  P  E  L  D  N  L  R  S  L  Q  S  Q  :  G  G  S  F  F  P  E  T  N  C  S  E  Q  D  E  S  V  E  T  Q  Y  Y  N  E  L  V  S  I  D  K  Q  H  H  T  :  T  G  S  G  F  I  K  V  V  N  Q  T  N  G  N  I  Y  D  L  Q  L  N  G  G  Y  E  N  G  R  A  K  E  F  K  T  N  P  A  T  N  D  W  I  P  S  K  D  D  Y  Q  :  V  G  F  T  S  S  K  P  S  R  S  E  G  D  *  I  E  S  E  E  S  N  Q  L  V  K  V  V  C  S  V  L  L  N  S  F  V  Y  L  D  *  L  R  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0017H17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37539" stop="37802"/>
                    <exon start="37875" stop="37976"/>
                    <exon start="38124" stop="38273"/>
                    <exon start="38360" stop="38404"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALTTHTVYTSDNIMERHLTVIKPSRSDEVLDEDEQLRIANQVKALFDAQAPKRLAKPNRSEPDSVIPNSPLEDFPIPELDNLRSLQSQGGSFFPETNCSEQDESVETQYYNELVSIDKQHHTTGSGFIKVVNQTNGNIYDLQLNGGYENGRAKEFKTNPATNDWIPSKDDYQVGFTSSKPSRSEGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 4560 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 7056 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:41:16
-->
