<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:28:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564735" ref_strand="+" ref_description="SGN-U564735 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147783627|emb|CAN68148.1| (e_value=7e-20) hypothetical; ">
      <seq>aaaactgcagcttatctgataaacagaatgcctacaactgtattacaaggaagtcaccatatgaacttctttatgaacgagcacctaatctagaacatttgagggtgtttggatgtttatgttttgtatcagttttgccaagaagagataaatttgctccaagagcaacaagatcagtcttcattgggtactcagagacacaaaaaggatataaagtcatggatttggagactcatgtcatatcagtgagcagggaaattacattcatggaagattcatttcctttcaaagatgttatcacacgaagaagtatcatctgctcccatacaaatggatatgtttgatcatgcagatgataatataccttcaaattctgtagattctattgaagatcatgttgaggagatcaatcttatacaatcagaagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="5713" stop="4666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5413" g_stop="4966" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-U564735" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5413" e_stop="4966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGCAGCTTATCTGATAAACAGAATGCCTACAACTGTATTACAAGGGAAGTCACCATATGAACTTCTTTATAAACGAGCACCTAATCTAGAACATTTGAGGGTGTTTGGATGTTTATGTTTTGTATCAGTTTTGCCAAGAAGAGATAAATTTGCTCCAAGAGCAACAAGATCAGTCTTCATTGGGTACTCAGAGACACAAAAAGGATATAAAGTCATGGATTTGGAGACTCATGTCATATCAGTGAGCAGGGAGGTTACATTCATGGAAGATTCATTTCCTTTCAAAGATGTTATCACAAAAGAAGTATCATCAACCACAGATTATACTGCTCCTATACAAATGGATATGTTTGATCATGCAGATGATAATATACCTTCAAATCCTGTAGATTCTATTGAAGATCATGTTGAGGAGATCAATCCTATACAATCAGAAGTTGATG</genome_strand>
        <mrna_strand>AAAACTGCAGCTTATCTGATAAACAGAATGCCTACAACTGTATTACAA-GGAAGTCACCATATGAACTTCTTTATGAACGAGCACCTAATCTAGAACATTTGAGGGTGTTTGGATGTTTATGTTTTGTATCAGTTTTGCCAAGAAGAGATAAATTTGCTCCAAGAGCAACAAGATCAGTCTTCATTGGGTACTCAGAGACACAAAAAGGATATAAAGTCATGGATTTGGAGACTCATGTCATATCAGTGAGCAGGGAAATTACATTCATGGAAGATTCATTTCCTTTCAAAGATGTTATCAC--ACGAAG--------A--A-GTATCAT-CTGCTCCCATACAAATGGATATGTTTGATCATGCAGATGATAATATACCTTCAAATTCTGTAGATTCTATTGAAGATCATGTTGAGGAGATCAATCTTATACAATCAGAAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572052" ref_strand="+" ref_description="SGN-U572052 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147811069|emb|CAN70165.1| (e_value=2e-17) hypothetical; (*ATH) AT1G11350.1 (e_value=2e-18) | Symbol: None | S-locus lectin protein kinase family protein, contains Serine/Threonine protein kinases active-site signature, PROSITE:PS00108 | chr1:3817591-3820805 REVERSE | Aliases: T23J18.2, T23J18_2; (*SWP) sp|P17840|SLSG3_BRAOL (e_value=4e-11) S-locus-specific glycoprotein S13 (Fragment) OS=Brassica oleracea GN=SLSG; ">
      <seq>agaaccttcttctttctttttattttctataccctttaccattcttctttctaaaatcccttctccattcttgaattgtggcaccatttccaaattcttgaatggccactggatttaccttcccccccttttggttcctgtttcttttcattctttcttgtttctcctcattctgtttaggtggtgacagagttacactaggagagatttataaagatggtgataaccttacttctaaaggaggggattttgtgttggggttctttagtcctgcaggtactagtaaaaggtatcttggtatatggtatgttgatataccagtaaagacatatatatgggttgccaacaggaacaagcctgttcatgataaaaatggtaccttttcaattgatacaattgggaatttggttgttaaagatggaaatggagatttactatggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="18347" stop="19387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18647" g_stop="19087" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U572052" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18647" e_stop="19087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCTTCTTCTTTCT-TTTATTTTCTATACCCTTTACCATTCTTCTTTCTAAAATCCCTTCTCCATTCTTGAATTGTGGCACCATTTCCAAATTCTTGAATGGCCACTGGATTTACCTTCCCCCCCTTTTGGTTCCTGTTTCTTTTCATTCTTTCTTGTTTCTCCTCATTCTGTTTAGGTGGTGACAGAGTTACACTAGGAGAGATTTATAAAGATGGTGATAACCTTACTTCTAAAGGAGGGGATTTTGTGTTGGGGTTCTTTAGTCCTGCAGGTACTAGTAAAAGGTATCTTGGTATATGGTATGTTGATATACCAGTAAAGACATATATATGGGTTGCCAACAGGAACAAGCTTGTTCATGATAAAAATGGTACCTTTTCAATTGATACAATTGGGAATTTGGTTGTTAAAGATGGAAATGGAGATTTACTATGGTC</genome_strand>
        <mrna_strand>AGAACCTTCTTCTTTCTTTTTATTTTCTATACCCTTTACCATTCTTCTTTCTAAAATCCCTTCTCCATTCTTGAATTGTGGCACCATTTCCAAATTCTTGAATGGCCACTGGATTTACCTTCCCCCCCTTTTGGTTCCTGTTTCTTTTCATTCTTTCTTGTTTCTCCTCATTCTGTTTAGGTGGTGACAGAGTTACACTAGGAGAGATTTATAAAGATGGTGATAACCTTACTTCTAAAGGAGGGGATTTTGTGTTGGGGTTCTTTAGTCCTGCAGGTACTAGTAAAAGGTATCTTGGTATATGGTATGTTGATATACCAGTAAAGACATATATATGGGTTGCCAACAGGAACAAGCCTGTTCATGATAAAAATGGTACCTTTTCAATTGATACAATTGGGAATTTGGTTGTTAAAGATGGAAATGGAGATTTACTATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563507" ref_strand="+" ref_description="SGN-U563507 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157330317|emb|CAO45331.1| (e_value=2e-21) unnamed; (*ATH) AT4G21390.1 (e_value=2e-20)  Symbol: None | S-locus lectin protein kinase family protein, contains Pfam profiles: PF00954 S-locus glycoprotein family, PF00069 protein kinase domain, PF01453 lectin (probable mannose binding) | chr4:11394368-11397594 REVERSE | Aliases: T6K22.120,... ; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=7e-13) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10; ">
      <seq>tggacctggtggatcgttcaatttgggatggttgtcaacacaatgaagcattgagatgtatacacttggcattgctttgtgttcaagatttggcggctcacagaccaaacatgtcttctgtggttctgatgctggaaactgacaatgtaaggttgcccttgcctaggcaacctacctatacttcaatgagaagatctgtggatgaagatatatggcatgggaatcaggatttaacatcttccaacaatgtcacagttagtgtactaataggtagatgattggttaatgcttgttccttcttacatacctgcttcatttgaagagaatgggatcaagtagtgtaactatgtaaagttatagttggaactatgttcataattttttgttagctaggtaaactttcgcacatcatgtgtattgtaattagaaggtggttcagctctgcaagctgaaagagagatatgtcacaaccttgttcaatcggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="21748" stop="22833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22048" g_stop="22534" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U563507" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22048" e_stop="22534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCGGTAT</genome_strand>
        <mrna_strand>TGGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567163" ref_strand="+" ref_description="SGN-U567163 Tomato 200607#2 [3 ESTs aligned] (*ATH) AT1G11300.1 (e_value=6e-11) | Symbol: None | S-locus lectin protein kinase family protein, contains protein kinase domain, Pfam:PF00069; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr1:3794389-3800719 FORWARD | Aliases: T28P6.6, T28P6_6; ">
      <seq>catggaaaacccccattttttcaaccctaaaaacccgtttcgtcttactgttcgattctcctcttttccactgttcccagcagaataggactcaattgctcaaaattggttaatggtgtttcgtgtagtaccgttggctctgggaatttggtgagatcgattaaaagatcaataaaatatcccccattcaagctgcacttccaacaagtggctcagagttggcaagttttgccaggaagtttattgtagccctccttcaccgtccagttccagtttggcacctgtactcgaagctataatcagatcctatcttaccaaaccccgaagctataacggacagaagagaaaaggagccagaagcttcagtctgggtgattcatgctacatttcaaaagactacacagtggaaagtttatggattggtaatttaaagaaagaagatccaattgaacttccactgattgaatttgaggtaattgcctcagcaacaaacaacttcaatgaagaaaacaaactcggggaaggaggttttggtccagttttcaagggaaagctaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="23580" stop="27218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23879" g_stop="24213" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24214" i_stop="26702" i_length="2489">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26703" g_stop="26914" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="547" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26915" i_stop="27067" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27068" g_stop="27080" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="560" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U567163" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23879" e_stop="24213"/>
          <exon e_start="26703" e_stop="26914"/>
          <exon e_start="27068" e_stop="27080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACGGTAAGTATGCCTACCATACAATGCATAATAGTTTTTATTATGTACTTTGAGAGGATTGTTGGACTCATAATTACTTTGACATATTCTAAAACAATAGTTCGGAGCGATCAAAAGGATATAGTGGAAGTAATCTTTAATTTTCATCGTTAGATATTTTTCTAAAAGAGGTGTGTTAAACCCAAACAAGTTAAGAGAATCAAACAATTCTTTCTAATGTTTACCGCCTTAAAAACTTGTACTATGTACAAATTTATATAATACCTTTTCATTTTAATTATAATAATCTTCAAAAAGAAAATACTGATACCCCTGTTTTCCAAATCCTATAAAAATTAAGCAAGTTAATTTTCATACCGAATCCGACTATTCTTTTTAAGAAAAAACAAGTATTTCAAGTTCCATTTTTTCTTCTTCTTCTTAATTATTGTTTTGAAGATAACATCTTTATTCCCAGATGTGGACTTTAGTGATCTTTAGTCCAAATGACCTCAGATCAAGTAAGACAAGTTATAGTGTCTTTACTCCCAACCCTGCATAGGCTAAGATAAATTTGGCTTCAAACATGTAGCATATTATTATTAGAGAAAGGAAAAAACAAAAAACCAAATCATTGTCCAAAAATGTTCTGAATAGTTTTTTGGACATTCTAATAGACTTGACACATTTCTAAGACCTAACTTGTCACCAAGTTTGAATCACTTGGAGAATTCCAACTATGTTCATTCATGTTTCAATTCCCTTTATTTGGTTATTGGAAGTTGCGCGGTGACTCTTTTAATTGTTCCTTGATGTTTGTTATGATACAAGTCCATTTAAGAAAATGGGATTCAGACAAGCCTGGAAAGTTCTTTTGATCTGTCTAATTTCTTGTTATATCATTCAAACATATTACTGTAATGCATCAGACACCATTCAGCAATCCTGGAAACTTTTAGTAGGAGAAACATTAACATCTGCTAGTCAAGTTTTTGAATTTGGATTCTTTACTCCAGCCAATTCCGATAAAAGGTACCTGGGGATATGGTTTAAAAATATCCCTCCTATTAAAGTTGTGTGGATTGCAAACAGAGAAAGTCCACTTAAAGTTTCTGATTCTGCTGCGAGTCTATCAATTAGCGAAAATGGAAACTTGGTGCTTCTTGATGGTACACAGACTGTTATCTGGTCAAGCAATGTGTCTATCTCTTCTAATAAAACAGTTGCTGTTGTTCTCCTGGACAGTGGGAATTTGGTGCTTAAAGATAATGTCTCGGGACAAACCTTCTGGGAGAGTTTCGATTATCCTTGTGATACTTTCTTGCCAGGAATGAAAATAGGTTTTAACAGTAAAACCGGGGAGAAATGGCTCTTGTCTTCTTGGCAGAAGGAAAATGACCCCTCACCCGGAAATTTTTCTATAGGGATCTCGGAGCAACTTTCACCTCAGTTTTTTGTATGGAACAAATTCACTCCTTACTACAGAACCGGGGAGTGGAATGGACTGAAGTTCATTGGTTTGCCTTGTATAGATTCAGCAGCCTATATAATTCAGTTTGTTTTTCAGCAAGACTTTCAAGAGGGAACCACATATTTCACCTTTCTTCCAAATACTTCATTCCTAAATTTCGTGGAGCTTCAGTCTACGGGATCTGTTCAAGTTGTTCAGTGGACCAATGGAGATCCAGCTTGGGAAATTTATGCTACAATGGTACGTGCACCATGTGATATATATAACACATGTGGACCTTCAGCAGTCTGTAGCAAGCATAACTTCCCAATTTGCAGCTGCTTAAGAGGGTTCGTGCCACAGTCTGGTGATGAATGGAGCAAAGGAAACTGGACAGGTGGTTGTGTGAGACGAACTGAATTACTCTGTCAGCAAAAAGGAAATACTCTATCTCCAGGGGTTGGACTGCAGGACAGATTTTTGAAGCTTAGCGGACTGAAACTGCCTGATCTTGCTGCTATTTTTCGCCTTGACAGTGCAAGTGAATGTGAAAAATTGTGCTTAAACAATTGTTCTTGCACTGCTTATGCTTATGTGGCAGGAATTAGGTGTATGGTGTGGTCTGGTGATCTTTTAGATATGCAGGATTACTCGTATTCAGGGGAAGATCTTTTCCTTCGGCTTGCTTACTCAGAGTTAGGTAACCACTACATTGATTTGGTTTACACTGACTTTACGATCCCAGGCCTCACTTGTCGTTACTAACTTTACGATGTAATCCATCTACTGAAGTAGTTTATTAAAATGTTTTTACAGTTTTTCCAGGTAAGCGGAAGTTTAAAAGAACACTAATCATATGTTCTGCAGTATTTTCCTGTCTCTTTTCTGGTTTTGCTCTATTTTGTTTGCTCAAGCACAAGATTCATCAAACAGGTAACAATATATGACCTCCCTAAAGCTAACAAGTTGAAAAATACATGCAGCAAATCAAACTACCTTAATGGTTTTTTTGACACAACGGACGTCTAGCCTGATCTTTAGATATTTTACTTCGTCTTAACAGGACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTTTCAAGGTAACTACACTTTTGTTCAAGCATTTAATCGAATATGTGATGACACACAAATCCATCATGGAATTTGCATTATTTTTTATTTGTTTTTTAAAATTATGAATTGTAAAATATGTATTCTGATCATTGGACTTTTAATTGGCGGACTCTGCACAGGGAAAGCTAAAAG</genome_strand>
        <mrna_strand>CATGGAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTTTCAAG.........................................................................................................................................................GGAAAGCTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604064" ref_strand="+" ref_description="SGN-U604064 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157340230|emb|CAO45907.1| (e_value=1e-12) unnamed; (*ATH) AT1G61390.1 (e_value=8e-13) | Symbol: None | S-locus protein kinase, putative, contains protein kinase domain, Pfam:PF00069; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr1:22654003-22657304 REVERSE | Aliases: T1F9.12, T1F9_12; ">
      <seq>aatgacttgatttttgtacttgattaaaaacttttaagaatgtacaatagcatgttctatcgtccttgagacaacgatgcactaaactcattgacagaacatctttcgttatcttttgctgatccatcaagatccaagtatgtttcaaacttaaatgtgggttgtttaggacttgagcatttcatttcactgttgagcatgagaattatgtcagccatagtaggacggtccctaggatgctcttgaacacaaagaaggccaacgtgtacgcatcgcggtatctcttctggaaaaaatgaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="28718" stop="27814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28418" g_stop="28114" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-U604064" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28418" e_stop="28114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACTTGATTTTTGTACTTGATTAAAAACTTTTAAGAATGTACAATAGCATGTTCTATCGTCCTTGAGACAACGATGCACTAAACTCATTGACAGAACATCTTTCGTTATCTTTTGCTGATCCATCAAGATCCAAGTATGTTTCAAACTTAAATGTGGGTTGTTTAGGACTTGAGCATTTCATTTCACTGTTGAGCATGAGAATTATGTCAGCCATAGTAGGACGGTCCCTAGGATGCTCTTGAACACAGAGAAGGCCAACGTGTAGGCATCGCGGTATCTCTTCTGGAGAAAATGAGTTGAT</genome_strand>
        <mrna_strand>AATGACTTGATTTTTGTACTTGATTAAAAACTTTTAAGAATGTACAATAGCATGTTCTATCGTCCTTGAGACAACGATGCACTAAACTCATTGACAGAACATCTTTCGTTATCTTTTGCTGATCCATCAAGATCCAAGTATGTTTCAAACTTAAATGTGGGTTGTTTAGGACTTGAGCATTTCATTTCACTGTTGAGCATGAGAATTATGTCAGCCATAGTAGGACGGTCCCTAGGATGCTCTTGAACACAAAGAAGGCCAACGTGTACGCATCGCGGTATCTCTTCTGGAAAAAATGAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577144" ref_strand="+" ref_description="SGN-U577144 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|1272347|gb|AAA97902.1| (e_value=2e-63) secreted glycoprotein 2; (*ATH) AT4G21380.1 (e_value=1e-48) | Symbol: None | S-locus protein kinase, putative (ARK3), identical to PIR:T05180:T05180 S-receptor kinase ARK3 precursor - (Arabidopsis thaliana) | chr4:11388936-11393237 REVERSE | Aliases: T6K22.110, T6K22_110; (*SWP) sp|P07761|SLSG6_BRAOL (e_value=5e-45) S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG; ">
      <seq>atcttccttccttccctcttcctatcaaacaagagaacaagtacaccaacaaatgtctcaaacaccaacactgcagcaaaacaaaatatttttttcttaaattacacaatgagaaacaccaaagattactactttcaccaattcttgttcttgattttgatttctcaatttcttcatccaattcttgctatacccactgatacaatcaccccaacacagtctttaaccaaagatcaaaccttagtatcttccgatcaactctttgaattaggctttttctctccaggcggtgcaaattcagacaaatggtatatcggtatttggtataaagagattcaagacaggactattgtctgggttgcaaacagagctaaacccctttcagcttcatcaacatcagtcctaaaaatcacagaaattggtacccttcttctcgtcgatggccaaactgggaattccgtttggtcttccgatcaaactccggcgaccaacgtagtagcccaactacttgactccgggaactttgtcattcgaccggaaaacgatgacagggaacagagttacctatggcagagctttgattatccaacaaacactttattacctgggatgaaacttgggtgggattcaaaatccgggatgaatagaaacataacatcatggaaatcagcaattgacccagctcccggagattacactttcaagatcaacaccagtgggttcccggaaatttacttgacgaataaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="41843" stop="43192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42143" g_stop="42892" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U577144" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42143" e_stop="42892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCTTCCTTCCCTCTTCCTATCAAACAAGAGAACAAGTACACCAACAAATGTCTCAAACACCAACACTGCAGCAAAACAAAATATTTTTTTCTTAAATTACACAATGAGAAACACCAAAGATTACTACTTTCACCAATTCTTGTTCTTGATTTTGATTTCTCAATTTCTTCATCCAATTCTTGCTATACCCACTGATACAATCACCCCAACACAGTCTTTAACCAAAGATCAAACCTTAGTATCTTCCGATCAACTCTTTGAATTAGGCTTTTTCTCTCCAGGCGGTGCAAATTCAGACAAATGGTATATCGGTATTTGGTATAAAGAGATTCAAGACAGGACTATTGTCTGGGTTGCAAACAGAGCTAAACCCCTTTCAGCTTCATCAACATCAGTCCTAAAAATCACAGAAATTGGTACCCTTCTTCTCGTCGATGGCCAAACTGGGAATTCCGTTTGGTCTTCCGATCAAACTCCGGCGACCAACGTTGTAGCCCAACTACTTGACTCCGGGAACTTTGTCATTCGACCGGAAAACGATGACAGGGAACAGAGTTACCTATGGCAGAGCTTTGATTATCCAACAAACACTTTATTACCTGGGATGAAACTTGGGTGGGATTCAAAATCCGGGATGAATAGAAACATAACATCATGGAAATCAGCAATTGACCCAGCTCCCGGAGATTACACTTTCAAGATCAACACCAGTGGGTTCCCGGAAATTTACTTGACGAATAAACAA</genome_strand>
        <mrna_strand>ATCTTCCTTCCTTCCCTCTTCCTATCAAACAAGAGAACAAGTACACCAACAAATGTCTCAAACACCAACACTGCAGCAAAACAAAATATTTTTTTCTTAAATTACACAATGAGAAACACCAAAGATTACTACTTTCACCAATTCTTGTTCTTGATTTTGATTTCTCAATTTCTTCATCCAATTCTTGCTATACCCACTGATACAATCACCCCAACACAGTCTTTAACCAAAGATCAAACCTTAGTATCTTCCGATCAACTCTTTGAATTAGGCTTTTTCTCTCCAGGCGGTGCAAATTCAGACAAATGGTATATCGGTATTTGGTATAAAGAGATTCAAGACAGGACTATTGTCTGGGTTGCAAACAGAGCTAAACCCCTTTCAGCTTCATCAACATCAGTCCTAAAAATCACAGAAATTGGTACCCTTCTTCTCGTCGATGGCCAAACTGGGAATTCCGTTTGGTCTTCCGATCAAACTCCGGCGACCAACGTAGTAGCCCAACTACTTGACTCCGGGAACTTTGTCATTCGACCGGAAAACGATGACAGGGAACAGAGTTACCTATGGCAGAGCTTTGATTATCCAACAAACACTTTATTACCTGGGATGAAACTTGGGTGGGATTCAAAATCCGGGATGAATAGAAACATAACATCATGGAAATCAGCAATTGACCCAGCTCCCGGAGATTACACTTTCAAGATCAACACCAGTGGGTTCCCGGAAATTTACTTGACGAATAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575676" ref_strand="+" ref_description="SGN-U575676 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|836954|gb|AAC23542.1| (e_value=2e-63) receptor protein kinase [Ipomoea trifida]; (*ATH) AT4G21380.1 (e_value=9e-49) | Symbol: None | S-locus protein kinase, putative (ARK3), identical to PIR:T05180:T05180 S-receptor kinase ARK3 precursor - (Arabidopsis thaliana) | chr4:11388936-11393237 REVERSE | Aliases: T6K22.110, T6K22_110; (*SWP) sp|Q09092|SRK6_BRAOE (e_value=3e-44) Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6; ">
      <seq>ggcaaattggaggtgatggatctggaaatagttctcgcaagacaaaaatagttgcaatagctgctggggttacagttggtatatctcttgtgttatttggactaaccctttgcatcttatcaaagagaagaaaacatcaaagttcaatccgaactaaatccgtgaacagaggcactatcgaacgaagtcaagagcttttgatgaatgcaactattattccaagtcaaagagaattttctggtgaaacttccacggaagagtttgaattgccattgtttgattacagtaccctatctacggcaacagaaaatttttctgacgcgactaagttgggccaaggaggctttggttgtgttgatatggaagagaagatgctgatctatgaatacctggagaataaaagtgtagattcaatagtgttcaataaacagaaaagctcgctgctcgactggcaaaagcggttcaatattatttgcgggattgctcgggggcttctataccttcatcaagattcaagatttaagattatccatagagaccttaaagcaagcaatattctgcttgataaggatttgacccccaaaatatcagattctggcatggcaagaatgttcggccgagatgagactgaacgaaataccaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="45719" stop="47383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46018" g_stop="46188" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46189" i_stop="46276" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46277" g_stop="46453" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="348" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46454" i_stop="46685" i_length="232">
            <donor d_prob="0.434" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46686" g_stop="46760" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46761" i_stop="46858" i_length="98">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46859" g_stop="47083" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="648" r_length="225" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U575676" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46018" e_stop="46188"/>
          <exon e_start="46277" e_stop="46453"/>
          <exon e_start="46686" e_stop="46760"/>
          <exon e_start="46859" e_stop="47083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATTGGAGGTGAAGGATCTGGAAATAGTTCTCGCAAGACAAAAATAGTTGCAATAGCTGCTGGGGTTACAGTTGGTATAGCTCTTGTGTTATTTGGACTAACCCTTTGCATCTTATCAAAGAGAAGAAAACATCAAAGTTCAATCCGAACTAAATCCGTGAACAGAGGTATTATATGAATCTATCCTGATTAATAAGATTGTCTAATATAAAATGCTTCATTTTCTCATGAATGTTTCTCATGATCCTAAACCAGGCACTAGCGAACGAAGTCAAGAGCTTTTGATGAATGCAACTATTATTCCAAGTAAAAGAGAATTTTCTGGTGAAACTTCCACGGAAGAGTTTGAATTGCCATTGTTTGATTACAGTACCCTAGCTACGGCAACAGAAAATTTTTCTGACGCGACTAAGTTGGGCCAAGGTGGCTTTGGTTGTGTTTACAAGGTAAATCTCAGTTATATGTAAACCATAGTGATATTATAAGAAGAAAAAGTTATCGACAAACTCAATAATATAATCTTTTGATCAGGCAATGCTGGTTGGTCAAGAAGTAGCAGTCAAAAGGCTCTCGAAGAATTCTGGACAAGGAGTAGAGGAATTTAAAAATGAGCTAAGATTGATTGCCAGGCTTCAACACAGAAATCTAGTCCGGCTTCTTGGCTGTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCAGTAAGGCTTTTTCATTATATCGTCAAGAGAGTAGTGTTTCACATCATTTACTTAGATGCTCATATAATTTGTGACTCACATTTGAATATGCTCCTCAGATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAG</genome_strand>
        <mrna_strand>GGCAAATTGGAGGTGATGGATCTGGAAATAGTTCTCGCAAGACAAAAATAGTTGCAATAGCTGCTGGGGTTACAGTTGGTATATCTCTTGTGTTATTTGGACTAACCCTTTGCATCTTATCAAAGAGAAGAAAACATCAAAGTTCAATCCGAACTAAATCCGTGAACAGAG........................................................................................GCACTATCGAACGAAGTCAAGAGCTTTTGATGAATGCAACTATTATTCCAAGTCAAAGAGAATTTTCTGGTGAAACTTCCACGGAAGAGTTTGAATTGCCATTGTTTGATTACAGTACCCTATCTACGGCAACAGAAAATTTTTCTGACGCGACTAAGTTGGGCCAAGGAGGCTTTG........................................................................................................................................................................................................................................GTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTGTAGATTCAATAGTGTTCA..................................................................................................ATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGCGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAAGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTCTGGCATGGCAAGAATGTTCGGCCGAGATGAGACTGAACGAAATACCAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575675" ref_strand="+" ref_description="SGN-U575675 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|836954|gb|AAC23542.1| (e_value=5e-100) receptor protein kinase [Ipomoea trifida]; (*ATH) AT1G65790.1 (e_value=5e-85) | Symbol: None | S-receptor protein kinase, putative, similar to similar to PIR:T05180:T05180 S-receptor kinase ARK3 precursor - (Arabidopsis thaliana) | chr1:24472595-24475992 FORWARD | Aliases: F1E22.15, F1E22_15; (*SWP) sp|Q09092|SRK6_BRAOE (e_value=6e-71) Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6; ">
      <seq>cagggcttctataccttcatcaagattcaagatttaggattatccatagagaccttaaagcaagcaatattctgcttgataaggatttgacccccaaaatatcagattttggcatggcaagaatttttggcggagatgagactgaaggaaataccaaaagagtagttggaacctatggttacatgtctccggaatatgcaatggatggcctcttctctgttaagtccgatgttttcagctttggggttttggtgttagaaatagtaaccggaaagaagaacaggggattctattatcaaaataaccaactcaaccttcttggacatgcgtggagactctggaaagaagggagcggctcagagctactagatccatcttttggagaatctttttctccatctgaagtaatgagatgcatacaggttggactgttgtgtgtccaggaacaagcagaagaccgaccaaacatggccactgtggttttgatgctaggtagcgaaagtgcatcacttcctcagcctaaaaacccaggattttgccttggaagaagacccgttgattctgattcatattcgactaattatgaagaaacttgcactgtcaatcaagttacagttaccatgatagatccccggtagttgatggtatcgccctcagaaagtgtgtatattactacaagaggttcacaattttctcttgtatactatctcagtttttgtttttgggtaagttttgtgaaagataaagagcataattaggtcttttttttctcattacatacaatttgtgaattcaaaatcttgtcttttttcatcatcaatgtaataggccaatcattccttttccatatccttctaaattactgtgtcattattgatgtgaatcaaaaggaatatcttgtgcattcatcttcatttctactaaataaaatttaaacttttggtcttttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="46624" stop="48347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46922" g_stop="47096" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47183" g_stop="47333" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="326" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47424" g_stop="48046" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="950" r_length="624" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U575675" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46922" e_stop="47096"/>
          <exon e_start="47183" e_stop="47333"/>
          <exon e_start="47424" e_stop="48046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTAGTAAGCACACGACATAATTTCTTCACATTTTTCATAGAACCTTTAAAGCTGTTTCTAAATCTGTTTTTTTTTTTGTTTTGATGTAGTGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACATGTAAGTTCACAGATCATGTGTTAGCTTCATTATTGGCAACACATTCATCATTTGATTAATTTCTGATAAAGAAAGTAATCGACTATGCAGGCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTC-TTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTC</genome_strand>
        <mrna_strand>CAGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA......................................................................................TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT..........................................................................................GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGAATCAAAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575326" ref_strand="+" ref_description="SGN-U575326 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157355875|emb|CAO49732.1| (e_value=4e-116) unnamed; (*ATH) AT5G38280.1 (e_value=3e-84) | Symbol: None | serine/threonine protein kinase (PR5K), identical to receptor serine/threonine kinase PR5K gi:1235680:gb:AAC49208 | chr5:15310351-15314553 REVERSE | Aliases: MXA21.170, MXA21_170; (*SWP) sp|Q9SYS7|CRK39_ARATH (e_value=1e-51) Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39; ">
      <seq>cattcataatactaatattgaagtctcaattcttttcatcacttggaaagagtaggaaagaaaagaaaaagaatcaagagagtactaatgtatatgtgtaggggaaccattctgcttaaatgttttacattaatcatctttctgcaaacatgcaatgctaggaaaagcaaacactaccactgtcctccttctgcttgtggccatatccgtaacataagcaacccttttcgcttaaacactgatccaaaagattgccgttatccaggatatgaattaacttgtgaaggtaaccaaacacttatgtggttattctctgtgaagttgcacgttcaaggcatcaactatgataacaagacaattcgcctggtagatccaactttacaaacacaagatgatctatgctctttcggatctcagtttaacttcaacaatggctgcaaattaagcagatacacttatttaaagattggagaaacgaatgcatcagaagtcaatgatggatgcagagtacaatttataggcctgacctcatggcctaatattaaagatgcagagaacaacatttccctttctgattttcatcaagcaatcctctacggatttgagcttcgttattatatgtggagttctccacaaaaaaaaagtgatattgaacagcttttctggatcagtctgtcgatagttgagtatttcgtatttaagcaccagatttatggacgaaattggataagtaagaccgtcttcaatataattatatatgttctgctttttgataaaaaaaacattttccatcctctgatacgtgtgaaattaggaaagcaatggattcactcaccgtaatttaatttcttttatgtgttgtagttgttatttctcttttatatatactttaagttctccattgatctctcattctatttttttgcgctttaatctaaccagggaccattctgtcgctacttctgtatgtcatggttgtatttctggtgatcaaattcaaaaggaggcatttgtcgatgtatgatacgattgaagggtttttacaagcacaaaataatttcatgccaatcagatataattactcccacataaagagaatgacaagaggattcaaagagaaattaggtgagggaggttatggcagtgtatacaaaggaaagcttcaaagtggaagggatgtggcagtgaagatgttaagcaagcctaaatctggtgggcaagattttatgaatgaagtagctagcattggaaggattcatcatgtcaatgtggttggactcgtgggatattgtgttgagggaactaagcgtgctcttgtatacgacttcatgcccaatggatcactcgacaagtatattagcatcagtgaagaaggaagtcctctgttaagttggcagaggaagtatgacattattcttggagtggctcgaggaactggatatttgcatcgaggctgtgatgtacaaattttgcattttgacatcaaaccacacaacattcttttggatgagaatttcattccaaagatttctgactttgggcttgcaaaattatatccaccaggtaatagcatagtgactctcacagctgctcgaggaacgattggctatgtagctccagagttgatcagcagaagcatcggggaaatctcttacaaagctgatgtttacagctttggaatgctgctcatggaaatgctcgacttaaaaagacctgaagttgcaaatgaagagaattccagccaatattttccttattatatttacgataagttcaacaaggggaaggagattgtggtggatgaagaagcaaatgatgatgaaaagaagatggctagaaagctcgctttagttgcgttatggtgcatacaaacaaatccgatacaacgcccttcgatgagtagagtattagaaatgcttgaaggtgaagttgaagtgctagaagtacctcctcagcctcttcaatctcaaccgattgttcatcagatcatgggaagttctatgacattttcttctgattcaatggctttgttagaaaatacggctgataatctcgttgaagtagacatttcttctgattgaccatagttgatgtaatatttatgtgaaacaaatagcccagccaacaatgtttgggacaaagggtgttgttgcaattgttgtcctagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="48878" stop="52701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49178" g_stop="49608" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49609" i_stop="49728" i_length="120">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49729" g_stop="49940" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="643" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49941" i_stop="50459" i_length="519">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50460" g_stop="50480" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="664" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50481" i_stop="50565" i_length="85">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50566" g_stop="50878" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="975" r_length="311" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50879" i_stop="51206" i_length="328">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51207" g_stop="52401" g_length="1195"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="2170" r_length="1195" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U575326" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2172</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49178" e_stop="49608"/>
          <exon e_start="49729" e_stop="49940"/>
          <exon e_start="50460" e_stop="50480"/>
          <exon e_start="50566" e_stop="50878"/>
          <exon e_start="51207" e_stop="52401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATAATACTAATATTGAAGTCTCAATTCTTTTCATCACTTGGAAAGAGTAGGAAAGAAAAGAAAAAGAATCAAGAGAGTACTAATGTATATGTGTAGGGGAACCATTCTGCTTAAATGTTTTGCATTAATCATCTTTCTGCAAACATGCAATGCTAGGAAAAGCAAACACTACCACTGTCCTCCTTCTGCTTGTGGCCATATCCGTAACATAAGCAACCCTTTTCGCTTAAACACTGATCCAAAAGATTGCCGTTATCCAGGATATGAATTAACTTGTGAAGGTAACCAAACACTTATGTGGTTATTCTCTGTGAAGTTGCACGTTCAAGGCATCAACTATGATAACAAGACAATTCGCCTGGTAGATCCAACTTTACAAACACAAGATGATCTATGCTCTTTCAGATCTCAGTTTAACTTCAACAAGTACTATACTATCATTGACTCATATTATTATAGTTATGATTATACTAAAACATTTTTAGACCCAATCTTCATGTTCAACTGTCCATTTGCTGTGAATAATTCCGCATTTGTGGAAATTAGTGGCTGCAAATTAAGCAGATACACTTATTTAAAGATTGGAGAAACGAATGCATCAGAAGTCAATGATGGATGCAGAGTACAATTTATAGGCCTGACCTCATGGCCTAATATTAAAGATGCAGAGAACAACATTTCCCTTTCTGATTTTCATCAAGCAATCCTCTACGGATTTGAGCTTCGTTATTATATGTGGAGTTCTCCACAAAAAAAAAGTAAGGTCTTCAATTATATATGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGGGGTCTCGCTGCCCGGTCAGCGAGTTGGGGGGTCCAGGGGGGCGACGCGCCCCCTGGCCTGGGGTCCGGGGGGGCGGAGACGCCCCCGGCCCGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAACTGTTGTCTTGTTTTTTGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAATATATGCTCTGCTTCTTAATTTATAACATTCTTTTCCATCCTAAGATATTAGGAAAATAATGGATTCACTCACTATGATTTTATTTCTACATCTCTTTGTAGGTGATATTGAACAGCTTTTCTGTGAGTACTCAAACTTTTCTCTATATATACTTTTAATGCTCCATTTATCTCTCAGTCTAAATATTTTGCACTTTAATCTAACCAGGGATCAGTCTGTCGATAGTTGAGTATTTCGTATTTAAGCGCCAGATTTATGGACGAAATTGGATAAGTAAGACCGTCTTCAATATAATTATATATGTTCTGCTTTTTGATTAAAAAAAAACGTTTTCCATCCTCTGATACGTGTGAAATTAGGAAAGCAATGGATTCACTCACCATAATTTAATTTCTTTTATGTGTTGTAGTTGTTATTTCTCTTTTATATATACTTTAAGTTCTCCATTGATCTCTCATTCTATTTTTTTGCGCTTTAATCTAACCAGGGACCATTCTGTCGCTACTTCTGTATGTCATGGGTAAGCTCCCTTTAGCAAGCTGTATGTTATTTGAATGGGCACAATTTAACATTCCATCTCGTGAAAATAATCTAACACCAGTGAGCACAACATAAAAATTCTGAAAATAGAACCACTCGAAATATGTTATTGTTAGTAAAGTTATTAATAGCAATCAAATGAGACAGAAAGTGTTAAATTTAACTAAACTCTGAGAAAAATAGAACGGTCCGCATAAGAAAAAGACAATCTCTATGATCTATTGGCTCAAGCAGGAAATTAACATTATGGCTTCTCAAACTTGCAGCGTATTTTGGAATAAAATTTGTGATAGGCCTTCCGTTTGTAGTTGTATTTCTGGTGATCAAATTCAAAAGGAGGCATTTGTCGATGTATGATACGATTGAAGGGTTTTTACAATCACAAAATAATTTCATGCCAATCAGATATAATTACTCCCACATAAAGAGAATGACAAGAGGATTCAAAGAGAAATTAGGTGAGGGAGGTTATGGCAGTGTATACAAAGGAAAGCTTCAAAGTGGAAGGGATGTGGCAGTGAAGATGTTAAGCAAGCCTAAATCTGGTGGGCAAGATTTTATGAATGAAGTAGCTAGCATTGGAAGGATTCATCATGTCAATGTGGTTGGACTCGTGGGATATTGTGTTGAGGGAACTAAGCGTGCTCTTGTATACGACTTCATGCCCAATGGATCACTCGACAAGTATATTAGCATCAGTGAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAACTGGATATTTGCATCGAGGCTGTGATGTACAAATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCAAAATTATATCCACCAGGTAATAGCATAGTGACTCTCACAGCTGCTCGAGGAACGATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATCGGGGAAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTCATGGAAATGCTCGACTTGAAAAGACCTGAAGTTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAGATTGTGGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGCTCGCTTTAGTTGCGTTATGGTGCATACAAACAAATCCGATACAACGCCCTTCGATGAGTAGAGTATTAGAAATGCTTGAAGGTGAAGTTGAAGTGCTAGAAGTACCTCCTCAGCCTCTTCAATCTCAACCGATTGTTCATCAGATCATGGGAAGTTCTATGACATTTTCTTCTGATTCAATGGCTTTGTTAGAAAATACGGCTGATAATCTCGTTGAAGTAGACATTTCTTCTGATTGACCATAGTTGATGTAATATTTATGTGAAACAAATAGCCCAGCCAACAATGTTTGGGACAAAGGGTGTTGTTGCAATTGTTGTCCTAGTTT</genome_strand>
        <mrna_strand>CATTCATAATACTAATATTGAAGTCTCAATTCTTTTCATCACTTGGAAAGAGTAGGAAAGAAAAGAAAAAGAATCAAGAGAGTACTAATGTATATGTGTAGGGGAACCATTCTGCTTAAATGTTTTACATTAATCATCTTTCTGCAAACATGCAATGCTAGGAAAAGCAAACACTACCACTGTCCTCCTTCTGCTTGTGGCCATATCCGTAACATAAGCAACCCTTTTCGCTTAAACACTGATCCAAAAGATTGCCGTTATCCAGGATATGAATTAACTTGTGAAGGTAACCAAACACTTATGTGGTTATTCTCTGTGAAGTTGCACGTTCAAGGCATCAACTATGATAACAAGACAATTCGCCTGGTAGATCCAACTTTACAAACACAAGATGATCTATGCTCTTTCGGATCTCAGTTTAACTTCAACAA........................................................................................................................TGGCTGCAAATTAAGCAGATACACTTATTTAAAGATTGGAGAAACGAATGCATCAGAAGTCAATGATGGATGCAGAGTACAATTTATAGGCCTGACCTCATGGCCTAATATTAAAGATGCAGAGAACAACATTTCCCTTTCTGATTTTCATCAAGCAATCCTCTACGGATTTGAGCTTCGTTATTATATGTGGAGTTCTCCACAAAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTGAACAGCTTTTCT.....................................................................................GGATCAGTCTGTCGATAGTTGAGTATTTCGTATTTAAGCACCAGATTTATGGACGAAATTGGATAAGTAAGACCGTCTTCAATATAATTATATATGTTCTGCTTTTTGA-T-AAAAAAAACATTTTCCATCCTCTGATACGTGTGAAATTAGGAAAGCAATGGATTCACTCACCGTAATTTAATTTCTTTTATGTGTTGTAGTTGTTATTTCTCTTTTATATATACTTTAAGTTCTCCATTGATCTCTCATTCTATTTTTTTGCGCTTTAATCTAACCAGGGACCATTCTGTCGCTACTTCTGTATGTCATGG........................................................................................................................................................................................................................................................................................................................................TTGTATTTCTGGTGATCAAATTCAAAAGGAGGCATTTGTCGATGTATGATACGATTGAAGGGTTTTTACAAGCACAAAATAATTTCATGCCAATCAGATATAATTACTCCCACATAAAGAGAATGACAAGAGGATTCAAAGAGAAATTAGGTGAGGGAGGTTATGGCAGTGTATACAAAGGAAAGCTTCAAAGTGGAAGGGATGTGGCAGTGAAGATGTTAAGCAAGCCTAAATCTGGTGGGCAAGATTTTATGAATGAAGTAGCTAGCATTGGAAGGATTCATCATGTCAATGTGGTTGGACTCGTGGGATATTGTGTTGAGGGAACTAAGCGTGCTCTTGTATACGACTTCATGCCCAATGGATCACTCGACAAGTATATTAGCATCAGTGAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAACTGGATATTTGCATCGAGGCTGTGATGTACAAATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCAAAATTATATCCACCAGGTAATAGCATAGTGACTCTCACAGCTGCTCGAGGAACGATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATCGGGGAAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTCATGGAAATGCTCGACTTAAAAAGACCTGAAGTTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAGATTGTGGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGCTCGCTTTAGTTGCGTTATGGTGCATACAAACAAATCCGATACAACGCCCTTCGATGAGTAGAGTATTAGAAATGCTTGAAGGTGAAGTTGAAGTGCTAGAAGTACCTCCTCAGCCTCTTCAATCTCAACCGATTGTTCATCAGATCATGGGAAGTTCTATGACATTTTCTTCTGATTCAATGGCTTTGTTAGAAAATACGGCTGATAATCTCGTTGAAGTAGACATTTCTTCTGATTGACCATAGTTGATGTAATATTTATGTGAAACAAATAGCCCAGCCAACAATGTTTGGGACAAAGGGTGTTGTTGCAATTGTTGTCCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600839" ref_strand="+" ref_description="SGN-U600839 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328313|emb|CAO17800.1| (e_value=7e-76) unnamed; (*ATH) AT1G11410.1 (e_value=7e-70)  Symbol: None | S-locus protein kinase, putative, similar to receptor-like protein kinase (Arabidopsis thaliana) gi:4008008:gb:AAC95352; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr1:3841286-3844432 FORWARD | Aliases: T23J18.8, T23... ; (*SWP) sp|P17840|SLSG3_BRAOL (e_value=2e-54) S-locus-specific glycoprotein S13 (Fragment) OS=Brassica oleracea GN=SLSG; ">
      <seq>gaaacgttacatcggaatttggtataacaatgttcctgaacttactgttgtttgggttgccaacagagataaccctgttaatggcacatctgggattctcaccatcgattcaactgggaatcttgttatacgtctcgatgcggaaagaaaaactgcagcctggagaacaaatgtttcttcagctaggaaacgagcagactcgtatacagctaagctggaggattcagggaattttgtgttgtttcaagactccaaaatggatgttattgaatggcagagctttgattatcctaccaatactctgcttccttcaatgaaatatgggatagacaagagaacgggattgaaccggtttctgacatcatggaaatcgttgatcgatccaggcactggagagtatcgttacacaatggagctcaatgggacacctcaagttttcttgtacaagaactctagcaggatttggcggacaggatcctggacgggtcatggttggagtggtgtaccagaaatgagcccgcgattcatcttcagccttagttatgtagacaatgataccgaggtttccttgacatatggcatacatgacagttcaataatctcaagaatggtcctgaatgaatctgggatcgtgaaccggttaacttggcaagagagtgagcgaaagtgggtgcaattctggtctgcccctaaagacccttgtgacaattatgaacattgtggagcatttagcaattgcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="80443" stop="81787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80742" g_stop="81487" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U600839" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80742" e_stop="81487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACGTTACATCGGAATTTGGTATAACAATGTTCCTGAACTTACTGTTGTTTGGGTTGCCAACAGAGATAACCCTGTTAATGGCACATCTGGGATTCTCACCATCGATTCAACTGGGAATCTTGTTATACGTCTCGATGCGGAAAGAAAAACTGCAGCCTGGAGAACAAATGTTTCTTCAGCTAGGAAACGAGCAGACTCGTATACAGCTAAGCTGGAGGATTCAGGGAATTTTGTGTTGTTTCAAGACTCCAAAATGGATGTTATTGAATGGCAGAGCTTTGATTATCCTACCAATACTCTGCTTCCTTCAATGAAATATGGGATAGACAAGAGAACGGGATTGAACCGGTTTCTGACATCATGGAAATCGTTGATCGATCCAGGCACTGGAGAGTATCGTTACACAATGGAGCTCAATGGGACACCTCAAGTTTTCTTGTACAAGAACTCTAGCAGGATTTGGCGGACAGGATCCTGGACGGGTCATGGTTGGAGTGGTGTACCAGAAATGAGCCCGCGATTCATCTTCAGCCTTAGTTATGTAGACAATGATACCGAGGTTTCCTTGACATATGGCATACATGACAGTTCAATAATCTCAAGAATGGTCCTGAATGAATCTGGGATCGTGAACCGGTTAACTTGGCAAGAGAGTGAGCGAAAGTGGGTGCAATTCTGGTCTGCCCCTAAAGACCCTTGTGACAATTATGAACATTGTGGAGCATTTAGCAATTGGCAATCTG</genome_strand>
        <mrna_strand>GAAACGTTACATCGGAATTTGGTATAACAATGTTCCTGAACTTACTGTTGTTTGGGTTGCCAACAGAGATAACCCTGTTAATGGCACATCTGGGATTCTCACCATCGATTCAACTGGGAATCTTGTTATACGTCTCGATGCGGAAAGAAAAACTGCAGCCTGGAGAACAAATGTTTCTTCAGCTAGGAAACGAGCAGACTCGTATACAGCTAAGCTGGAGGATTCAGGGAATTTTGTGTTGTTTCAAGACTCCAAAATGGATGTTATTGAATGGCAGAGCTTTGATTATCCTACCAATACTCTGCTTCCTTCAATGAAATATGGGATAGACAAGAGAACGGGATTGAACCGGTTTCTGACATCATGGAAATCGTTGATCGATCCAGGCACTGGAGAGTATCGTTACACAATGGAGCTCAATGGGACACCTCAAGTTTTCTTGTACAAGAACTCTAGCAGGATTTGGCGGACAGGATCCTGGACGGGTCATGGTTGGAGTGGTGTACCAGAAATGAGCCCGCGATTCATCTTCAGCCTTAGTTATGTAGACAATGATACCGAGGTTTCCTTGACATATGGCATACATGACAGTTCAATAATCTCAAGAATGGTCCTGAATGAATCTGGGATCGTGAACCGGTTAACTTGGCAAGAGAGTGAGCGAAAGTGGGTGCAATTCTGGTCTGCCCCTAAAGACCCTTGTGACAATTATGAACATTGTGGAGCATTTAGCAATT-GCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578365" ref_strand="+" ref_description="SGN-U578365 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157329704|emb|CAO41596.1| (e_value=2e-63) unnamed; (*ATH) AT4G27300.1 (e_value=4e-62) | Symbol: None | S-locus protein kinase, putative, similar to receptor protein kinase (Ipomoea trifida) gi:836954:gb:AAC23542; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr4:13669314-13672354 REVERSE | Aliases: M4I22.110, M4I22_110; (*SWP) sp|Q09092|SRK6_BRAOE (e_value=4e-56) Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6; ">
      <seq>ggaatgatagggattctagtagggtctgctgcagcaataattcttgcactctctttggcatgttgtttggtgatcaatataaggggaaatgataatgaaagaagtgaaagtttagcatcctatgacggcatggaagaaagtaaacatgcagaaatcactatctttgatctaaccacaataactaatgccactgatcagttctctgatgctaacaaacttggtgaaggaggatttggtagcgtatacaagggtcacctgacagatggacaagtaatagctgtcaaaagactttcagtaacttcggggcaagggacggaggagttcaagaatgaagtcacagtaattgcaagacttcagcacagaaatttggtgaggcttttaggatgttgcgttcaacgaggagagaagatgttggtttatgaatatatgccaaacaaatccttggacagttttatttttgatctcttattcaccaactttcaaacggtgatctagataaaacaaaagggtctttgttggattggggaaaacggtttggaatcatacatgggattgcacgaggaatgttataccttcaccaagactctagactaagaattattcatagagacctaaaagcaagcaatgttttactcgatgcctccatgcaaccgaaaatatcagactttggaatggncagaatatttggaggtgaccaatggaagcaacacaaatcgagttgttggaacatatggnta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="81753" stop="83551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82052" g_stop="82142" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82143" i_stop="82331" i_length="189">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82332" g_stop="82489" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="249" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82490" i_stop="82645" i_length="156">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82646" g_stop="82856" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="460" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82857" i_stop="82978" i_length="122">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82979" g_stop="83251" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="731" r_length="271" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83252" i_stop="83350" i_length="99">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83351" g_stop="83356" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="737" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U578365" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82052" e_stop="82142"/>
          <exon e_start="82332" e_stop="82489"/>
          <exon e_start="82646" e_stop="82856"/>
          <exon e_start="82979" e_stop="83251"/>
          <exon e_start="83351" e_stop="83356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATGGTAAGGATATTATTCTATATCATAATTTAATCGAACATTATTTTCAGTATCTGTATGGCAGCAGCTATAATGGTGAAGTAACTTTAGAAACCTAGAGCTCCTTCTACCTTTCAATATCGTGCAGCAAAAAAAAAAATGGCACAACTGCAAATTTCATTTGATCCTAATCTGTGTTTGCTGATGTCACAGATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAGGTAACAACTCCCAAATATGATTAAATTCCTAGCGATCAACATTATCTTTATAGGTGGCTGCAAATACATGTAATAATAATTGTTAAACCAAGCTTTTCACCCTTAAGAAAAAGAAGAAGGTACGTGTACTAAATAATAATCTGGATTCAATATCAGGGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATGCCAAACAAATCCTTGGACAGTTTTATTTTTGGTAAGGAACATCTCCAGGACCGAAATTTCTTTCATTGACCTCCAGTCTCTACATGCTTTTACATGTTTACTGATGATTAATGATTACTGCTTTAACGTGTGTGTGTGTGTGTCCCTAAAAAGATCTCTTATTCACCAACTTTCAAACGGTGATCTAGATAAAACAAAAGGGTCTTTGTTGGATTGGGGAAAACGGTTTGGAATCATACATGGGATTGCACGAGGAATGTTATACCTTCACCAAGACTCTAGACTAAGAATTATTCATAGAGACCTAAAAGCAAGCAATGTTTTACTCGATGCCTCCATGCAACCGAAAATATCAGACTTTGGAATGGCCAGAATATTTGGAGGTGACCAAATGGAAGCAAACACAAATCGAGTTGTTGGAACATAGTAAGTATGTCAAGTTGTGTATAAACATATACAACTTTTATCAAACATGTGCATGTGATCGTTAAAATGATAAATCTTGATATTGTTTATCTATTGCAGTGGTTA</genome_strand>
        <mrna_strand>GGAATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATG.............................................................................................................................................................................................ATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAG............................................................................................................................................................GGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATGCCAAACAAATCCTTGGACAGTTTTATTTTTG..........................................................................................................................ATCTCTTATTCACCAACTTTCAAACGGTGATCTAGATAAAACAAAAGGGTCTTTGTTGGATTGGGGAAAACGGTTTGGAATCATACATGGGATTGCACGAGGAATGTTATACCTTCACCAAGACTCTAGACTAAGAATTATTCATAGAGACCTAAAAGCAAGCAATGTTTTACTCGATGCCTCCATGCAACCGAAAATATCAGACTTTGGAATGGNCAGAATATTTGGAGGTGACC-AATGGAAGC-AACACAAATCGAGTTGTTGGAACATA...................................................................................................TGGNTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600477" ref_strand="+" ref_description="SGN-U600477 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctgaatgtgaatgcgcttccattaactggcttaacacaactgacaaagggcgccatttaattcacagatggagtagaaaccctctgtgtttatgcttctttcctatcaatcctttgccacccacctacctttaagtctataacatggaccatggggaatcataagttagatagtaaagaaaaaggaattttgtatttctttcgaaatagttattgaatagttagcataagctctagcgaccatgaactgttgaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="84546" stop="83689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84246" g_stop="83989" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-U600477" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84246" e_stop="83989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATGTGAATGCGCTTCCATTAACTGCCTTAACACAACTGACAAAGGGCGCCATTTAATTCACAGATGGAGTAGAAACCCTCTGTGTTTATGCTTCTTTCCTATCAATCCTTTGCCACCCACCTACCTTTAAGTCTATAACATGGACCATGGGGAATCATAAGTTAGATAGTAAAGAAAAAGGAATTTTGTATTTCTTTCGAAATAGTTATTGAATAGTTAGCATAAGCTCTAGCGACCATGAACTGTTGAAATAG</genome_strand>
        <mrna_strand>CTGAATGTGAATGCGCTTCCATTAACTGGCTTAACACAACTGACAAAGGGCGCCATTTAATTCACAGATGGAGTAGAAACCCTCTGTGTTTATGCTTCTTTCCTATCAATCCTTTGCCACCCACCTACCTTTAAGTCTATAACATGGACCATGGGGAATCATAAGTTAGATAGTAAAGAAAAAGGAATTTTGTATTTCTTTCGAAATAGTTATTGAATAGTTAGCATAAGCTCTAGCGACCATGAACTGTTGAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599359" ref_strand="+" ref_description="SGN-U599359 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|22208478|gb|AAM94304.1| (e_value=2e-19) receptor-like kinase [Sorghum bicolor]; (*ATH) AT4G23180.1 (e_value=7e-21)  Symbol: None | receptor-like protein kinase 4, putative (RLK4), nearly identical to receptor-like protein kinase 4 (Arabidopsis thaliana) GI:13506745; contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA receptor-like protein kina... ; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=6e-20) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10; ">
      <seq>aagattgttgtaactcaattcattcaattcttattaagatttagctattttatttgttcttttatgaattttaagtagctaaaaattattgttttgtttatcctaacaatatatataacatgtgacatatcaaattagaaaatgtcttgtgacaatctctccagaatcaatttggacagcatatcaacccaattcattgagctagtaaatggacgggtcagtaaccctcccacacttgaacagattgcctgatgactgatgtatcataatcagctgactaacgaccatcaggtgtagtaatagtcacctcattgatcgaagatggtgttgtttctgtggtacccgattcagagttgggggtaatcaatggctgcttcggggagggaaccgttgcttcattacttagcatgaatagaactgatgacatggttggtctgtcccctgcattcacttgcaaacacaatagccctacttgaatacagcgtagtgcttcctcaccggggcaagaatcaactatagttggatctatcagcatgaaggccttgccatcattccaaagctcccaggcctgaatcagtagttcatttaaatggataaatttgattcttaatcaaagaaagattcaaacatttgcatttcacaacttacctgtcgtantaaatttggaggggaatcactattataagagattctgttcttttttccactgatgatctccnataatatgacnccnaagctaaanacntcnnattttactgananagacngctagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="95426" stop="96789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95726" g_stop="96501" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U599359" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95726" e_stop="96501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTTGTAACTCAATTCATTCAATTCTTATTAAGATTTAGCTATTTTATTTGTTCTTTTATGAATTTTAAGTAGCTAAAAATTATTGTTTTGTTTATCCTAACAATATATATAACATGTGACATATCAAATTAGAAAATGTCTTGTGACAATCTCTCCAGAATCAATTTGGACAGCATATCAACCCAATTCATTGAGCTAGTAAATGGACGGGTCAGTAACCCTCCCACACTTGAACAGATTGCCTGATGACTGATGTATCATAATCAGCTGACTAACGACCATCAGGTGTAGTAATAGTCACCTCATTGATCGAAGATGGTGTTGTTTCTGTGGTACCCGATTCAGAGTTGGGGGTAATCAATGGCTGCTTCGGGGAGGGAACCGTTGCTTCATTACTTAGCATGAATAGAACTGATGACATGGTTGGTCTGTCCCCTGCATTCACTTGCAAACACAATAGCCCTACTTGAATACAGCGTAGTGCTTCCTCACCGGGGCAAGAATCAACTATAGTTGGATCTATCAGCATGAAGGCCTTGCCATCATTCCAAAGCTCCCAGGCCTGAATCAGTAGTTCATTTAAATGGATAAATTTGATTCTTAATCAAAGAAAGATTCAAACATTTGCATTTCACAACTTACCTGTCGTATTAAATTTGGAGGGGAATCACTATTATAAGAGATTCTGTTCTTTTTTCCACTGATGATCTCCAATAATATGACACCAAAGCTAAAGACATCAGATTTTACTGAGAAGAGACCAGCTAGAG</genome_strand>
        <mrna_strand>AAGATTGTTGTAACTCAATTCATTCAATTCTTATTAAGATTTAGCTATTTTATTTGTTCTTTTATGAATTTTAAGTAGCTAAAAATTATTGTTTTGTTTATCCTAACAATATATATAACATGTGACATATCAAATTAGAAAATGTCTTGTGACAATCTCTCCAGAATCAATTTGGACAGCATATCAACCCAATTCATTGAGCTAGTAAATGGACGGGTCAGTAACCCTCCCACACTTGAACAGATTGCCTGATGACTGATGTATCATAATCAGCTGACTAACGACCATCAGGTGTAGTAATAGTCACCTCATTGATCGAAGATGGTGTTGTTTCTGTGGTACCCGATTCAGAGTTGGGGGTAATCAATGGCTGCTTCGGGGAGGGAACCGTTGCTTCATTACTTAGCATGAATAGAACTGATGACATGGTTGGTCTGTCCCCTGCATTCACTTGCAAACACAATAGCCCTACTTGAATACAGCGTAGTGCTTCCTCACCGGGGCAAGAATCAACTATAGTTGGATCTATCAGCATGAAGGCCTTGCCATCATTCCAAAGCTCCCAGGCCTGAATCAGTAGTTCATTTAAATGGATAAATTTGATTCTTAATCAAAGAAAGATTCAAACATTTGCATTTCACAACTTACCTGTCGTANTAAATTTGGAGGGGAATCACTATTATAAGAGATTCTGTTCTTTTTTCCACTGATGATCTCCNATAATATGACNCCNAAGCTAAANACNTCNNATTTTACTGA-NANAGA-CNGCTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597478" ref_strand="+" ref_description="SGN-U597478 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157351115|emb|CAO41272.1| (e_value=1e-38) unnamed; (*ATH) AT4G21380.1 (e_value=3e-30) | Symbol: None | S-locus protein kinase, putative (ARK3), identical to PIR:T05180:T05180 S-receptor kinase ARK3 precursor - (Arabidopsis thaliana) | chr4:11388936-11393237 REVERSE | Aliases: T6K22.110, T6K22_110; (*SWP) sp|P07761|SLSG6_BRAOL (e_value=1e-26) S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG; ">
      <seq>cttttccctcgacctgtcaatactttttcaagaaaaggtattttgggaatgaagatattattggttggtttagttctcttgctttctttagttaggtgcaataatacgcgttcagacaacttgttgcctggacaaatcctttccttctctgcagcaaatactttagtgtccaaacaagggaagtttgaactcggtttcttctgtccaggtgattgtgagaagctttttattggtatatggtatacaaacataaagcccaacaccgtggtttgggtagcaaatagggacagccccatctgccctcccttcaataattctcacctagagctctctgatggaaatctaggaatctttaatgcacttaaacaaagagtctgggactctaatttatccacagcagatgtcaatagggcagtacttcttgattctggaaatttcattttgactaatggcattgaaatacagtggcagagctttgattatcctacagatacatggctgcctggtgcaaggattggatttgataagtccaagaacacactccagaaacttacttcttggacgaatacgaatgatacagcttcaggacacttctctttggaattagaccctaatcnaaatggtgagttagtcatgctacgtaacctcgtgaaaatgtggatctggtggnctttgaatctcgtnnntccaacttcagttataatccnacagaanatantgcatttantact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="-" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99685" stop="98354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99385" g_stop="98654" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="-" ref_id="SGN-U597478" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99385" e_stop="98654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCCCTCGACCTGTCAATACTTTTTCAAGAAAAGGTATTTTGGGAATGAAGATATTATTGGTTGGTTTAGTTCTCTTGCTTTCTTTAGTTAGGTGCAATAATACGCGTTCAGACAACTTGTTGCCTGGACAAATCCTTTCCTTCTCTGCAGCAAATACTTTAGTGTCCAAACAAGGGAAGTTTGAACTCGGTTTCTTCTGTCCAGGTGATTGTGAGAAGCTTTTTATTGGTATATGGTATACAAACATAAAGCCCAACACCGTGGTTTGGGTAGCAAATAGGGACAGCCCCATCTGCCCTCCCTTCAATAATTCTCACCTAGAGCTCTCTGATGGAAATCTAGGAATCTTTAATGCACTTAAACAAAGAGTCTGGGACTCTAATTTATCCACAGCAGATGTCAATAGGGCAGTACTTCTTGATTCTGGAAATTTCATTTTGACTAATGGCATTGAAATACAGTGGCAGAGCTTTGATTATCCTACAGATACATGGCTGCCTGGTGCAAGGATTGGATTTGATAAGTCCAAGAACACACTCCAGAAACTTACTTCTTGGACGAATACGAATGATACAGCTTCAGGACACTTCTCTTTGGAATTAGACCCTAATCAAAATGGTGAGTTAGTCATGCTACGTAACCTCGTGAAAATGTGGATCTGGTGGCCTTTGAATCTCGTGGAATCCAACTTCAGTTATAATCCAACAGAACATAGTGCATTTATTACT</genome_strand>
        <mrna_strand>CTTTTCCCTCGACCTGTCAATACTTTTTCAAGAAAAGGTATTTTGGGAATGAAGATATTATTGGTTGGTTTAGTTCTCTTGCTTTCTTTAGTTAGGTGCAATAATACGCGTTCAGACAACTTGTTGCCTGGACAAATCCTTTCCTTCTCTGCAGCAAATACTTTAGTGTCCAAACAAGGGAAGTTTGAACTCGGTTTCTTCTGTCCAGGTGATTGTGAGAAGCTTTTTATTGGTATATGGTATACAAACATAAAGCCCAACACCGTGGTTTGGGTAGCAAATAGGGACAGCCCCATCTGCCCTCCCTTCAATAATTCTCACCTAGAGCTCTCTGATGGAAATCTAGGAATCTTTAATGCACTTAAACAAAGAGTCTGGGACTCTAATTTATCCACAGCAGATGTCAATAGGGCAGTACTTCTTGATTCTGGAAATTTCATTTTGACTAATGGCATTGAAATACAGTGGCAGAGCTTTGATTATCCTACAGATACATGGCTGCCTGGTGCAAGGATTGGATTTGATAAGTCCAAGAACACACTCCAGAAACTTACTTCTTGGACGAATACGAATGATACAGCTTCAGGACACTTCTCTTTGGAATTAGACCCTAATCNAAATGGTGAGTTAGTCATGCTACGTAACCTCGTGAAAATGTGGATCTGGTGGNCTTTGAATCTCGT-NNNTCCAACTTCAGTTATAATCCNACAGAANATANTGCATTTANTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598874" ref_strand="+" ref_description="SGN-U598874 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tagaaatcaccctaaacaattttttcccctctcaagtaaaataaaaaataaacctaagtttggagcaaaggtaggtgttttacgagacaatattgggttatggtattcatttggataaagtttagaaatattttcgcctcatgtcattaaaaatatttaatattttttatgaagtttcaacttaaaataaatattggctgttgtttttattcatttgctctgccctcccatccttcaaaataaagttgaaatatttcttataggattagaacaagtagggactggacaaacggaacttgagatttagcttcttcattctcaggtagtcctttgttgtatttttaagaaaggtaacaaagtacttgcgaacggattatttattattgctataaactttgattctatgattcactaacctttagctctgctgtttgccattgttgtaatcatcaagttataaacataattaatgcactgttggttgcacttgtactgtatcgacagtctggtaacttatgcacacaacctgtttgattatttgctcattanacttttatcctctatgcttcaaaataggtaaccttttaactgtagccagaagcanacttangatgntaagccagtccatgtggagtaccaccatctatactactatttagtgtcggtgggtganaatgctgacttagttcaatacatttttgtaaaagtgggctagtagtactgtgctcnacaattcaacatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="106450" stop="107797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106750" g_stop="107497" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U598874" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106750" e_stop="107497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATCACCCTAAACAATTTTTTCCCCTCTCAAGTAAAATAAAAAATAAACCTAAGTTTGGAGCAAAGGTAGGTGTTTTACGAGACAATATTGGGTTATGGTATTCATTTGGATAAAGTTTAGAAATATTTTCGCCTCATGTCATTAAAAATATTTAATATTTTTTATGAAGTTTCAACTTAAAATAAATATTGGCTGTTGTTTTTATTCATTTGCTCTGCCCTCCCATCCTTCAAAATAAAGTTGAAATATTTCTTATAGGATTAGAACAAGTAGGGACTGGACAAACGGAACTTGAGATTTAGCTTCTTCATTCTCAGGTAGTCCTTTGTTGTATTTTTAAGAAAGGTAACAAAGTACTTGCGAACGGATTATTTATTATTGCTATAAACTTTGATTCTATGATTCACTAACCTTTAGCTCTGCTGTTTGCCATTGTTGTAATCATCAAGTTATAAACATAATTAATGCACTGTTGGTTGCACTTGTACTGTATCGACAGTCTGGTAACTTATGCACACAACCTGTTTGATTATTTGCTCATTAGACTTTTATCCCTCTATGCTTC-AAATAGGTAACCTTTTAACTGTAGCCAGAAGCAGACTTAGGATGTTAAGCCCGTCCATGGTGGAGTACCACCCATCTATACCACTATTTAGTGTCGGTGGGTGACAATGCTGACTTAGTTCAATACATTTTTGTAAAAGTGGGCTAGTAGTACTGTGCTCAACAATTCAACATCAATG</genome_strand>
        <mrna_strand>TAGAAATCACCCTAAACAATTTTTTCCCCTCTCAAGTAAAATAAAAAATAAACCTAAGTTTGGAGCAAAGGTAGGTGTTTTACGAGACAATATTGGGTTATGGTATTCATTTGGATAAAGTTTAGAAATATTTTCGCCTCATGTCATTAAAAATATTTAATATTTTTTATGAAGTTTCAACTTAAAATAAATATTGGCTGTTGTTTTTATTCATTTGCTCTGCCCTCCCATCCTTCAAAATAAAGTTGAAATATTTCTTATAGGATTAGAACAAGTAGGGACTGGACAAACGGAACTTGAGATTTAGCTTCTTCATTCTCAGGTAGTCCTTTGTTGTATTTTTAAGAAAGGTAACAAAGTACTTGCGAACGGATTATTTATTATTGCTATAAACTTTGATTCTATGATTCACTAACCTTTAGCTCTGCTGTTTGCCATTGTTGTAATCATCAAGTTATAAACATAATTAATGCACTGTTGGTTGCACTTGTACTGTATCGACAGTCTGGTAACTTATGCACACAACCTGTTTGATTATTTGCTCATTANACTTTTAT-CCTCTATGCTTCAAAATAGGTAACCTTTTAACTGTAGCCAGAAGCANACTTANGATGNTAAGCCAGTCCAT-GTGGAGTACCA-CCATCTATACTACTATTTAGTGTCGGTGGGTGANAATGCTGACTTAGTTCAATACATTTTTGTAAAAGTGGGCTAGTAGTACTGTGCTCNACAATTCAACATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564548" ref_strand="+" ref_description="SGN-U564548 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157329543|emb|CAO40655.1| (e_value=1e-103) unnamed; (*ATH) AT4G21350.1 (e_value=2e-55) | Symbol: None | U-box domain-containing protein, similar to immediate-early fungal elicitor protein CMPG1 (Petroselinum crispum) GI:14582198; contains Pfam profile PF04564: U-box domain | chr4:11356154-11357278 REVERSE | Aliases: T6K22.80, T6K22_80; (*SWP) sp|O81902|PUB8_ARATH (e_value=2e-54) U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8; ">
      <seq>atcggccgaattggtagatagatagatacctatagaaagagaatctagagagagaaaacagaaacccatttcccagaaagaacacaaaaatagaaatggcaacttcaacccagttcccggacgattttcggtgcccgatttcccttgaaattatgtccgacccggttattctgtcgtcgggtcacaccttcgaccgctcttcaatccaacggtgggtagactccggccaccggacttgcccgattaccaagctacccatttccgacccggtttctctcatccctaatcatgcccttcggagtctcatttccaattataccctcgtctctttccccaaaccactcacataccctgaaccgcagtcccttattcaaacccttattgcttcttcttcttctaatttggattctaagctccactcgcttgaccaactcagtaagctttccaagcgtgatttggcgatccgaaggaaactcaccgagtcgggcgctgtatctgctcttctcaattgcgttaactcggatgatgactcgggtggtttgcaggagaaagcgcttcatttgttgttgaatttgagcttggatgatgataacaaagtggggttggtggcaaaaggggttgtgggggaaagtggtctcctctttacgaagaggtgctggagactcgagggcggtggcggccacggttttgacgagtttagcggtggtggaagtgaataaggcaaccattggggcatacccagatgcaattccagggttaatttcgctgctttggggtggcagcggtagagagagaaaggaagctgctactgctctctacacgctgtgctctttcccggataaatcgggttcgggccgtgcagaaccaggctgttccagtactaattaagaatgctaatttaggcctagaaagatcagttgaggtattgggattattagcaaaatgtaaagagggtcgttatgaaatgtttaaatactgtgggttgttggatattttgataaaattcttgaaaaatgggtcttcaagagctgtgcaatatggtcttttgactatcagcttgctgtgtagttacagtgaaaggatgcgtgtgttggctgtaagagaaggggtgtttgagatttctgttgggttattacaagatgataatgagaaagtgagaagaaatgctaatagcttgattcaggttttacaagggcaaacattaagtctttgagatatgaatttggaaagtgttgattttgaatggattattggaagctttggagggtgaagaagaagaaggtgagtttttaggcttcctcataattatttttgttgaatagtttttctttgtacaaaaagattagaattttagggcaanaaaatgtgcatctctctttttctctatcaaaatctcttttgtttttttggttttatattatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="111440" stop="113456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111752" g_stop="113156" g_length="1405"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="1425" r_length="1408" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U564548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1405</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111752" e_stop="113156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATAGATACGTATAGAAAGAGAATCTAGAGAGAGAAAACAGAAACCCATTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAGAAGGGGTTGT-GGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAGACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTCCCGGAT-AATCGGGTTCGGGCCGTGCAGAACCAGGCTGTTCCAGTACTAATTAAGAATGCTAATTTAGGCCTAGAAAGATCAGTTGAGGTATTGGGATTATTAGCAAAATGTAAAGAGGGTCGTTATGAAATGTTTAAATACTGTGGGTTGTTGGATATTTTGATAAAATTCTTGAAAAATGGGTCTTCAAGAGCTGTGCAATATGGTCTTTTGACTATCAGCTTGCTGTGTAGTTACAGTGAAAGGATGCGTGTGTTGGCTGTAAGAGAAGGGGTGTTTGAGATTTCTGTTGGGTTATTACAAGATGATAATGAGAAAGTGAGAAGAAATGCTAATAGCTTGATTCAGGTTTTACAAGGGCAAACATTAAGTCTTTGAGATATGAATTTGGAAAGTGTTGATTTTGAATGGATTATTGGAAGCTTTGGAGGGTGAAGAAGAAGAAGGTGAGTTTTTAGGCTTCCTCATAATTATTTTTGTTGAATAGTTTTTCTTTGTACAAAAAGATTAGAATTTTAGGGCAA-AAAATGTGCATCTCTCTTTTTCTCTATCAAAATCTCTTTTGTTTTTTTGGTTTTATATTATCAAC</genome_strand>
        <mrna_strand>ATAGATAGATACCTATAGAAAGAGAATCTAGAGAGAGAAAACAGAAACCCATTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAAAAGGGGTTGTGGGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAGACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTCCCGGATAAATCGGGTTCGGGCCGTGCAGAACCAGGCTGTTCCAGTACTAATTAAGAATGCTAATTTAGGCCTAGAAAGATCAGTTGAGGTATTGGGATTATTAGCAAAATGTAAAGAGGGTCGTTATGAAATGTTTAAATACTGTGGGTTGTTGGATATTTTGATAAAATTCTTGAAAAATGGGTCTTCAAGAGCTGTGCAATATGGTCTTTTGACTATCAGCTTGCTGTGTAGTTACAGTGAAAGGATGCGTGTGTTGGCTGTAAGAGAAGGGGTGTTTGAGATTTCTGTTGGGTTATTACAAGATGATAATGAGAAAGTGAGAAGAAATGCTAATAGCTTGATTCAGGTTTTACAAGGGCAAACATTAAGTCTTTGAGATATGAATTTGGAAAGTGTTGATTTTGAATGGATTATTGGAAGCTTTGGAGGGTGAAGAAGAAGAAGGTGAGTTTTTAGGCTTCCTCATAATTATTTTTGTTGAATAGTTTTTCTTTGTACAAAAAGATTAGAATTTTAGGGCAANAAAATGTGCATCTCTCTTTTTCTCTATCAAAATCTCTTTTGTTTTTTTGGTTTTATATTATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563063" ref_strand="+" ref_description="SGN-U563063 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|147788048|emb|CAN78237.1| (e_value=8e-95) hypothetical; (*ATH) AT4G27270.1 (e_value=7e-96)  Symbol: None | quinone reductase family protein, similar to 1,4-benzoquinone reductase (Phanerochaete chrysosporium)(GI:4454993); similar to Trp repressor binding protein (Escherichia coli)(SP:P30849); contains flavodoxin domain PF00258 | chr4:13661... ; (*SWP) sp|Q1C8L9|WRBA_YERPA (e_value=2e-44) Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=wrbA; ">
      <seq>gctctttcttttctattctattccaacaacaactcattcatccacctactactttccctttcaaatggcaaccaaagtctacattgtttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatcttgaactggagcaagctttccaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgattgtttcactacaaactcatgtcctattgcattctgctgtccatttttttttcccctatgtctagtatactcttgttttaagttgcatttctactacaaaaaaacaataagtgattattatctattatatcagcatatatatatagggtcagtgtctatcacagtttacagaggttgtttacatgttctatgaatcatacttaattttttttttctcatttcataatcaatggctacagcaacaatccctttatctctctctctcccaaccccccaattatgttactcgatgtcaatttgataagaagatttttgtgatccaatcccaataagttgtctcaaactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122310" stop="125592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122609" g_stop="122695" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="181" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="444" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="125292" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="1023" r_length="579" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U563063" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1021</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122609" e_stop="122695"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="125292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGTGTAAGTACTCTATCTTTTTCTACATTTATATCTTTCTTGTTTTTTTTTTTTTATATATGTTTTGAGTTTGGGGTTCTCTGTTTTGATGTTTAGAGTGAAATGATTGTGGGTATGATTTATTTTTTGTTAATTTGATTCTGGGCTGATAGATTCTTGGTTCTTGATTTTTGCCATGTCTGTGTAAAGACTCTGTCTTTATGTACTGTTCTTATTATATAAATGGGAATATGGTCCTAAGTCTCTGCAAGATTCGTTTTCCAATGATTAATTGAAGAGATTGTGTGGGAAGGTACCAGTTGTTTCCAGTTTTTGTTGGGTTGATCTAAAGGTAGTTTATTGGAAGATTGTTATGAAAATGATATAGCCAATTAATTGTTACAGGCGTTGTTGGTTAGGTATTCTTTTTTGTCTTTTTATGAAAAAATGACATTCTTGAAATTAAAAAAATAATATGCTTCTACAAGTGTTTGTTGTCTTGATCTAAGATAGGAAAATATTTGCTTACTAAAAGGTTTTTATGAAAAATGATTTACCAACTAATTCACTGGGAATTGGTCAGTTGCTCTATTGCTAGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACAATCCCTTTATCTCTCTCTCTCCCAACCCCCCAATTATGTTACTCGATGTCAATTTGATAAGAAGATTTTTGTGATCCAATCCCAATAAGTTGGCTCAAACTAC</genome_strand>
        <mrna_strand>GCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACAATCCCTTTATCTCTCTCTCTCCCAACCCCCCAATTATGTTACTCGATGTCAATTTGATAAGAAGATTTTTGTGATCCAATCCCAATAAGTTGTCTCAAACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563064" ref_strand="+" ref_description="SGN-U563064 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147788048|emb|CAN78237.1| (e_value=2e-85) hypothetical; (*ATH) AT4G27270.1 (e_value=1e-86)  Symbol: None | quinone reductase family protein, similar to 1,4-benzoquinone reductase (Phanerochaete chrysosporium)(GI:4454993); similar to Trp repressor binding protein (Escherichia coli)(SP:P30849); contains flavodoxin domain PF00258 | chr4:13661... ; (*SWP) sp|Q1C8L9|WRBA_YERPA (e_value=3e-38) Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=wrbA; ">
      <seq>ggtctttatgagatgacattcttgaaattgaataatattaacttgaagttccaagatggagttggcgatattaccattggtgctaaatgattttgttgattagaatcaactatcatataaatttatggcctgaactccatagtcttttcaagattcctattgttactactccatgtatggacatgttgagaagctagcacaagagataaagaaaggagccgcatcagttgaaggcgtagaagccaaactatggcaggtaccagaaactctttcagaagaggttcttggaaagatgggtggaccagcaaaaggcgatgcaccaattatcacacccaatgaccttgctgaagctgatggctttgtgtttggattcccaacaagatttgggatgatggctgctcagttcaaggcatttcttgatgccactggtggtctctggagaactcagcagcttgcaggcaagccagcgggccttttctacagtactggctctcaaggaggtggccaagagactactgcgttgactgcaattactcagcttgttcaccatggaatgatctttgtcccgattggttacacatttggtgctggcatgttcgagatggagaagattaaaggtggaagtccttacggtgcaggaacttttgctggagatggctctagacagccaacagatctttgactggagcaagctttcaccagggaaaacacattgctaccatcgcaaagaagctcaaaggctctgcttgaatgtttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0323A14-r86Tr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0323A14.3" temp_strand="+" temp_description="C02HBa0323A14.3  AC215439.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0323A14 sequenced_by:kribb upload_account_name:korea">
        <position start="122969" stop="125255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123268" g_stop="123429" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123430" i_stop="123812" i_length="383">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123813" g_stop="123906" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="256" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124353" g_stop="124613" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="519" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124714" g_stop="124955" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="760" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0323A14.3" gen_strand="+" ref_id="SGN-U563064" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0323A14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123268" e_stop="123429"/>
          <exon e_start="123813" e_stop="123906"/>
          <exon e_start="124353" e_stop="124613"/>
          <exon e_start="124714" e_stop="124955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTGGTAAAAGAAAATCTAAAAATTTCCAGAACATGTCTCATTGGATGATTTGTGTTTTATTGAGAACTAAGTTCTGGCTTGTGCCATCTTTTGTTCCTGTTTTATCTCTAGAAGACTTCTGTGAAGCTGGATTCTAGTGCCTGATGTCCTCATCCGGAATGTATTTGGTTTTATTTTACTGGATATCTTGCGACTGTTCCAATCTGATCTGTGATTCTTATCCAATTTATAGTCAACTTTTGTGTGTTTCATTTGTGTATCTGATGCTGTGAAGTCTTATAAACCCCCCAAAAATTGTCTCCAAAAGTAGAATGGTTTGTATGATCTATTTGATCTTTATGCTTGGGGCTTGTAAAGCTAATGGTGAAAAGTATAAATGAATGCAGTTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAGGTCTGTTTACATTTCATTTTGAGTTGTTATTAATGTGAATGTGTTAGAGAATTTGGTATCCCTGAGAATTGAAGAAATTATGTGAGTTTGACTTTGCCAACGGAATGTCTCCTAAAGTGATATACATTAATTATTGGAAGTGTGGAATCTCTAGAGTCCTAGTCCTTTCCTTAAAATCCTGCTGAGAAATTATTGCCATGACATTTGATGTAGTTATTCCATGTTTGACTACTAATTGTTTAGTGGAGTCAATGCATTTAGACAAAGAAAACCATTTAGTTGACTTGTCTTTTCTCAAATTACTTGTGACTCACTTTTCCTTAATTTCTATGATTGATTTCATATACTGAACAGTGTACCTTTATAGGGCTTTGGAGATGAAAGGAGAAAAAACTAATGAACGTGTATCGTTACTGTGTTCTGTTGTTGATTTGTGAATGGCACAGGTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAA-GCGATGC-CCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGCGTTAGTCCCTTCTCCTCAAAAAACTAACACATTTTGAGCTTGACTTGTGATTTGAAGATTCTAACTGAAAATTTTACATTAAAACTCAATAAATCTGCAGGTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACT</genome_strand>
        <mrna_strand>GGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGGCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTG...............................................................................................................................................................................................................................................................................................................................................................................................TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGGCGATGCACCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC....................................................................................................GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTTGACTGGAGCAAGCTTT-CACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGAATGTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5413" PGL_stop="4966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5413" e_stop="4966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="5413" e_stop="4966" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5413" stop="4966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTGCAGCTTATCTGATAAACAGAATGCCTACAACTGTATTACAAGGGAAGTCACCATATGAACTTCTTTATAAACGAGCACCTAATCTAGAACATTTGAGGGTGTTTGGATGTTTATGTTTTGTATCAGTTTTGCCAAGAAGAGATAAATTTGCTCCAAGAGCAACAAGATCAGTCTTCATTGGGTACTCAGAGACACAAAAAGGATATAAAGTCATGGATTTGGAGACTCATGTCATATCAGTGAGCAGGGAGGTTACATTCATGGAAGATTCATTTCCTTTCAAAGATGTTATCACAAAAGAAGTATCATCAACCACAGATTATACTGCTCCTATACAAATGGATATGTTTGATCATGCAGATGATAATATACCTTCAAATCCTGTAGATTCTATTGAAGATCATGTTGAGGAGATCAATCCTATACAATCAGAAGTTGATG</gDNA_template>
            <first_frame> K  T  A  A  Y  L  I  N  R  M  P  T  T  V  L  Q  G  K  S  P  Y  E  L  L  Y  K  R  A  P  N  L  E  H  L  R  V  F  G  C  L  C  F  V  S  V  L  P  R  R  D  K  F  A  P  R  A  T  R  S  V  F  I  G  Y  S  E  T  Q  K  G  Y  K  V  M  D  L  E  T  H  V  I  S  V  S  R  E  V  T  F  M  E  D  S  F  P  F  K  D  V  I  T  K  E  V  S  S  T  T  D  Y  T  A  P  I  Q  M  D  M  F  D  H  A  D  D  N  I  P  S  N  P  V  D  S  I  E  D  H  V  E  E  I  N  P  I  Q  S  E  V  D  </first_frame>
            <second_frame>  K  L  Q  L  I  *  *  T  E  C  L  Q  L  Y  Y  K  G  S  H  H  M  N  F  F  I  N  E  H  L  I  *  N  I  *  G  C  L  D  V  Y  V  L  Y  Q  F  C  Q  E  E  I  N  L  L  Q  E  Q  Q  D  Q  S  S  L  G  T  Q  R  H  K  K  D  I  K  S  W  I  W  R  L  M  S  Y  Q  *  A  G  R  L  H  S  W  K  I  H  F  L  S  K  M  L  S  Q  K  K  Y  H  Q  P  Q  I  I  L  L  L  Y  K  W  I  C  L  I  M  Q  M  I  I  Y  L  Q  I  L  *  I  L  L  K  I  M  L  R  R  S  I  L  Y  N  Q  K  L  M </second_frame>
            <third_frame>   N  C  S  L  S  D  K  Q  N  A  Y  N  C  I  T  R  E  V  T  I  *  T  S  L  *  T  S  T  *  S  R  T  F  E  G  V  W  M  F  M  F  C  I  S  F  A  K  K  R  *  I  C  S  K  S  N  K  I  S  L  H  W  V  L  R  D  T  K  R  I  *  S  H  G  F  G  D  S  C  H  I  S  E  Q  G  G  Y  I  H  G  R  F  I  S  F  Q  R  C  Y  H  K  R  S  I  I  N  H  R  L  Y  C  S  Y  T  N  G  Y  V  *  S  C  R  *  *  Y  T  F  K  S  C  R  F  Y  *  R  S  C  *  G  D  Q  S  Y  T  I  R  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5413" stop="4967"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTAAYLINRMPTTVLQGKSPYELLYKRAPNLEHLRVFGCLCFVSVLPRRDKFAPRATRSVFIGYSETQKGYKVMDLETHVISVSREVTFMEDSFPFKDVITKEVSSTTDYTAPIQMDMFDHADDNIPSNPVDSIEDHVEEINPIQSEVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18647" PGL_stop="19087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18647" e_stop="19087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="18647" e_stop="19087" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18647" stop="19087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACCTTCTTCTTTCTTTTATTTTCTATACCCTTTACCATTCTTCTTTCTAAAATCCCTTCTCCATTCTTGAATTGTGGCACCATTTCCAAATTCTTGAATGGCCACTGGATTTACCTTCCCCCCCTTTTGGTTCCTGTTTCTTTTCATTCTTTCTTGTTTCTCCTCATTCTGTTTAGGTGGTGACAGAGTTACACTAGGAGAGATTTATAAAGATGGTGATAACCTTACTTCTAAAGGAGGGGATTTTGTGTTGGGGTTCTTTAGTCCTGCAGGTACTAGTAAAAGGTATCTTGGTATATGGTATGTTGATATACCAGTAAAGACATATATATGGGTTGCCAACAGGAACAAGCTTGTTCATGATAAAAATGGTACCTTTTCAATTGATACAATTGGGAATTTGGTTGTTAAAGATGGAAATGGAGATTTACTATGGTC</gDNA_template>
            <first_frame> R  T  F  F  F  L  L  F  S  I  P  F  T  I  L  L  S  K  I  P  S  P  F  L  N  C  G  T  I  S  K  F  L  N  G  H  W  I  Y  L  P  P  L  L  V  P  V  S  F  H  S  F  L  F  L  L  I  L  F  R  W  *  Q  S  Y  T  R  R  D  L  *  R  W  *  *  P  Y  F  *  R  R  G  F  C  V  G  V  L  *  S  C  R  Y  *  *  K  V  S  W  Y  M  V  C  *  Y  T  S  K  D  I  Y  M  G  C  Q  Q  E  Q  A  C  S  *  *  K  W  Y  L  F  N  *  Y  N  W  E  F  G  C  *  R  W  K  W  R  F  T  M  V </first_frame>
            <second_frame>  E  P  S  S  F  F  Y  F  L  Y  P  L  P  F  F  F  L  K  S  L  L  H  S  *  I  V  A  P  F  P  N  S  *  M  A  T  G  F  T  F  P  P  F  W  F  L  F  L  F  I  L  S  C  F  S  S  F  C  L  G  G  D  R  V  T  L  G  E  I  Y  K  D  G  D  N  L  T  S  K  G  G  D  F  V  L  G  F  F  S  P  A  G  T  S  K  R  Y  L  G  I  W  Y  V  D  I  P  V  K  T  Y  I  W  V  A  N  R  N  K  L  V  H  D  K  N  G  T  F  S  I  D  T  I  G  N  L  V  V  K  D  G  N  G  D  L  L  W   </second_frame>
            <third_frame>   N  L  L  L  S  F  I  F  Y  T  L  Y  H  S  S  F  *  N  P  F  S  I  L  E  L  W  H  H  F  Q  I  L  E  W  P  L  D  L  P  S  P  P  F  G  S  C  F  F  S  F  F  L  V  S  P  H  S  V  *  V  V  T  E  L  H  *  E  R  F  I  K  M  V  I  T  L  L  L  K  E  G  I  L  C  W  G  S  L  V  L  Q  V  L  V  K  G  I  L  V  Y  G  M  L  I  Y  Q  *  R  H  I  Y  G  L  P  T  G  T  S  L  F  M  I  K  M  V  P  F  Q  L  I  Q  L  G  I  W  L  L  K  M  E  M  E  I  Y  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18747" stop="19085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATGFTFPPFWFLFLFILSCFSSFCLGGDRVTLGEIYKDGDNLTSKGGDFVLGFFSPAGTSKRYLGIWYVDIPVKTYIWVANRNKLVHDKNGTFSIDTIGNLVVKDGNGDLLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22048" PGL_stop="22534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22048" e_stop="22534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="22048" e_stop="22534" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22048" stop="22534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCTGGTGGATCGTTCAATTTGGGATGGTTGTCAACACAATGAAGCATTGAGATGTATACACTTGGCATTGCTTTGTGTTCAAGATTTGGCGGCTCACAGACCAAACATGTCTTCTGTGGTTCTGATGCTGGAAACTGACAATGTAAGGTTGCCCTTGCCTAGGCAACCTACCTATACTTCAATGAGAAGATCTGTGGATGAAGATATATGGCATGGGAATCAGGATTTAACATCTTCCAACAATGTCACAGTTAGTGTACTAATAGGTAGATGATTGGTTAATGCTTGTTCCTTCTTACATACCTGCTTCATTTGAAGAGAATGGGATCAAGTAGTGTAACTATGTAAAGTTATAGTTGGAACTATGTTCATAATTTTTTGTTAGCTAGGTAAACTTTCGCACATCATGTGTATTGTAATTAGAAGGTGGTTCAGCTCTGCAAGCTGAAAGAGAGATATGTCACAACCTTGTTCAATCGGTAT</gDNA_template>
            <first_frame> W  T  W  W  I  V  Q  F  G  M  V  V  N  T  M  K  H  *  D  V  Y  T  W  H  C  F  V  F  K  I  W  R  L  T  D  Q  T  C  L  L  W  F  *  C  W  K  L  T  M  *  G  C  P  C  L  G  N  L  P  I  L  Q  *  E  D  L  W  M  K  I  Y  G  M  G  I  R  I  *  H  L  P  T  M  S  Q  L  V  Y  *  *  V  D  D  W  L  M  L  V  P  S  Y  I  P  A  S  F  E  E  N  G  I  K  *  C  N  Y  V  K  L  *  L  E  L  C  S  *  F  F  V  S  *  V  N  F  R  T  S  C  V  L  *  L  E  G  G  S  A  L  Q  A  E  R  E  I  C  H  N  L  V  Q  S  V  </first_frame>
            <second_frame>  G  P  G  G  S  F  N  L  G  W  L  S  T  Q  *  S  I  E  M  Y  T  L  G  I  A  L  C  S  R  F  G  G  S  Q  T  K  H  V  F  C  G  S  D  A  G  N  *  Q  C  K  V  A  L  A  *  A  T  Y  L  Y  F  N  E  K  I  C  G  *  R  Y  M  A  W  E  S  G  F  N  I  F  Q  Q  C  H  S  *  C  T  N  R  *  M  I  G  *  C  L  F  L  L  T  Y  L  L  H  L  K  R  M  G  S  S  S  V  T  M  *  S  Y  S  W  N  Y  V  H  N  F  L  L  A  R  *  T  F  A  H  H  V  Y  C  N  *  K  V  V  Q  L  C  K  L  K  E  R  Y  V  T  T  L  F  N  R  Y </second_frame>
            <third_frame>   D  L  V  D  R  S  I  W  D  G  C  Q  H  N  E  A  L  R  C  I  H  L  A  L  L  C  V  Q  D  L  A  A  H  R  P  N  M  S  S  V  V  L  M  L  E  T  D  N  V  R  L  P  L  P  R  Q  P  T  Y  T  S  M  R  R  S  V  D  E  D  I  W  H  G  N  Q  D  L  T  S  S  N  N  V  T  V  S  V  L  I  G  R  *  L  V  N  A  C  S  F  L  H  T  C  F  I  *  R  E  W  D  Q  V  V  *  L  C  K  V  I  V  G  T  M  F  I  I  F  C  *  L  G  K  L  S  H  I  M  C  I  V  I  R  R  W  F  S  S  A  S  *  K  R  D  M  S  Q  P  C  S  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22050" stop="22325"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLVDRSIWDGCQHNEALRCIHLALLCVQDLAAHRPNMSSVVLMLETDNVRLPLPRQPTYTSMRRSVDEDIWHGNQDLTSSNNVTVSVLIGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23879" PGL_stop="27080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23879" e_stop="24213"/>
            <exon e_start="26703" e_stop="26914"/>
            <exon e_start="27068" e_stop="27080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.773" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="23879" e_stop="24213" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.773">
            <gDNA_intron_boundary i_start="24214" i_stop="26702" i_length="2489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26703" e_stop="26914" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26915" i_stop="27067" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27068" e_stop="27080" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23879" stop="24213"/>
              <exon start="26703" stop="26914"/>
              <exon start="27068" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGAAAACCCCCATTTTTTCAACCCTAAAAACCCGTTTCGTCTTACTGTTCGATTCTCCTCTTTTCCACTGTTCCCAGCAGAATAGGACTCAATTGCTCAAAATTGGTTAATGGTGTTTCGTGTAGTACCGTTGGCTCTGGGAATTTGGTGAGATCGATTAAAAGATCAATAAAATATCCCCCATTCAAGCTGCACTTCCAACAAGTGGCTCAGAGTTGGCAAGTTTTGCCAGGAAGTTTATTGTAGCCCTCCTTCACCGTCCAGTTCCAGTTTGGCACCTGTACTCGAAGCTATAATCAGATCCTATCTTACCAAACCCCGAAGCTATAACG : GACAGAAGAGAAAAGGAGCCAGAAGCTTCAGTCTGGGTGATTCATGCTACATTTCAAAAGACTACACAGTGGAAAGTTTATGGATTGGTAATTTAAAGAAAGAAGATCCAATTGAACTTCCACTGATTGAATTTGAGGTAATTGCCTCAGCAACAAACAACTTCAATGAAGAAAACAAACTCGGGGAAGGAGGTTTTGGTCCAGTTTTCAAG : GGAAAGCTAAAAG</gDNA_template>
            <first_frame> K  G  K  P  P  F  F  Q  P  *  K  P  V  S  S  Y  C  S  I  L  L  F  S  T  V  P  S  R  I  G  L  N  C  S  K  L  V  N  G  V  S  C  S  T  V  G  S  G  N  L  V  R  S  I  K  R  S  I  K  Y  P  P  F  K  L  H  F  Q  Q  V  A  Q  S  W  Q  V  L  P  G  S  L  L  *  P  S  F  T  V  Q  F  Q  F  G  T  C  T  R  S  Y  N  Q  I  L  S  Y  Q  T  P  K  L  *  R :   T  E  E  K  R  S  Q  K  L  Q  S  G  *  F  M  L  H  F  K  R  L  H  S  G  K  F  M  D  W  *  F  K  E  R  R  S  N  *  T  S  T  D  *  I  *  G  N  C  L  S  N  K  Q  L  Q  *  R  K  Q  T  R  G  R  R  F  W  S  S  F  Q   : G  K  A  K   </first_frame>
            <second_frame>  K  E  N  P  H  F  F  N  P  K  N  P  F  R  L  T  V  R  F  S  S  F  P  L  F  P  A  E  *  D  S  I  A  Q  N  W  L  M  V  F  R  V  V  P  L  A  L  G  I  W  *  D  R  L  K  D  Q  *  N  I  P  H  S  S  C  T  S  N  K  W  L  R  V  G  K  F  C  Q  E  V  Y  C  S  P  P  S  P  S  S  S  S  L  A  P  V  L  E  A  I  I  R  S  Y  L  T  K  P  R  S  Y  N   : G  Q  K  R  K  G  A  R  S  F  S  L  G  D  S  C  Y  I  S  K  D  Y  T  V  E  S  L  W  I  G  N  L  K  K  E  D  P  I  E  L  P  L  I  E  F  E  V  I  A  S  A  T  N  N  F  N  E  E  N  K  L  G  E  G  G  F  G  P  V  F  K  :  G  K  L  K  </second_frame>
            <third_frame>   R  K  T  P  I  F  S  T  L  K  T  R  F  V  L  L  F  D  S  P  L  F  H  C  S  Q  Q  N  R  T  Q  L  L  K  I  G  *  W  C  F  V  *  Y  R  W  L  W  E  F  G  E  I  D  *  K  I  N  K  I  S  P  I  Q  A  A  L  P  T  S  G  S  E  L  A  S  F  A  R  K  F  I  V  A  L  L  H  R  P  V  P  V  W  H  L  Y  S  K  L  *  S  D  P  I  L  P  N  P  E  A  I  T  :  D  R  R  E  K  E  P  E  A  S  V  W  V  I  H  A  T  F  Q  K  T  T  Q  W  K  V  Y  G  L  V  I  *  R  K  K  I  Q  L  N  F  H  *  L  N  L  R  *  L  P  Q  Q  Q  T  T  S  M  K  K  T  N  S  G  K  E  V  L  V  Q  F  S  R :   E  S  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24054" stop="24213"/>
                    <exon start="26703" stop="26914"/>
                    <exon start="27068" stop="27079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIPHSSCTSNKWLRVGKFCQEVYCSPPSPSSSSLAPVLEAIIRSYLTKPRSYNGQKRKGARSFSLGDSCYISKDYTVESLWIGNLKKEDPIELPLIEFEVIASATNNFNEENKLGEGGFGPVFKGKLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28418" PGL_stop="28114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28418" e_stop="28114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="28418" e_stop="28114" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28418" stop="28114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGACTTGATTTTTGTACTTGATTAAAAACTTTTAAGAATGTACAATAGCATGTTCTATCGTCCTTGAGACAACGATGCACTAAACTCATTGACAGAACATCTTTCGTTATCTTTTGCTGATCCATCAAGATCCAAGTATGTTTCAAACTTAAATGTGGGTTGTTTAGGACTTGAGCATTTCATTTCACTGTTGAGCATGAGAATTATGTCAGCCATAGTAGGACGGTCCCTAGGATGCTCTTGAACACAGAGAAGGCCAACGTGTAGGCATCGCGGTATCTCTTCTGGAGAAAATGAGTTGAT</gDNA_template>
            <first_frame> N  D  L  I  F  V  L  D  *  K  L  L  R  M  Y  N  S  M  F  Y  R  P  *  D  N  D  A  L  N  S  L  T  E  H  L  S  L  S  F  A  D  P  S  R  S  K  Y  V  S  N  L  N  V  G  C  L  G  L  E  H  F  I  S  L  L  S  M  R  I  M  S  A  I  V  G  R  S  L  G  C  S  *  T  Q  R  R  P  T  C  R  H  R  G  I  S  S  G  E  N  E  L   </first_frame>
            <second_frame>  M  T  *  F  L  Y  L  I  K  N  F  *  E  C  T  I  A  C  S  I  V  L  E  T  T  M  H  *  T  H  *  Q  N  I  F  R  Y  L  L  L  I  H  Q  D  P  S  M  F  Q  T  *  M  W  V  V  *  D  L  S  I  S  F  H  C  *  A  *  E  L  C  Q  P  *  *  D  G  P  *  D  A  L  E  H  R  E  G  Q  R  V  G  I  A  V  S  L  L  E  K  M  S  *  </second_frame>
            <third_frame>   *  L  D  F  C  T  *  L  K  T  F  K  N  V  Q  *  H  V  L  S  S  L  R  Q  R  C  T  K  L  I  D  R  T  S  F  V  I  F  C  *  S  I  K  I  Q  V  C  F  K  L  K  C  G  L  F  R  T  *  A  F  H  F  T  V  E  H  E  N  Y  V  S  H  S  R  T  V  P  R  M  L  L  N  T  E  K  A  N  V  *  A  S  R  Y  L  F  W  R  K  *  V  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0323A14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="42143" PGL_stop="42892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42143" e_stop="42892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="42143" e_stop="42892" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42143" stop="42892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTCCTTCCTTCCCTCTTCCTATCAAACAAGAGAACAAGTACACCAACAAATGTCTCAAACACCAACACTGCAGCAAAACAAAATATTTTTTTCTTAAATTACACAATGAGAAACACCAAAGATTACTACTTTCACCAATTCTTGTTCTTGATTTTGATTTCTCAATTTCTTCATCCAATTCTTGCTATACCCACTGATACAATCACCCCAACACAGTCTTTAACCAAAGATCAAACCTTAGTATCTTCCGATCAACTCTTTGAATTAGGCTTTTTCTCTCCAGGCGGTGCAAATTCAGACAAATGGTATATCGGTATTTGGTATAAAGAGATTCAAGACAGGACTATTGTCTGGGTTGCAAACAGAGCTAAACCCCTTTCAGCTTCATCAACATCAGTCCTAAAAATCACAGAAATTGGTACCCTTCTTCTCGTCGATGGCCAAACTGGGAATTCCGTTTGGTCTTCCGATCAAACTCCGGCGACCAACGTTGTAGCCCAACTACTTGACTCCGGGAACTTTGTCATTCGACCGGAAAACGATGACAGGGAACAGAGTTACCTATGGCAGAGCTTTGATTATCCAACAAACACTTTATTACCTGGGATGAAACTTGGGTGGGATTCAAAATCCGGGATGAATAGAAACATAACATCATGGAAATCAGCAATTGACCCAGCTCCCGGAGATTACACTTTCAAGATCAACACCAGTGGGTTCCCGGAAATTTACTTGACGAATAAACAA</gDNA_template>
            <first_frame> I  F  L  P  S  L  F  L  S  N  K  R  T  S  T  P  T  N  V  S  N  T  N  T  A  A  K  Q  N  I  F  F  L  N  Y  T  M  R  N  T  K  D  Y  Y  F  H  Q  F  L  F  L  I  L  I  S  Q  F  L  H  P  I  L  A  I  P  T  D  T  I  T  P  T  Q  S  L  T  K  D  Q  T  L  V  S  S  D  Q  L  F  E  L  G  F  F  S  P  G  G  A  N  S  D  K  W  Y  I  G  I  W  Y  K  E  I  Q  D  R  T  I  V  W  V  A  N  R  A  K  P  L  S  A  S  S  T  S  V  L  K  I  T  E  I  G  T  L  L  L  V  D  G  Q  T  G  N  S  V  W  S  S  D  Q  T  P  A  T  N  V  V  A  Q  L  L  D  S  G  N  F  V  I  R  P  E  N  D  D  R  E  Q  S  Y  L  W  Q  S  F  D  Y  P  T  N  T  L  L  P  G  M  K  L  G  W  D  S  K  S  G  M  N  R  N  I  T  S  W  K  S  A  I  D  P  A  P  G  D  Y  T  F  K  I  N  T  S  G  F  P  E  I  Y  L  T  N  K  Q </first_frame>
            <second_frame>  S  S  F  L  P  S  S  Y  Q  T  R  E  Q  V  H  Q  Q  M  S  Q  T  P  T  L  Q  Q  N  K  I  F  F  S  *  I  T  Q  *  E  T  P  K  I  T  T  F  T  N  S  C  S  *  F  *  F  L  N  F  F  I  Q  F  L  L  Y  P  L  I  Q  S  P  Q  H  S  L  *  P  K  I  K  P  *  Y  L  P  I  N  S  L  N  *  A  F  S  L  Q  A  V  Q  I  Q  T  N  G  I  S  V  F  G  I  K  R  F  K  T  G  L  L  S  G  L  Q  T  E  L  N  P  F  Q  L  H  Q  H  Q  S  *  K  S  Q  K  L  V  P  F  F  S  S  M  A  K  L  G  I  P  F  G  L  P  I  K  L  R  R  P  T  L  *  P  N  Y  L  T  P  G  T  L  S  F  D  R  K  T  M  T  G  N  R  V  T  Y  G  R  A  L  I  I  Q  Q  T  L  Y  Y  L  G  *  N  L  G  G  I  Q  N  P  G  *  I  E  T  *  H  H  G  N  Q  Q  L  T  Q  L  P  E  I  T  L  S  R  S  T  P  V  G  S  R  K  F  T  *  R  I  N   </second_frame>
            <third_frame>   L  P  S  F  P  L  P  I  K  Q  E  N  K  Y  T  N  K  C  L  K  H  Q  H  C  S  K  T  K  Y  F  F  L  K  L  H  N  E  K  H  Q  R  L  L  L  S  P  I  L  V  L  D  F  D  F  S  I  S  S  S  N  S  C  Y  T  H  *  Y  N  H  P  N  T  V  F  N  Q  R  S  N  L  S  I  F  R  S  T  L  *  I  R  L  F  L  S  R  R  C  K  F  R  Q  M  V  Y  R  Y  L  V  *  R  D  S  R  Q  D  Y  C  L  G  C  K  Q  S  *  T  P  F  S  F  I  N  I  S  P  K  N  H  R  N  W  Y  P  S  S  R  R  W  P  N  W  E  F  R  L  V  F  R  S  N  S  G  D  Q  R  C  S  P  T  T  *  L  R  E  L  C  H  S  T  G  K  R  *  Q  G  T  E  L  P  M  A  E  L  *  L  S  N  K  H  F  I  T  W  D  E  T  W  V  G  F  K  I  R  D  E  *  K  H  N  I  M  E  I  S  N  *  P  S  S  R  R  L  H  F  Q  D  Q  H  Q  W  V  P  G  N  L  L  D  E  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42143" stop="42892"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLPSLFLSNKRTSTPTNVSNTNTAAKQNIFFLNYTMRNTKDYYFHQFLFLILISQFLHPILAIPTDTITPTQSLTKDQTLVSSDQLFELGFFSPGGANSDKWYIGIWYKEIQDRTIVWVANRAKPLSASSTSVLKITEIGTLLLVDGQTGNSVWSSDQTPATNVVAQLLDSGNFVIRPENDDREQSYLWQSFDYPTNTLLPGMKLGWDSKSGMNRNITSWKSAIDPAPGDYTFKINTSGFPEIYLTNKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46018" PGL_stop="48046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46018" e_stop="46188"/>
            <exon e_start="46277" e_stop="46453"/>
            <exon e_start="46686" e_stop="46760"/>
            <exon e_start="46859" e_stop="47096"/>
            <exon e_start="47183" e_stop="47333"/>
            <exon e_start="47424" e_stop="48046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.694" e_score="0.982"/>
          <exon-intron don_prob="0.434" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.955" e_score="0.960"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="0.964"/>
          <exon-intron don_prob="0.961" acc_prob="0.908" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="46018" e_stop="46188" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.694">
            <gDNA_intron_boundary i_start="46189" i_stop="46276" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="46277" e_stop="46453" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.434" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46454" i_stop="46685" i_length="232"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="46686" e_stop="46760" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="46761" i_stop="46858" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="46859" e_stop="47096" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47097" i_stop="47182" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47183" e_stop="47333" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.908">
            <gDNA_intron_boundary i_start="47334" i_stop="47423" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="47424" e_stop="48046" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46018" stop="46188"/>
              <exon start="46277" stop="46453"/>
              <exon start="46686" stop="46760"/>
              <exon start="46859" stop="47083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46922" stop="47096"/>
              <exon start="47183" stop="47333"/>
              <exon start="47424" stop="48046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAAATTGGAGGTGAAGGATCTGGAAATAGTTCTCGCAAGACAAAAATAGTTGCAATAGCTGCTGGGGTTACAGTTGGTATAGCTCTTGTGTTATTTGGACTAACCCTTTGCATCTTATCAAAGAGAAGAAAACATCAAAGTTCAATCCGAACTAAATCCGTGAACAGAG : GCACTAGCGAACGAAGTCAAGAGCTTTTGATGAATGCAACTATTATTCCAAGTAAAAGAGAATTTTCTGGTGAAACTTCCACGGAAGAGTTTGAATTGCCATTGTTTGATTACAGTACCCTAGCTACGGCAACAGAAAATTTTTCTGACGCGACTAAGTTGGGCCAAGGTGGCTTTG : GTTGTGTTGATATGGAAGAGAAGATGCTGATCTATGAATACCTGGAGAATAAAAGTTTAGATTCAATTTTGTTCA : ATAAACAGAAAAGCTCGCTGCTCGACTGGCAAAAGCGGTTCAATATTATTTGTGGGATTGCTCGGGGGCTTCTATACCTTCATCAAGATTCAAGATTTAGGATTATCCATAGAGACCTTAAAGCAAGCAATATTCTGCTTGATAAGGATTTGACCCCCAAAATATCAGATTTTGGCATGGCAAGAATTTTTGGCGGAGATGAGACTGAAGGAAATACCAAAAGAGTAGTTGGAACCTA : TGGTTACATGTCTCCGGAATATGCAATGGATGGCCTCTTCTCTGTTAAGTCCGATGTTTTCAGCTTTGGGGTTTTGGTGTTAGAAATAGTAACCGGAAAGAAGAACAGGGGATTCTATTATCAAAATAACCAACTCAACCTTCTTGGACAT : GCGTGGAGACTCTGGAAAGAAGGGAGCGGCTCAGAGCTACTAGATCCATCTTTTGGAGAATCTTTTTCTCCATCTGAAGTAATGAGATGCATACAGGTTGGACTGTTGTGTGTCCAGGAACAAGCAGAAGACCGACCAAACATGGCCACTGTGGTTTTGATGCTAGGTAGCGAAAGTGCATCACTTCCTCAGCCTAAAAACCCAGGATTTTGCCTTGGAAGAAGACCCGTTGATTCTGATTCATATTCGACTAATTATGAAGAAACTTGCACTGTCAATCAAGTTACAGTTACCATGATAGATCCCCGGTAGTTGATGGTATCGCCCTCAGAAAGTGTGTATATTACTACAAGAGGTTCACAATTTTCTCTTGTATACTATCTCAGTTTTTGTTTTTGGGTAAGTTTTGTGAAAGATAAAGAGCATAATTAGGTCTTTTTTTCTCATTACATACAATTTGTGAATTCAAAATCTTGTCTTTTTTCATCATCAATGTAATAGGCCAATCATTCCTTTTCCATATCCTTCTAAATTACTGTGTCATTATTGATGTGATTCAGAAGGAATATCTTGTGCATTCATCTTCATTTCTACTAAATAAAATTTAAACTTTTGGTCTTTTC</gDNA_template>
            <first_frame> C  K  L  E  V  K  D  L  E  I  V  L  A  R  Q  K  *  L  Q  *  L  L  G  L  Q  L  V  *  L  L  C  Y  L  D  *  P  F  A  S  Y  Q  R  E  E  N  I  K  V  Q  S  E  L  N  P  *  T  E  :  A  L  A  N  E  V  K  S  F  *  *  M  Q  L  L  F  Q  V  K  E  N  F  L  V  K  L  P  R  K  S  L  N  C  H  C  L  I  T  V  P  *  L  R  Q  Q  K  I  F  L  T  R  L  S  W  A  K  V  A  L  :  V  V  L  I  W  K  R  R  C  *  S  M  N  T  W  R  I  K  V  *  I  Q  F  C  S  :  I  N  R  K  A  R  C  S  T  G  K  S  G  S  I  L  F  V  G  L  L  G  G  F  Y  T  F  I  K  I  Q  D  L  G  L  S  I  E  T  L  K  Q  A  I  F  C  L  I  R  I  *  P  P  K  Y  Q  I  L  A  W  Q  E  F  L  A  E  M  R  L  K  E  I  P  K  E  *  L  E  P   : M  V  T  C  L  R  N  M  Q  W  M  A  S  S  L  L  S  P  M  F  S  A  L  G  F  W  C  *  K  *  *  P  E  R  R  T  G  D  S  I  I  K  I  T  N  S  T  F  L  D  M :   R  G  D  S  G  K  K  G  A  A  Q  S  Y  *  I  H  L  L  E  N  L  F  L  H  L  K  *  *  D  A  Y  R  L  D  C  C  V  S  R  N  K  Q  K  T  D  Q  T  W  P  L  W  F  *  C  *  V  A  K  V  H  H  F  L  S  L  K  T  Q  D  F  A  L  E  E  D  P  L  I  L  I  H  I  R  L  I  M  K  K  L  A  L  S  I  K  L  Q  L  P  *  *  I  P  G  S  *  W  Y  R  P  Q  K  V  C  I  L  L  Q  E  V  H  N  F  L  L  Y  T  I  S  V  F  V  F  G  *  V  L  *  K  I  K  S  I  I  R  S  F  F  L  I  T  Y  N  L  *  I  Q  N  L  V  F  F  H  H  Q  C  N  R  P  I  I  P  F  P  Y  P  S  K  L  L  C  H  Y  *  C  D  S  E  G  I  S  C  A  F  I  F  I  S  T  K  *  N  L  N  F  W  S  F  </first_frame>
            <second_frame>  A  N  W  R  *  R  I  W  K  *  F  S  Q  D  K  N  S  C  N  S  C  W  G  Y  S  W  Y  S  S  C  V  I  W  T  N  P  L  H  L  I  K  E  K  K  T  S  K  F  N  P  N  *  I  R  E  Q  R :   H  *  R  T  K  S  R  A  F  D  E  C  N  Y  Y  S  K  *  K  R  I  F  W  *  N  F  H  G  R  V  *  I  A  I  V  *  L  Q  Y  P  S  Y  G  N  R  K  F  F  *  R  D  *  V  G  P  R  W  L  W :   L  C  *  Y  G  R  E  D  A  D  L  *  I  P  G  E  *  K  F  R  F  N  F  V  Q :   *  T  E  K  L  A  A  R  L  A  K  A  V  Q  Y  Y  L  W  D  C  S  G  A  S  I  P  S  S  R  F  K  I  *  D  Y  P  *  R  P  *  S  K  Q  Y  S  A  *  *  G  F  D  P  Q  N  I  R  F  W  H  G  K  N  F  W  R  R  *  D  *  R  K  Y  Q  K  S  S  W  N  L  :  W  L  H  V  S  G  I  C  N  G  W  P  L  L  C  *  V  R  C  F  Q  L  W  G  F  G  V  R  N  S  N  R  K  E  E  Q  G  I  L  L  S  K  *  P  T  Q  P  S  W  T   : C  V  E  T  L  E  R  R  E  R  L  R  A  T  R  S  I  F  W  R  I  F  F  S  I  *  S  N  E  M  H  T  G  W  T  V  V  C  P  G  T  S  R  R  P  T  K  H  G  H  C  G  F  D  A  R  *  R  K  C  I  T  S  S  A  *  K  P  R  I  L  P  W  K  K  T  R  *  F  *  F  I  F  D  *  L  *  R  N  L  H  C  Q  S  S  Y  S  Y  H  D  R  S  P  V  V  D  G  I  A  L  R  K  C  V  Y  Y  Y  K  R  F  T  I  F  S  C  I  L  S  Q  F  L  F  L  G  K  F  C  E  R  *  R  A  *  L  G  L  F  F  S  L  H  T  I  C  E  F  K  I  L  S  F  F  I  I  N  V  I  G  Q  S  F  L  F  H  I  L  L  N  Y  C  V  I  I  D  V  I  Q  K  E  Y  L  V  H  S  S  S  F  L  L  N  K  I  *  T  F  G  L  F </second_frame>
            <third_frame>   Q  I  G  G  E  G  S  G  N  S  S  R  K  T  K  I  V  A  I  A  A  G  V  T  V  G  I  A  L  V  L  F  G  L  T  L  C  I  L  S  K  R  R  K  H  Q  S  S  I  R  T  K  S  V  N  R   : G  T  S  E  R  S  Q  E  L  L  M  N  A  T  I  I  P  S  K  R  E  F  S  G  E  T  S  T  E  E  F  E  L  P  L  F  D  Y  S  T  L  A  T  A  T  E  N  F  S  D  A  T  K  L  G  Q  G  G  F   : G  C  V  D  M  E  E  K  M  L  I  Y  E  Y  L  E  N  K  S  L  D  S  I  L  F   : N  K  Q  K  S  S  L  L  D  W  Q  K  R  F  N  I  I  C  G  I  A  R  G  L  L  Y  L  H  Q  D  S  R  F  R  I  I  H  R  D  L  K  A  S  N  I  L  L  D  K  D  L  T  P  K  I  S  D  F  G  M  A  R  I  F  G  G  D  E  T  E  G  N  T  K  R  V  V  G  T  Y :   G  Y  M  S  P  E  Y  A  M  D  G  L  F  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  T  G  K  K  N  R  G  F  Y  Y  Q  N  N  Q  L  N  L  L  G  H  :  A  W  R  L  W  K  E  G  S  G  S  E  L  L  D  P  S  F  G  E  S  F  S  P  S  E  V  M  R  C  I  Q  V  G  L  L  C  V  Q  E  Q  A  E  D  R  P  N  M  A  T  V  V  L  M  L  G  S  E  S  A  S  L  P  Q  P  K  N  P  G  F  C  L  G  R  R  P  V  D  S  D  S  Y  S  T  N  Y  E  E  T  C  T  V  N  Q  V  T  V  T  M  I  D  P  R  *  L  M  V  S  P  S  E  S  V  Y  I  T  T  R  G  S  Q  F  S  L  V  Y  Y  L  S  F  C  F  W  V  S  F  V  K  D  K  E  H  N  *  V  F  F  S  H  Y  I  Q  F  V  N  S  K  S  C  L  F  S  S  S  M  *  *  A  N  H  S  F  S  I  S  F  *  I  T  V  S  L  L  M  *  F  R  R  N  I  L  C  I  H  L  H  F  Y  *  I  K  F  K  L  L  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46020" stop="46188"/>
                    <exon start="46277" stop="46453"/>
                    <exon start="46686" stop="46760"/>
                    <exon start="46859" stop="47096"/>
                    <exon start="47183" stop="47333"/>
                    <exon start="47424" stop="47735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIGGEGSGNSSRKTKIVAIAAGVTVGIALVLFGLTLCILSKRRKHQSSIRTKSVNRGTSERSQELLMNATIIPSKREFSGETSTEEFELPLFDYSTLATATENFSDATKLGQGGFGCVDMEEKMLIYEYLENKSLDSILFNKQKSSLLDWQKRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKDLTPKISDFGMARIFGGDETEGNTKRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIVTGKKNRGFYYQNNQLNLLGHAWRLWKEGSGSELLDPSFGESFSPSEVMRCIQVGLLCVQEQAEDRPNMATVVLMLGSESASLPQPKNPGFCLGRRPVDSDSYSTNYEETCTVNQVTVTMIDPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49178" PGL_stop="52401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49178" e_stop="49608"/>
            <exon e_start="49729" e_stop="49940"/>
            <exon e_start="50460" e_stop="50480"/>
            <exon e_start="50566" e_stop="50878"/>
            <exon e_start="51207" e_stop="52401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.389" e_score="0.995"/>
          <exon-intron don_prob="0.419" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.853" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.984"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="49178" e_stop="49608" e_length="431"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.389">
            <gDNA_intron_boundary i_start="49609" i_stop="49728" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49729" e_stop="49940" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.419" acc_prob="0.591">
            <gDNA_intron_boundary i_start="49941" i_stop="50459" i_length="519"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50460" e_stop="50480" e_length="21"/>
          </exon>
          <intron i_serial="3" don_prob="0.853" acc_prob="0.882">
            <gDNA_intron_boundary i_start="50481" i_stop="50565" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="50566" e_stop="50878" e_length="313"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50879" i_stop="51206" i_length="328"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="51207" e_stop="52401" e_length="1195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49178" stop="49608"/>
              <exon start="49729" stop="49940"/>
              <exon start="50460" stop="50480"/>
              <exon start="50566" stop="50878"/>
              <exon start="51207" stop="52401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCATAATACTAATATTGAAGTCTCAATTCTTTTCATCACTTGGAAAGAGTAGGAAAGAAAAGAAAAAGAATCAAGAGAGTACTAATGTATATGTGTAGGGGAACCATTCTGCTTAAATGTTTTGCATTAATCATCTTTCTGCAAACATGCAATGCTAGGAAAAGCAAACACTACCACTGTCCTCCTTCTGCTTGTGGCCATATCCGTAACATAAGCAACCCTTTTCGCTTAAACACTGATCCAAAAGATTGCCGTTATCCAGGATATGAATTAACTTGTGAAGGTAACCAAACACTTATGTGGTTATTCTCTGTGAAGTTGCACGTTCAAGGCATCAACTATGATAACAAGACAATTCGCCTGGTAGATCCAACTTTACAAACACAAGATGATCTATGCTCTTTCAGATCTCAGTTTAACTTCAACAA : TGGCTGCAAATTAAGCAGATACACTTATTTAAAGATTGGAGAAACGAATGCATCAGAAGTCAATGATGGATGCAGAGTACAATTTATAGGCCTGACCTCATGGCCTAATATTAAAGATGCAGAGAACAACATTTCCCTTTCTGATTTTCATCAAGCAATCCTCTACGGATTTGAGCTTCGTTATTATATGTGGAGTTCTCCACAAAAAAAAA : GTGATATTGAACAGCTTTTCT : GGATCAGTCTGTCGATAGTTGAGTATTTCGTATTTAAGCGCCAGATTTATGGACGAAATTGGATAAGTAAGACCGTCTTCAATATAATTATATATGTTCTGCTTTTTGATTAAAAAAAAACGTTTTCCATCCTCTGATACGTGTGAAATTAGGAAAGCAATGGATTCACTCACCATAATTTAATTTCTTTTATGTGTTGTAGTTGTTATTTCTCTTTTATATATACTTTAAGTTCTCCATTGATCTCTCATTCTATTTTTTTGCGCTTTAATCTAACCAGGGACCATTCTGTCGCTACTTCTGTATGTCATGG : TTGTATTTCTGGTGATCAAATTCAAAAGGAGGCATTTGTCGATGTATGATACGATTGAAGGGTTTTTACAATCACAAAATAATTTCATGCCAATCAGATATAATTACTCCCACATAAAGAGAATGACAAGAGGATTCAAAGAGAAATTAGGTGAGGGAGGTTATGGCAGTGTATACAAAGGAAAGCTTCAAAGTGGAAGGGATGTGGCAGTGAAGATGTTAAGCAAGCCTAAATCTGGTGGGCAAGATTTTATGAATGAAGTAGCTAGCATTGGAAGGATTCATCATGTCAATGTGGTTGGACTCGTGGGATATTGTGTTGAGGGAACTAAGCGTGCTCTTGTATACGACTTCATGCCCAATGGATCACTCGACAAGTATATTAGCATCAGTGAAGAAGGAAGTCCTCTGTTAAGTTGGCAGAGGAAGTATGACATTATTCTTGGAGTGGCTCGAGGAACTGGATATTTGCATCGAGGCTGTGATGTACAAATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGGCTTGCAAAATTATATCCACCAGGTAATAGCATAGTGACTCTCACAGCTGCTCGAGGAACGATTGGCTATGTAGCTCCAGAGTTGATCAGCAGAAGCATCGGGGAAATCTCTTACAAAGCTGATGTTTACAGCTTTGGAATGCTGCTCATGGAAATGCTCGACTTGAAAAGACCTGAAGTTGCAAATGAAGAGAATTCCAGCCAATATTTTCCTTATTATATTTACGATAAGTTCAACAAGGGGAAGGAGATTGTGGTGGATGAAGAAGCAAATGATGATGAAAAGAAGATGGCTAGAAAGCTCGCTTTAGTTGCGTTATGGTGCATACAAACAAATCCGATACAACGCCCTTCGATGAGTAGAGTATTAGAAATGCTTGAAGGTGAAGTTGAAGTGCTAGAAGTACCTCCTCAGCCTCTTCAATCTCAACCGATTGTTCATCAGATCATGGGAAGTTCTATGACATTTTCTTCTGATTCAATGGCTTTGTTAGAAAATACGGCTGATAATCTCGTTGAAGTAGACATTTCTTCTGATTGACCATAGTTGATGTAATATTTATGTGAAACAAATAGCCCAGCCAACAATGTTTGGGACAAAGGGTGTTGTTGCAATTGTTGTCCTAGTTT</gDNA_template>
            <first_frame> H  S  *  Y  *  Y  *  S  L  N  S  F  H  H  L  E  R  V  G  K  K  R  K  R  I  K  R  V  L  M  Y  M  C  R  G  T  I  L  L  K  C  F  A  L  I  I  F  L  Q  T  C  N  A  R  K  S  K  H  Y  H  C  P  P  S  A  C  G  H  I  R  N  I  S  N  P  F  R  L  N  T  D  P  K  D  C  R  Y  P  G  Y  E  L  T  C  E  G  N  Q  T  L  M  W  L  F  S  V  K  L  H  V  Q  G  I  N  Y  D  N  K  T  I  R  L  V  D  P  T  L  Q  T  Q  D  D  L  C  S  F  R  S  Q  F  N  F  N  N :   G  C  K  L  S  R  Y  T  Y  L  K  I  G  E  T  N  A  S  E  V  N  D  G  C  R  V  Q  F  I  G  L  T  S  W  P  N  I  K  D  A  E  N  N  I  S  L  S  D  F  H  Q  A  I  L  Y  G  F  E  L  R  Y  Y  M  W  S  S  P  Q  K  K   : S  D  I  E  Q  L  F   : W  I  S  L  S  I  V  E  Y  F  V  F  K  R  Q  I  Y  G  R  N  W  I  S  K  T  V  F  N  I  I  I  Y  V  L  L  F  D  *  K  K  T  F  S  I  L  *  Y  V  *  N  *  E  S  N  G  F  T  H  H  N  L  I  S  F  M  C  C  S  C  Y  F  S  F  I  Y  T  L  S  S  P  L  I  S  H  S  I  F  L  R  F  N  L  T  R  D  H  S  V  A  T  S  V  C  H  G :   C  I  S  G  D  Q  I  Q  K  E  A  F  V  D  V  *  Y  D  *  R  V  F  T  I  T  K  *  F  H  A  N  Q  I  *  L  L  P  H  K  E  N  D  K  R  I  Q  R  E  I  R  *  G  R  L  W  Q  C  I  Q  R  K  A  S  K  W  K  G  C  G  S  E  D  V  K  Q  A  *  I  W  W  A  R  F  Y  E  *  S  S  *  H  W  K  D  S  S  C  Q  C  G  W  T  R  G  I  L  C  *  G  N  *  A  C  S  C  I  R  L  H  A  Q  W  I  T  R  Q  V  Y  *  H  Q  *  R  R  K  S  S  V  K  L  A  E  E  V  *  H  Y  S  W  S  G  S  R  N  W  I  F  A  S  R  L  *  C  T  N  F  A  F  *  H  Q  T  T  Q  H  S  F  G  *  E  F  H  S  K  D  F  *  L  W  A  C  K  I  I  S  T  R  *  *  H  S  D  S  H  S  C  S  R  N  D  W  L  C  S  S  R  V  D  Q  Q  K  H  R  G  N  L  L  Q  S  *  C  L  Q  L  W  N  A  A  H  G  N  A  R  L  E  K  T  *  S  C  K  *  R  E  F  Q  P  I  F  S  L  L  Y  L  R  *  V  Q  Q  G  E  G  D  C  G  G  *  R  S  K  *  *  *  K  E  D  G  *  K  A  R  F  S  C  V  M  V  H  T  N  K  S  D  T  T  P  F  D  E  *  S  I  R  N  A  *  R  *  S  *  S  A  R  S  T  S  S  A  S  S  I  S  T  D  C  S  S  D  H  G  K  F  Y  D  I  F  F  *  F  N  G  F  V  R  K  Y  G  *  *  S  R  *  S  R  H  F  F  *  L  T  I  V  D  V  I  F  M  *  N  K  *  P  S  Q  Q  C  L  G  Q  R  V  L  L  Q  L  L  S  *  F </first_frame>
            <second_frame>  I  H  N  T  N  I  E  V  S  I  L  F  I  T  W  K  E  *  E  R  K  E  K  E  S  R  E  Y  *  C  I  C  V  G  E  P  F  C  L  N  V  L  H  *  S  S  F  C  K  H  A  M  L  G  K  A  N  T  T  T  V  L  L  L  L  V  A  I  S  V  T  *  A  T  L  F  A  *  T  L  I  Q  K  I  A  V  I  Q  D  M  N  *  L  V  K  V  T  K  H  L  C  G  Y  S  L  *  S  C  T  F  K  A  S  T  M  I  T  R  Q  F  A  W  *  I  Q  L  Y  K  H  K  M  I  Y  A  L  S  D  L  S  L  T  S  T   : M  A  A  N  *  A  D  T  L  I  *  R  L  E  K  R  M  H  Q  K  S  M  M  D  A  E  Y  N  L  *  A  *  P  H  G  L  I  L  K  M  Q  R  T  T  F  P  F  L  I  F  I  K  Q  S  S  T  D  L  S  F  V  I  I  C  G  V  L  H  K  K  K  :  V  I  L  N  S  F  S  :  G  S  V  C  R  *  L  S  I  S  Y  L  S  A  R  F  M  D  E  I  G  *  V  R  P  S  S  I  *  L  Y  M  F  C  F  L  I  K  K  K  R  F  P  S  S  D  T  C  E  I  R  K  A  M  D  S  L  T  I  I  *  F  L  L  C  V  V  V  V  I  S  L  L  Y  I  L  *  V  L  H  *  S  L  I  L  F  F  C  A  L  I  *  P  G  T  I  L  S  L  L  L  Y  V  M   : V  V  F  L  V  I  K  F  K  R  R  H  L  S  M  Y  D  T  I  E  G  F  L  Q  S  Q  N  N  F  M  P  I  R  Y  N  Y  S  H  I  K  R  M  T  R  G  F  K  E  K  L  G  E  G  G  Y  G  S  V  Y  K  G  K  L  Q  S  G  R  D  V  A  V  K  M  L  S  K  P  K  S  G  G  Q  D  F  M  N  E  V  A  S  I  G  R  I  H  H  V  N  V  V  G  L  V  G  Y  C  V  E  G  T  K  R  A  L  V  Y  D  F  M  P  N  G  S  L  D  K  Y  I  S  I  S  E  E  G  S  P  L  L  S  W  Q  R  K  Y  D  I  I  L  G  V  A  R  G  T  G  Y  L  H  R  G  C  D  V  Q  I  L  H  F  D  I  K  P  H  N  I  L  L  D  E  N  F  I  P  K  I  S  D  F  G  L  A  K  L  Y  P  P  G  N  S  I  V  T  L  T  A  A  R  G  T  I  G  Y  V  A  P  E  L  I  S  R  S  I  G  E  I  S  Y  K  A  D  V  Y  S  F  G  M  L  L  M  E  M  L  D  L  K  R  P  E  V  A  N  E  E  N  S  S  Q  Y  F  P  Y  Y  I  Y  D  K  F  N  K  G  K  E  I  V  V  D  E  E  A  N  D  D  E  K  K  M  A  R  K  L  A  L  V  A  L  W  C  I  Q  T  N  P  I  Q  R  P  S  M  S  R  V  L  E  M  L  E  G  E  V  E  V  L  E  V  P  P  Q  P  L  Q  S  Q  P  I  V  H  Q  I  M  G  S  S  M  T  F  S  S  D  S  M  A  L  L  E  N  T  A  D  N  L  V  E  V  D  I  S  S  D  *  P  *  L  M  *  Y  L  C  E  T  N  S  P  A  N  N  V  W  D  K  G  C  C  C  N  C  C  P  S   </second_frame>
            <third_frame>   F  I  I  L  I  L  K  S  Q  F  F  S  S  L  G  K  S  R  K  E  K  K  K  N  Q  E  S  T  N  V  Y  V  *  G  N  H  S  A  *  M  F  C  I  N  H  L  S  A  N  M  Q  C  *  E  K  Q  T  L  P  L  S  S  F  C  L  W  P  Y  P  *  H  K  Q  P  F  S  L  K  H  *  S  K  R  L  P  L  S  R  I  *  I  N  L  *  R  *  P  N  T  Y  V  V  I  L  C  E  V  A  R  S  R  H  Q  L  *  *  Q  D  N  S  P  G  R  S  N  F  T  N  T  R  *  S  M  L  F  Q  I  S  V  *  L  Q  Q  :  W  L  Q  I  K  Q  I  H  L  F  K  D  W  R  N  E  C  I  R  S  Q  *  W  M  Q  S  T  I  Y  R  P  D  L  M  A  *  Y  *  R  C  R  E  Q  H  F  P  F  *  F  S  S  S  N  P  L  R  I  *  A  S  L  L  Y  V  E  F  S  T  K  K  K :   *  Y  *  T  A  F  L :   D  Q  S  V  D  S  *  V  F  R  I  *  A  P  D  L  W  T  K  L  D  K  *  D  R  L  Q  Y  N  Y  I  C  S  A  F  *  L  K  K  N  V  F  H  P  L  I  R  V  K  L  G  K  Q  W  I  H  S  P  *  F  N  F  F  Y  V  L  *  L  L  F  L  F  Y  I  Y  F  K  F  S  I  D  L  S  F  Y  F  F  A  L  *  S  N  Q  G  P  F  C  R  Y  F  C  M  S  W  :  L  Y  F  W  *  S  N  S  K  G  G  I  C  R  C  M  I  R  L  K  G  F  Y  N  H  K  I  I  S  C  Q  S  D  I  I  T  P  T  *  R  E  *  Q  E  D  S  K  R  N  *  V  R  E  V  M  A  V  Y  T  K  E  S  F  K  V  E  G  M  W  Q  *  R  C  *  A  S  L  N  L  V  G  K  I  L  *  M  K  *  L  A  L  E  G  F  I  M  S  M  W  L  D  S  W  D  I  V  L  R  E  L  S  V  L  L  Y  T  T  S  C  P  M  D  H  S  T  S  I  L  A  S  V  K  K  E  V  L  C  *  V  G  R  G  S  M  T  L  F  L  E  W  L  E  E  L  D  I  C  I  E  A  V  M  Y  K  F  C  I  L  T  S  N  H  T  T  F  F  W  M  R  I  S  F  Q  R  F  L  T  L  G  L  Q  N  Y  I  H  Q  V  I  A  *  *  L  S  Q  L  L  E  E  R  L  A  M  *  L  Q  S  *  S  A  E  A  S  G  K  S  L  T  K  L  M  F  T  A  L  E  C  C  S  W  K  C  S  T  *  K  D  L  K  L  Q  M  K  R  I  P  A  N  I  F  L  I  I  F  T  I  S  S  T  R  G  R  R  L  W  W  M  K  K  Q  M  M  M  K  R  R  W  L  E  S  S  L  *  L  R  Y  G  A  Y  K  Q  I  R  Y  N  A  L  R  *  V  E  Y  *  K  C  L  K  V  K  L  K  C  *  K  Y  L  L  S  L  F  N  L  N  R  L  F  I  R  S  W  E  V  L  *  H  F  L  L  I  Q  W  L  C  *  K  I  R  L  I  I  S  L  K  *  T  F  L  L  I  D  H  S  *  C  N  I  Y  V  K  Q  I  A  Q  P  T  M  F  G  T  K  G  V  V  A  I  V  V  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50842" stop="50878"/>
                    <exon start="51207" stop="52312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGTILSLLLYVMVVFLVIKFKRRHLSMYDTIEGFLQSQNNFMPIRYNYSHIKRMTRGFKEKLGEGGYGSVYKGKLQSGRDVAVKMLSKPKSGGQDFMNEVASIGRIHHVNVVGLVGYCVEGTKRALVYDFMPNGSLDKYISISEEGSPLLSWQRKYDIILGVARGTGYLHRGCDVQILHFDIKPHNILLDENFIPKISDFGLAKLYPPGNSIVTLTAARGTIGYVAPELISRSIGEISYKADVYSFGMLLMEMLDLKRPEVANEENSSQYFPYYIYDKFNKGKEIVVDEEANDDEKKMARKLALVALWCIQTNPIQRPSMSRVLEMLEGEVEVLEVPPQPLQSQPIVHQIMGSSMTFSSDSMALLENTADNLVEVDISSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49199" stop="49608"/>
                    <exon start="49729" stop="49940"/>
                    <exon start="50460" stop="50480"/>
                    <exon start="50566" stop="50678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLNSFHHLERVGKKRKRIKRVLMYMCRGTILLKCFALIIFLQTCNARKSKHYHCPPSACGHIRNISNPFRLNTDPKDCRYPGYELTCEGNQTLMWLFSVKLHVQGINYDNKTIRLVDPTLQTQDDLCSFRSQFNFNNGCKLSRYTYLKIGETNASEVNDGCRVQFIGLTSWPNIKDAENNISLSDFHQAILYGFELRYYMWSSPQKKSDIEQLFWISLSIVEYFVFKRQIYGRNWISKTVFNIIIYVLLFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80742" PGL_stop="81487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80742" e_stop="81487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="80742" e_stop="81487" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80742" stop="81487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACGTTACATCGGAATTTGGTATAACAATGTTCCTGAACTTACTGTTGTTTGGGTTGCCAACAGAGATAACCCTGTTAATGGCACATCTGGGATTCTCACCATCGATTCAACTGGGAATCTTGTTATACGTCTCGATGCGGAAAGAAAAACTGCAGCCTGGAGAACAAATGTTTCTTCAGCTAGGAAACGAGCAGACTCGTATACAGCTAAGCTGGAGGATTCAGGGAATTTTGTGTTGTTTCAAGACTCCAAAATGGATGTTATTGAATGGCAGAGCTTTGATTATCCTACCAATACTCTGCTTCCTTCAATGAAATATGGGATAGACAAGAGAACGGGATTGAACCGGTTTCTGACATCATGGAAATCGTTGATCGATCCAGGCACTGGAGAGTATCGTTACACAATGGAGCTCAATGGGACACCTCAAGTTTTCTTGTACAAGAACTCTAGCAGGATTTGGCGGACAGGATCCTGGACGGGTCATGGTTGGAGTGGTGTACCAGAAATGAGCCCGCGATTCATCTTCAGCCTTAGTTATGTAGACAATGATACCGAGGTTTCCTTGACATATGGCATACATGACAGTTCAATAATCTCAAGAATGGTCCTGAATGAATCTGGGATCGTGAACCGGTTAACTTGGCAAGAGAGTGAGCGAAAGTGGGTGCAATTCTGGTCTGCCCCTAAAGACCCTTGTGACAATTATGAACATTGTGGAGCATTTAGCAATTGGCAATCTG</gDNA_template>
            <first_frame> *  T  L  H  R  N  L  V  *  Q  C  S  *  T  Y  C  C  L  G  C  Q  Q  R  *  P  C  *  W  H  I  W  D  S  H  H  R  F  N  W  E  S  C  Y  T  S  R  C  G  K  K  N  C  S  L  E  N  K  C  F  F  S  *  E  T  S  R  L  V  Y  S  *  A  G  G  F  R  E  F  C  V  V  S  R  L  Q  N  G  C  Y  *  M  A  E  L  *  L  S  Y  Q  Y  S  A  S  F  N  E  I  W  D  R  Q  E  N  G  I  E  P  V  S  D  I  M  E  I  V  D  R  S  R  H  W  R  V  S  L  H  N  G  A  Q  W  D  T  S  S  F  L  V  Q  E  L  *  Q  D  L  A  D  R  I  L  D  G  S  W  L  E  W  C  T  R  N  E  P  A  I  H  L  Q  P  *  L  C  R  Q  *  Y  R  G  F  L  D  I  W  H  T  *  Q  F  N  N  L  K  N  G  P  E  *  I  W  D  R  E  P  V  N  L  A  R  E  *  A  K  V  G  A  I  L  V  C  P  *  R  P  L  *  Q  L  *  T  L  W  S  I  *  Q  L  A  I   </first_frame>
            <second_frame>  K  R  Y  I  G  I  W  Y  N  N  V  P  E  L  T  V  V  W  V  A  N  R  D  N  P  V  N  G  T  S  G  I  L  T  I  D  S  T  G  N  L  V  I  R  L  D  A  E  R  K  T  A  A  W  R  T  N  V  S  S  A  R  K  R  A  D  S  Y  T  A  K  L  E  D  S  G  N  F  V  L  F  Q  D  S  K  M  D  V  I  E  W  Q  S  F  D  Y  P  T  N  T  L  L  P  S  M  K  Y  G  I  D  K  R  T  G  L  N  R  F  L  T  S  W  K  S  L  I  D  P  G  T  G  E  Y  R  Y  T  M  E  L  N  G  T  P  Q  V  F  L  Y  K  N  S  S  R  I  W  R  T  G  S  W  T  G  H  G  W  S  G  V  P  E  M  S  P  R  F  I  F  S  L  S  Y  V  D  N  D  T  E  V  S  L  T  Y  G  I  H  D  S  S  I  I  S  R  M  V  L  N  E  S  G  I  V  N  R  L  T  W  Q  E  S  E  R  K  W  V  Q  F  W  S  A  P  K  D  P  C  D  N  Y  E  H  C  G  A  F  S  N  W  Q  S  </second_frame>
            <third_frame>   N  V  T  S  E  F  G  I  T  M  F  L  N  L  L  L  F  G  L  P  T  E  I  T  L  L  M  A  H  L  G  F  S  P  S  I  Q  L  G  I  L  L  Y  V  S  M  R  K  E  K  L  Q  P  G  E  Q  M  F  L  Q  L  G  N  E  Q  T  R  I  Q  L  S  W  R  I  Q  G  I  L  C  C  F  K  T  P  K  W  M  L  L  N  G  R  A  L  I  I  L  P  I  L  C  F  L  Q  *  N  M  G  *  T  R  E  R  D  *  T  G  F  *  H  H  G  N  R  *  S  I  Q  A  L  E  S  I  V  T  Q  W  S  S  M  G  H  L  K  F  S  C  T  R  T  L  A  G  F  G  G  Q  D  P  G  R  V  M  V  G  V  V  Y  Q  K  *  A  R  D  S  S  S  A  L  V  M  *  T  M  I  P  R  F  P  *  H  M  A  Y  M  T  V  Q  *  S  Q  E  W  S  *  M  N  L  G  S  *  T  G  *  L  G  K  R  V  S  E  S  G  C  N  S  G  L  P  L  K  T  L  V  T  I  M  N  I  V  E  H  L  A  I  G  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80743" stop="81486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRYIGIWYNNVPELTVVWVANRDNPVNGTSGILTIDSTGNLVIRLDAERKTAAWRTNVSSARKRADSYTAKLEDSGNFVLFQDSKMDVIEWQSFDYPTNTLLPSMKYGIDKRTGLNRFLTSWKSLIDPGTGEYRYTMELNGTPQVFLYKNSSRIWRTGSWTGHGWSGVPEMSPRFIFSLSYVDNDTEVSLTYGIHDSSIISRMVLNESGIVNRLTWQESERKWVQFWSAPKDPCDNYEHCGAFSNWQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="82052" PGL_stop="83356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82052" e_stop="82142"/>
            <exon e_start="82332" e_stop="82489"/>
            <exon e_start="82646" e_stop="82856"/>
            <exon e_start="82979" e_stop="83251"/>
            <exon e_start="83351" e_stop="83356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.933" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.671" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="0.989"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="82052" e_stop="82142" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.933">
            <gDNA_intron_boundary i_start="82143" i_stop="82331" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82332" e_stop="82489" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.893">
            <gDNA_intron_boundary i_start="82490" i_stop="82645" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82646" e_stop="82856" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.671" acc_prob="0.623">
            <gDNA_intron_boundary i_start="82857" i_stop="82978" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="82979" e_stop="83251" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83252" i_stop="83350" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="0.833">
            <gDNA_exon_boundary e_start="83351" e_stop="83356" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82052" stop="82142"/>
              <exon start="82332" stop="82489"/>
              <exon start="82646" stop="82856"/>
              <exon start="82979" stop="83251"/>
              <exon start="83351" stop="83356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGATAGGGATTCTAGTAGGGTCTGCTGCAGCAATAATTCTTGCACTCTCTTTGGCATGTTGTTTGGTGATCAATATAAGGGGAAATG : ATAATGAAAGAAGTGAAAGTTTAGCATCCTATGACGGCATGGAAGAAAGTAAACATGCAGAAATCACTATCTTTGATCTAACCACAATAACTAATGCCACTGATCAGTTCTCTGATGCTAACAAACTTGGTGAAGGAGGATTTGGTAGCGTATACAAG : GGTCACCTGACAGATGGACAAGTAATAGCTGTCAAAAGACTTTCAGTAACTTCGGGGCAAGGGACGGAGGAGTTCAAGAATGAAGTCACAGTAATTGCAAGACTTCAGCACAGAAATTTGGTGAGGCTTTTAGGATGTTGCGTTCAACGAGGAGAGAAGATGTTGGTTTATGAATATATGCCAAACAAATCCTTGGACAGTTTTATTTTTG : ATCTCTTATTCACCAACTTTCAAACGGTGATCTAGATAAAACAAAAGGGTCTTTGTTGGATTGGGGAAAACGGTTTGGAATCATACATGGGATTGCACGAGGAATGTTATACCTTCACCAAGACTCTAGACTAAGAATTATTCATAGAGACCTAAAAGCAAGCAATGTTTTACTCGATGCCTCCATGCAACCGAAAATATCAGACTTTGGAATGGCCAGAATATTTGGAGGTGACCAAATGGAAGCAAACACAAATCGAGTTGTTGGAACATA : TGGTTA</gDNA_template>
            <first_frame> R  M  I  G  I  L  V  G  S  A  A  A  I  I  L  A  L  S  L  A  C  C  L  V  I  N  I  R  G  N   : D  N  E  R  S  E  S  L  A  S  Y  D  G  M  E  E  S  K  H  A  E  I  T  I  F  D  L  T  T  I  T  N  A  T  D  Q  F  S  D  A  N  K  L  G  E  G  G  F  G  S  V  Y  K  :  G  H  L  T  D  G  Q  V  I  A  V  K  R  L  S  V  T  S  G  Q  G  T  E  E  F  K  N  E  V  T  V  I  A  R  L  Q  H  R  N  L  V  R  L  L  G  C  C  V  Q  R  G  E  K  M  L  V  Y  E  Y  M  P  N  K  S  L  D  S  F  I  F   : D  L  L  F  T  N  F  Q  T  V  I  *  I  K  Q  K  G  L  C  W  I  G  E  N  G  L  E  S  Y  M  G  L  H  E  E  C  Y  T  F  T  K  T  L  D  *  E  L  F  I  E  T  *  K  Q  A  M  F  Y  S  M  P  P  C  N  R  K  Y  Q  T  L  E  W  P  E  Y  L  E  V  T  K  W  K  Q  T  Q  I  E  L  L  E  H   : M  V  </first_frame>
            <second_frame>  E  *  *  G  F  *  *  G  L  L  Q  Q  *  F  L  H  S  L  W  H  V  V  W  *  S  I  *  G  E  M  :  I  M  K  E  V  K  V  *  H  P  M  T  A  W  K  K  V  N  M  Q  K  S  L  S  L  I  *  P  Q  *  L  M  P  L  I  S  S  L  M  L  T  N  L  V  K  E  D  L  V  A  Y  T  R :   V  T  *  Q  M  D  K  *  *  L  S  K  D  F  Q  *  L  R  G  K  G  R  R  S  S  R  M  K  S  Q  *  L  Q  D  F  S  T  E  I  W  *  G  F  *  D  V  A  F  N  E  E  R  R  C  W  F  M  N  I  C  Q  T  N  P  W  T  V  L  F  L  :  I  S  Y  S  P  T  F  K  R  *  S  R  *  N  K  R  V  F  V  G  L  G  K  T  V  W  N  H  T  W  D  C  T  R  N  V  I  P  S  P  R  L  *  T  K  N  Y  S  *  R  P  K  S  K  Q  C  F  T  R  C  L  H  A  T  E  N  I  R  L  W  N  G  Q  N  I  W  R  *  P  N  G  S  K  H  K  S  S  C  W  N  I  :  W  L </second_frame>
            <third_frame>   N  D  R  D  S  S  R  V  C  C  S  N  N  S  C  T  L  F  G  M  L  F  G  D  Q  Y  K  G  K  * :   *  *  K  K  *  K  F  S  I  L  *  R  H  G  R  K  *  T  C  R  N  H  Y  L  *  S  N  H  N  N  *  C  H  *  S  V  L  *  C  *  Q  T  W  *  R  R  I  W  *  R  I  Q   : G  S  P  D  R  W  T  S  N  S  C  Q  K  T  F  S  N  F  G  A  R  D  G  G  V  Q  E  *  S  H  S  N  C  K  T  S  A  Q  K  F  G  E  A  F  R  M  L  R  S  T  R  R  E  D  V  G  L  *  I  Y  A  K  Q  I  L  G  Q  F  Y  F  * :   S  L  I  H  Q  L  S  N  G  D  L  D  K  T  K  G  S  L  L  D  W  G  K  R  F  G  I  I  H  G  I  A  R  G  M  L  Y  L  H  Q  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  V  L  L  D  A  S  M  Q  P  K  I  S  D  F  G  M  A  R  I  F  G  G  D  Q  M  E  A  N  T  N  R  V  V  G  T  Y :   G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82052" stop="82142"/>
                    <exon start="82332" stop="82489"/>
                    <exon start="82646" stop="82856"/>
                    <exon start="82979" stop="83013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMIGILVGSAAAIILALSLACCLVINIRGNDNERSESLASYDGMEESKHAEITIFDLTTITNATDQFSDANKLGEGGFGSVYKGHLTDGQVIAVKRLSVTSGQGTEEFKNEVTVIARLQHRNLVRLLGCCVQRGEKMLVYEYMPNKSLDSFIFDLLFTNFQTVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="84246" PGL_stop="83989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84246" e_stop="83989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="84246" e_stop="83989" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84246" stop="83989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAATGTGAATGCGCTTCCATTAACTGCCTTAACACAACTGACAAAGGGCGCCATTTAATTCACAGATGGAGTAGAAACCCTCTGTGTTTATGCTTCTTTCCTATCAATCCTTTGCCACCCACCTACCTTTAAGTCTATAACATGGACCATGGGGAATCATAAGTTAGATAGTAAAGAAAAAGGAATTTTGTATTTCTTTCGAAATAGTTATTGAATAGTTAGCATAAGCTCTAGCGACCATGAACTGTTGAAATAG</gDNA_template>
            <first_frame> L  N  V  N  A  L  P  L  T  A  L  T  Q  L  T  K  G  A  I  *  F  T  D  G  V  E  T  L  C  V  Y  A  S  F  L  S  I  L  C  H  P  P  T  F  K  S  I  T  W  T  M  G  N  H  K  L  D  S  K  E  K  G  I  L  Y  F  F  R  N  S  Y  *  I  V  S  I  S  S  S  D  H  E  L  L  K  * </first_frame>
            <second_frame>  *  M  *  M  R  F  H  *  L  P  *  H  N  *  Q  R  A  P  F  N  S  Q  M  E  *  K  P  S  V  F  M  L  L  S  Y  Q  S  F  A  T  H  L  P  L  S  L  *  H  G  P  W  G  I  I  S  *  I  V  K  K  K  E  F  C  I  S  F  E  I  V  I  E  *  L  A  *  A  L  A  T  M  N  C  *  N   </second_frame>
            <third_frame>   E  C  E  C  A  S  I  N  C  L  N  T  T  D  K  G  R  H  L  I  H  R  W  S  R  N  P  L  C  L  C  F  F  P  I  N  P  L  P  P  T  Y  L  *  V  Y  N  M  D  H  G  E  S  *  V  R  *  *  R  K  R  N  F  V  F  L  S  K  *  L  L  N  S  *  H  K  L  *  R  P  *  T  V  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0323A14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="95726" PGL_stop="96501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95726" e_stop="96501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="95726" e_stop="96501" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95726" stop="96501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATTGTTGTAACTCAATTCATTCAATTCTTATTAAGATTTAGCTATTTTATTTGTTCTTTTATGAATTTTAAGTAGCTAAAAATTATTGTTTTGTTTATCCTAACAATATATATAACATGTGACATATCAAATTAGAAAATGTCTTGTGACAATCTCTCCAGAATCAATTTGGACAGCATATCAACCCAATTCATTGAGCTAGTAAATGGACGGGTCAGTAACCCTCCCACACTTGAACAGATTGCCTGATGACTGATGTATCATAATCAGCTGACTAACGACCATCAGGTGTAGTAATAGTCACCTCATTGATCGAAGATGGTGTTGTTTCTGTGGTACCCGATTCAGAGTTGGGGGTAATCAATGGCTGCTTCGGGGAGGGAACCGTTGCTTCATTACTTAGCATGAATAGAACTGATGACATGGTTGGTCTGTCCCCTGCATTCACTTGCAAACACAATAGCCCTACTTGAATACAGCGTAGTGCTTCCTCACCGGGGCAAGAATCAACTATAGTTGGATCTATCAGCATGAAGGCCTTGCCATCATTCCAAAGCTCCCAGGCCTGAATCAGTAGTTCATTTAAATGGATAAATTTGATTCTTAATCAAAGAAAGATTCAAACATTTGCATTTCACAACTTACCTGTCGTATTAAATTTGGAGGGGAATCACTATTATAAGAGATTCTGTTCTTTTTTCCACTGATGATCTCCAATAATATGACACCAAAGCTAAAGACATCAGATTTTACTGAGAAGAGACCAGCTAGAG</gDNA_template>
            <first_frame> K  I  V  V  T  Q  F  I  Q  F  L  L  R  F  S  Y  F  I  C  S  F  M  N  F  K  *  L  K  I  I  V  L  F  I  L  T  I  Y  I  T  C  D  I  S  N  *  K  M  S  C  D  N  L  S  R  I  N  L  D  S  I  S  T  Q  F  I  E  L  V  N  G  R  V  S  N  P  P  T  L  E  Q  I  A  *  *  L  M  Y  H  N  Q  L  T  N  D  H  Q  V  *  *  *  S  P  H  *  S  K  M  V  L  F  L  W  Y  P  I  Q  S  W  G  *  S  M  A  A  S  G  R  E  P  L  L  H  Y  L  A  *  I  E  L  M  T  W  L  V  C  P  L  H  S  L  A  N  T  I  A  L  L  E  Y  S  V  V  L  P  H  R  G  K  N  Q  L  *  L  D  L  S  A  *  R  P  C  H  H  S  K  A  P  R  P  E  S  V  V  H  L  N  G  *  I  *  F  L  I  K  E  R  F  K  H  L  H  F  T  T  Y  L  S  Y  *  I  W  R  G  I  T  I  I  R  D  S  V  L  F  S  T  D  D  L  Q  *  Y  D  T  K  A  K  D  I  R  F  Y  *  E  E  T  S  *   </first_frame>
            <second_frame>  R  L  L  *  L  N  S  F  N  S  Y  *  D  L  A  I  L  F  V  L  L  *  I  L  S  S  *  K  L  L  F  C  L  S  *  Q  Y  I  *  H  V  T  Y  Q  I  R  K  C  L  V  T  I  S  P  E  S  I  W  T  A  Y  Q  P  N  S  L  S  *  *  M  D  G  S  V  T  L  P  H  L  N  R  L  P  D  D  *  C  I  I  I  S  *  L  T  T  I  R  C  S  N  S  H  L  I  D  R  R  W  C  C  F  C  G  T  R  F  R  V  G  G  N  Q  W  L  L  R  G  G  N  R  C  F  I  T  *  H  E  *  N  *  *  H  G  W  S  V  P  C  I  H  L  Q  T  Q  *  P  Y  L  N  T  A  *  C  F  L  T  G  A  R  I  N  Y  S  W  I  Y  Q  H  E  G  L  A  I  I  P  K  L  P  G  L  N  Q  *  F  I  *  M  D  K  F  D  S  *  S  K  K  D  S  N  I  C  I  S  Q  L  T  C  R  I  K  F  G  G  E  S  L  L  *  E  I  L  F  F  F  P  L  M  I  S  N  N  M  T  P  K  L  K  T  S  D  F  T  E  K  R  P  A  R  </second_frame>
            <third_frame>   D  C  C  N  S  I  H  S  I  L  I  K  I  *  L  F  Y  L  F  F  Y  E  F  *  V  A  K  N  Y  C  F  V  Y  P  N  N  I  Y  N  M  *  H  I  K  L  E  N  V  L  *  Q  S  L  Q  N  Q  F  G  Q  H  I  N  P  I  H  *  A  S  K  W  T  G  Q  *  P  S  H  T  *  T  D  C  L  M  T  D  V  S  *  S  A  D  *  R  P  S  G  V  V  I  V  T  S  L  I  E  D  G  V  V  S  V  V  P  D  S  E  L  G  V  I  N  G  C  F  G  E  G  T  V  A  S  L  L  S  M  N  R  T  D  D  M  V  G  L  S  P  A  F  T  C  K  H  N  S  P  T  *  I  Q  R  S  A  S  S  P  G  Q  E  S  T  I  V  G  S  I  S  M  K  A  L  P  S  F  Q  S  S  Q  A  *  I  S  S  S  F  K  W  I  N  L  I  L  N  Q  R  K  I  Q  T  F  A  F  H  N  L  P  V  V  L  N  L  E  G  N  H  Y  Y  K  R  F  C  S  F  F  H  *  *  S  P  I  I  *  H  Q  S  *  R  H  Q  I  L  L  R  R  D  Q  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96007" stop="96201"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPSGVVIVTSLIEDGVVSVVPDSELGVINGCFGEGTVASLLSMNRTDDMVGLSPAFTCKHNSPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="99385" PGL_stop="98654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99385" e_stop="98654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="99385" e_stop="98654" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99385" stop="98654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCCCTCGACCTGTCAATACTTTTTCAAGAAAAGGTATTTTGGGAATGAAGATATTATTGGTTGGTTTAGTTCTCTTGCTTTCTTTAGTTAGGTGCAATAATACGCGTTCAGACAACTTGTTGCCTGGACAAATCCTTTCCTTCTCTGCAGCAAATACTTTAGTGTCCAAACAAGGGAAGTTTGAACTCGGTTTCTTCTGTCCAGGTGATTGTGAGAAGCTTTTTATTGGTATATGGTATACAAACATAAAGCCCAACACCGTGGTTTGGGTAGCAAATAGGGACAGCCCCATCTGCCCTCCCTTCAATAATTCTCACCTAGAGCTCTCTGATGGAAATCTAGGAATCTTTAATGCACTTAAACAAAGAGTCTGGGACTCTAATTTATCCACAGCAGATGTCAATAGGGCAGTACTTCTTGATTCTGGAAATTTCATTTTGACTAATGGCATTGAAATACAGTGGCAGAGCTTTGATTATCCTACAGATACATGGCTGCCTGGTGCAAGGATTGGATTTGATAAGTCCAAGAACACACTCCAGAAACTTACTTCTTGGACGAATACGAATGATACAGCTTCAGGACACTTCTCTTTGGAATTAGACCCTAATCAAAATGGTGAGTTAGTCATGCTACGTAACCTCGTGAAAATGTGGATCTGGTGGCCTTTGAATCTCGTGGAATCCAACTTCAGTTATAATCCAACAGAACATAGTGCATTTATTACT</gDNA_template>
            <first_frame> L  F  P  R  P  V  N  T  F  S  R  K  G  I  L  G  M  K  I  L  L  V  G  L  V  L  L  L  S  L  V  R  C  N  N  T  R  S  D  N  L  L  P  G  Q  I  L  S  F  S  A  A  N  T  L  V  S  K  Q  G  K  F  E  L  G  F  F  C  P  G  D  C  E  K  L  F  I  G  I  W  Y  T  N  I  K  P  N  T  V  V  W  V  A  N  R  D  S  P  I  C  P  P  F  N  N  S  H  L  E  L  S  D  G  N  L  G  I  F  N  A  L  K  Q  R  V  W  D  S  N  L  S  T  A  D  V  N  R  A  V  L  L  D  S  G  N  F  I  L  T  N  G  I  E  I  Q  W  Q  S  F  D  Y  P  T  D  T  W  L  P  G  A  R  I  G  F  D  K  S  K  N  T  L  Q  K  L  T  S  W  T  N  T  N  D  T  A  S  G  H  F  S  L  E  L  D  P  N  Q  N  G  E  L  V  M  L  R  N  L  V  K  M  W  I  W  W  P  L  N  L  V  E  S  N  F  S  Y  N  P  T  E  H  S  A  F  I  T </first_frame>
            <second_frame>  F  S  L  D  L  S  I  L  F  Q  E  K  V  F  W  E  *  R  Y  Y  W  L  V  *  F  S  C  F  L  *  L  G  A  I  I  R  V  Q  T  T  C  C  L  D  K  S  F  P  S  L  Q  Q  I  L  *  C  P  N  K  G  S  L  N  S  V  S  S  V  Q  V  I  V  R  S  F  L  L  V  Y  G  I  Q  T  *  S  P  T  P  W  F  G  *  Q  I  G  T  A  P  S  A  L  P  S  I  I  L  T  *  S  S  L  M  E  I  *  E  S  L  M  H  L  N  K  E  S  G  T  L  I  Y  P  Q  Q  M  S  I  G  Q  Y  F  L  I  L  E  I  S  F  *  L  M  A  L  K  Y  S  G  R  A  L  I  I  L  Q  I  H  G  C  L  V  Q  G  L  D  L  I  S  P  R  T  H  S  R  N  L  L  L  G  R  I  R  M  I  Q  L  Q  D  T  S  L  W  N  *  T  L  I  K  M  V  S  *  S  C  Y  V  T  S  *  K  C  G  S  G  G  L  *  I  S  W  N  P  T  S  V  I  I  Q  Q  N  I  V  H  L  L   </second_frame>
            <third_frame>   F  P  S  T  C  Q  Y  F  F  K  K  R  Y  F  G  N  E  D  I  I  G  W  F  S  S  L  A  F  F  S  *  V  Q  *  Y  A  F  R  Q  L  V  A  W  T  N  P  F  L  L  C  S  K  Y  F  S  V  Q  T  R  E  V  *  T  R  F  L  L  S  R  *  L  *  E  A  F  Y  W  Y  M  V  Y  K  H  K  A  Q  H  R  G  L  G  S  K  *  G  Q  P  H  L  P  S  L  Q  *  F  S  P  R  A  L  *  W  K  S  R  N  L  *  C  T  *  T  K  S  L  G  L  *  F  I  H  S  R  C  Q  *  G  S  T  S  *  F  W  K  F  H  F  D  *  W  H  *  N  T  V  A  E  L  *  L  S  Y  R  Y  M  A  A  W  C  K  D  W  I  *  *  V  Q  E  H  T  P  E  T  Y  F  L  D  E  Y  E  *  Y  S  F  R  T  L  L  F  G  I  R  P  *  S  K  W  *  V  S  H  A  T  *  P  R  E  N  V  D  L  V  A  F  E  S  R  G  I  Q  L  Q  L  *  S  N  R  T  *  C  I  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99385" stop="98654"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPRPVNTFSRKGILGMKILLVGLVLLLSLVRCNNTRSDNLLPGQILSFSAANTLVSKQGKFELGFFCPGDCEKLFIGIWYTNIKPNTVVWVANRDSPICPPFNNSHLELSDGNLGIFNALKQRVWDSNLSTADVNRAVLLDSGNFILTNGIEIQWQSFDYPTDTWLPGARIGFDKSKNTLQKLTSWTNTNDTASGHFSLELDPNQNGELVMLRNLVKMWIWWPLNLVESNFSYNPTEHSAFIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="106750" PGL_stop="107497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106750" e_stop="107497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="106750" e_stop="107497" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106750" stop="107497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAATCACCCTAAACAATTTTTTCCCCTCTCAAGTAAAATAAAAAATAAACCTAAGTTTGGAGCAAAGGTAGGTGTTTTACGAGACAATATTGGGTTATGGTATTCATTTGGATAAAGTTTAGAAATATTTTCGCCTCATGTCATTAAAAATATTTAATATTTTTTATGAAGTTTCAACTTAAAATAAATATTGGCTGTTGTTTTTATTCATTTGCTCTGCCCTCCCATCCTTCAAAATAAAGTTGAAATATTTCTTATAGGATTAGAACAAGTAGGGACTGGACAAACGGAACTTGAGATTTAGCTTCTTCATTCTCAGGTAGTCCTTTGTTGTATTTTTAAGAAAGGTAACAAAGTACTTGCGAACGGATTATTTATTATTGCTATAAACTTTGATTCTATGATTCACTAACCTTTAGCTCTGCTGTTTGCCATTGTTGTAATCATCAAGTTATAAACATAATTAATGCACTGTTGGTTGCACTTGTACTGTATCGACAGTCTGGTAACTTATGCACACAACCTGTTTGATTATTTGCTCATTAGACTTTTATCCCTCTATGCTTCAAATAGGTAACCTTTTAACTGTAGCCAGAAGCAGACTTAGGATGTTAAGCCCGTCCATGGTGGAGTACCACCCATCTATACCACTATTTAGTGTCGGTGGGTGACAATGCTGACTTAGTTCAATACATTTTTGTAAAAGTGGGCTAGTAGTACTGTGCTCAACAATTCAACATCAATG</gDNA_template>
            <first_frame> *  K  S  P  *  T  I  F  S  P  L  K  *  N  K  K  *  T  *  V  W  S  K  G  R  C  F  T  R  Q  Y  W  V  M  V  F  I  W  I  K  F  R  N  I  F  A  S  C  H  *  K  Y  L  I  F  F  M  K  F  Q  L  K  I  N  I  G  C  C  F  Y  S  F  A  L  P  S  H  P  S  K  *  S  *  N  I  S  Y  R  I  R  T  S  R  D  W  T  N  G  T  *  D  L  A  S  S  F  S  G  S  P  L  L  Y  F  *  E  R  *  Q  S  T  C  E  R  I  I  Y  Y  C  Y  K  L  *  F  Y  D  S  L  T  F  S  S  A  V  C  H  C  C  N  H  Q  V  I  N  I  I  N  A  L  L  V  A  L  V  L  Y  R  Q  S  G  N  L  C  T  Q  P  V  *  L  F  A  H  *  T  F  I  P  L  C  F  K  *  V  T  F  *  L  *  P  E  A  D  L  G  C  *  A  R  P  W  W  S  T  T  H  L  Y  H  Y  L  V  S  V  G  D  N  A  D  L  V  Q  Y  I  F  V  K  V  G  *  *  Y  C  A  Q  Q  F  N  I  N  </first_frame>
            <second_frame>  R  N  H  P  K  Q  F  F  P  L  S  S  K  I  K  N  K  P  K  F  G  A  K  V  G  V  L  R  D  N  I  G  L  W  Y  S  F  G  *  S  L  E  I  F  S  P  H  V  I  K  N  I  *  Y  F  L  *  S  F  N  L  K  *  I  L  A  V  V  F  I  H  L  L  C  P  P  I  L  Q  N  K  V  E  I  F  L  I  G  L  E  Q  V  G  T  G  Q  T  E  L  E  I  *  L  L  H  S  Q  V  V  L  C  C  I  F  K  K  G  N  K  V  L  A  N  G  L  F  I  I  A  I  N  F  D  S  M  I  H  *  P  L  A  L  L  F  A  I  V  V  I  I  K  L  *  T  *  L  M  H  C  W  L  H  L  Y  C  I  D  S  L  V  T  Y  A  H  N  L  F  D  Y  L  L  I  R  L  L  S  L  Y  A  S  N  R  *  P  F  N  C  S  Q  K  Q  T  *  D  V  K  P  V  H  G  G  V  P  P  I  Y  T  T  I  *  C  R  W  V  T  M  L  T  *  F  N  T  F  L  *  K  W  A  S  S  T  V  L  N  N  S  T  S  M </second_frame>
            <third_frame>   E  I  T  L  N  N  F  F  P  S  Q  V  K  *  K  I  N  L  S  L  E  Q  R  *  V  F  Y  E  T  I  L  G  Y  G  I  H  L  D  K  V  *  K  Y  F  R  L  M  S  L  K  I  F  N  I  F  Y  E  V  S  T  *  N  K  Y  W  L  L  F  L  F  I  C  S  A  L  P  S  F  K  I  K  L  K  Y  F  L  *  D  *  N  K  *  G  L  D  K  R  N  L  R  F  S  F  F  I  L  R  *  S  F  V  V  F  L  R  K  V  T  K  Y  L  R  T  D  Y  L  L  L  L  *  T  L  I  L  *  F  T  N  L  *  L  C  C  L  P  L  L  *  S  S  S  Y  K  H  N  *  C  T  V  G  C  T  C  T  V  S  T  V  W  *  L  M  H  T  T  C  L  I  I  C  S  L  D  F  Y  P  S  M  L  Q  I  G  N  L  L  T  V  A  R  S  R  L  R  M  L  S  P  S  M  V  E  Y  H  P  S  I  P  L  F  S  V  G  G  *  Q  C  *  L  S  S  I  H  F  C  K  S  G  L  V  V  L  C  S  T  I  Q  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0323A14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="111752" PGL_stop="113156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111752" e_stop="113156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="111752" e_stop="113156" e_length="1405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111752" stop="113156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGATAGATACGTATAGAAAGAGAATCTAGAGAGAGAAAACAGAAACCCATTTCCCAGAAAGAACACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGATTTTCGGTGCCCGATTTCCCTTGAAATTATGTCCGACCCGGTTATTCTGTCGTCGGGTCACACCTTCGACCGCTCTTCAATCCAACGGTGGGTAGACTCCGGCCACCGGACTTGCCCGATTACCAAGCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTCATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTCACATACCCTGAACCGCAGTCCCTTATTCAAACCCTTATTGCTTCTTCTTCTTCTAATTTGGATTCTAAGCTCCACTCGCTTGACCAACTCAGTAAGCTTTCCAAGCGTGATTTGGCGATCCGAAGGAAACTCACCGAGTCGGGCGCTGTATCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTGCAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGGTTGGTGGCAGAAGGGGTTGTGGGGAAAGTGGTCTCCTCTTTACGAAGAGGTGCTGGAGACTCGAGGGCGGTGGCGGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCAACCATTGGGGCATACCCAGATGCAATTCCAGGGTTAATTTCGCTGCTTTGGGGTGGCAGCGGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTCCCGGATAATCGGGTTCGGGCCGTGCAGAACCAGGCTGTTCCAGTACTAATTAAGAATGCTAATTTAGGCCTAGAAAGATCAGTTGAGGTATTGGGATTATTAGCAAAATGTAAAGAGGGTCGTTATGAAATGTTTAAATACTGTGGGTTGTTGGATATTTTGATAAAATTCTTGAAAAATGGGTCTTCAAGAGCTGTGCAATATGGTCTTTTGACTATCAGCTTGCTGTGTAGTTACAGTGAAAGGATGCGTGTGTTGGCTGTAAGAGAAGGGGTGTTTGAGATTTCTGTTGGGTTATTACAAGATGATAATGAGAAAGTGAGAAGAAATGCTAATAGCTTGATTCAGGTTTTACAAGGGCAAACATTAAGTCTTTGAGATATGAATTTGGAAAGTGTTGATTTTGAATGGATTATTGGAAGCTTTGGAGGGTGAAGAAGAAGAAGGTGAGTTTTTAGGCTTCCTCATAATTATTTTTGTTGAATAGTTTTTCTTTGTACAAAAAGATTAGAATTTTAGGGCAAAAAATGTGCATCTCTCTTTTTCTCTATCAAAATCTCTTTTGTTTTTTTGGTTTTATATTATCAAC</gDNA_template>
            <first_frame> I  D  R  Y  V  *  K  E  N  L  E  R  E  N  R  N  P  F  P  R  K  N  T  K  I  E  M  A  T  S  T  Q  F  P  D  D  F  R  C  P  I  S  L  E  I  M  S  D  P  V  I  L  S  S  G  H  T  F  D  R  S  S  I  Q  R  W  V  D  S  G  H  R  T  C  P  I  T  K  L  P  I  S  D  P  V  S  L  I  P  N  H  A  L  R  S  L  I  S  N  Y  T  L  V  S  F  P  K  P  L  T  Y  P  E  P  Q  S  L  I  Q  T  L  I  A  S  S  S  S  N  L  D  S  K  L  H  S  L  D  Q  L  S  K  L  S  K  R  D  L  A  I  R  R  K  L  T  E  S  G  A  V  S  A  L  L  N  C  V  N  S  D  D  D  S  G  G  L  Q  E  K  A  L  H  L  L  L  N  L  S  L  D  D  D  N  K  V  G  L  V  A  E  G  V  V  G  K  V  V  S  S  L  R  R  G  A  G  D  S  R  A  V  A  A  T  V  L  T  S  L  A  V  V  E  V  N  K  A  T  I  G  A  Y  P  D  A  I  P  G  L  I  S  L  L  W  G  G  S  G  R  E  R  K  E  A  A  T  A  L  Y  T  L  C  S  F  P  D  N  R  V  R  A  V  Q  N  Q  A  V  P  V  L  I  K  N  A  N  L  G  L  E  R  S  V  E  V  L  G  L  L  A  K  C  K  E  G  R  Y  E  M  F  K  Y  C  G  L  L  D  I  L  I  K  F  L  K  N  G  S  S  R  A  V  Q  Y  G  L  L  T  I  S  L  L  C  S  Y  S  E  R  M  R  V  L  A  V  R  E  G  V  F  E  I  S  V  G  L  L  Q  D  D  N  E  K  V  R  R  N  A  N  S  L  I  Q  V  L  Q  G  Q  T  L  S  L  *  D  M  N  L  E  S  V  D  F  E  W  I  I  G  S  F  G  G  *  R  R  R  R  *  V  F  R  L  P  H  N  Y  F  C  *  I  V  F  L  C  T  K  R  L  E  F  *  G  K  K  C  A  S  L  F  F  S  I  K  I  S  F  V  F  L  V  L  Y  Y  Q  </first_frame>
            <second_frame>  *  I  D  T  Y  R  K  R  I  *  R  E  K  T  E  T  H  F  P  E  R  T  Q  K  *  K  W  Q  L  Q  P  S  S  R  T  I  F  G  A  R  F  P  L  K  L  C  P  T  R  L  F  C  R  R  V  T  P  S  T  A  L  Q  S  N  G  G  *  T  P  A  T  G  L  A  R  L  P  S  Y  P  F  P  T  R  F  L  S  S  L  I  M  P  F  G  V  S  F  P  I  I  P  S  S  L  S  P  N  H  S  H  T  L  N  R  S  P  L  F  K  P  L  L  L  L  L  L  L  I  W  I  L  S  S  T  R  L  T  N  S  V  S  F  P  S  V  I  W  R  S  E  G  N  S  P  S  R  A  L  Y  L  L  F  S  I  A  L  T  R  M  M  T  R  V  V  C  R  R  K  R  F  I  C  C  *  I  *  A  W  M  M  I  T  K  W  G  W  W  Q  K  G  L  W  G  K  W  S  P  L  Y  E  E  V  L  E  T  R  G  R  W  R  P  R  F  *  R  V  *  R  W  W  K  *  I  R  Q  P  L  G  H  T  Q  M  Q  F  Q  G  *  F  R  C  F  G  V  A  A  V  E  R  E  R  K  L  L  L  L  S  T  R  C  A  L  S  R  I  I  G  F  G  P  C  R  T  R  L  F  Q  Y  *  L  R  M  L  I  *  A  *  K  D  Q  L  R  Y  W  D  Y  *  Q  N  V  K  R  V  V  M  K  C  L  N  T  V  G  C  W  I  F  *  *  N  S  *  K  M  G  L  Q  E  L  C  N  M  V  F  *  L  S  A  C  C  V  V  T  V  K  G  C  V  C  W  L  *  E  K  G  C  L  R  F  L  L  G  Y  Y  K  M  I  M  R  K  *  E  E  M  L  I  A  *  F  R  F  Y  K  G  K  H  *  V  F  E  I  *  I  W  K  V  L  I  L  N  G  L  L  E  A  L  E  G  E  E  E  E  G  E  F  L  G  F  L  I  I  I  F  V  E  *  F  F  F  V  Q  K  D  *  N  F  R  A  K  N  V  H  L  S  F  S  L  S  K  S  L  L  F  F  W  F  Y  I  I  N </second_frame>
            <third_frame>   R  *  I  R  I  E  R  E  S  R  E  R  K  Q  K  P  I  S  Q  K  E  H  K  N  R  N  G  N  F  N  P  V  P  G  R  F  S  V  P  D  F  P  *  N  Y  V  R  P  G  Y  S  V  V  G  S  H  L  R  P  L  F  N  P  T  V  G  R  L  R  P  P  D  L  P  D  Y  Q  A  T  H  F  R  P  G  F  S  H  P  *  S  C  P  S  E  S  H  F  Q  L  Y  P  R  L  F  P  Q  T  T  H  I  P  *  T  A  V  P  Y  S  N  P  Y  C  F  F  F  F  *  F  G  F  *  A  P  L  A  *  P  T  Q  *  A  F  Q  A  *  F  G  D  P  K  E  T  H  R  V  G  R  C  I  C  S  S  Q  L  R  *  L  G  *  *  L  G  W  F  A  G  E  S  A  S  F  V  V  E  F  E  L  G  *  *  *  Q  S  G  V  G  G  R  R  G  C  G  E  S  G  L  L  F  T  K  R  C  W  R  L  E  G  G  G  G  H  G  F  D  E  F  S  G  G  G  S  E  *  G  N  H  W  G  I  P  R  C  N  S  R  V  N  F  A  A  L  G  W  Q  R  *  R  E  K  G  S  C  Y  C  S  L  H  A  V  L  F  P  G  *  S  G  S  G  R  A  E  P  G  C  S  S  T  N  *  E  C  *  F  R  P  R  K  I  S  *  G  I  G  I  I  S  K  M  *  R  G  S  L  *  N  V  *  I  L  W  V  V  G  Y  F  D  K  I  L  E  K  W  V  F  K  S  C  A  I  W  S  F  D  Y  Q  L  A  V  *  L  Q  *  K  D  A  C  V  G  C  K  R  R  G  V  *  D  F  C  W  V  I  T  R  *  *  *  E  S  E  K  K  C  *  *  L  D  S  G  F  T  R  A  N  I  K  S  L  R  Y  E  F  G  K  C  *  F  *  M  D  Y  W  K  L  W  R  V  K  K  K  K  V  S  F  *  A  S  S  *  L  F  L  L  N  S  F  S  L  Y  K  K  I  R  I  L  G  Q  K  M  C  I  S  L  F  L  Y  Q  N  L  F  C  F  F  G  F  I  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111770" stop="112945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KENLERENRNPFPRKNTKIEMATSTQFPDDFRCPISLEIMSDPVILSSGHTFDRSSIQRWVDSGHRTCPITKLPISDPVSLIPNHALRSLISNYTLVSFPKPLTYPEPQSLIQTLIASSSSNLDSKLHSLDQLSKLSKRDLAIRRKLTESGAVSALLNCVNSDDDSGGLQEKALHLLLNLSLDDDNKVGLVAEGVVGKVVSSLRRGAGDSRAVAATVLTSLAVVEVNKATIGAYPDAIPGLISLLWGGSGRERKEAATALYTLCSFPDNRVRAVQNQAVPVLIKNANLGLERSVEVLGLLAKCKEGRYEMFKYCGLLDILIKFLKNGSSRAVQYGLLTISLLCSYSERMRVLAVREGVFEISVGLLQDDNEKVRRNANSLIQVLQGQTLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="122609" PGL_stop="125292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122609" e_stop="122695"/>
            <exon e_start="123813" e_stop="123906"/>
            <exon e_start="124353" e_stop="124613"/>
            <exon e_start="124714" e_stop="125292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.894" e_score="0.989"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.995" e_score="0.985"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="122609" e_stop="122695" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.894">
            <gDNA_intron_boundary i_start="122696" i_stop="123812" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123813" e_stop="123906" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="124353" e_stop="124613" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="124714" e_stop="125292" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122609" stop="122695"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="125292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTCTTTTCTATTCTATTCCAACAACAACTCATTCATCCACCTACTACTTTCCCTTTCAAATGGCAACCAAAGTCTACATTGT : TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG : GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGCGATGCCCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC : GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACTACAAACTCATGTCCTATTGCATTCTGCTGTCCATTTTTTTTTCCCCTATGTCTAGTATACTCTTGTTTTAAGTTGCATTTCTACTACAAAAAAACAATAAGTGATTATTATCTATTATATCAGCATATATATATAGGGTCAGTGTCTATCACAGTTTACAGAGGTTGTTTACATGTTCTATGAATCATACTTAATTTTTTTTTTCTCATTTCATAATCAATGGCTACAGCAACAATCCCTTTATCTCTCTCTCTCCCAACCCCCCAATTATGTTACTCGATGTCAATTTGATAAGAAGATTTTTGTGATCCAATCCCAATAAGTTGGCTCAAACTAC</gDNA_template>
            <first_frame> S  L  S  F  L  F  Y  S  N  N  N  S  F  I  H  L  L  L  S  L  S  N  G  N  Q  S  L  H  C  :  L  L  L  H  V  W  T  C  *  E  A  S  T  R  D  K  E  R  S  R  I  S  *  R  R  R  S  Q  T  M  A   : G  T  R  N  S  F  R  R  G  S  W  K  D  G  W  T  S  K  S  D  A  Q  L  S  H  P  M  T  L  L  K  L  M  A  L  C  L  D  S  Q  Q  D  L  G  *  W  L  L  S  S  R  H  F  L  M  P  L  V  V  S  G  E  L  S  S  L  Q  A  S  Q  R  A  F  S  T  V  L  A  L  K  E  V  A  K  R  L  L   : R  *  L  Q  L  L  S  L  F  T  M  E  *  S  L  S  R  L  V  T  H  L  V  L  A  C  S  R  W  R  R  L  K  V  E  V  L  T  V  Q  E  L  L  L  E  M  A  L  D  S  Q  Q  I  L  N  W  S  K  L  S  T  R  E  N  T  L  L  P  S  Q  R  S  S  K  A  L  L  D  C  F  T  T  N  S  C  P  I  A  F  C  C  P  F  F  F  P  L  C  L  V  Y  S  C  F  K  L  H  F  Y  Y  K  K  T  I  S  D  Y  Y  L  L  Y  Q  H  I  Y  I  G  S  V  S  I  T  V  Y  R  G  C  L  H  V  L  *  I  I  L  N  F  F  F  L  I  S  *  S  M  A  T  A  T  I  P  L  S  L  S  L  P  T  P  Q  L  C  Y  S  M  S  I  *  *  E  D  F  C  D  P  I  P  I  S  W  L  K  L  </first_frame>
            <second_frame>  L  F  L  F  Y  S  I  P  T  T  T  H  S  S  T  Y  Y  F  P  F  Q  M  A  T  K  V  Y  I  V :   Y  Y  S  M  Y  G  H  V  E  K  L  A  Q  E  I  K  K  G  A  A  S  V  E  G  V  E  A  K  L  W  Q  :  V  P  E  T  L  S  E  E  V  L  G  K  M  G  G  P  A  K  A  M  P  N  Y  H  T  Q  *  P  C  *  S  *  W  L  C  V  W  I  P  N  K  I  W  D  D  G  C  S  V  Q  G  I  S  *  C  H  W  W  S  L  E  N  S  A  A  C  R  Q  A  S  G  P  F  L  Q  Y  W  L  S  R  R  W  P  R  D  Y  C  :  V  D  C  N  Y  S  A  C  S  P  W  N  D  L  C  P  D  W  L  H  I  W  C  W  H  V  R  D  G  E  D  *  R  W  K  S  L  R  C  R  N  F  C  W  R  W  L  *  T  A  N  R  S  *  T  G  A  S  F  P  P  G  K  T  H  C  Y  H  R  K  E  A  Q  R  L  C  L  I  V  S  L  Q  T  H  V  L  L  H  S  A  V  H  F  F  F  P  Y  V  *  Y  T  L  V  L  S  C  I  S  T  T  K  K  Q  *  V  I  I  I  Y  Y  I  S  I  Y  I  *  G  Q  C  L  S  Q  F  T  E  V  V  Y  M  F  Y  E  S  Y  L  I  F  F  F  S  F  H  N  Q  W  L  Q  Q  Q  S  L  Y  L  S  L  S  Q  P  P  N  Y  V  T  R  C  Q  F  D  K  K  I  F  V  I  Q  S  Q  *  V  G  S  N  Y </second_frame>
            <third_frame>   S  F  F  S  I  L  F  Q  Q  Q  L  I  H  P  P  T  T  F  P  F  K  W  Q  P  K  S  T  L   : F  T  T  P  C  M  D  M  L  R  S  *  H  K  R  *  R  K  E  P  H  Q  L  K  A  *  K  P  N  Y  G  R :   Y  Q  K  L  F  Q  K  R  F  L  E  R  W  V  D  Q  Q  K  R  C  P  I  I  T  P  N  D  L  A  E  A  D  G  F  V  F  G  F  P  T  R  F  G  M  M  A  A  Q  F  K  A  F  L  D  A  T  G  G  L  W  R  T  Q  Q  L  A  G  K  P  A  G  L  F  Y  S  T  G  S  Q  G  G  G  Q  E  T  T  A :   L  T  A  I  T  Q  L  V  H  H  G  M  I  F  V  P  I  G  Y  T  F  G  A  G  M  F  E  M  E  K  I  K  G  G  S  P  Y  G  A  G  T  F  A  G  D  G  S  R  Q  P  T  D  L  E  L  E  Q  A  F  H  Q  G  K  H  I  A  T  I  A  K  K  L  K  G  S  A  *  L  F  H  Y  K  L  M  S  Y  C  I  L  L  S  I  F  F  S  P  M  S  S  I  L  L  F  *  V  A  F  L  L  Q  K  N  N  K  *  L  L  S  I  I  S  A  Y  I  Y  R  V  S  V  Y  H  S  L  Q  R  L  F  T  C  S  M  N  H  T  *  F  F  F  S  H  F  I  I  N  G  Y  S  N  N  P  F  I  S  L  S  P  N  P  P  I  M  L  L  D  V  N  L  I  R  R  F  L  *  S  N  P  N  K  L  A  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123890" stop="123906"/>
                    <exon start="124353" stop="124613"/>
                    <exon start="124714" stop="124945"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNYGRYQKLFQKRFLERWVDQQKRCPIITPNDLAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKIKGGSPYGAGTFAGDGSRQPTDLELEQAFHQGKHIATIAKKLKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123268" e_stop="123429"/>
            <exon e_start="123813" e_stop="123906"/>
            <exon e_start="124353" e_stop="124613"/>
            <exon e_start="124714" e_stop="124955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.894" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.995" e_score="0.985"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="123268" e_stop="123429" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.894">
            <gDNA_intron_boundary i_start="123430" i_stop="123812" i_length="383"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123813" e_stop="123906" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123907" i_stop="124352" i_length="446"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="124353" e_stop="124613" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124614" i_stop="124713" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="124714" e_stop="124955" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123268" stop="123429"/>
              <exon start="123813" stop="123906"/>
              <exon start="124353" stop="124613"/>
              <exon start="124714" stop="124955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCTTTATGAGATGACATTCTTGAAATTGAATAATATTAACTTGAAGTTCCAAGATGGAGTTGTCGATATTACCATTGGTGCTAAATGATTTTGTTGATTAGAATCAACTATCATATAAATTTATGGCCTGAACTCCATAGTCTTTTCAAGATTCCTATTG : TTACTACTCCATGTATGGACATGTTGAGAAGCTAGCACAAGAGATAAAGAAAGGAGCCGCATCAGTTGAAGGCGTAGAAGCCAAACTATGGCAG : GTACCAGAAACTCTTTCAGAAGAGGTTCTTGGAAAGATGGGTGGACCAGCAAAAGCGATGCCCAATTATCACACCCAATGACCTTGCTGAAGCTGATGGCTTTGTGTTTGGATTCCCAACAAGATTTGGGATGATGGCTGCTCAGTTCAAGGCATTTCTTGATGCCACTGGTGGTCTCTGGAGAACTCAGCAGCTTGCAGGCAAGCCAGCGGGCCTTTTCTACAGTACTGGCTCTCAAGGAGGTGGCCAAGAGACTACTGC : GTTGACTGCAATTACTCAGCTTGTTCACCATGGAATGATCTTTGTCCCGATTGGTTACACATTTGGTGCTGGCATGTTCGAGATGGAGAAGATTAAAGGTGGAAGTCCTTACGGTGCAGGAACTTTTGCTGGAGATGGCTCTAGACAGCCAACAGATCTTGAACTGGAGCAAGCTTTCCACCAGGGAAAACACATTGCTACCATCGCAAAGAAGCTCAAAGGCTCTGCTTGATTGTTTCACT</gDNA_template>
            <first_frame> S  L  Y  E  M  T  F  L  K  L  N  N  I  N  L  K  F  Q  D  G  V  V  D  I  T  I  G  A  K  *  F  C  *  L  E  S  T  I  I  *  I  Y  G  L  N  S  I  V  F  S  R  F  L  L  :  L  L  L  H  V  W  T  C  *  E  A  S  T  R  D  K  E  R  S  R  I  S  *  R  R  R  S  Q  T  M  A   : G  T  R  N  S  F  R  R  G  S  W  K  D  G  W  T  S  K  S  D  A  Q  L  S  H  P  M  T  L  L  K  L  M  A  L  C  L  D  S  Q  Q  D  L  G  *  W  L  L  S  S  R  H  F  L  M  P  L  V  V  S  G  E  L  S  S  L  Q  A  S  Q  R  A  F  S  T  V  L  A  L  K  E  V  A  K  R  L  L   : R  *  L  Q  L  L  S  L  F  T  M  E  *  S  L  S  R  L  V  T  H  L  V  L  A  C  S  R  W  R  R  L  K  V  E  V  L  T  V  Q  E  L  L  L  E  M  A  L  D  S  Q  Q  I  L  N  W  S  K  L  S  T  R  E  N  T  L  L  P  S  Q  R  S  S  K  A  L  L  D  C  F  T </first_frame>
            <second_frame>  V  F  M  R  *  H  S  *  N  *  I  I  L  T  *  S  S  K  M  E  L  S  I  L  P  L  V  L  N  D  F  V  D  *  N  Q  L  S  Y  K  F  M  A  *  T  P  *  S  F  Q  D  S  Y  C :   Y  Y  S  M  Y  G  H  V  E  K  L  A  Q  E  I  K  K  G  A  A  S  V  E  G  V  E  A  K  L  W  Q  :  V  P  E  T  L  S  E  E  V  L  G  K  M  G  G  P  A  K  A  M  P  N  Y  H  T  Q  *  P  C  *  S  *  W  L  C  V  W  I  P  N  K  I  W  D  D  G  C  S  V  Q  G  I  S  *  C  H  W  W  S  L  E  N  S  A  A  C  R  Q  A  S  G  P  F  L  Q  Y  W  L  S  R  R  W  P  R  D  Y  C  :  V  D  C  N  Y  S  A  C  S  P  W  N  D  L  C  P  D  W  L  H  I  W  C  W  H  V  R  D  G  E  D  *  R  W  K  S  L  R  C  R  N  F  C  W  R  W  L  *  T  A  N  R  S  *  T  G  A  S  F  P  P  G  K  T  H  C  Y  H  R  K  E  A  Q  R  L  C  L  I  V  S   </second_frame>
            <third_frame>   S  L  *  D  D  I  L  E  I  E  *  Y  *  L  E  V  P  R  W  S  C  R  Y  Y  H  W  C  *  M  I  L  L  I  R  I  N  Y  H  I  N  L  W  P  E  L  H  S  L  F  K  I  P  I   : V  T  T  P  C  M  D  M  L  R  S  *  H  K  R  *  R  K  E  P  H  Q  L  K  A  *  K  P  N  Y  G  R :   Y  Q  K  L  F  Q  K  R  F  L  E  R  W  V  D  Q  Q  K  R  C  P  I  I  T  P  N  D  L  A  E  A  D  G  F  V  F  G  F  P  T  R  F  G  M  M  A  A  Q  F  K  A  F  L  D  A  T  G  G  L  W  R  T  Q  Q  L  A  G  K  P  A  G  L  F  Y  S  T  G  S  Q  G  G  G  Q  E  T  T  A :   L  T  A  I  T  Q  L  V  H  H  G  M  I  F  V  P  I  G  Y  T  F  G  A  G  M  F  E  M  E  K  I  K  G  G  S  P  Y  G  A  G  T  F  A  G  D  G  S  R  Q  P  T  D  L  E  L  E  Q  A  F  H  Q  G  K  H  I  A  T  I  A  K  K  L  K  G  S  A  *  L  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0323A14.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123890" stop="123906"/>
                    <exon start="124353" stop="124613"/>
                    <exon start="124714" stop="124945"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNYGRYQKLFQKRFLERWVDQQKRCPIITPNDLAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKIKGGSPYGAGTFAGDGSRQPTDLELEQAFHQGKHIATIAKKLKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 36864 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2048 bytes was the average size of a spliced alignment
$ 23928 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1495 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:29:19
-->
