<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:18:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g50380" ref_strand="+" ref_description="C2_At3g50380">
      <seq>ctcgatgaagagacattaatgagaattgttcctttctggagaacgtccctcagagatacaaatactccaagtcaaaagtattacattgatcattttgagatacatcctgttaaggttgtggcaagctttcttccaggggaatcttatgctaaccatagctccacgcaagagacactaagatctttacttcacagtgttataaagatacctcctgtcaaaaatatgaccgtagagctcaatggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcctggcctcacaattggtactttcaaactcattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatactttggcgatctagggaaaacttttaagtcagcaggatcaaatatcctgtttgctgctgtcactgaaatatcagactcggttctgaaaggagcagaagctagtggtttaaatggaatggtgaatggtttccatcaaggaatacttaaattggcaatggaacctacattactggggagtgctttcatggaaggtggccctgatcgaaaaattgggcttgatcgaagtcctgaggttgatgagctatacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="-" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="8859" stop="5795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8559" g_stop="8446" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8445" i_stop="8345" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8344" g_stop="8255" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="204" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8254" i_stop="7823" i_length="432">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7822" g_stop="7716" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="311" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7635" g_stop="7487" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="460" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7486" i_stop="6636" i_length="851">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6635" g_stop="6553" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="543" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6468" g_stop="6373" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="639" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6372" i_stop="6226" i_length="147">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6225" g_stop="6103" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="762" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="-" ref_id="C2_At3g50380" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g50380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8559" e_stop="8446"/>
          <exon e_start="8344" e_stop="8255"/>
          <exon e_start="7822" e_stop="7716"/>
          <exon e_start="7635" e_stop="7487"/>
          <exon e_start="6635" e_stop="6553"/>
          <exon e_start="6468" e_stop="6373"/>
          <exon e_start="6225" e_stop="6103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAGGTGTCTACAGAACTTTGGTTTCACTATGCGCCCCTTCCCAAGGAAGTTATTTTATCACCAAGAATTAACTCGCGTTTTCTATCCTAATAATGTTCCTAAAGGTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAGGTCTGATACATAGTACTTCCTCTGTCCCTTTTACGTGACACCATTTGAGTGGAATGGAGTTTAATATGTTAAGATGGCTTCTATATCACATTAAGAGAGTAGTTGAAAAGTTAGTTTCAGAGAGAACACAATATTATAGTTCAAAATTTGAACTCTTGAAACTTGTGATAGTTGAAAACAAAAATGAAGCTAATTTACTGTTCTTGTCATTATATCTATAATTGCTTCCAATAATTATGAATATATAGTGAATTTCTTGCGGAAGCCACTACTAGGATGATGTCAACTTGTCCCAGGATGGAAGGATATAATGTCAATTGATGAGGGAATATTAAAATTCATTACAGTTGTTCATACTTACTATTTGAGCAAAGGTCTTTTCTTGATTATACCTGTGGTGTAACATTCTGTTTCCGATATCTGCATTTTTAGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTGGTATGCCCATGAAAACTCCGAAATCCTTGGCTTACTGCTTGATGCATCCATGTTTAGACTTAAGATGAGTACTGCTCATTTACGTGACCTGTGCTTCCATGGACAAGCATTTATGTGGCTAATCTCCTTTGATGCAGTGATGCTTTTACGGGGTCTTTTGTTCCAGCCCCTACTGAATTTGCCTTTGCATCAGAATACCAGGAAACGAATACTTCATGTGAAATTTAAGAAAAACTGTGTGTTTAATGGGAGACTATTTGAATATTACTGTCTTCTTATTTTGGGTTAACTTGCCTTTGCAAGGTGTGCTTCTTAGTGGAAATGATCTTGTGTTGGGGGCTGTTTTGGTACGCCATAAATCTTGTCAAAACTGAAACCTTTTTAGCAACATTATCATACTGAAGTGGCGTATTAGGCATAGGCAAGTGAAAACAGCTTGTATGTCAAGGCAAAATTGTGCATTGCTAACTCTGCCCATTTTCTTGAGCGCCTATGACGCAGAAAGTTCTTCGAATTAATGTTTAATGAGATAATTTGTAACTTAATCCAATCCAACCTGATAACTAGATAAATCTAAATCAAGGAGAGTTTTCAAACCATAAAACAGCTCGAACATTTGAATTCCAGTGCAAATAGATTATAGGATGTCAGACTTCTATGCAGTACTTTATACCCAACTCTCATGAGAGTAATGATATCAGCTGCTTTTCCGGTTCAATTTGCTTTATGATGAAGAATTAGTATGACAATCTTTGCTGCAGGTCTCTTGGAATTCACTGGCAAGTATGACTTTTCCCCTTTTATTTATGTATGTTTCCTTATCAAAGTCTCTGCTTACCTTTTGGATGAAGGTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATGGTAAGAACATCTTATCTGATAGCATTACAAATACTGTAACTACTAAGTGCCAACTTGAAGTGTTCAACCTTGATCTAGTGCTAGTTAGGTACTATTTCAGATTGTAATTTGGCTGTCACCCGAATCGATTTGATATGTTCTTTCCAGGTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG</genome_strand>
        <mrna_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG.....................................................................................................GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG...................................................................................................................................................GTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGAGGTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g37130" ref_strand="+" ref_description="C2_At4g37130">
      <seq>atggattttttgttcatgttgctgcaaaggtagagagtattcatcagtacattgaatcaatgaaaacagcatacctggctgatcagcgccgtcgaggggatgggagcgatccttttcttgaggctgatcggcgggaaacagctaaacaagaggcagctgcgaaaagggtacatccaacattgcatttgcccacaatttcacaaccatcaactcaagtagcaggattaatttccagctcagcagcacctggggtatccggtacaccacaaacgtcatctgcagtttcttctgcctcagcaggaagtggatcctcactatttgctaccccatccgttgctgcttcatcttcttccctgttcactactccaacaatgtcagctccagtctcctctttgttcggaacatctggtgcttccccccaaagttcactctttgggtccttgtccacttcaactccagcctttagtactccattatttggttctaccccagcttctggagtttcatcttttgcaacaccttttgcttcagggcctgcactagcatcaggggcaagctttgggactcaatctaagactagagcaaaaagtcgtacaagcagacgctagagaatgtgtttggtaattcatacatctgagattctaatggatggaaatctctatgctactggttatctgtcacagtagcttggcaaagctcaagcattttgacaaatcatgaaaattttatctacctccagtttcattattgtggaccagtatctctgcagagatgttcgttcacaaggatgtcgcggcaatgttatgtcatactatttttcacttaattctgctgatctagtgtatcaagcttgattttgtactcgagtctcttctagatgatttcagttgcccattgtagaaatagaactggttatatttgtgatgctttggatacttgtgtaaacacttgattgagatctcatctgttgtagacgcgttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0226F10-7UJE5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0226F10.1" temp_strand="+" temp_description="C02HBa0226F10.1  AC215428.1 htgs_phase:3 submitted_to_sgn_as:gi|161789415|gb|AC215428.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence">
        <position start="111113" stop="117291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111413" g_stop="111441" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111442" i_stop="112298" i_length="857">
            <donor d_prob="0.798" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112299" g_stop="112800" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="531" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112801" i_stop="115857" i_length="3057">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115858" g_stop="115898" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="572" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115899" i_stop="116578" i_length="680">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116579" g_stop="116991" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="985" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0226F10.1" gen_strand="+" ref_id="C2_At4g37130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>985</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0226F10.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g37130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111413" e_stop="111441"/>
          <exon e_start="112299" e_stop="112800"/>
          <exon e_start="115858" e_stop="115898"/>
          <exon e_start="116579" e_stop="116991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTTTTTGTTCATGTTGCTGCAAAGGTAATGGGGATTTTAAACTTTTGTAATGATGAGGGTTTTTAAAGATTTGACGGAAGTATCATGCTTAGTCAGAAGGGAGTAAAGGAGTAAAAATGACTAGGAGTACTTTGCCTTCTTGTTACGTTTATTATGACCAGACAAATATGCATTATATATATTCTAGGGGTCGTTTGGTAGAGTGTATAAAAATAATACCCGATAGAGTGTATTTGTAATGCATGTATTAGTTATACTTGTATCCGTTATGCATAGATTATTAGGCTTCAGTTCATGGAGTGTATACATTCCATGAAAAAATGCGCCAAACAAGGGATTACTGATACATGTAATTAATGCATGCATTATATTTGCTAATTTACTCTACCAAACAATGCCTTAAAGAGATGGCACTGGCTTTGTTTTCATGTTGCCACAGAGGTAATGGGAAGTGGAACTTTTTTGTAATGGTGAGGGCTTCTCAAGATTTGGTGAGAGTATCATGATGCTTAGTCAGAAGGGAGTAAAAGAGTAAAAATGACTAGGAGTACTTTGGCTTCTTTGTAACGTTTATTTTGACCTAACAAATATACATTATATATATTCTTGTAGCTTCCGATGCAGTTGATGTTCCTCATCAATTAGTTTTGTGCCACTTATATCTAGTATCAGAGAGTATCAGCATATTAGTTGATTTCTGATATACTTTTGAGGCAGCAAAAATTATAATGCTGCATGCATTCACAATTTGCTCTAGAATTCTAGTAGAGTTGCATGTGAAAAGTTTGTGTATCTTATTTTCATAATTTCTAGCTTACACCTTTATTTTTGGTTGCTGTGATTTTAAAAGGGAAAATATTTTTGTACTTTCGGTAAATCAGGTAGAGAGTATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGGAGCGATCCTTTTCTTGAGGCTGATCGGCGGGAAACAGCTAAACAAGAGGCAGCTGCGAAAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTAGCAGGATTAATTTCCAGCTCAGCAGCACCTGGGGTATCCGGTACACCACAAACGTCATCTGCAGTTTCTTCTGCCTCAGCAGGAAGTGGATCCTCACTATTTGCTACCCCATCCGTTGCTGCTTCATCTTCTTCCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAGGTATGTTTCCGCCAACCTGAATAATGACATATTTTTGCCCTCTGCTAGATTAGCTTTTGCAAAAGTTAAATTTATCTATAATCACTTTATCAGAAAAACTGAATATCTTTTGATTATTACCCCTACATAGTTTTGTATTATAGACTTCATAATGTAATTTGATGTAACATGCATCTATAACTTGATCTTTAGTTTATTGAATCAATCATATACTCCCTTGGTTTTAATTTATGTGATGCTATTTTCTTTTGGAACATTTCCAATTGCATTACACCGCTCCATTAATAAGGTAATTTTATACATCTTTCACAATTTTTAAGAATTCAAATCCATCTATTATTGGAATATTTAACTTTGATGCAATGTTTGCTTTATAAACTGGCTGTTGAACTATTACTTTATAATGTTCTTCAACTACGACTCACATAATACACAAGTAAGATTCAGCAACAATATACTTTCTGTTCCCACAAGTGGGTCTGGGAGAGTAGGGTGGGGTGTACATAGACTTTACCCCTACTTTGTTGGGTAGAGTGGTTGTTTCTGATGGACCCCCACGATTCAAGAAAACTCATGTTTCAGAACAGGTTTGAAAAATAATTGCACGAATAAAAAGTTATGATGAAAATACTGAAGGAAGAGAAAGTTATGATGAAAATACTGAAGAAAGAGAAGTACTGACACGGAGAGTAGCGGTGGACAATATGGAAATAGCGGAACCTTAGAGATTTTGAGAACAAGGACAGACGGAGAGTAGTATACAACAAGTCAAACTGAATTGTATTTTGACTCTCTGTTTTTGATGTAATTAGATTTGCCCTAATAATGATGTCTCGGTCATTGATGTCTTAAGACTCATTATAGGGATAGGACAATACTTTTAGAGTTCCTTGTGTAAATATGGTTTTCAGTTCAACCTATGCACTGATTTACAGGAATAGAAACAATTATCAATTTAAAAAAGAGAAGAAAAGAAAAGTACGGTCAGTAAAAAATAGTACAGAGAACCAAAGTAACGGAAGATTTTTTTTTTTTGAAAATGCGAATTGTTTCTATTTTTATAGAACAGTACATAGGTTGTGCTGAAACCCGTATTTACACAAGGATTTCTAATAATACCGACCTATCCCTATAATGAGTTTTAAAACATCAATGATAGAGACAATATCATTAGAGTAAATTTGATTACACCAAATCAAAATGCAATTTAGTTTAACTTGTTGCATACTACTCTCCCTATTCTCAAAAACTCTAAGATTGCTCTCTTTCCATATTGTCCCACCAAATAGTGGCAGGGATAATTCTCCAGTTACCTCTGTTTTTTGCTTGTGTCCTTGCTTCTTCCCAGCCATATAGAGCCTGTGAAATTCTCCCAGGCATGAACCAGGAGATATTTTTAAGTCTCAGGAACAGATGCCACAATTGACCAGTGACTTTGCATTGGATAAACAAATGATTGACGGTTTCTGCAGTTTTCCCACAGGAAAAACATCTAGAGCAAAGTGTAATTCCCCTCTTTATTAAGTTCTCCTGTGTCAATACTGCTTCTTTAGCCAATAACCACACAAAGCAAGACACCTTGTAGGGGATCTTGGCTTTCCATATATGTCTCCAGGGCCACTTGAATAACTGCAGATTTTGATGGTTCAACTTCTTGTACAATGCACCTACTGTAAAAATCCCTTTACTGTTTCCAACCACTGCAATCTATCTCGACCTATTTCCAGACCACTAAATTGATCAGTGCTTCTAAAAGATTCTGTTACTCTTGGAATTCCTAGTCATTGCGGTTTCTTCTGAATACGAAATTCCACCCTTGAGGAGTCCATAAGTCAGCTATAGTACTTAGTTGCTGAAGAACTAAATTGTGGATGTCAGGGAAGAGAGTCTCCATATTTCCTTCTGCATGCCAATTATCCTTCCAAAACCCAGTTTTTATGCCATCTACCACTTCGATTTTGGTGTTAGGTTTGAATTCATTTCAAAGTTCTCTAATGGATTTCCATAAGCTAACACCATAAGGGGTGGTACCTCCTTTGTCATCCAACTATCACTCTCTTCATATTTTGCCTTTATGACTAAGCTCCACAGATTCTGATTATCATTCGAGTACTTCCAAAGCCACTTCATCCTCAAAGTAAAGGAAGCATTAGTATTAACAGAATTGAAGAATAAGCTAATACTAGCATTATACTAACTATACTGTTAATAGAGAAGATGATTGCTCTAGATTAGGACCCTGCTCTACCTAAAGAGAGAAAAATTCTCGATGACTTACTAACCATCTACCCTAATTCTTGATCTCCATGCTTTCTATCTAAGTCATGTCCTCGGTGAGTGTGAGGTGTGTCATATCCTGTGTGATCACCTCTCCAATTCTTCCCCAGTCTAGCTCTACCACTTCTCAAACTTATCGCTGTCAACCTCTCACACCTTCTCCTGGCTTAAGTGTACAGTCATGTTATTATTTCAGATATCTTTTGCCTTTAACCAATTAGTTAATGCCCTTTGATGATTCACCTTTGTTGAGGTGGCCTACCGTATAAAAGAGTCCAGGAATTTCTTGGTCTGCTATGTTTTTTTATCATTTTTTTGTGGCTATTATTTCCAAAAGTTGTTGGTGGGGAAAAGTTGCTTTGTAATTTAGTTTTCTCTGAGGAAGTTACTTTGAGTAGTTGAATTTTTCCTTTTAGGAAAATTTCCTCTAAATGCTTGTGCTTTTGGTGATCTATTTTATCACATGCTATATTTTCAAAAATAAAAATTATTTTGTGATCCAATTTTTTTTCTACCCTTTATTTTGCCAATAACCTCCTTTCTTTTATATTAACCTACAGTTCGTTACTTAGTTCATTTGATATTAGAACTTTCAGATATCTTTAGCATATTCTTGATTCTGTCGTATTTTCGAATGAAAGGGATTTTTCTTTTTCATCCTGTTTTTCTTCTATTCCCAGAACCTGTATCCTTCAAATTTTGTTTGCTAATTTTTGAATCTGGTAACAGTAAAATTTGTTTGCTGAATTGTGCCTAACTGTTGTTCTTATGTTATTGAAGGGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCTGTGAGTATACATGTTCTCCTATATTGTCTCTTTCTTGTTTATGCCTTGACTGAAAGGAAAACACTTCTCGCCTATCCTTAAGCATGGCATGAGGAAAATGGAAATCTAAGTGGAGTAGAGGAATAGTTTATTTGGCGATGTTGGTTAACTTATCTGTTGACAAATTACTTTGTTGAATGTTAGGATGCTTTTACAAAAATCTTGCTGCTTTGAGTTTTCTATGTGATTCTTTTTTTTTCCTCAGAATCACCATGGTTCACCAACTACCGGGTTGATTTCTTATTAAAGAGAGAGAAACATACACAACAAATTGTTTGCCTTTCTATAAACAATTTTTTTATTTGACAAGGCCATCACAACTAAGAGTAGTGATGCAGTCATAATGGGCATAGACATATCTGGTACTGCCTCATGGTTGCTGAAATTGTTTTTATGAACTTTTGGTTCAAATTCTTTCATCATTTGTCTGGTATATGTTGCAGCAACACTTTGGCATTGATAGCTGTATCTTTCACAATATTTTATGAAAAGAAAGATACATGTTTTTGTTTACCAATTTGTACCCTACTTCATTATGGTATTATTTAAAAACCCTTATCAAAGAAGGTACTTGTGCTTTTGTTCTAAAAAAGCTCCTAATTCTGATGCCTATCTTTATTGTGTATCATTACTTTTGGCAGAAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATGAAAATTTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCATTGTAGAAATAGAACTGGTTATATTTGTGATGCTTTGGATACTTGTGTAAACACTTGATTGAGATCTCATCTGTTGTAGACGCGTTCCCCC</genome_strand>
        <mrna_strand>ATGGATTTTTTGTTCATGTTGCTGCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAGTATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGGAGCGATCCTTTTCTTGAGGCTGATCGGCGGGAAACAGCTAAACAAGAGGCAGCTGCGAAAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTAGCAGGATTAATTTCCAGCTCAGCAGCACCTGGGGTATCCGGTACACCACAAACGTCATCTGCAGTTTCTTCTGCCTCAGCAGGAAGTGGATCCTCACTATTTGCTACCCCATCCGTTGCTGCTTCATCTTCTTCCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATGAAAATTTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCATTGTAGAAATAGAACTGGTTATATTTGTGATGCTTTGGATACTTGTGTAAACACTTGATTGAGATCTCATCTGTTGTAGACGCGTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8559" PGL_stop="6103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8559" e_stop="8446"/>
            <exon e_start="8344" e_stop="8255"/>
            <exon e_start="7822" e_stop="7716"/>
            <exon e_start="7635" e_stop="7487"/>
            <exon e_start="6635" e_stop="6553"/>
            <exon e_start="6468" e_stop="6373"/>
            <exon e_start="6225" e_stop="6103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8559" e_stop="8446" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.652">
            <gDNA_intron_boundary i_start="8445" i_stop="8345" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8344" e_stop="8255" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.868" acc_prob="0.978">
            <gDNA_intron_boundary i_start="8254" i_stop="7823" i_length="432"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7822" e_stop="7716" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="0.883">
            <gDNA_intron_boundary i_start="7715" i_stop="7636" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7635" e_stop="7487" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.848">
            <gDNA_intron_boundary i_start="7486" i_stop="6636" i_length="851"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6635" e_stop="6553" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.752">
            <gDNA_intron_boundary i_start="6552" i_stop="6469" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6468" e_stop="6373" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6372" i_stop="6226" i_length="147"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="6225" e_stop="6103" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8559" stop="8446"/>
              <exon start="8344" stop="8255"/>
              <exon start="7822" stop="7716"/>
              <exon start="7635" stop="7487"/>
              <exon start="6635" stop="6553"/>
              <exon start="6468" stop="6373"/>
              <exon start="6225" stop="6103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g50380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG : GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG : ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG : GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG : GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT : TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG : GTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG</gDNA_template>
            <first_frame> L  D  E  E  T  L  M  R  I  V  P  F  W  R  T  S  L  R  D  T  N  T  P  S  Q  K  Y  Y  I  D  H  F  E  I  H  P  V  K  :  V  V  A  S  F  L  P  G  E  S  Y  A  N  H  S  S  T  Q  E  T  L  R  S  L  L  H  S  V  I  K  :  I  P  P  V  K  N  M  T  V  E  L  N  G  I  L  V  T  H  A  L  V  T  L  R  E  L  S  I  K  C  A  Q  H  Y  S  W :   Y  A  M  R  A  V  Y  I  A  K  G  S  P  L  L  P  P  A  F  A  S  I  F  D  D  L  A  S  S  S  L  D  V  F  F  D  P  S  T  G  H  L  N  L  P  G  L  T  I   : G  T  F  K  L  I  R  K  C  I  D  G  K  E  F  S  G  T  K  R  Y  F  G  D  L  G  K  T  :  F  K  S  A  G  S  N  I  L  F  A  A  V  T  E  I  S  D  S  V  L  K  G  A  E  A  S  G  L  N  G  M  :  V  N  G  F  H  Q  G  I  L  K  L  A  M  E  P  T  L  L  G  S  A  F  M  E  G  G  P  D  R  K  I  G  L  D  R  S  P  G  V  D  E </first_frame>
            <second_frame>  S  M  K  R  H  *  *  E  L  F  L  S  G  E  R  P  S  E  I  Q  I  L  Q  V  K  S  I  T  L  I  I  L  R  Y  I  L  L  R :   L  W  Q  A  F  F  Q  G  N  L  M  L  T  I  A  P  R  K  R  H  *  D  L  Y  F  T  V  L  *  R :   Y  L  L  S  K  I  *  P  *  S  S  M  A  S  L  *  L  M  H  W  S  L  C  G  S  C  Q  L  N  V  P  N  I  I  L   : G  M  Q  *  E  Q  Y  T  L  Q  R  E  V  P  C  C  H  Q  L  L  L  L  Y  L  T  T  *  L  H  H  L  W  M  F  S  L  I  L  L  L  A  I  L  I  F  L  A  S  Q  L  :  V  L  S  N  S  F  V  S  V  L  M  V  K  S  F  L  E  Q  K  D  T  L  A  I  *  G  K  L :   L  S  Q  Q  D  Q  I  S  C  L  L  L  S  L  K  Y  Q  T  R  F  *  K  E  Q  K  L  V  V  *  M  E  W :   *  M  V  S  I  K  E  Y  L  N  W  Q  W  N  L  H  Y  W  G  V  L  S  W  K  V  A  L  I  E  K  L  G  L  I  E  V  L  G  L  M   </second_frame>
            <third_frame>   R  *  R  D  I  N  E  N  C  S  F  L  E  N  V  P  Q  R  Y  K  Y  S  K  S  K  V  L  H  *  S  F  *  D  T  S  C  *   : G  C  G  K  L  S  S  R  G  I  L  C  *  P  *  L  H  A  R  D  T  K  I  F  T  S  Q  C  Y  K   : D  T  S  C  Q  K  Y  D  R  R  A  Q  W  H  P  C  N  S  C  I  G  H  F  A  G  V  V  N  *  M  C  P  T  L  F  L  :  V  C  N  E  S  S  I  H  C  K  G  K  S  L  A  A  T  S  F  C  F  Y  I  *  R  L  S  F  I  I  S  G  C  F  L  *  S  F  Y  W  P  S  *  S  S  W  P  H  N  W :   Y  F  Q  T  H  S  *  V  Y  *  W  *  R  V  F  W  N  K  K  I  L  W  R  S  R  E  N   : F  *  V  S  R  I  K  Y  P  V  C  C  C  H  *  N  I  R  L  G  S  E  R  S  R  S  *  W  F  K  W  N   : G  E  W  F  P  S  R  N  T  *  I  G  N  G  T  Y  I  T  G  E  C  F  H  G  R  W  P  *  S  K  N  W  A  *  S  K  S  W  G  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8559" stop="8446"/>
                    <exon start="8344" stop="8255"/>
                    <exon start="7822" stop="7716"/>
                    <exon start="7635" stop="7487"/>
                    <exon start="6635" stop="6553"/>
                    <exon start="6468" stop="6373"/>
                    <exon start="6225" stop="6103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDEETLMRIVPFWRTSLRDTNTPSQKYYIDHFEIHPVKVVASFLPGESYANHSSTQETLRSLLHSVIKIPPVKNMTVELNGILVTHALVTLRELSIKCAQHYSWYAMRAVYIAKGSPLLPPAFASIFDDLASSSLDVFFDPSTGHLNLPGLTIGTFKLIRKCIDGKEFSGTKRYFGDLGKTFKSAGSNILFAAVTEISDSVLKGAEASGLNGMVNGFHQGILKLAMEPTLLGSAFMEGGPDRKIGLDRSPGVDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="111413" PGL_stop="116991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111413" e_stop="111441"/>
            <exon e_start="112299" e_stop="112800"/>
            <exon e_start="115858" e_stop="115898"/>
            <exon e_start="116579" e_stop="116991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.798" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111413" e_stop="111441" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.798" acc_prob="0.981">
            <gDNA_intron_boundary i_start="111442" i_stop="112298" i_length="857"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112299" e_stop="112800" e_length="502"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112801" i_stop="115857" i_length="3057"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115858" e_stop="115898" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="115899" i_stop="116578" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116579" e_stop="116991" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111413" stop="111441"/>
              <exon start="112299" stop="112800"/>
              <exon start="115858" stop="115898"/>
              <exon start="116579" stop="116991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g37130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGATTTTTTGTTCATGTTGCTGCAAAG : GTAGAGAGTATTCATCAGTACATTGAATCAATGAAAACAGCATACCTGGCTGATCAGCGCCGTCGAGGGGATGGGAGCGATCCTTTTCTTGAGGCTGATCGGCGGGAAACAGCTAAACAAGAGGCAGCTGCGAAAAGGGTACATCCAACATTGCATTTGCCCACAATTTCACAACCATCAACTCAAGTAGCAGGATTAATTTCCAGCTCAGCAGCACCTGGGGTATCCGGTACACCACAAACGTCATCTGCAGTTTCTTCTGCCTCAGCAGGAAGTGGATCCTCACTATTTGCTACCCCATCCGTTGCTGCTTCATCTTCTTCCCTGTTCACTACTCCAACAATGTCAGCTCCAGTCTCCTCTTTGTTCGGAACATCTGGTGCTTCCCCCCAAAGTTCACTCTTTGGGTCCTTGTCCACTTCAACTCCAGCCTTTAGTACTCCATTATTTGGTTCTACCCCAGCTTCTGGAGTTTCATCTTTTGCAACACCTTTTGCTTCAG : GGCCTGCACTAGCATCAGGGGCAAGCTTTGGGACTCAATCT : AAGACTAGAGCAAAAAGTCGTACAAGCAGACGCTAGAGAATGTGTTTGGTAATTCATACATCTGAGATTCTAATGGATGGAAATCTCTATGCTACTGGTTATCTGTCACAGTAGCTTGGCAAAGCTCAAGCATTTTGACAAATCATGAAAATTTTATCTACCTCCAGTTTCATTATTGTGGACCAGTATCTCTGCAGAGATGTTCGTTCACAAGGATGTCGCGGCAATGTTATGTCATACTATTTTTCACTTAATTCTGCTGATCTAGTGTATCAAGCTTGATTTTGTACTCGAGTCTCTTCTAGATGATTTCAGTTGCCCATTGTAGAAATAGAACTGGTTATATTTGTGATGCTTTGGATACTTGTGTAAACACTTGATTGAGATCTCATCTGTTGTAGACGCGTTCCCCC</gDNA_template>
            <first_frame> M  D  F  L  F  M  L  L  Q  R :   *  R  V  F  I  S  T  L  N  Q  *  K  Q  H  T  W  L  I  S  A  V  E  G  M  G  A  I  L  F  L  R  L  I  G  G  K  Q  L  N  K  R  Q  L  R  K  G  Y  I  Q  H  C  I  C  P  Q  F  H  N  H  Q  L  K  *  Q  D  *  F  P  A  Q  Q  H  L  G  Y  P  V  H  H  K  R  H  L  Q  F  L  L  P  Q  Q  E  V  D  P  H  Y  L  L  P  H  P  L  L  L  H  L  L  P  C  S  L  L  Q  Q  C  Q  L  Q  S  P  L  C  S  E  H  L  V  L  P  P  K  V  H  S  L  G  P  C  P  L  Q  L  Q  P  L  V  L  H  Y  L  V  L  P  Q  L  L  E  F  H  L  L  Q  H  L  L  L  Q  :  G  L  H  *  H  Q  G  Q  A  L  G  L  N  L :   R  L  E  Q  K  V  V  Q  A  D  A  R  E  C  V  W  *  F  I  H  L  R  F  *  W  M  E  I  S  M  L  L  V  I  C  H  S  S  L  A  K  L  K  H  F  D  K  S  *  K  F  Y  L  P  P  V  S  L  L  W  T  S  I  S  A  E  M  F  V  H  K  D  V  A  A  M  L  C  H  T  I  F  H  L  I  L  L  I  *  C  I  K  L  D  F  V  L  E  S  L  L  D  D  F  S  C  P  L  *  K  *  N  W  L  Y  L  *  C  F  G  Y  L  C  K  H  L  I  E  I  S  S  V  V  D  A  F  P  </first_frame>
            <second_frame>  W  I  F  C  S  C  C  C  K   : G  R  E  Y  S  S  V  H  *  I  N  E  N  S  I  P  G  *  S  A  P  S  R  G  W  E  R  S  F  S  *  G  *  S  A  G  N  S  *  T  R  G  S  C  E  K  G  T  S  N  I  A  F  A  H  N  F  T  T  I  N  S  S  S  R  I  N  F  Q  L  S  S  T  W  G  I  R  Y  T  T  N  V  I  C  S  F  F  C  L  S  R  K  W  I  L  T  I  C  Y  P  I  R  C  C  F  I  F  F  P  V  H  Y  S  N  N  V  S  S  S  L  L  F  V  R  N  I  W  C  F  P  P  K  F  T  L  W  V  L  V  H  F  N  S  S  L  *  Y  S  I  I  W  F  Y  P  S  F  W  S  F  I  F  C  N  T  F  C  F  R :   A  C  T  S  I  R  G  K  L  W  D  S  I   : *  D  *  S  K  K  S  Y  K  Q  T  L  E  N  V  F  G  N  S  Y  I  *  D  S  N  G  W  K  S  L  C  Y  W  L  S  V  T  V  A  W  Q  S  S  S  I  L  T  N  H  E  N  F  I  Y  L  Q  F  H  Y  C  G  P  V  S  L  Q  R  C  S  F  T  R  M  S  R  Q  C  Y  V  I  L  F  F  T  *  F  C  *  S  S  V  S  S  L  I  L  Y  S  S  L  F  *  M  I  S  V  A  H  C  R  N  R  T  G  Y  I  C  D  A  L  D  T  C  V  N  T  *  L  R  S  H  L  L  *  T  R  S  P </second_frame>
            <third_frame>   G  F  F  V  H  V  A  A  K  :  V  E  S  I  H  Q  Y  I  E  S  M  K  T  A  Y  L  A  D  Q  R  R  R  G  D  G  S  D  P  F  L  E  A  D  R  R  E  T  A  K  Q  E  A  A  A  K  R  V  H  P  T  L  H  L  P  T  I  S  Q  P  S  T  Q  V  A  G  L  I  S  S  S  A  A  P  G  V  S  G  T  P  Q  T  S  S  A  V  S  S  A  S  A  G  S  G  S  S  L  F  A  T  P  S  V  A  A  S  S  S  S  L  F  T  T  P  T  M  S  A  P  V  S  S  L  F  G  T  S  G  A  S  P  Q  S  S  L  F  G  S  L  S  T  S  T  P  A  F  S  T  P  L  F  G  S  T  P  A  S  G  V  S  S  F  A  T  P  F  A  S   : G  P  A  L  A  S  G  A  S  F  G  T  Q  S  :  K  T  R  A  K  S  R  T  S  R  R  *  R  M  C  L  V  I  H  T  S  E  I  L  M  D  G  N  L  Y  A  T  G  Y  L  S  Q  *  L  G  K  A  Q  A  F  *  Q  I  M  K  I  L  S  T  S  S  F  I  I  V  D  Q  Y  L  C  R  D  V  R  S  Q  G  C  R  G  N  V  M  S  Y  Y  F  S  L  N  S  A  D  L  V  Y  Q  A  *  F  C  T  R  V  S  S  R  *  F  Q  L  P  I  V  E  I  E  L  V  I  F  V  M  L  W  I  L  V  *  T  L  D  *  D  L  I  C  C  R  R  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0226F10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111415" stop="111441"/>
                    <exon start="112299" stop="112800"/>
                    <exon start="115858" stop="115898"/>
                    <exon start="116579" stop="116614"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKQEAAAKRVHPTLHLPTISQPSTQVAGLISSSAAPGVSGTPQTSSAVSSASAGSGSSLFATPSVAASSSSLFTTPTMSAPVSSLFGTSGASPQSSLFGSLSTSTPAFSTPLFGSTPASGVSSFATPFASGPALASGASFGTQSKTRAKSRTSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 11 chains have been computed
$ 
$ memory statistics:
$ 4048 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 6992 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3496 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:18:38
-->
