<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:03:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603687" ref_strand="+" ref_description="SGN-U603687 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147775689|emb|CAN67023.1| (e_value=2e-98) hypothetical; (*ATH) AT5G15680.1 (e_value=6e-95) | Symbol: None | expressed protein | chr5:5101191-5110796 REVERSE | Aliases: F14F8.60, F14F8_60; (*SWP) sp|P40468|TAO3_YEAST (e_value=3e-17) Cell morphogenesis protein PAG1 OS=Saccharomyces cerevisiae GN=TAO3; ">
      <seq>gacactacagttgtcagaacagaactgccaagtgcagcactcttatctgctttagtgcagagcatggtggatgctatctttttccaaggagatctacgggaaacttggggagcagaggctcttaaatgggctatggaatgcacatcaagacacctggcctgccgctcgcaccagatataccgggcactgcggcctcgtgtaactaatgatgcttgtgtatccttgctacgttgccttcacagatgcttgagtaacccagtaccacctgttctaggctttgtcatggagatcttgttgacattacaggtaatggtggagaatatggagccagaaaaggtgatattatatccccagcttttctggggttgtgttgccatgatgcatacagacttcgttcatgtgtattgtcaggtgctggaactcgtttgtcgtgtaattgatcgcttatcgttccgagatagaactactgagaatgtgcttctctcaagcatgcccagagatgagcttgattcaaatgttggtgacaattctgacttccagcgtctggaatcacggaacgttagtgagccattaccctcaaatgcaaaggtgccagtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="1126" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="826" g_stop="226" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-U603687" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="826" e_stop="226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTACAGTTGTCAGAACAGAACTGCCAAGTGCAGCACTCTTATCTGCTTTAGTGCAGAGCATGGTGGATGCTATCTTTTTCCAAGGAGATCTACGGGAAACTTGGGGAGCAGAGGCTCTTAAATGGGCTATGGAATGCACATCAAGACACCTGGCCTGCCGCTCGCACCAGATATACCGGGCGCTGCGGCCTCGTGTAACTAATGATGCTTGTGTATCCTTGCTACGTTGCCTACACAGATGCTTGAGTAACCCAGTACCACCTGTTCTAGGCTTTGTCATGGAGATCTTGTTGACATTACAGGTGATGGTGGAGAATATGGAGCCAGAAAAGGTGATATTATATCCCCAGCTTTTCTGGGGTTGTGTTGCCATGATGCATACAGACTTCGTTCATGTGTATTGTCAGGTGCTGGAACTCGTTTGTCGTGTAATTGATCGCTTATCATTCCGAGATAGAACTACTGAGAATGTACTTCTTTCAAGCATGCCCAGAGATGAGCTTGATTCAAATGTTGGTGACAATTCTGACTTCCAGCATCTGGAATCACGGAATGCTAGTGAGCCATTACCCTCAAATGCAAAGGTGCCAGTCTTTG</genome_strand>
        <mrna_strand>GACACTACAGTTGTCAGAACAGAACTGCCAAGTGCAGCACTCTTATCTGCTTTAGTGCAGAGCATGGTGGATGCTATCTTTTTCCAAGGAGATCTACGGGAAACTTGGGGAGCAGAGGCTCTTAAATGGGCTATGGAATGCACATCAAGACACCTGGCCTGCCGCTCGCACCAGATATACCGGGCACTGCGGCCTCGTGTAACTAATGATGCTTGTGTATCCTTGCTACGTTGCCTTCACAGATGCTTGAGTAACCCAGTACCACCTGTTCTAGGCTTTGTCATGGAGATCTTGTTGACATTACAGGTAATGGTGGAGAATATGGAGCCAGAAAAGGTGATATTATATCCCCAGCTTTTCTGGGGTTGTGTTGCCATGATGCATACAGACTTCGTTCATGTGTATTGTCAGGTGCTGGAACTCGTTTGTCGTGTAATTGATCGCTTATCGTTCCGAGATAGAACTACTGAGAATGTGCTTCTCTCAAGCATGCCCAGAGATGAGCTTGATTCAAATGTTGGTGACAATTCTGACTTCCAGCGTCTGGAATCACGGAACGTTAGTGAGCCATTACCCTCAAATGCAAAGGTGCCAGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598765" ref_strand="+" ref_description="SGN-U598765 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157341331|emb|CAO49238.1| (e_value=2e-67) unnamed; (*ATH) AT5G15680.1 (e_value=1e-68) | Symbol: None | expressed protein | chr5:5101191-5110796 REVERSE | Aliases: F14F8.60, F14F8_60; ">
      <seq>gagcactggtctgattgggtctacagctaaaatccaactatcagaacaagaaaactgcagtaatgacccggcagtgaaacgcttcctttattgtttttgctacctgagaaagaaatcagtatcaggcaggaagatagaaactggaaaacaatatcaatgactaagtttgaagatgaagatggattattcactcgccaatgaattttcaagtagcaggatttccgattccggtacgaagtggacagtttctactggatatgaaatctgaagtttgcagttgcatcaaagtggggtaagattgagagaacaaaaagtaaaaaagaaatgaaggctgggagtgcagctaagctgattgttgacgcgttgcttcagaggttccttccgcttgctaggcgtcgcattgaaactgctcaagctcaggatggacagtaccttcggccatctgatccagcctatgagcaagtactggattcattggctatggttgcacgccacacacctgttcctctcctggaggcccttctaagatggagagaaagcgaatctcccaaaggtgcaaatgatgcatcaacatttcagagaaagcttgcagtggagtgcatcttttgttctgcgtgtattcgctttgtggaatgttgtccacaagaagggcttacagagaagctttggattgggcttgagaattttgtattcgattggctaataaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="15839" stop="11328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15539" g_stop="15310" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15309" i_stop="15100" i_length="210">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15099" g_stop="14910" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="420" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14909" i_stop="14171" i_length="739">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14170" g_stop="14052" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="539" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14051" i_stop="12682" i_length="1370">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12681" g_stop="12636" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="585" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12635" i_stop="11839" i_length="797">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11838" g_stop="11766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="658" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11765" i_stop="11680" i_length="86">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11679" g_stop="11628" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="710" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-U598765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15539" e_stop="15310"/>
          <exon e_start="15099" e_stop="14910"/>
          <exon e_start="14170" e_stop="14052"/>
          <exon e_start="12681" e_stop="12636"/>
          <exon e_start="11838" e_stop="11766"/>
          <exon e_start="11679" e_stop="11628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCACTGGTCTGATTGGGTCTACAGCTAAAATCCAACTATCAGAACAAGAAAACTGCAGTAATGACCCGGCAGTGAAACGCTTCCTTTATTGTTTTTGCTACCTGAGAAAGAAATCAGTATCAGGCAGGAAGATAGAAACTGGAAAACAATATCAATGACTAAGTTTGAAGATGAAGATGGATTATTCACTCGCCAATGAATTTTCAAGTAGCAGGATTTCCGATTCCGGTACCGTCTCTTTTCGGTTAGTACTTATCATTTTCCACTTCTCTTTGTAACAAATTGGCTGAATTTAGCATGATAACAGTATCTGGATGAACCCTAATTTATACTTTACATTTCGAATTCACGTACTCGACTCAAATTAGCTTGGGATCGAGGGGTAGTTGGTTGAGTCAAATTTCGGAGTCCTTCAATCTGAATTGGGATCACGCGCAGGTACGAAGTGGACAGTTTCTACTGGATATGAAATCTGAAGTTTGCAGTTGCATCAAAGTGGGGTAAGATTGAGAGAACAAAAAGTAAAAAAGAAATGAAGGCTGGGAGTGCAGCTAAGCTGATTGTTGACGCGTTGCTTCAGAGGTTCCTTCCGCTTGCTAGGCGTCGCATTGAAACTGCTCAAGCTCAGGTACTCTTTAACCAAAAGTTTTCTCTATTTTCATGTGCTGATACCATTTTGGGGATTATTTGTATGTTTGTGATGTACTATGATTATGATTCTTAACTTCATGTCAAGAAAGATATTTGCAAAATGCTTGTCATATTAGTCGGCAGCATAGTTCCTGTAACACTAAGAGAAAGTTCAAGATGGATTCTGGAGTCATATTCTTCCATTTATGCTGGTTTAGACAAAAGATAAACTTCTCCGAGAGTAGTTAATGCAAGCGCGTTAGAATTTGTTCTGAGGAATACCCTTTTATGCTGCCTCTAGCTCTCAAGTGTGGAAAGGAGAACTATGGTATGCTTTTACTAAGGGGGAATATATGGAGGAAAATAAACAAAGAGACTAAGTGGATTCAACATCTACTATATATACATAAAAAGTATTTTTGGCCTTATATATATAGTATTATTTTTTGATGATGAACCCACTTACGGTACCCTGGCTCCGCCAAGTTGGTCCTCTAACCCCACAAAGGGAAAATGACAAGCATGGTCTACTTAACATGAGGTGGAGCGGAATATTTTCGTTGTTTACTTTACATCCATTAGTTTGATTCTGGATTATGCAAAACAAGTTGTTTTATTGCTTAATTTTCTTTTTTAAATTATTATTTTAATTTTTTCCGGATAGGTTTTTGTGATTAATTTCCTTTTGACTTGGATTCTTCAACTTTATCTAAAATTTCTCACTTGACGAAGTACAGGATGGACAGTACCTTCGGCCATCTGATCCAGCCTATGAGCAAGTACTGGATTCATTGGCTATGGTTGCACGCCACACACCTGTTCCTCTCCTGGAGGCCCTTCTAAGATGGAGAGAAAGGTGCACATTTTCAGTTACAATTTATCCTAATCATGGTACATGGTTTTCATTTATGTGTTAAGTCAAAGTGTAGTTTTCATCATTCCGCTGCCAATTAATGCAAGTTCATTTTGGTGAAAGAAAATTTTTCCTTCGTAGTTCATACAGTTGTGCTAGCAAATCCATTTGGTAAATATATATTGCACAGTTGTTCCCCTTACATGTGCTGTATGAGAATTCACATACATGATAAACCATGGTAAATTATTCAGTAGCTTGTTAATTACTCCTTACTTCACAATATAAACATTTCTTTTAATTTTGGGAAATCTCAAATGTTTGCCATTATTCCAATCCCAATCATAATACTACTATTTTCAGCAATTCAAATTCTTTTAGCTATTAACATTTAAGATTGGGATAATGCCCAAGTACCCCCTAAACCTATGCCCGAAATCTCAGAGACACACTTATACTATATTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCATTATCTTGTGGTCCCAACGATGGTTGACTTTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAATAAGACTTTAGAATAGTATAAGTGTGTCTCTGGGATTTAGGGCATAGGTTGAGGGGGTACTTGTGCATTTTCCCTTTAAGATTTGATATGATCTTTTTTCTTCCGAGCTAGTTTTCAACCATTACAGCAACAACAAAATACCCAGTTTTCAACCATTATTTTACTATATTCATCCACTAACACTTATATAAAAATAAACTAAATTAACGTCTTAAACTGCGTGTCCAGGTAAAATGGGATGGCGGAATAATAGTTGTAGTTTCATTTCGTTCTAGTTAATCTGGGACTGGATAAGTATGTTACAGTTTTGAAAAAGTAGAACTAGGATAAGGGAAAATAGAGGAGATCAGTTGCCACGCGGGCAATTGCATTTTCTGCTACTGTTCTTGAATATGGACGACCTCTAATAGCTGGGGCCTTGACTTACCATTTTTGGCTTGAGGTGACCATGGGGAGATTTTACACGTGATAAGTGTTTTATTGTTCAATAAAGAAACCTTGATCTTTCTGAAATTATCACTCTTATAGTCTTCTTTTATGAAGTAGTGCAGTTCATTGATTGAGATCTAGGGGACGCATAGGAAGTACAAATCTATCATGAAAATCGCCATGCCATCAATCTATTTTTATTTCTGATGAAGCTTTGTTAATGTGATGGGATTACACTACAATAATGTGTATACTACAGTAGAGAGATTTTTCAATGCTTTGAATCTGATGTACTATGGTTGGTTGCAGCGAATCTCCCAAAGGTGCAAATGATGCATCAACATTTCAGAGAAAGGTTTGTTAATCTACCAACTCTCTTGTCTGTGACTCCTTTTCGAAAAGGAAGTCATGAGTCCTTCCCTCATTCACATCTTTAGCATGGAATTTGCTATGAGGTTGTTCCTCTGCACTTCCATTTTCTGGTTATTGAACAAATTCATTGAAAATGACTTATCACACAATCTATGAAATAGCAAAAGAATGGAACTATGGGAGTCACTTCTTTTAAATCACACATCTGGTAGGCTGAAATTACAACACCGCTATGCAGCTCAAAATATTTCCCGGCAAAATAGCCGTCCTCTCACTTTAAGAGAAACTTAACTTTCCAAGTGTAGAACCTCATGTGTTTGCTTCCTTTTGGGACTCGATAAAACTGGAGAACCTCATAAAGTTGACCTTAATGTGTATATATATATAATATATAAAGAGAGAACCTCATGCAGTTGTCTGCAGGAAGTTGGAAGAAACCAGAAAGGAAGAGATTGTTTTTATAATATAAGAAAATAAACCCAAAACTGTTCTAACTGAAGGATTAAAAGAAGTAGCCATTATTACCTCAACTGGCAGAGTAATAAGCATGAAGGATTACTGCTGTACATTTAGGCCACTATTCATTTCGTGACTAATGATACCAAAGTGGTATTATATCATAGGTACTTTACATGCATATTCTCCTTTTGTGAAGTATCTGATTAAGTTCTGTATGATTTAGCAACTTAAGTATCTTAGTTGAAGCTCGTGAGGAAGTTCTTTCATGGTTCTTAAATTTCTCAAATCCTTATAAAAAAAGTAAGTTCTTCCCTGGTTCAGCTTGCAGTGGAGTGCATCTTTTGTTCTGCGTGTATTCGCTTTGTGGAATGTTGTCCACAAGAAGGGCTTACAGGTAGATTTACAGATTCAACAAGTCTACCTTTCTCTAGGAAGCTAATCCACTGCTAGTTGAGTAAAATGTGCCTCCTTGAACTGCAGAGAAGCTTTGGATTGGGCTTGAGAATTTTGTATTCGATTGGCTAATAAATGC</genome_strand>
        <mrna_strand>GAGCACTGGTCTGATTGGGTCTACAGCTAAAATCCAACTATCAGAACAAGAAAACTGCAGTAATGACCCGGCAGTGAAACGCTTCCTTTATTGTTTTTGCTACCTGAGAAAGAAATCAGTATCAGGCAGGAAGATAGAAACTGGAAAACAATATCAATGACTAAGTTTGAAGATGAAGATGGATTATTCACTCGCCAATGAATTTTCAAGTAGCAGGATTTCCGATTCCG..................................................................................................................................................................................................................GTACGAAGTGGACAGTTTCTACTGGATATGAAATCTGAAGTTTGCAGTTGCATCAAAGTGGGGTAAGATTGAGAGAACAAAAAGTAAAAAAGAAATGAAGGCTGGGAGTGCAGCTAAGCTGATTGTTGACGCGTTGCTTCAGAGGTTCCTTCCGCTTGCTAGGCGTCGCATTGAAACTGCTCAAGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAGTACCTTCGGCCATCTGATCCAGCCTATGAGCAAGTACTGGATTCATTGGCTATGGTTGCACGCCACACACCTGTTCCTCTCCTGGAGGCCCTTCTAAGATGGAGAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCTCCCAAAGGTGCAAATGATGCATCAACATTTCAGAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGTGGAGTGCATCTTTTGTTCTGCGTGTATTCGCTTTGTGGAATGTTGTCCACAAGAAGGGCTTACAG......................................................................................AGAAGCTTTGGATTGGGCTTGAGAATTTTGTATTCGATTGGCTAATAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566846" ref_strand="+" ref_description="SGN-U566846 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157341329|emb|CAO49236.1| (e_value=0) unnamed; (*ATH) AT5G38840.1 (e_value=3e-174) | Symbol: None | forkhead-associated domain-containing protein / FHA domain-containing protein, related to adaptor protein kanadaptin (Homo sapiens) gi:13562130:gb:AAK29177 | chr5:15568526-15572300 FORWARD | Aliases: K15E6.5, K15E6_5; (*SWP) sp|Q9BWU0|NADAP_HUMAN (e_value=6e-29) Kanadaptin OS=Homo sapiens GN=SLC4A1AP; ">
      <seq>ttttgggatgctttagacccgtatccggagggcttcaagattggggtccaatttctccacctcttcttgctgttccttccgtcttccattctcctccaccttcctccttgccactaagttcatcttcccgtcttagaatgacgactgacatgaacccgccgccgccccggaaccctaaaaccgccgcggttgtaacccaggaacctcatgcttcaaacttagatgaagtttcgacctcaaactctactcaaacttcaatgaaacccccacttctaagcaattcggattcagattcggattcatccaaacaattcgatcaacagaagtcccaatcacaaccttttatttctcaaagtgattcagaacctactagtgattcagaacctactagtgtcaatgcccaaaaagactccaacttgagtttaatgaaacctccacctccaaaattccttagcaagtcgaactcggataaaattggtgctgaacatgaacaaagtgccaattctcaagatgactccagctctgtgtcccgaagtaacgacaccaatgaagacaaaaagcaagaacaacgatcagctgcttcggttccgtacacgattccgacctggagtgggcgtccgtgtcatcggttttatcttgaagtgcttaaagatggatcgatcattgataaatttgatgtgcacaagaagggggcgtacatgtttgggcgtgttgatctttgtgattttgttcttgaacacccgaccatctctcgctttcacgctgttttacagttcaagggaaacggcaatgcttatgtttatgaccttggtagtacacacgggacatttgttaataaaaaagaggtgacaaagagagtttttgtggatctccatgttggtgatgtccttcgatttggacaatcatcacgattatacatatttcaaggaccaactgacttgatgccaccggaagctgacctgaagagggtaagacaagcgaagatccgggaagagatgcatgacatggaatcatcacttctccgtgcaaaactggaagcatctcgtgcagatgggatctcatggggaatgcgtgatgatgctattgaggagaacgaggatgaagttgacgaaataacttggcaaacttacaagggacagcttacagagaagcaggaaaaaacacgtgaaaaagttgtgaaaagacttgaaaagattgctcatatgaaaaaagagatagatgctattcgggccaaggatatttctcaaggtggattgacacagggacaacaaactcaaattgctcgtaatgaacagaggatatcacagatagtggaagagcttgaaaacttggaagagactttaaatgagagtatacgggaaagtcttggtgcacgcactggaaggacatccaatggaaagaaaaaggagcctgaagaagaggagttttcaagtgaggaggatgaattctatgatcgcacacagaagccttcaaagagaaaagttggcgaaaatcaatcaattgagacagctgattctcttcttgataagaaggatgccattgtcagggaaatggaagacaagagaaaattatttcttgatgaaaaggatggtacaggtcaggaaagtgcagttgaagctggagatgaactagatgcttacatgtctggcctttcatctcagctagctctggagaaggaggaaaagcttcacaaggaactcgctactctccagacggagttggacagggtactttacttgcttaagattgctgatcctactggtgaggctgctaaaaagagggagctgaaagtacaagaaccaaagaccaatatgaccaaaactgttgcaactgctgcccgtcagcagcctccacccgagcagaacaaaaaagatagagcagaacctaaggttttaatggagaaacaggatactattgatgcgaactcttcattcagtcaagaaacaaagaaggagattgtggctgatgcagctggtggtaaaaatgttgtgtacattgctagtaagccccaatggcttggtgctgtagatgaaaagaaaaaacaagagaaagttattgaacgacagacagaactgcaagacaatgatcaatttgttgactacaaagacaggaataaagttttggtaaaaccagatgctacacagttgactgctgactctggaattgaaagtgcagctcctggactaataataaggaagcgcaagcaagttgagaagtctgatgttactgaagtcaaacattctcaagaatccactggagctgatttacaagcagaagatgcggtagctctgctgttgaaacattctcaaagataccatagtactgatgatgaagtggaatccagcggaggtgatgtatcacatgaaagtcaaacgaggaaggaaaagaaaaaaaagcaaaagaaggttcttggtccagacagaccatcatttctgaagagtgagaaggattacaattcttgggttcctcctgaagggcaatcaggtgacggacgcacctcactgaatgatcgtcttggttactgaatggtagagattttgatcgtttgacacataactaactatgggatggggtagctcggcttacagattgctgatggatcatgtaactaaatagcatttacagcttggtttgagatctcatcttgcgaaaatccttcacagggacatctgagcgagaacatttgttgtttgaagagaagaaaagaaatagaaaacgtgaagatacaagagctggattatgatcccattctcccactcttgctcctgtaccttctgttaacaagaacctgacaccttcctgattgaattgtatatagagattgactcggaaaggatagagataatgagaaaatgtgcttgtaatgcaatgctttgtgcccgctccaaaaaagctcataagtgattttgtgtagcatgatacaagtcgattttatttttgtataatgtgttcgacaaccaattaatcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="+" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="20434" stop="28684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20734" g_stop="21412" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21413" i_stop="21950" i_length="538">
            <donor d_prob="0.736" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21951" g_stop="22036" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="765" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22037" i_stop="22236" i_length="200">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22237" g_stop="22316" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="845" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22317" i_stop="22595" i_length="279">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22596" g_stop="22651" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="901" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22652" i_stop="23113" i_length="462">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23114" g_stop="23162" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="950" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23163" i_stop="23553" i_length="391">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23554" g_stop="23700" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="951" r_stop="1097" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23701" i_stop="24234" i_length="534">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24235" g_stop="24330" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1098" r_stop="1193" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24331" i_stop="24440" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24441" g_stop="24554" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1194" r_stop="1307" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24555" i_stop="24757" i_length="203">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24758" g_stop="24882" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1308" r_stop="1432" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="24883" i_stop="25371" i_length="489">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25372" g_stop="25604" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1433" r_stop="1665" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25605" i_stop="26977" i_length="1373">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="26978" g_stop="27787" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1666" r_stop="2475" r_length="810" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="27788" i_stop="27888" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="27889" g_stop="28384" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="2476" r_stop="2971" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="+" ref_id="SGN-U566846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2971</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20734" e_stop="21412"/>
          <exon e_start="21951" e_stop="22036"/>
          <exon e_start="22237" e_stop="22316"/>
          <exon e_start="22596" e_stop="22651"/>
          <exon e_start="23114" e_stop="23162"/>
          <exon e_start="23554" e_stop="23700"/>
          <exon e_start="24235" e_stop="24330"/>
          <exon e_start="24441" e_stop="24554"/>
          <exon e_start="24758" e_stop="24882"/>
          <exon e_start="25372" e_stop="25604"/>
          <exon e_start="26978" e_stop="27787"/>
          <exon e_start="27889" e_stop="28384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGATGCTTTAGACCCGTATCCGGAGGGCTTCAAGATTTGGGTCCAATTTCTCCACCTCTTCTTGCTGTTCCTTCCGTCTTCCATTCTCCTCCACCTTCCTCCTTGCCACTAAGTTCATCTTCCCGTCTTAGAATGACGACTGACATGAACCCGCCGCCGCCCCGGAACCCTAAAACCGCCGCGGTTGTAACCCAGGAACCTCATGCTTCAAACTTAGATGAAGTTTCGACCTCAAACTCTACTCAAACTTCAATGAAACCCCCACTTCTAAGCAATTCGGATTCAGATTCGGATTCATCCAAACAATTCGATCAACAGAAGTCCCAATCACAACCTTTTATTTCTCAAAGTGATTCAGAACCTACTAGTGATTCAGAACCTACTAGTGTCAATGCCCAAAAAGACTCCAACTTGAGTTTAATGAAACCTCCACCTCCAAAATTCCTTAGCAAGTCGAACTCGGATAAAATTGGTGCTGAACATGAACAAAGTGCCAATTCTCAAGATGACTCCAGCTCTGTGTCCCGAAGTAACGACACCAATGAAGACAAAAAGCAAGAACAACGATCAGCTGCTTCGGTTCCGTACACGATTCCGACCTGGAGTGGGCGTCCGTGTCATCGGTTTTATCTTGAAGTGCTTAAAGATGGATCGATCATTGATAAATTTGATGTGTATGTGTCTGCAAACTTATGTTTGGTTCCTCATAAGCTTATTCTTCTGTTGTGCTGGGTTTTAAGTACCACTTTCGGTAACACAATCAAACGAATCGATAAGGAAGAAATTTTATTGTGTCCTTCTAATTCTATGAATATATTGACTAAAACAAAATAACTACTGTCCTTGATTATCACATTAAGTTTTTTTTTTTTTGAGTAGTATCTATATTTTTGGTACAATTGCCTAATGTTTAGTTTATTGGTTTGAAATTGTCTATCATATTACTAGAAGCTACGTGTAAGGGTTACTGAGGTTTCTTATCAAGTGCTATCTTATTTTGTAGCTCCTACAATTGAACTTGCACAAGTTTAATTTTTCTAGTTAAACATTCTGTACGGGTTTCTATATCTCTCTTACTGTTCATGTCTCCCGAATGGGGAGGACGGCCCATTTGCATTGTTTCTGGGACTCTGCAAGGCTTCATTTTTTGTATCAGTTGCTGGGATTTTACTTTGTTTAATGGAATTCTTATCACCTTTTACTGCTGTCCAGGCACAAGAAGGGGGCGTACATGTTTGGGCGTGTTGATCTTTGTGATTTTGTTCTTGAACACCCGACCATCTCTCGCTTTCACGCTGGTAATGCTTCTTTACTTCTACAAGTGGTATATATGGGACTAACTTTGCTCTACCAGCCTTTTATTTCCTTATATCGTTGTGCTGTTGTGCTCTATGGATATTCTTGGTGTAATTAACACAATTCATATGCAAATATTTGTTCAGTTTTTTAAAAAAGATTTTTGATTGGCGTTGATTATGTAACCACCATCTCTTTGCAGTTTTACAGTTCAAGGGAAACGGCAATGCTTATGTTTATGACCTTGGTAGTACACACGGGACATTTGTTAATAAAAAAGAGGTATTTTAACGTATTATTATACCTATCAGTTACTCTAGTTAACTCAGAATATAAAACAGATGAGGAGGTTCAAATAATCAATTGCATGCCTTCAGCTTATGTATCTTGCCTTCAGCTTATGCATCATTCCTTTTTATAGTTGTCTGCTCTATCCTCTGCCCATAATTGTTACTGTCAAGATCATTAGTTCCATCCTTGTCATTTGTTATGGTGTGGTTTCATTTTTCAAATTAGTAAAGAGCATATATACTAATGGCTTGCCCATTTGCAAACTATTAGGTGACAAAGAGAGTTTTTGTGGATCTCCATGTTGGTGATGTCCTTCGATTTGGACAGTAAGTTATTAACTCCAGCTTGTTGAAGAAAACTGGCACTCTATGTTGTTATGTTATCTATCTGATAGGATGATAGTTAAAATCATGTATATTTGAGATTCTAGGATAGACTATATTCATTATGGATGGTTGCCTCATTCTGATATTATGATCCAGTAGTTCCACAGTGAGCTCTTTCATTTATCTTTTTTTAGATACAAATTTCATCATTCAAAATGAGAAGGCAAGTTGGATGAGAAGATTTTAAGACCAACAAAGTAATAATACGATGAATGTTGGGCCTTTAAGATGCAACATTTTCACAAGAAGAGTGTCCTAGAAGTACAAAGGTTATGTTGCAGGCGCAATGATACAAAACTACACTGGATTAAAAATGATCATGCTCGGAAGGAATAAACAAGTTCTCTTACTAGTGGTGTTATAATGTTTTGGCATTTTTCTAATGTTCTTCCCTTTCTACAGATCATCACGATTATACATATTTCAAGGACCAACTGACTTGATGCCACCGGTATGACAGTTGTGCTATTGCAATTCCAAAGATACTAATTATTTTTGTAATGACAATTGGAATGATATTAACTCCTATTTATTCCTTATCTATGTCACACCAGATGTTCTAGGGGTACAAGCTATTTAATGCCCTTGGTCGGATAATTCATAATTGTTCTTATTTATAAGTTAAAAAAGCAGAGTTCCTTTTATTTCTTAGAACATTTTATACAGTTATTCTTGCTTGTCTTGCCAATGCAATATAGCATTTTTCATCAAATCCCTTTTGGAACTGATTACCAGAACAGATGACACATATTCAACAAATTGAACGGCAAAATTTTACCAAACAGAACACTTTTATTAGAGTTAACTATTTTCAAATGCATTACTTTGTTTTTATGTTGTAGGAAGCTGACCTGAAGAGGGTAAGACAAGCGAAGATCCGGGAAGAGATGCATGACATGGAATCATCACTTCTCCGTGCAAAACTGGAAGCATCTCGTGCAGATGGGATCTCATGGGGAATGCGTGATGATGCTATTGAGGAGAACGAGGTCAGTTTATGTGTCTCATTTTCCTCTAGGGTATTTGGTATATGTTACAATTCTTTTTGGATAACAGTTATTACAGTTACTCTAGGATGTTCCCCTACACATATCAACTAATTTCTCACTGGCAAGGTTTTTAGTGTTAATTTTTCTCTTTTTGTTTTCCGAATGTTCCTCTCTGTAGGTTGTTAGACAACTTAAATCTCTGCAGAGGTGCAGAGCCCAATCCCCAACCCACCGTTATTTTTTTTTTGAAAGAAATTGTTTATGTATTTAAAATATTCAGCAACACCTTTGACAATGTTGTGGACTCCATAATAAGTGATACTGTCCAAGGAATTAAAGAGTCACGGGTTGTGCATGTAACTGTATGCTTTGGTTGCTTTCACCTGCTATAGACGAGTTAAACTTTTTTTCTGAGCACTGATCCCTTGCACACTGCAGTCATTCTTTCCTGCTATTATTCATTCAATATTTTAAATTCTTGTAGCATGTGATGAAATCCTGATAGAGTGCTATCCGAATTGATTTTGATGCTAGGATGAAGTTGACGAAATAACTTGGCAAACTTACAAGGGACAGCTTACAGAGAAGCAGGAAAAAACACGTGAAAAAGTTGTGAAAAGACTTGAAAAGGTACCCGTTTACTTAATTTCTCTATGTTACTGTTAACCTGAAGGATCTCTTGAGGAAAAGTACCCCTTTGCAAATGTATGCGAATCTTATTGTACCCCTTTTGATTTCAGATTGCTCATATGAAAAAAGAGATAGATGCTATTCGGGCCAAGGATATTTCTCAAGGTGGATTGACACAGGGACAACAAACTCAAATTGCTCGTAATGAACAGAGGATATCACAGGTTAATAGCTCCTTCATCATTTTCTCTTTGATTCCTTAATACTCAAAGAAGATATTCTTTTGTTCTATTTGGTGTTGAATATCACATGTTCATTTAACTCCTTTCTTATAAGGTCTAATAATACTCCAGTATACTGAGTGTTTTAGCAATATCCTAGGGTAGCTTGGCCACTTCCTTTAATTCATGTGTTGAAAATTTATCAGATAGTGGAAGAGCTTGAAAACTTGGAAGAGACTTTAAATGAGAGTATACGGGAAAGTCTTGGTGCACGCACTGGAAGGACATCCAATGGAAAGAAAAAGGAGCCTGAAGAAGAGGAGTTTTCAAGGTTAGTATGTAATTTGCAGATCTTCAATGATCTCAACTAACTTCATTGTTTGGTTGATGCTTTATGCAGTACATAATTCTTGAAATGATCTTAGGAATGTTAGATTGGCGTTTGGCCATGAAAATTGCGAGTATTTGAAAAAAAGTTGTGTTTGGCCATGAGTACCAATTGAAGTTGTTTCTGAATTTTTGTGAGTATTTTAGAGTGGAAGTATTGTTTTGGTGTTCTTTCACATTCCTGAAAATACAATTCTTTGGCCAAACGCACACTTGAAATTGTCGTGATTTTTATTTAGTGAGTGGAGCTAGTCCAGTGACAACATGTGGTTAGTACATAATTTGTAGATCTTCAATAATTTCAACAAATTTCATTGTGTACGCCGTATGTTTGCTTGAAATGATCTATATAAGGTTGGCAATATACTTGTGATTGTCATTAGTGAGTTGAGCTAGCGCATTGACAAGGTGACTTGAATTTCTTACCGCACAGTGAGGAGGATGAATTCTATGATCGCACACAGAAGCCTTCAAAGAGAAAAGTTGGCGAAAATCAATCAATTGAGACAGCTGATTCTCTTCTTGATAAGAAGGATGCCATTGTCAGGGAAATGGAAGACAAGAGAAAATTATTTCTTGATGAAAAGGATGGTACAGGTCAGGAAAGTGCAGTTGAAGCTGGAGATGAACTAGATGCTTACATGTCTGGCCTTTCATCTCAGCTAGGTGCGTGATTATTTTAGCAAATAAACTCCAAAATTGTCTGAATGCTAATTTCTTATCTCGTTGGAGGTAACATTTGGGTTTCTTTTTATGATATTATATATTTGAGATTTCAGTTAAATTTGACAAAGCTTGTGGAGTATCTGGTGGCATCTTATCATGCACTGGTCTCTCACTTTGTCTCTTCTGTTCATAATGGGACCAATCCCTAATGATTGGTATTATTTTTTTTTTTTGGTAACAAATGTAAAATATTACCATGCCATCAAGGAACAAGTACAAACTAAAGAGCACCTATTTCCAAGATCAGGAACTAGGCCTCCAACCAAAACAAACTAGTTACAAAGTAAATGCTGAATGAAAGAACTACATTTCTGTGCTTTCTTGGAATGACTAACTAAATTTAACCTTTCTATTATCTCCTTCTTTAACTGTGTTGCTACCTCTTTCGTATGTACATGCTTCCCTTTGAACCTTCTCCAATTTCTTATTTGCCAAGTGGTGTAAAACAGCTCCACAAATGGCTGCAATTACCTCCTCCTTAAATTGCTTCCAATGTTTCTTTTTGATGTTGCCTAGTACTTGATTGATCCCCTCTTTTTGCAAGGCAATACCTGTCCATTCACTAATCTCCTGCCATACACTTTTCATCCATGTGCATTTTTCAAACAGGTGTTCATTTGTTTCCATAACTTTCCCATCACATAGGCAGCATTCAATATCATCAACTTGAATATGCATCTTCAAGTTGATGATATTTTTAAGTTTTTTTTATTTTTTTTAATACATACAAATATGGTGCCTGCAGCTATTTTTTGGTGCATCTGGAATGAAAGAAATTGTAGATGTTTCGATGGGGTTTCAATTCCTAACCACATTCTTAAATCCAACTGTTTAGTCTGCTTATATAGTTGGTTCAACCAGGCCCCTGTAACCACAGTTGATCTTTTTTTGGACTTTGTCTGCTCTTTAGTCATCTAGTAAATTCTTGTACAGGAGCAGACCCCTTTTATGCTGTAAATATTTTGCCTTGCATCTTCTTGATGCCTTCTAACGAATTCTCCTTCATAAAAAAAAAAAGCTGTCAGTTTATAAGAAGAATGATTGTGCATTTATCTAAGAGAAATGCATTGGGTAGTTTTGTTCAGTTAACAACATGCATATCTGCTGAACGGTGTAGCTAAATCCTTCCACTCCAGTAACACTTGCATATTTATGTGTATGAGCATTCAATATTAAGCAAGGGATCATTTCTGATAGTGGAAGAATGGGTATCCCACCCATGAATTATATTCAAACTCCTTTATTGAGATAGAATTTTGATAGAATTTAGTATGCGTCTTTTGTTGACCTTTTACTTTTTGGTTCTGTGCCAGCTCTGGAGAAGGAGGAAAAGCTTCACAAGGAACTCGCTACTCTCCAGACGGAGTTGGACAGGGTACTTTACTTGCTTAAGATTGCTGATCCTACTGGTGAGGCTGCTAAAAAGAGGGAGCTGAAAGTACAAGAACCAAAGACCAATATGACCAAAACTGTTGCAACTGCTGCCCGTCAGCAGCCTCCACCCGAGCAGAACAAAAAAGATAGAGCAGAACCTAAGGTTTTAATGGAGAAACAGGATACTATTGATGCGAACTCTTCATTCAGTCAAGAAACAAAGAAGGAGATTGTGGCTGATGCAGCTGGTGGTAAAAATGTTGTGTACATTGCTAGTAAGCCCCAATGGCTTGGTGCTGTAGATGAAAAGAAAAAACAAGAGAAAGTTATTGAACGACAGACAGAACTGCAAGACAATGATCAATTTGTTGACTACAAAGACAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAGGTATGCCACTTATTTGGTTCATGCCTACGCTTAGTTGCTTACTAATGGATGTTCAAGTTTTTTTTTGACAATTTTGCTGGTCTTTGTGAAACTTTTACCAGGGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAAATGTGCTTGTAATGCAATGCTTTGTGCCCGCTCCAAAAAAGCTCATAAGTGATTTTGTGTAGCATGATACAAGTCGATTTTATTTTTGTATAATGTGTTCGACAACCAATTAATCAAGA</genome_strand>
        <mrna_strand>TTTTGGGATGCTTTAGACCCGTATCCGGAGGGCTTCAAGATTGGGGTCCAATTTCTCCACCTCTTCTTGCTGTTCCTTCCGTCTTCCATTCTCCTCCACCTTCCTCCTTGCCACTAAGTTCATCTTCCCGTCTTAGAATGACGACTGACATGAACCCGCCGCCGCCCCGGAACCCTAAAACCGCCGCGGTTGTAACCCAGGAACCTCATGCTTCAAACTTAGATGAAGTTTCGACCTCAAACTCTACTCAAACTTCAATGAAACCCCCACTTCTAAGCAATTCGGATTCAGATTCGGATTCATCCAAACAATTCGATCAACAGAAGTCCCAATCACAACCTTTTATTTCTCAAAGTGATTCAGAACCTACTAGTGATTCAGAACCTACTAGTGTCAATGCCCAAAAAGACTCCAACTTGAGTTTAATGAAACCTCCACCTCCAAAATTCCTTAGCAAGTCGAACTCGGATAAAATTGGTGCTGAACATGAACAAAGTGCCAATTCTCAAGATGACTCCAGCTCTGTGTCCCGAAGTAACGACACCAATGAAGACAAAAAGCAAGAACAACGATCAGCTGCTTCGGTTCCGTACACGATTCCGACCTGGAGTGGGCGTCCGTGTCATCGGTTTTATCTTGAAGTGCTTAAAGATGGATCGATCATTGATAAATTTGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAGAAGGGGGCGTACATGTTTGGGCGTGTTGATCTTTGTGATTTTGTTCTTGAACACCCGACCATCTCTCGCTTTCACGCTG........................................................................................................................................................................................................TTTTACAGTTCAAGGGAAACGGCAATGCTTATGTTTATGACCTTGGTAGTACACACGGGACATTTGTTAATAAAAAAGAG.......................................................................................................................................................................................................................................................................................GTGACAAAGAGAGTTTTTGTGGATCTCCATGTTGGTGATGTCCTTCGATTTGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCACGATTATACATATTTCAAGGACCAACTGACTTGATGCCACCG.......................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGACCTGAAGAGGGTAAGACAAGCGAAGATCCGGGAAGAGATGCATGACATGGAATCATCACTTCTCCGTGCAAAACTGGAAGCATCTCGTGCAGATGGGATCTCATGGGGAATGCGTGATGATGCTATTGAGGAGAACGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTTGACGAAATAACTTGGCAAACTTACAAGGGACAGCTTACAGAGAAGCAGGAAAAAACACGTGAAAAAGTTGTGAAAAGACTTGAAAAG..............................................................................................................ATTGCTCATATGAAAAAAGAGATAGATGCTATTCGGGCCAAGGATATTTCTCAAGGTGGATTGACACAGGGACAACAAACTCAAATTGCTCGTAATGAACAGAGGATATCACAG...........................................................................................................................................................................................................ATAGTGGAAGAGCTTGAAAACTTGGAAGAGACTTTAAATGAGAGTATACGGGAAAGTCTTGGTGCACGCACTGGAAGGACATCCAATGGAAAGAAAAAGGAGCCTGAAGAAGAGGAGTTTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGATGAATTCTATGATCGCACACAGAAGCCTTCAAAGAGAAAAGTTGGCGAAAATCAATCAATTGAGACAGCTGATTCTCTTCTTGATAAGAAGGATGCCATTGTCAGGGAAATGGAAGACAAGAGAAAATTATTTCTTGATGAAAAGGATGGTACAGGTCAGGAAAGTGCAGTTGAAGCTGGAGATGAACTAGATGCTTACATGTCTGGCCTTTCATCTCAGCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGAGAAGGAGGAAAAGCTTCACAAGGAACTCGCTACTCTCCAGACGGAGTTGGACAGGGTACTTTACTTGCTTAAGATTGCTGATCCTACTGGTGAGGCTGCTAAAAAGAGGGAGCTGAAAGTACAAGAACCAAAGACCAATATGACCAAAACTGTTGCAACTGCTGCCCGTCAGCAGCCTCCACCCGAGCAGAACAAAAAAGATAGAGCAGAACCTAAGGTTTTAATGGAGAAACAGGATACTATTGATGCGAACTCTTCATTCAGTCAAGAAACAAAGAAGGAGATTGTGGCTGATGCAGCTGGTGGTAAAAATGTTGTGTACATTGCTAGTAAGCCCCAATGGCTTGGTGCTGTAGATGAAAAGAAAAAACAAGAGAAAGTTATTGAACGACAGACAGAACTGCAAGACAATGATCAATTTGTTGACTACAAAGACAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG.....................................................................................................GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAAATGTGCTTGTAATGCAATGCTTTGTGCCCGCTCCAAAAAAGCTCATAAGTGATTTTGTGTAGCATGATACAAGTCGATTTTATTTTTGTATAATGTGTTCGACAACCAATTAATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578615" ref_strand="+" ref_description="SGN-U578615 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|121689|sp|P27057|GAST1_SOLLC (e_value=2e-51) Protein; (*ATH) AT3G02885.1 (e_value=2e-30) | Symbol: None | gibberellin-regulated protein 5 (GASA5) / gibberellin-responsive protein 5, identical to GASA5 (Arabidopsis thaliana) GI:1289320 | chr3:638111-639059 REVERSE | Aliases: None; (*SWP) sp|P27057|GAST1_SOLLC (e_value=1e-52) Protein GAST1 OS=Solanum lycopersicum GN=GAST1; ">
      <seq>ttagattatgctatgtatggcttttgaactgaactatgagaaaaaaattgacttgaaacgaacaaaaagggcaaaaaacttcttacactatgcgaaattgaaataaaatgctccggttaatagtttggtccaaaaatattgatgcagttaatagattttggaccaaactatcgatgctgtgtatagatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30772" stop="28826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30472" g_stop="30059" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="474" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="508" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29126" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="1013" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-U578615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1013</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30472" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGC</genome_strand>
        <mrna_strand>TTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="826" PGL_stop="226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="826" e_stop="226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="826" e_stop="226" e_length="601"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="826" stop="226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACACTACAGTTGTCAGAACAGAACTGCCAAGTGCAGCACTCTTATCTGCTTTAGTGCAGAGCATGGTGGATGCTATCTTTTTCCAAGGAGATCTACGGGAAACTTGGGGAGCAGAGGCTCTTAAATGGGCTATGGAATGCACATCAAGACACCTGGCCTGCCGCTCGCACCAGATATACCGGGCGCTGCGGCCTCGTGTAACTAATGATGCTTGTGTATCCTTGCTACGTTGCCTACACAGATGCTTGAGTAACCCAGTACCACCTGTTCTAGGCTTTGTCATGGAGATCTTGTTGACATTACAGGTGATGGTGGAGAATATGGAGCCAGAAAAGGTGATATTATATCCCCAGCTTTTCTGGGGTTGTGTTGCCATGATGCATACAGACTTCGTTCATGTGTATTGTCAGGTGCTGGAACTCGTTTGTCGTGTAATTGATCGCTTATCATTCCGAGATAGAACTACTGAGAATGTACTTCTTTCAAGCATGCCCAGAGATGAGCTTGATTCAAATGTTGGTGACAATTCTGACTTCCAGCATCTGGAATCACGGAATGCTAGTGAGCCATTACCCTCAAATGCAAAGGTGCCAGTCTTTG</gDNA_template>
            <first_frame> D  T  T  V  V  R  T  E  L  P  S  A  A  L  L  S  A  L  V  Q  S  M  V  D  A  I  F  F  Q  G  D  L  R  E  T  W  G  A  E  A  L  K  W  A  M  E  C  T  S  R  H  L  A  C  R  S  H  Q  I  Y  R  A  L  R  P  R  V  T  N  D  A  C  V  S  L  L  R  C  L  H  R  C  L  S  N  P  V  P  P  V  L  G  F  V  M  E  I  L  L  T  L  Q  V  M  V  E  N  M  E  P  E  K  V  I  L  Y  P  Q  L  F  W  G  C  V  A  M  M  H  T  D  F  V  H  V  Y  C  Q  V  L  E  L  V  C  R  V  I  D  R  L  S  F  R  D  R  T  T  E  N  V  L  L  S  S  M  P  R  D  E  L  D  S  N  V  G  D  N  S  D  F  Q  H  L  E  S  R  N  A  S  E  P  L  P  S  N  A  K  V  P  V  F  </first_frame>
            <second_frame>  T  L  Q  L  S  E  Q  N  C  Q  V  Q  H  S  Y  L  L  *  C  R  A  W  W  M  L  S  F  S  K  E  I  Y  G  K  L  G  E  Q  R  L  L  N  G  L  W  N  A  H  Q  D  T  W  P  A  A  R  T  R  Y  T  G  R  C  G  L  V  *  L  M  M  L  V  Y  P  C  Y  V  A  Y  T  D  A  *  V  T  Q  Y  H  L  F  *  A  L  S  W  R  S  C  *  H  Y  R  *  W  W  R  I  W  S  Q  K  R  *  Y  Y  I  P  S  F  S  G  V  V  L  P  *  C  I  Q  T  S  F  M  C  I  V  R  C  W  N  S  F  V  V  *  L  I  A  Y  H  S  E  I  E  L  L  R  M  Y  F  F  Q  A  C  P  E  M  S  L  I  Q  M  L  V  T  I  L  T  S  S  I  W  N  H  G  M  L  V  S  H  Y  P  Q  M  Q  R  C  Q  S  L </second_frame>
            <third_frame>   H  Y  S  C  Q  N  R  T  A  K  C  S  T  L  I  C  F  S  A  E  H  G  G  C  Y  L  F  P  R  R  S  T  G  N  L  G  S  R  G  S  *  M  G  Y  G  M  H  I  K  T  P  G  L  P  L  A  P  D  I  P  G  A  A  A  S  C  N  *  *  C  L  C  I  L  A  T  L  P  T  Q  M  L  E  *  P  S  T  T  C  S  R  L  C  H  G  D  L  V  D  I  T  G  D  G  G  E  Y  G  A  R  K  G  D  I  I  S  P  A  F  L  G  L  C  C  H  D  A  Y  R  L  R  S  C  V  L  S  G  A  G  T  R  L  S  C  N  *  S  L  I  I  P  R  *  N  Y  *  E  C  T  S  F  K  H  A  Q  R  *  A  *  F  K  C  W  *  Q  F  *  L  P  A  S  G  I  T  E  C  *  *  A  I  T  L  K  C  K  G  A  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="826" stop="227"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTTVVRTELPSAALLSALVQSMVDAIFFQGDLRETWGAEALKWAMECTSRHLACRSHQIYRALRPRVTNDACVSLLRCLHRCLSNPVPPVLGFVMEILLTLQVMVENMEPEKVILYPQLFWGCVAMMHTDFVHVYCQVLELVCRVIDRLSFRDRTTENVLLSSMPRDELDSNVGDNSDFQHLESRNASEPLPSNAKVPVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15539" PGL_stop="11628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15539" e_stop="15310"/>
            <exon e_start="15099" e_stop="14910"/>
            <exon e_start="14170" e_stop="14052"/>
            <exon e_start="12681" e_stop="12636"/>
            <exon e_start="11838" e_stop="11766"/>
            <exon e_start="11679" e_stop="11628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.909" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15539" e_stop="15310" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.909" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15309" i_stop="15100" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15099" e_stop="14910" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.893">
            <gDNA_intron_boundary i_start="14909" i_stop="14171" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14170" e_stop="14052" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14051" i_stop="12682" i_length="1370"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12681" e_stop="12636" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12635" i_stop="11839" i_length="797"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11838" e_stop="11766" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11765" i_stop="11680" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11679" e_stop="11628" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15539" stop="15310"/>
              <exon start="15099" stop="14910"/>
              <exon start="14170" stop="14052"/>
              <exon start="12681" stop="12636"/>
              <exon start="11838" stop="11766"/>
              <exon start="11679" stop="11628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCACTGGTCTGATTGGGTCTACAGCTAAAATCCAACTATCAGAACAAGAAAACTGCAGTAATGACCCGGCAGTGAAACGCTTCCTTTATTGTTTTTGCTACCTGAGAAAGAAATCAGTATCAGGCAGGAAGATAGAAACTGGAAAACAATATCAATGACTAAGTTTGAAGATGAAGATGGATTATTCACTCGCCAATGAATTTTCAAGTAGCAGGATTTCCGATTCCG : GTACGAAGTGGACAGTTTCTACTGGATATGAAATCTGAAGTTTGCAGTTGCATCAAAGTGGGGTAAGATTGAGAGAACAAAAAGTAAAAAAGAAATGAAGGCTGGGAGTGCAGCTAAGCTGATTGTTGACGCGTTGCTTCAGAGGTTCCTTCCGCTTGCTAGGCGTCGCATTGAAACTGCTCAAGCTCAG : GATGGACAGTACCTTCGGCCATCTGATCCAGCCTATGAGCAAGTACTGGATTCATTGGCTATGGTTGCACGCCACACACCTGTTCCTCTCCTGGAGGCCCTTCTAAGATGGAGAGAAAG : CGAATCTCCCAAAGGTGCAAATGATGCATCAACATTTCAGAGAAAG : CTTGCAGTGGAGTGCATCTTTTGTTCTGCGTGTATTCGCTTTGTGGAATGTTGTCCACAAGAAGGGCTTACAG : AGAAGCTTTGGATTGGGCTTGAGAATTTTGTATTCGATTGGCTAATAAATGC</gDNA_template>
            <first_frame> E  H  W  S  D  W  V  Y  S  *  N  P  T  I  R  T  R  K  L  Q  *  *  P  G  S  E  T  L  P  L  L  F  L  L  P  E  K  E  I  S  I  R  Q  E  D  R  N  W  K  T  I  S  M  T  K  F  E  D  E  D  G  L  F  T  R  Q  *  I  F  K  *  Q  D  F  R  F  R :   Y  E  V  D  S  F  Y  W  I  *  N  L  K  F  A  V  A  S  K  W  G  K  I  E  R  T  K  S  K  K  E  M  K  A  G  S  A  A  K  L  I  V  D  A  L  L  Q  R  F  L  P  L  A  R  R  R  I  E  T  A  Q  A  Q  :  D  G  Q  Y  L  R  P  S  D  P  A  Y  E  Q  V  L  D  S  L  A  M  V  A  R  H  T  P  V  P  L  L  E  A  L  L  R  W  R  E  S :   E  S  P  K  G  A  N  D  A  S  T  F  Q  R  K  :  L  A  V  E  C  I  F  C  S  A  C  I  R  F  V  E  C  C  P  Q  E  G  L  T   : E  K  L  W  I  G  L  E  N  F  V  F  D  W  L  I  N   </first_frame>
            <second_frame>  S  T  G  L  I  G  S  T  A  K  I  Q  L  S  E  Q  E  N  C  S  N  D  P  A  V  K  R  F  L  Y  C  F  C  Y  L  R  K  K  S  V  S  G  R  K  I  E  T  G  K  Q  Y  Q  *  L  S  L  K  M  K  M  D  Y  S  L  A  N  E  F  S  S  S  R  I  S  D  S   : G  T  K  W  T  V  S  T  G  Y  E  I  *  S  L  Q  L  H  Q  S  G  V  R  L  R  E  Q  K  V  K  K  K  *  R  L  G  V  Q  L  S  *  L  L  T  R  C  F  R  G  S  F  R  L  L  G  V  A  L  K  L  L  K  L  R :   M  D  S  T  F  G  H  L  I  Q  P  M  S  K  Y  W  I  H  W  L  W  L  H  A  T  H  L  F  L  S  W  R  P  F  *  D  G  E  K   : A  N  L  P  K  V  Q  M  M  H  Q  H  F  R  E  S :   L  Q  W  S  A  S  F  V  L  R  V  F  A  L  W  N  V  V  H  K  K  G  L  Q  :  R  S  F  G  L  G  L  R  I  L  Y  S  I  G  *  *  M  </second_frame>
            <third_frame>   A  L  V  *  L  G  L  Q  L  K  S  N  Y  Q  N  K  K  T  A  V  M  T  R  Q  *  N  A  S  F  I  V  F  A  T  *  E  R  N  Q  Y  Q  A  G  R  *  K  L  E  N  N  I  N  D  *  V  *  R  *  R  W  I  I  H  S  P  M  N  F  Q  V  A  G  F  P  I  P  :  V  R  S  G  Q  F  L  L  D  M  K  S  E  V  C  S  C  I  K  V  G  *  D  *  E  N  K  K  *  K  R  N  E  G  W  E  C  S  *  A  D  C  *  R  V  A  S  E  V  P  S  A  C  *  A  S  H  *  N  C  S  S  S   : G  W  T  V  P  S  A  I  *  S  S  L  *  A  S  T  G  F  I  G  Y  G  C  T  P  H  T  C  S  S  P  G  G  P  S  K  M  E  R  K  :  R  I  S  Q  R  C  K  *  C  I  N  I  S  E  K   : A  C  S  G  V  H  L  L  F  C  V  Y  S  L  C  G  M  L  S  T  R  R  A  Y  R :   E  A  L  D  W  A  *  E  F  C  I  R  L  A  N  K  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15068" stop="14910"/>
                    <exon start="14170" stop="14052"/>
                    <exon start="12681" stop="12636"/>
                    <exon start="11838" stop="11766"/>
                    <exon start="11679" stop="11630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLKFAVASKWGKIERTKSKKEMKAGSAAKLIVDALLQRFLPLARRRIETAQAQDGQYLRPSDPAYEQVLDSLAMVARHTPVPLLEALLRWRESESPKGANDASTFQRKLAVECIFCSACIRFVECCPQEGLTEKLWIGLENFVFDWLIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20734" PGL_stop="28384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20734" e_stop="21412"/>
            <exon e_start="21951" e_stop="22036"/>
            <exon e_start="22237" e_stop="22316"/>
            <exon e_start="22596" e_stop="22651"/>
            <exon e_start="23114" e_stop="23162"/>
            <exon e_start="23554" e_stop="23700"/>
            <exon e_start="24235" e_stop="24330"/>
            <exon e_start="24441" e_stop="24554"/>
            <exon e_start="24758" e_stop="24882"/>
            <exon e_start="25372" e_stop="25604"/>
            <exon e_start="26978" e_stop="27787"/>
            <exon e_start="27889" e_stop="28384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.736" acc_prob="0.999" e_score="0.999"/>
          <exon-intron don_prob="0.995" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.561" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="20734" e_stop="21412" e_length="679"/>
          </exon>
          <intron i_serial="1" don_prob="0.736" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21413" i_stop="21950" i_length="538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21951" e_stop="22036" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.958">
            <gDNA_intron_boundary i_start="22037" i_stop="22236" i_length="200"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22237" e_stop="22316" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.859">
            <gDNA_intron_boundary i_start="22317" i_stop="22595" i_length="279"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22596" e_stop="22651" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="22652" i_stop="23113" i_length="462"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23114" e_stop="23162" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23163" i_stop="23553" i_length="391"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23554" e_stop="23700" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.561">
            <gDNA_intron_boundary i_start="23701" i_stop="24234" i_length="534"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24235" e_stop="24330" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24331" i_stop="24440" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24441" e_stop="24554" e_length="114"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.941">
            <gDNA_intron_boundary i_start="24555" i_stop="24757" i_length="203"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24758" e_stop="24882" e_length="125"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24883" i_stop="25371" i_length="489"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="25372" e_stop="25604" e_length="233"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="25605" i_stop="26977" i_length="1373"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="26978" e_stop="27787" e_length="810"/>
          </exon>
          <intron i_serial="11" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27788" i_stop="27888" i_length="101"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="27889" e_stop="28384" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20734" stop="21412"/>
              <exon start="21951" stop="22036"/>
              <exon start="22237" stop="22316"/>
              <exon start="22596" stop="22651"/>
              <exon start="23114" stop="23162"/>
              <exon start="23554" stop="23700"/>
              <exon start="24235" stop="24330"/>
              <exon start="24441" stop="24554"/>
              <exon start="24758" stop="24882"/>
              <exon start="25372" stop="25604"/>
              <exon start="26978" stop="27787"/>
              <exon start="27889" stop="28384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGGGATGCTTTAGACCCGTATCCGGAGGGCTTCAAGATTTGGGTCCAATTTCTCCACCTCTTCTTGCTGTTCCTTCCGTCTTCCATTCTCCTCCACCTTCCTCCTTGCCACTAAGTTCATCTTCCCGTCTTAGAATGACGACTGACATGAACCCGCCGCCGCCCCGGAACCCTAAAACCGCCGCGGTTGTAACCCAGGAACCTCATGCTTCAAACTTAGATGAAGTTTCGACCTCAAACTCTACTCAAACTTCAATGAAACCCCCACTTCTAAGCAATTCGGATTCAGATTCGGATTCATCCAAACAATTCGATCAACAGAAGTCCCAATCACAACCTTTTATTTCTCAAAGTGATTCAGAACCTACTAGTGATTCAGAACCTACTAGTGTCAATGCCCAAAAAGACTCCAACTTGAGTTTAATGAAACCTCCACCTCCAAAATTCCTTAGCAAGTCGAACTCGGATAAAATTGGTGCTGAACATGAACAAAGTGCCAATTCTCAAGATGACTCCAGCTCTGTGTCCCGAAGTAACGACACCAATGAAGACAAAAAGCAAGAACAACGATCAGCTGCTTCGGTTCCGTACACGATTCCGACCTGGAGTGGGCGTCCGTGTCATCGGTTTTATCTTGAAGTGCTTAAAGATGGATCGATCATTGATAAATTTGATGT : GCACAAGAAGGGGGCGTACATGTTTGGGCGTGTTGATCTTTGTGATTTTGTTCTTGAACACCCGACCATCTCTCGCTTTCACGCTG : TTTTACAGTTCAAGGGAAACGGCAATGCTTATGTTTATGACCTTGGTAGTACACACGGGACATTTGTTAATAAAAAAGAG : GTGACAAAGAGAGTTTTTGTGGATCTCCATGTTGGTGATGTCCTTCGATTTGGACA : ATCATCACGATTATACATATTTCAAGGACCAACTGACTTGATGCCACCG : GAAGCTGACCTGAAGAGGGTAAGACAAGCGAAGATCCGGGAAGAGATGCATGACATGGAATCATCACTTCTCCGTGCAAAACTGGAAGCATCTCGTGCAGATGGGATCTCATGGGGAATGCGTGATGATGCTATTGAGGAGAACGAG : GATGAAGTTGACGAAATAACTTGGCAAACTTACAAGGGACAGCTTACAGAGAAGCAGGAAAAAACACGTGAAAAAGTTGTGAAAAGACTTGAAAAG : ATTGCTCATATGAAAAAAGAGATAGATGCTATTCGGGCCAAGGATATTTCTCAAGGTGGATTGACACAGGGACAACAAACTCAAATTGCTCGTAATGAACAGAGGATATCACAG : ATAGTGGAAGAGCTTGAAAACTTGGAAGAGACTTTAAATGAGAGTATACGGGAAAGTCTTGGTGCACGCACTGGAAGGACATCCAATGGAAAGAAAAAGGAGCCTGAAGAAGAGGAGTTTTCAAG : TGAGGAGGATGAATTCTATGATCGCACACAGAAGCCTTCAAAGAGAAAAGTTGGCGAAAATCAATCAATTGAGACAGCTGATTCTCTTCTTGATAAGAAGGATGCCATTGTCAGGGAAATGGAAGACAAGAGAAAATTATTTCTTGATGAAAAGGATGGTACAGGTCAGGAAAGTGCAGTTGAAGCTGGAGATGAACTAGATGCTTACATGTCTGGCCTTTCATCTCAGCTAG : CTCTGGAGAAGGAGGAAAAGCTTCACAAGGAACTCGCTACTCTCCAGACGGAGTTGGACAGGGTACTTTACTTGCTTAAGATTGCTGATCCTACTGGTGAGGCTGCTAAAAAGAGGGAGCTGAAAGTACAAGAACCAAAGACCAATATGACCAAAACTGTTGCAACTGCTGCCCGTCAGCAGCCTCCACCCGAGCAGAACAAAAAAGATAGAGCAGAACCTAAGGTTTTAATGGAGAAACAGGATACTATTGATGCGAACTCTTCATTCAGTCAAGAAACAAAGAAGGAGATTGTGGCTGATGCAGCTGGTGGTAAAAATGTTGTGTACATTGCTAGTAAGCCCCAATGGCTTGGTGCTGTAGATGAAAAGAAAAAACAAGAGAAAGTTATTGAACGACAGACAGAACTGCAAGACAATGATCAATTTGTTGACTACAAAGACAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG : GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAAATGTGCTTGTAATGCAATGCTTTGTGCCCGCTCCAAAAAAGCTCATAAGTGATTTTGTGTAGCATGATACAAGTCGATTTTATTTTTGTATAATGTGTTCGACAACCAATTAATCAAGA</gDNA_template>
            <first_frame> F  W  D  A  L  D  P  Y  P  E  G  F  K  I  W  V  Q  F  L  H  L  F  L  L  F  L  P  S  S  I  L  L  H  L  P  P  C  H  *  V  H  L  P  V  L  E  *  R  L  T  *  T  R  R  R  P  G  T  L  K  P  P  R  L  *  P  R  N  L  M  L  Q  T  *  M  K  F  R  P  Q  T  L  L  K  L  Q  *  N  P  H  F  *  A  I  R  I  Q  I  R  I  H  P  N  N  S  I  N  R  S  P  N  H  N  L  L  F  L  K  V  I  Q  N  L  L  V  I  Q  N  L  L  V  S  M  P  K  K  T  P  T  *  V  *  *  N  L  H  L  Q  N  S  L  A  S  R  T  R  I  K  L  V  L  N  M  N  K  V  P  I  L  K  M  T  P  A  L  C  P  E  V  T  T  P  M  K  T  K  S  K  N  N  D  Q  L  L  R  F  R  T  R  F  R  P  G  V  G  V  R  V  I  G  F  I  L  K  C  L  K  M  D  R  S  L  I  N  L  M   : C  T  R  R  G  R  T  C  L  G  V  L  I  F  V  I  L  F  L  N  T  R  P  S  L  A  F  T  L  :  F  Y  S  S  R  E  T  A  M  L  M  F  M  T  L  V  V  H  T  G  H  L  L  I  K  K  R :   *  Q  R  E  F  L  W  I  S  M  L  V  M  S  F  D  L  D   : N  H  H  D  Y  T  Y  F  K  D  Q  L  T  *  C  H  R :   K  L  T  *  R  G  *  D  K  R  R  S  G  K  R  C  M  T  W  N  H  H  F  S  V  Q  N  W  K  H  L  V  Q  M  G  S  H  G  E  C  V  M  M  L  L  R  R  T  R :   M  K  L  T  K  *  L  G  K  L  T  R  D  S  L  Q  R  S  R  K  K  H  V  K  K  L  *  K  D  L  K  R :   L  L  I  *  K  K  R  *  M  L  F  G  P  R  I  F  L  K  V  D  *  H  R  D  N  K  L  K  L  L  V  M  N  R  G  Y  H  R :   *  W  K  S  L  K  T  W  K  R  L  *  M  R  V  Y  G  K  V  L  V  H  A  L  E  G  H  P  M  E  R  K  R  S  L  K  K  R  S  F  Q   : V  R  R  M  N  S  M  I  A  H  R  S  L  Q  R  E  K  L  A  K  I  N  Q  L  R  Q  L  I  L  F  L  I  R  R  M  P  L  S  G  K  W  K  T  R  E  N  Y  F  L  M  K  R  M  V  Q  V  R  K  V  Q  L  K  L  E  M  N  *  M  L  T  C  L  A  F  H  L  S  *  :  L  W  R  R  R  K  S  F  T  R  N  S  L  L  S  R  R  S  W  T  G  Y  F  T  C  L  R  L  L  I  L  L  V  R  L  L  K  R  G  S  *  K  Y  K  N  Q  R  P  I  *  P  K  L  L  Q  L  L  P  V  S  S  L  H  P  S  R  T  K  K  I  E  Q  N  L  R  F  *  W  R  N  R  I  L  L  M  R  T  L  H  S  V  K  K  Q  R  R  R  L  W  L  M  Q  L  V  V  K  M  L  C  T  L  L  V  S  P  N  G  L  V  L  *  M  K  R  K  N  K  R  K  L  L  N  D  R  Q  N  C  K  T  M  I  N  L  L  T  T  K  T  G  I  K  F  W  *  N  Q  M  L  H  S  *  L  L  T  L  E  L  K  V  Q  L  L  D  *  *  *  G  S  A  S  K  L  R  S  L  M  L  L  K  S  N  I  L  K  N  P  L  E  L  I  Y  K  Q  K  M  R  *  L  C  C  *  N  I  L  K  D  T  I  V  L  M  M  K  W  N  P  A  E  V  M  Y  H  M  K  V  K  R  G  R  K  R  K  K  S  K  R  R  F  L  V  Q  T  D  H  H  F  *  R  V  R  R  I  T  I  L  G  F  L  L  K  :  G  N  Q  V  T  D  A  P  H  *  M  I  V  L  V  T  E  W  *  R  F  *  S  F  D  T  *  L  T  M  G  W  G  S  S  A  Y  R  L  L  M  D  H  V  T  K  *  H  L  Q  L  G  L  R  S  H  L  A  K  I  L  H  R  D  I  *  A  R  T  F  V  V  *  R  E  E  K  K  *  K  T  *  R  Y  K  S  W  I  M  I  P  F  S  H  S  C  S  C  T  F  C  *  Q  E  P  D  T  F  L  I  E  L  Y  I  E  I  D  S  E  R  I  E  I  M  R  K  C  A  C  N  A  M  L  C  A  R  S  K  K  A  H  K  *  F  C  V  A  *  Y  K  S  I  L  F  L  Y  N  V  F  D  N  Q  L  I  K  </first_frame>
            <second_frame>  F  G  M  L  *  T  R  I  R  R  A  S  R  F  G  S  N  F  S  T  S  S  C  C  S  F  R  L  P  F  S  S  T  F  L  L  A  T  K  F  I  F  P  S  *  N  D  D  *  H  E  P  A  A  A  P  E  P  *  N  R  R  G  C  N  P  G  T  S  C  F  K  L  R  *  S  F  D  L  K  L  Y  S  N  F  N  E  T  P  T  S  K  Q  F  G  F  R  F  G  F  I  Q  T  I  R  S  T  E  V  P  I  T  T  F  Y  F  S  K  *  F  R  T  Y  *  *  F  R  T  Y  *  C  Q  C  P  K  R  L  Q  L  E  F  N  E  T  S  T  S  K  I  P  *  Q  V  E  L  G  *  N  W  C  *  T  *  T  K  C  Q  F  S  R  *  L  Q  L  C  V  P  K  *  R  H  Q  *  R  Q  K  A  R  T  T  I  S  C  F  G  S  V  H  D  S  D  L  E  W  A  S  V  S  S  V  L  S  *  S  A  *  R  W  I  D  H  *  *  I  *  C  :  A  Q  E  G  G  V  H  V  W  A  C  *  S  L  *  F  C  S  *  T  P  D  H  L  S  L  S  R  C :   F  T  V  Q  G  K  R  Q  C  L  C  L  *  P  W  *  Y  T  R  D  I  C  *  *  K  R   : G  D  K  E  S  F  C  G  S  P  C  W  *  C  P  S  I  W  T  :  I  I  T  I  I  H  I  S  R  T  N  *  L  D  A  T   : G  S  *  P  E  E  G  K  T  S  E  D  P  G  R  D  A  *  H  G  I  I  T  S  P  C  K  T  G  S  I  S  C  R  W  D  L  M  G  N  A  *  *  C  Y  *  G  E  R   : G  *  S  *  R  N  N  L  A  N  L  Q  G  T  A  Y  R  E  A  G  K  N  T  *  K  S  C  E  K  T  *  K   : D  C  S  Y  E  K  R  D  R  C  Y  S  G  Q  G  Y  F  S  R  W  I  D  T  G  T  T  N  S  N  C  S  *  *  T  E  D  I  T   : D  S  G  R  A  *  K  L  G  R  D  F  K  *  E  Y  T  G  K  S  W  C  T  H  W  K  D  I  Q  W  K  E  K  G  A  *  R  R  G  V  F  K  :  *  G  G  *  I  L  *  S  H  T  E  A  F  K  E  K  S  W  R  K  S  I  N  *  D  S  *  F  S  S  *  *  E  G  C  H  C  Q  G  N  G  R  Q  E  K  I  I  S  *  *  K  G  W  Y  R  S  G  K  C  S  *  S  W  R  *  T  R  C  L  H  V  W  P  F  I  S  A  S :   S  G  E  G  G  K  A  S  Q  G  T  R  Y  S  P  D  G  V  G  Q  G  T  L  L  A  *  D  C  *  S  Y  W  *  G  C  *  K  E  G  A  E  S  T  R  T  K  D  Q  Y  D  Q  N  C  C  N  C  C  P  S  A  A  S  T  R  A  E  Q  K  R  *  S  R  T  *  G  F  N  G  E  T  G  Y  Y  *  C  E  L  F  I  Q  S  R  N  K  E  G  D  C  G  *  C  S  W  W  *  K  C  C  V  H  C  *  *  A  P  M  A  W  C  C  R  *  K  E  K  T  R  E  S  Y  *  T  T  D  R  T  A  R  Q  *  S  I  C  *  L  Q  R  Q  E  *  S  F  G  K  T  R  C  Y  T  V  D  C  *  L  W  N  *  K  C  S  S  W  T  N  N  K  E  A  Q  A  S  *  E  V  *  C  Y  *  S  Q  T  F  S  R  I  H  W  S  *  F  T  S  R  R  C  G  S  S  A  V  E  T  F  S  K  I  P  *  Y  *  *  *  S  G  I  Q  R  R  *  C  I  T  *  K  S  N  E  E  G  K  E  K  K  A  K  E  G  S  W  S  R  Q  T  I  I  S  E  E  *  E  G  L  Q  F  L  G  S  S  *  R :   A  I  R  *  R  T  H  L  T  E  *  S  S  W  L  L  N  G  R  D  F  D  R  L  T  H  N  *  L  W  D  G  V  A  R  L  T  D  C  *  W  I  M  *  L  N  S  I  Y  S  L  V  *  D  L  I  L  R  K  S  F  T  G  T  S  E  R  E  H  L  L  F  E  E  K  K  R  N  R  K  R  E  D  T  R  A  G  L  *  S  H  S  P  T  L  A  P  V  P  S  V  N  K  N  L  T  P  S  *  L  N  C  I  *  R  L  T  R  K  G  *  R  *  *  E  N  V  L  V  M  Q  C  F  V  P  A  P  K  K  L  I  S  D  F  V  *  H  D  T  S  R  F  Y  F  C  I  M  C  S  T  T  N  *  S  R </second_frame>
            <third_frame>   L  G  C  F  R  P  V  S  G  G  L  Q  D  L  G  P  I  S  P  P  L  L  A  V  P  S  V  F  H  S  P  P  P  S  S  L  P  L  S  S  S  S  R  L  R  M  T  T  D  M  N  P  P  P  P  R  N  P  K  T  A  A  V  V  T  Q  E  P  H  A  S  N  L  D  E  V  S  T  S  N  S  T  Q  T  S  M  K  P  P  L  L  S  N  S  D  S  D  S  D  S  S  K  Q  F  D  Q  Q  K  S  Q  S  Q  P  F  I  S  Q  S  D  S  E  P  T  S  D  S  E  P  T  S  V  N  A  Q  K  D  S  N  L  S  L  M  K  P  P  P  P  K  F  L  S  K  S  N  S  D  K  I  G  A  E  H  E  Q  S  A  N  S  Q  D  D  S  S  S  V  S  R  S  N  D  T  N  E  D  K  K  Q  E  Q  R  S  A  A  S  V  P  Y  T  I  P  T  W  S  G  R  P  C  H  R  F  Y  L  E  V  L  K  D  G  S  I  I  D  K  F  D  V :   H  K  K  G  A  Y  M  F  G  R  V  D  L  C  D  F  V  L  E  H  P  T  I  S  R  F  H  A   : V  L  Q  F  K  G  N  G  N  A  Y  V  Y  D  L  G  S  T  H  G  T  F  V  N  K  K  E  :  V  T  K  R  V  F  V  D  L  H  V  G  D  V  L  R  F  G  Q :   S  S  R  L  Y  I  F  Q  G  P  T  D  L  M  P  P  :  E  A  D  L  K  R  V  R  Q  A  K  I  R  E  E  M  H  D  M  E  S  S  L  L  R  A  K  L  E  A  S  R  A  D  G  I  S  W  G  M  R  D  D  A  I  E  E  N  E  :  D  E  V  D  E  I  T  W  Q  T  Y  K  G  Q  L  T  E  K  Q  E  K  T  R  E  K  V  V  K  R  L  E  K  :  I  A  H  M  K  K  E  I  D  A  I  R  A  K  D  I  S  Q  G  G  L  T  Q  G  Q  Q  T  Q  I  A  R  N  E  Q  R  I  S  Q  :  I  V  E  E  L  E  N  L  E  E  T  L  N  E  S  I  R  E  S  L  G  A  R  T  G  R  T  S  N  G  K  K  K  E  P  E  E  E  E  F  S  S :   E  E  D  E  F  Y  D  R  T  Q  K  P  S  K  R  K  V  G  E  N  Q  S  I  E  T  A  D  S  L  L  D  K  K  D  A  I  V  R  E  M  E  D  K  R  K  L  F  L  D  E  K  D  G  T  G  Q  E  S  A  V  E  A  G  D  E  L  D  A  Y  M  S  G  L  S  S  Q  L   : A  L  E  K  E  E  K  L  H  K  E  L  A  T  L  Q  T  E  L  D  R  V  L  Y  L  L  K  I  A  D  P  T  G  E  A  A  K  K  R  E  L  K  V  Q  E  P  K  T  N  M  T  K  T  V  A  T  A  A  R  Q  Q  P  P  P  E  Q  N  K  K  D  R  A  E  P  K  V  L  M  E  K  Q  D  T  I  D  A  N  S  S  F  S  Q  E  T  K  K  E  I  V  A  D  A  A  G  G  K  N  V  V  Y  I  A  S  K  P  Q  W  L  G  A  V  D  E  K  K  K  Q  E  K  V  I  E  R  Q  T  E  L  Q  D  N  D  Q  F  V  D  Y  K  D  R  N  K  V  L  V  K  P  D  A  T  Q  L  T  A  D  S  G  I  E  S  A  A  P  G  L  I  I  R  K  R  K  Q  V  E  K  S  D  V  T  E  V  K  H  S  Q  E  S  T  G  A  D  L  Q  A  E  D  A  V  A  L  L  L  K  H  S  Q  R  Y  H  S  T  D  D  E  V  E  S  S  G  G  D  V  S  H  E  S  Q  T  R  K  E  K  K  K  K  Q  K  K  V  L  G  P  D  R  P  S  F  L  K  S  E  K  D  Y  N  S  W  V  P  P  E   : G  Q  S  G  D  G  R  T  S  L  N  D  R  L  G  Y  *  M  V  E  I  L  I  V  *  H  I  T  N  Y  G  M  G  *  L  G  L  Q  I  A  D  G  S  C  N  *  I  A  F  T  A  W  F  E  I  S  S  C  E  N  P  S  Q  G  H  L  S  E  N  I  C  C  L  K  R  R  K  E  I  E  N  V  K  I  Q  E  L  D  Y  D  P  I  L  P  L  L  L  L  Y  L  L  L  T  R  T  *  H  L  P  D  *  I  V  Y  R  D  *  L  G  K  D  R  D  N  E  K  M  C  L  *  C  N  A  L  C  P  L  Q  K  S  S  *  V  I  L  C  S  M  I  Q  V  D  F  I  F  V  *  C  V  R  Q  P  I  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20736" stop="21412"/>
                    <exon start="21951" stop="22036"/>
                    <exon start="22237" stop="22316"/>
                    <exon start="22596" stop="22651"/>
                    <exon start="23114" stop="23162"/>
                    <exon start="23554" stop="23700"/>
                    <exon start="24235" stop="24330"/>
                    <exon start="24441" stop="24554"/>
                    <exon start="24758" stop="24882"/>
                    <exon start="25372" stop="25604"/>
                    <exon start="26978" stop="27787"/>
                    <exon start="27889" stop="27938"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2520</number_coding_nucleotides>
                  <number_encoded_amino_acids>840</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGCFRPVSGGLQDLGPISPPLLAVPSVFHSPPPSSLPLSSSSRLRMTTDMNPPPPRNPKTAAVVTQEPHASNLDEVSTSNSTQTSMKPPLLSNSDSDSDSSKQFDQQKSQSQPFISQSDSEPTSDSEPTSVNAQKDSNLSLMKPPPPKFLSKSNSDKIGAEHEQSANSQDDSSSVSRSNDTNEDKKQEQRSAASVPYTIPTWSGRPCHRFYLEVLKDGSIIDKFDVHKKGAYMFGRVDLCDFVLEHPTISRFHAVLQFKGNGNAYVYDLGSTHGTFVNKKEVTKRVFVDLHVGDVLRFGQSSRLYIFQGPTDLMPPEADLKRVRQAKIREEMHDMESSLLRAKLEASRADGISWGMRDDAIEENEDEVDEITWQTYKGQLTEKQEKTREKVVKRLEKIAHMKKEIDAIRAKDISQGGLTQGQQTQIARNEQRISQIVEELENLEETLNESIRESLGARTGRTSNGKKKEPEEEEFSSEEDEFYDRTQKPSKRKVGENQSIETADSLLDKKDAIVREMEDKRKLFLDEKDGTGQESAVEAGDELDAYMSGLSSQLALEKEEKLHKELATLQTELDRVLYLLKIADPTGEAAKKRELKVQEPKTNMTKTVATAARQQPPPEQNKKDRAEPKVLMEKQDTIDANSSFSQETKKEIVADAAGGKNVVYIASKPQWLGAVDEKKKQEKVIERQTELQDNDQFVDYKDRNKVLVKPDATQLTADSGIESAAPGLIIRKRKQVEKSDVTEVKHSQESTGADLQAEDAVALLLKHSQRYHSTDDEVESSGGDVSHESQTRKEKKKKQKKVLGPDRPSFLKSEKDYNSWVPPEGQSGDGRTSLNDRLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30472" PGL_stop="29126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30472" e_stop="30059"/>
            <exon e_start="29940" e_stop="29881"/>
            <exon e_start="29790" e_stop="29757"/>
            <exon e_start="29630" e_stop="29126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30472" e_stop="30059" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29940" e_stop="29881" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29790" e_stop="29757" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29630" e_stop="29126" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30472" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG : GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG : TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG : ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGC</gDNA_template>
            <first_frame> L  D  Y  A  M  Y  G  F  *  T  E  L  *  E  K  N  *  L  E  T  N  K  K  G  K  K  L  L  T  L  C  E  I  E  I  K  C  S  G  *  *  F  G  P  K  I  L  M  Q  L  I  D  F  G  P  N  Y  R  C  C  V  *  I  Y  S  I  L  H  R  G  Y  C  W  S  V  T  T  A  S  A  R  L  K  R  L  T  T  *  E  D  P  S  L  *  I  E  V  D  S  L  K  A  L  H  T  S  L  P  L  L  A  S  H  K  I  T  T  M  A  G  K  M  S  I  V  L  F  V  L  L  V  V  F  L  T  Q  N  Q  :  V  S  R  A  N  I  M  R  D  E  Q  Q  Q  Q  Q  R  N  N  Q  L  :  Y  G  V  S  E  G  R  L  H  P  Q   : D  C  Q  P  K  C  T  Y  R  C  S  K  T  S  Y  K  K  P  C  M  F  F  C  Q  K  C  C  A  K  C  L  C  V  P  A  G  T  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  K  R  G  G  P  K  C  P  *  S  S  I  L  Y  *  N  V  T  A  D  T  Q  L  L  S  N  L  V  V  L  I  N  *  S  T  L  V  V  S  S  G  V  L  A  S  N  V  R  S  Q  L  Y  R  R  R  L  G  *  L  Q  V  Q  *  H  G  Y  D  Y  A  A  F  F  V  R  L  I  L  Y  Y  Y  Y  D  Y  I  L  S  D  I  Y  W  C  T  I  R  I  I  E  C  S  S  H  L  I  Q  G  Q  L  G  V  *  M  G  Y  Y  T  K   </first_frame>
            <second_frame>  *  I  M  L  C  M  A  F  E  L  N  Y  E  K  K  I  D  L  K  R  T  K  R  A  K  N  F  L  H  Y  A  K  L  K  *  N  A  P  V  N  S  L  V  Q  K  Y  *  C  S  *  *  I  L  D  Q  T  I  D  A  V  Y  R  F  I  Q  F  C  I  G  D  T  V  G  V  *  Q  Q  Q  V  L  G  *  R  D  *  P  L  E  K  I  P  L  Y  K  *  K  S  I  L  S  K  L  Y  T  L  H  F  L  S  *  L  H  T  K  L  L  Q  W  L  G  K  *  A  L  S  C  L  F  F  W  W  F  S  *  L  K  I  R :   F  Q  G  P  T  L  C  V  M  S  S  S  N  N  R  E  I  T  N  C :   M  V  L  V  R  E  D  S  I  L  K  :  I  V  N  Q  N  A  R  T  G  V  Q  R  H  R  I  R  S  R  V  C  F  S  A  R  N  A  V  Q  S  V  C  V  F  L  L  V  P  M  A  I  S  K  V  A  L  A  T  I  T  G  R  P  K  E  V  A  Q  S  A  H  D  H  P  Y  C  I  K  M  *  L  Q  T  P  N  F  C  Q  I  *  *  Y  *  L  I  N  Q  H  L  L  S  Q  V  V  Y  *  L  V  M  L  G  P  N  Y  I  E  E  D  W  A  S  Y  K  Y  N  S  M  V  M  I  M  Q  L  F  L  *  D  L  F  Y  I  I  I  M  I  I  S  *  V  I  F  I  G  V  P  *  E  L  *  N  V  Q  V  I  *  S  K  A  N  L  A  F  E  W  A  I  I  L  K  </second_frame>
            <third_frame>   R  L  C  Y  V  W  L  L  N  *  T  M  R  K  K  L  T  *  N  E  Q  K  G  Q  K  T  S  Y  T  M  R  N  *  N  K  M  L  R  L  I  V  W  S  K  N  I  D  A  V  N  R  F  W  T  K  L  S  M  L  C  I  D  L  F  N  F  A  *  G  I  L  L  E  C  D  N  S  K  C  *  A  K  E  I  N  H  L  R  R  S  L  S  I  N  R  S  R  F  S  Q  S  S  T  H  F  T  S  S  L  S  F  T  Q  N  Y  Y  N  G  W  E  N  E  H  C  L  V  C  S  F  G  G  F  P  D  S  K  S   : G  F  K  G  Q  H  Y  A  *  *  A  A  A  T  T  E  K  *  P  T   : V  W  C  *  *  G  K  T  P  S  S  R :   L  S  T  K  M  H  V  P  V  F  K  D  I  V  *  E  A  V  Y  V  F  L  P  E  M  L  C  K  V  F  V  C  S  C  W  Y  L  W  Q  *  A  K  L  P  L  L  Q  *  L  E  D  Q  K  R  W  P  K  V  P  M  I  I  H  I  V  L  K  C  D  C  R  H  P  T  S  V  K  S  S  S  I  N  *  L  I  N  T  C  C  L  K  W  C  I  S  *  *  C  *  V  P  I  I  *  K  K  I  G  L  A  T  S  T  I  A  W  L  *  L  C  S  F  F  C  E  T  Y  F  I  L  L  L  *  L  Y  L  K  *  Y  L  L  V  Y  H  K  N  Y  R  M  F  K  S  S  N  P  R  P  T  W  R  L  N  G  L  L  Y  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30190" stop="30059"/>
                    <exon start="29940" stop="29881"/>
                    <exon start="29790" stop="29757"/>
                    <exon start="29630" stop="29449"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEVDSLKALHTSLPLLASHKITTMAGKMSIVLFVLLVVFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 9520 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2380 bytes was the average size of a spliced alignment
$ 9664 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2416 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:03:54
-->
