<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:01:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366429" ref_strand="+" ref_description="SGN-E366429 [cLPT-1-F8]">
      <seq>gacactacagttgtcagaacagaactgccaagtgcagcactcttatctgctttagtgcagagcatggtggatgctatctttttccaaggagatctacgggaaacttggggagcagaggctcttaaatgggctatggaatgcacatcaagacacctggcctgccgctcgcaccagatataccgggcactgcggcctcgtgtaactaatgatgcttgtgtatccttgctacgttgccttcacagatgcttgagtaacccagtaccacctgttctaggctttgtcatggagatcttgttgacattacaggtaatggtggagaatatggagccagaaaaggtgatattatatccccagcttttctggggttgtgttgccatgatgcatacagacttcgttcatgtgtattgtcaggtgctggaactcgtttgtcgtgtaattgatcgcttatcgttccgagatagaactactgagaatgtgcttctctcaagcatgcccagagatgagcttgattcaaatgttggtgacaattctgacttccagcgtctggaatcacggaacgttagtgagccattaccctcaaatgcaaaggtgccagtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="1126" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="826" g_stop="226" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E366429" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="826" e_stop="226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTACAGTTGTCAGAACAGAACTGCCAAGTGCAGCACTCTTATCTGCTTTAGTGCAGAGCATGGTGGATGCTATCTTTTTCCAAGGAGATCTACGGGAAACTTGGGGAGCAGAGGCTCTTAAATGGGCTATGGAATGCACATCAAGACACCTGGCCTGCCGCTCGCACCAGATATACCGGGCGCTGCGGCCTCGTGTAACTAATGATGCTTGTGTATCCTTGCTACGTTGCCTACACAGATGCTTGAGTAACCCAGTACCACCTGTTCTAGGCTTTGTCATGGAGATCTTGTTGACATTACAGGTGATGGTGGAGAATATGGAGCCAGAAAAGGTGATATTATATCCCCAGCTTTTCTGGGGTTGTGTTGCCATGATGCATACAGACTTCGTTCATGTGTATTGTCAGGTGCTGGAACTCGTTTGTCGTGTAATTGATCGCTTATCATTCCGAGATAGAACTACTGAGAATGTACTTCTTTCAAGCATGCCCAGAGATGAGCTTGATTCAAATGTTGGTGACAATTCTGACTTCCAGCATCTGGAATCACGGAATGCTAGTGAGCCATTACCCTCAAATGCAAAGGTGCCAGTCTTTG</genome_strand>
        <mrna_strand>GACACTACAGTTGTCAGAACAGAACTGCCAAGTGCAGCACTCTTATCTGCTTTAGTGCAGAGCATGGTGGATGCTATCTTTTTCCAAGGAGATCTACGGGAAACTTGGGGAGCAGAGGCTCTTAAATGGGCTATGGAATGCACATCAAGACACCTGGCCTGCCGCTCGCACCAGATATACCGGGCACTGCGGCCTCGTGTAACTAATGATGCTTGTGTATCCTTGCTACGTTGCCTTCACAGATGCTTGAGTAACCCAGTACCACCTGTTCTAGGCTTTGTCATGGAGATCTTGTTGACATTACAGGTAATGGTGGAGAATATGGAGCCAGAAAAGGTGATATTATATCCCCAGCTTTTCTGGGGTTGTGTTGCCATGATGCATACAGACTTCGTTCATGTGTATTGTCAGGTGCTGGAACTCGTTTGTCGTGTAATTGATCGCTTATCGTTCCGAGATAGAACTACTGAGAATGTGCTTCTCTCAAGCATGCCCAGAGATGAGCTTGATTCAAATGTTGGTGACAATTCTGACTTCCAGCGTCTGGAATCACGGAACGTTAGTGAGCCATTACCCTCAAATGCAAAGGTGCCAGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326880" ref_strand="+" ref_description="SGN-E326880 [cTOC-25-K16]">
      <seq>gcactggtctgattgggtctacagctaaaatccaactatcagaacaagaaaactgcagtaatgacccggcagtgaaacgcttcctttattgtttttgctacctgagaaagaaatcagtatcaggcaggaagatagaaactggaaaacaatatcaatgactaagtttgaagatgaagatggattattcactcgccaatgaattttcaagtagcaggatttccgattccggtacgaagtggacagtttctactggatatgaaatctgaagtttgcagttgcatcaaagtggggtaagattgagagaacaaaaagtaaaaaagaaatgaaggctgggagtgcagctaagctgattgttgacgcgttgcttcagaggttccttccgcttgctaggcgtcgcattgaaactgctcaagctcaggatggacagtaccttcggccatctgatccagcctatgagcaagtactggattcattggctatggttgcacgccacacacctgttcctctcctggaggcccttctaagatggagagaaagcgaatctcccaaaggtgcaaatgatgcatcaacatttcagagaaagcttgcagtggagtgcatcttttgttctgcgtgtattcgctttgtggaatgttgtccacaagaagggcttacagagaagctttggattgggcttgagaattttgtattcgattggctaataaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="15837" stop="11328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15537" g_stop="15310" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15309" i_stop="15100" i_length="210">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15099" g_stop="14910" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="418" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14909" i_stop="14171" i_length="739">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14170" g_stop="14052" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="537" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14051" i_stop="12682" i_length="1370">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12681" g_stop="12636" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="583" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12635" i_stop="11839" i_length="797">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11838" g_stop="11766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="656" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11765" i_stop="11680" i_length="86">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11679" g_stop="11628" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="708" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E326880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15537" e_stop="15310"/>
          <exon e_start="15099" e_stop="14910"/>
          <exon e_start="14170" e_stop="14052"/>
          <exon e_start="12681" e_stop="12636"/>
          <exon e_start="11838" e_stop="11766"/>
          <exon e_start="11679" e_stop="11628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTGGTCTGATTGGGTCTACAGCTAAAATCCAACTATCAGAACAAGAAAACTGCAGTAATGACCCGGCAGTGAAACGCTTCCTTTATTGTTTTTGCTACCTGAGAAAGAAATCAGTATCAGGCAGGAAGATAGAAACTGGAAAACAATATCAATGACTAAGTTTGAAGATGAAGATGGATTATTCACTCGCCAATGAATTTTCAAGTAGCAGGATTTCCGATTCCGGTACCGTCTCTTTTCGGTTAGTACTTATCATTTTCCACTTCTCTTTGTAACAAATTGGCTGAATTTAGCATGATAACAGTATCTGGATGAACCCTAATTTATACTTTACATTTCGAATTCACGTACTCGACTCAAATTAGCTTGGGATCGAGGGGTAGTTGGTTGAGTCAAATTTCGGAGTCCTTCAATCTGAATTGGGATCACGCGCAGGTACGAAGTGGACAGTTTCTACTGGATATGAAATCTGAAGTTTGCAGTTGCATCAAAGTGGGGTAAGATTGAGAGAACAAAAAGTAAAAAAGAAATGAAGGCTGGGAGTGCAGCTAAGCTGATTGTTGACGCGTTGCTTCAGAGGTTCCTTCCGCTTGCTAGGCGTCGCATTGAAACTGCTCAAGCTCAGGTACTCTTTAACCAAAAGTTTTCTCTATTTTCATGTGCTGATACCATTTTGGGGATTATTTGTATGTTTGTGATGTACTATGATTATGATTCTTAACTTCATGTCAAGAAAGATATTTGCAAAATGCTTGTCATATTAGTCGGCAGCATAGTTCCTGTAACACTAAGAGAAAGTTCAAGATGGATTCTGGAGTCATATTCTTCCATTTATGCTGGTTTAGACAAAAGATAAACTTCTCCGAGAGTAGTTAATGCAAGCGCGTTAGAATTTGTTCTGAGGAATACCCTTTTATGCTGCCTCTAGCTCTCAAGTGTGGAAAGGAGAACTATGGTATGCTTTTACTAAGGGGGAATATATGGAGGAAAATAAACAAAGAGACTAAGTGGATTCAACATCTACTATATATACATAAAAAGTATTTTTGGCCTTATATATATAGTATTATTTTTTGATGATGAACCCACTTACGGTACCCTGGCTCCGCCAAGTTGGTCCTCTAACCCCACAAAGGGAAAATGACAAGCATGGTCTACTTAACATGAGGTGGAGCGGAATATTTTCGTTGTTTACTTTACATCCATTAGTTTGATTCTGGATTATGCAAAACAAGTTGTTTTATTGCTTAATTTTCTTTTTTAAATTATTATTTTAATTTTTTCCGGATAGGTTTTTGTGATTAATTTCCTTTTGACTTGGATTCTTCAACTTTATCTAAAATTTCTCACTTGACGAAGTACAGGATGGACAGTACCTTCGGCCATCTGATCCAGCCTATGAGCAAGTACTGGATTCATTGGCTATGGTTGCACGCCACACACCTGTTCCTCTCCTGGAGGCCCTTCTAAGATGGAGAGAAAGGTGCACATTTTCAGTTACAATTTATCCTAATCATGGTACATGGTTTTCATTTATGTGTTAAGTCAAAGTGTAGTTTTCATCATTCCGCTGCCAATTAATGCAAGTTCATTTTGGTGAAAGAAAATTTTTCCTTCGTAGTTCATACAGTTGTGCTAGCAAATCCATTTGGTAAATATATATTGCACAGTTGTTCCCCTTACATGTGCTGTATGAGAATTCACATACATGATAAACCATGGTAAATTATTCAGTAGCTTGTTAATTACTCCTTACTTCACAATATAAACATTTCTTTTAATTTTGGGAAATCTCAAATGTTTGCCATTATTCCAATCCCAATCATAATACTACTATTTTCAGCAATTCAAATTCTTTTAGCTATTAACATTTAAGATTGGGATAATGCCCAAGTACCCCCTAAACCTATGCCCGAAATCTCAGAGACACACTTATACTATATTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCATTATCTTGTGGTCCCAACGATGGTTGACTTTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGGGGGTAATAAGACTTTAGAATAGTATAAGTGTGTCTCTGGGATTTAGGGCATAGGTTGAGGGGGTACTTGTGCATTTTCCCTTTAAGATTTGATATGATCTTTTTTCTTCCGAGCTAGTTTTCAACCATTACAGCAACAACAAAATACCCAGTTTTCAACCATTATTTTACTATATTCATCCACTAACACTTATATAAAAATAAACTAAATTAACGTCTTAAACTGCGTGTCCAGGTAAAATGGGATGGCGGAATAATAGTTGTAGTTTCATTTCGTTCTAGTTAATCTGGGACTGGATAAGTATGTTACAGTTTTGAAAAAGTAGAACTAGGATAAGGGAAAATAGAGGAGATCAGTTGCCACGCGGGCAATTGCATTTTCTGCTACTGTTCTTGAATATGGACGACCTCTAATAGCTGGGGCCTTGACTTACCATTTTTGGCTTGAGGTGACCATGGGGAGATTTTACACGTGATAAGTGTTTTATTGTTCAATAAAGAAACCTTGATCTTTCTGAAATTATCACTCTTATAGTCTTCTTTTATGAAGTAGTGCAGTTCATTGATTGAGATCTAGGGGACGCATAGGAAGTACAAATCTATCATGAAAATCGCCATGCCATCAATCTATTTTTATTTCTGATGAAGCTTTGTTAATGTGATGGGATTACACTACAATAATGTGTATACTACAGTAGAGAGATTTTTCAATGCTTTGAATCTGATGTACTATGGTTGGTTGCAGCGAATCTCCCAAAGGTGCAAATGATGCATCAACATTTCAGAGAAAGGTTTGTTAATCTACCAACTCTCTTGTCTGTGACTCCTTTTCGAAAAGGAAGTCATGAGTCCTTCCCTCATTCACATCTTTAGCATGGAATTTGCTATGAGGTTGTTCCTCTGCACTTCCATTTTCTGGTTATTGAACAAATTCATTGAAAATGACTTATCACACAATCTATGAAATAGCAAAAGAATGGAACTATGGGAGTCACTTCTTTTAAATCACACATCTGGTAGGCTGAAATTACAACACCGCTATGCAGCTCAAAATATTTCCCGGCAAAATAGCCGTCCTCTCACTTTAAGAGAAACTTAACTTTCCAAGTGTAGAACCTCATGTGTTTGCTTCCTTTTGGGACTCGATAAAACTGGAGAACCTCATAAAGTTGACCTTAATGTGTATATATATATAATATATAAAGAGAGAACCTCATGCAGTTGTCTGCAGGAAGTTGGAAGAAACCAGAAAGGAAGAGATTGTTTTTATAATATAAGAAAATAAACCCAAAACTGTTCTAACTGAAGGATTAAAAGAAGTAGCCATTATTACCTCAACTGGCAGAGTAATAAGCATGAAGGATTACTGCTGTACATTTAGGCCACTATTCATTTCGTGACTAATGATACCAAAGTGGTATTATATCATAGGTACTTTACATGCATATTCTCCTTTTGTGAAGTATCTGATTAAGTTCTGTATGATTTAGCAACTTAAGTATCTTAGTTGAAGCTCGTGAGGAAGTTCTTTCATGGTTCTTAAATTTCTCAAATCCTTATAAAAAAAGTAAGTTCTTCCCTGGTTCAGCTTGCAGTGGAGTGCATCTTTTGTTCTGCGTGTATTCGCTTTGTGGAATGTTGTCCACAAGAAGGGCTTACAGGTAGATTTACAGATTCAACAAGTCTACCTTTCTCTAGGAAGCTAATCCACTGCTAGTTGAGTAAAATGTGCCTCCTTGAACTGCAGAGAAGCTTTGGATTGGGCTTGAGAATTTTGTATTCGATTGGCTAATAAATGC</genome_strand>
        <mrna_strand>GCACTGGTCTGATTGGGTCTACAGCTAAAATCCAACTATCAGAACAAGAAAACTGCAGTAATGACCCGGCAGTGAAACGCTTCCTTTATTGTTTTTGCTACCTGAGAAAGAAATCAGTATCAGGCAGGAAGATAGAAACTGGAAAACAATATCAATGACTAAGTTTGAAGATGAAGATGGATTATTCACTCGCCAATGAATTTTCAAGTAGCAGGATTTCCGATTCCG..................................................................................................................................................................................................................GTACGAAGTGGACAGTTTCTACTGGATATGAAATCTGAAGTTTGCAGTTGCATCAAAGTGGGGTAAGATTGAGAGAACAAAAAGTAAAAAAGAAATGAAGGCTGGGAGTGCAGCTAAGCTGATTGTTGACGCGTTGCTTCAGAGGTTCCTTCCGCTTGCTAGGCGTCGCATTGAAACTGCTCAAGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACAGTACCTTCGGCCATCTGATCCAGCCTATGAGCAAGTACTGGATTCATTGGCTATGGTTGCACGCCACACACCTGTTCCTCTCCTGGAGGCCCTTCTAAGATGGAGAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCTCCCAAAGGTGCAAATGATGCATCAACATTTCAGAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGTGGAGTGCATCTTTTGTTCTGCGTGTATTCGCTTTGTGGAATGTTGTCCACAAGAAGGGCTTACAG......................................................................................AGAAGCTTTGGATTGGGCTTGAGAATTTTGTATTCGATTGGCTAATAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551119" ref_strand="+" ref_description="SGN-E551119 [TUS-55-F22]">
      <seq>ttcaagataaaaccgatgacacggacgcccactccaggtcggaatcgtgtacggaaccgaagcagctgatcgttgttcttgctttttgtcttcattggtgtcgttacttcgggacacagagctggagtcatcttgagaattggcactttgttcatgttcagcaccaattttatccgagttcgacttgctaaggaattttggaggtggaggtttcattaaactcaagttggagtctttttgggcattgacactagtaggttctgaatcactagtaggttctgaatcactttgagaaataaaaggttgtgattgggacttctgttgatcgaattgtttggatgaatccgaatctgaatccgaattgcttagaagtgggggtttcattgaagtttgagtagagtttgaggtcgaaacttcatctaagtttgaagcatgaggttcctgggttacaaccgcggcggttttagggttccggggcggcggcgggttcatgtcagtcgtcattctaagacgggaagatgaacttagtggcaaggaggaaggtggaggagaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="21674" stop="20518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21374" g_stop="20818" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E551119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21374" e_stop="20818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGATAAAACCGATGACACGGACGCCCACTCCAGGTCGGAATCGTGTACGGAACCGAAGCAGCTGATCGTTGTTCTTGCTTTTTGTCTTCATTGGTGTCGTTACTTCGGGACACAGAGCTGGAGTCATCTTGAGAATTGGCACTTTGTTCATGTTCAGCACCAATTTTATCCGAGTTCGACTTGCTAAGGAATTTTGGAGGTGGAGGTTTCATTAAACTCAAGTTGGAGTCTTTTTGGGCATTGACACTAGTAGGTTCTGAATCACTAGTAGGTTCTGAATCACTTTGAGAAATAAAAGGTTGTGATTGGGACTTCTGTTGATCGAATTGTTTGGATGAATCCGAATCTGAATCCGAATTGCTTAGAAGTGGGGGTTTCATTGAAGTTTGAGTAGAGTTTGAGGTCGAAACTTCATCTAAGTTTGAAGCATGAGGTTCCTGGGTTACAACCGCGGCGGTTTTAGGGTTCCGGGGCGGCGGCGGGTTCATGTCAGTCGTCATTCTAAGACGGGAAGATGAACTTAGTGGCAAGGAGGAAGGTGGAGGAGAATGGA</genome_strand>
        <mrna_strand>TTCAAGATAAAACCGATGACACGGACGCCCACTCCAGGTCGGAATCGTGTACGGAACCGAAGCAGCTGATCGTTGTTCTTGCTTTTTGTCTTCATTGGTGTCGTTACTTCGGGACACAGAGCTGGAGTCATCTTGAGAATTGGCACTTTGTTCATGTTCAGCACCAATTTTATCCGAGTTCGACTTGCTAAGGAATTTTGGAGGTGGAGGTTTCATTAAACTCAAGTTGGAGTCTTTTTGGGCATTGACACTAGTAGGTTCTGAATCACTAGTAGGTTCTGAATCACTTTGAGAAATAAAAGGTTGTGATTGGGACTTCTGTTGATCGAATTGTTTGGATGAATCCGAATCTGAATCCGAATTGCTTAGAAGTGGGGGTTTCATTGAAGTTTGAGTAGAGTTTGAGGTCGAAACTTCATCTAAGTTTGAAGCATGAGGTTCCTGGGTTACAACCGCGGCGGTTTTAGGGTTCCGGGGCGGCGGCGGGTTCATGTCAGTCGTCATTCTAAGACGGGAAGATGAACTTAGTGGCAAGGAGGAAGGTGGAGGAGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688922" ref_strand="+" ref_description="SGN-E688922 [t3_tus_55_F22]">
      <seq>ttcaagataaaaccgatgacacggacgcccactccaggtcggaatcgtgtacggaaccgaagcagctgatcgttgttcttgctttttgtcttcattggtgtcgttacttcgggacacagagctggagtcatcttgagaattggcactttgttcatgttcagcaccaattttatccgagttcgacttgctaaggaattttggaggtggaggtttcattaaactcaagttggagtctttttgggcattgacactagtaggttctgaatcactagtaggttctgaatcactttgagaaataaaaggttgtgattgggacttctgttgatcgaattgtttggatgaatccgaatctgaatccgaattgcttagaagtgggggtttcattgaagtttgagtagagtttgaggtcgaaacttcatctaagtttgaagcatgaggttcctgggttacaaccgcggcggttttagggttccggggcggcggcgggttcatgtcagtcgtcattctaagacgggaagatgaacttagtggcaaggaggaaggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="21674" stop="20528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21374" g_stop="20828" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E688922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21374" e_stop="20828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGATAAAACCGATGACACGGACGCCCACTCCAGGTCGGAATCGTGTACGGAACCGAAGCAGCTGATCGTTGTTCTTGCTTTTTGTCTTCATTGGTGTCGTTACTTCGGGACACAGAGCTGGAGTCATCTTGAGAATTGGCACTTTGTTCATGTTCAGCACCAATTTTATCCGAGTTCGACTTGCTAAGGAATTTTGGAGGTGGAGGTTTCATTAAACTCAAGTTGGAGTCTTTTTGGGCATTGACACTAGTAGGTTCTGAATCACTAGTAGGTTCTGAATCACTTTGAGAAATAAAAGGTTGTGATTGGGACTTCTGTTGATCGAATTGTTTGGATGAATCCGAATCTGAATCCGAATTGCTTAGAAGTGGGGGTTTCATTGAAGTTTGAGTAGAGTTTGAGGTCGAAACTTCATCTAAGTTTGAAGCATGAGGTTCCTGGGTTACAACCGCGGCGGTTTTAGGGTTCCGGGGCGGCGGCGGGTTCATGTCAGTCGTCATTCTAAGACGGGAAGATGAACTTAGTGGCAAGGAGGAAGGTGGA</genome_strand>
        <mrna_strand>TTCAAGATAAAACCGATGACACGGACGCCCACTCCAGGTCGGAATCGTGTACGGAACCGAAGCAGCTGATCGTTGTTCTTGCTTTTTGTCTTCATTGGTGTCGTTACTTCGGGACACAGAGCTGGAGTCATCTTGAGAATTGGCACTTTGTTCATGTTCAGCACCAATTTTATCCGAGTTCGACTTGCTAAGGAATTTTGGAGGTGGAGGTTTCATTAAACTCAAGTTGGAGTCTTTTTGGGCATTGACACTAGTAGGTTCTGAATCACTAGTAGGTTCTGAATCACTTTGAGAAATAAAAGGTTGTGATTGGGACTTCTGTTGATCGAATTGTTTGGATGAATCCGAATCTGAATCCGAATTGCTTAGAAGTGGGGGTTTCATTGAAGTTTGAGTAGAGTTTGAGGTCGAAACTTCATCTAAGTTTGAAGCATGAGGTTCCTGGGTTACAACCGCGGCGGTTTTAGGGTTCCGGGGCGGCGGCGGGTTCATGTCAGTCGTCATTCTAAGACGGGAAGATGAACTTAGTGGCAAGGAGGAAGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261369" ref_strand="+" ref_description="SGN-E261369 [cLEG-57-C14]">
      <seq>tcaagataaaaccgatgacacggacgcccactccaggtcggaatcgtgtacggaaccgaagcagctgatcgttgttcttgctttttgtcttcattggtgtcgttacttcgggacacagagctggagtcatcttgagaattggcactttgttcatgttcagcaccaattttatccgagttcgacttgctaaggaattttggaggtggaggtttcattaaactcaagttggagtctttttgggcattgacactagtaggttctgaatcactagtaggttctgaatcactttgagaaataaaaggttgtgattgggacttctgttgatcgaattgtttggatgaatccgaatctgaatccgaattgcttagaagtgggggtttcattgaagtttgagtagagtttgaggtcgaaacttcatctaagtttgaagcatgaagttcctgggttacaaccgcggcggttttagggttccggggcggcggcgggttcatgtcagtcgtcattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="21673" stop="20567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21373" g_stop="20867" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E261369" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21373" e_stop="20867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATAAAACCGATGACACGGACGCCCACTCCAGGTCGGAATCGTGTACGGAACCGAAGCAGCTGATCGTTGTTCTTGCTTTTTGTCTTCATTGGTGTCGTTACTTCGGGACACAGAGCTGGAGTCATCTTGAGAATTGGCACTTTGTTCATGTTCAGCACCAATTTTATCCGAGTTCGACTTGCTAAGGAATTTTGGAGGTGGAGGTTTCATTAAACTCAAGTTGGAGTCTTTTTGGGCATTGACACTAGTAGGTTCTGAATCACTAGTAGGTTCTGAATCACTTTGAGAAATAAAAGGTTGTGATTGGGACTTCTGTTGATCGAATTGTTTGGATGAATCCGAATCTGAATCCGAATTGCTTAGAAGTGGGGGTTTCATTGAAGTTTGAGTAGAGTTTGAGGTCGAAACTTCATCTAAGTTTGAAGCATGAGGTTCCTGGGTTACAACCGCGGCGGTTTTAGGGTTCCGGGGCGGCGGCGGGTTCATGTCAGTCGTCATTCTA</genome_strand>
        <mrna_strand>TCAAGATAAAACCGATGACACGGACGCCCACTCCAGGTCGGAATCGTGTACGGAACCGAAGCAGCTGATCGTTGTTCTTGCTTTTTGTCTTCATTGGTGTCGTTACTTCGGGACACAGAGCTGGAGTCATCTTGAGAATTGGCACTTTGTTCATGTTCAGCACCAATTTTATCCGAGTTCGACTTGCTAAGGAATTTTGGAGGTGGAGGTTTCATTAAACTCAAGTTGGAGTCTTTTTGGGCATTGACACTAGTAGGTTCTGAATCACTAGTAGGTTCTGAATCACTTTGAGAAATAAAAGGTTGTGATTGGGACTTCTGTTGATCGAATTGTTTGGATGAATCCGAATCTGAATCCGAATTGCTTAGAAGTGGGGGTTTCATTGAAGTTTGAGTAGAGTTTGAGGTCGAAACTTCATCTAAGTTTGAAGCATGAAGTTCCTGGGTTACAACCGCGGCGGTTTTAGGGTTCCGGGGCGGCGGCGGGTTCATGTCAGTCGTCATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714448" ref_strand="+" ref_description="SGN-E714448 [FB11BH08]">
      <seq>caggaataaagttttggtaaaaccagatgctacacagttgactgctgactctggaattgaaagtgcagctcctggactaataataaggaagcgcaagcaagttgagaagtctgatgttactgaagtcaaacattctcaagaatccactggagctgatttacaagcagaagatgcggtagctctgctgttgaaacattctcaaagataccatagtactgatgatgaagtggaatccagcggaggtgatgtatcacatgaaagtcaaacgaggaaggaaaagaaaaaaaagcaaaagaaggttcttggtccagacagaccatcatttctgaagagtgagaaggattacaattcttgggttcctcctgaagggcaatcaggtgacggacgcacctcactgaatgatcgtcttggttactgaatggtagagattttgatcgtttgacacataactaactatgggatggggtagctcggcttacagattgctgatggatcatgtaactaaatagcatttacagcttggtttgagatctcatcttgcgaaaatccttcacagggacatctgagcgagaacatttgttgtttgaagagaagaaaagaaatagaaaacgtgaagatacaagagctggattatgatcccattctcccactcttgctcctgtaccttctgttaacaagaacctgacaccttcctgattgaattgtatatagagattgactcggaaaggatagagataatgagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="+" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="27120" stop="28566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27420" g_stop="27787" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27788" i_stop="27888" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27889" g_stop="28265" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="745" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="757"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="+" ref_id="SGN-E714448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27420" e_stop="27787"/>
          <exon e_start="27889" e_stop="28265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAGGTATGCCACTTATTTGGTTCATGCCTACGCTTAGTTGCTTACTAATGGATGTTCAAGTTTTTTTTTGACAATTTTGCTGGTCTTTGTGAAACTTTTACCAGGGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAA</genome_strand>
        <mrna_strand>CAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG.....................................................................................................GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351839" ref_strand="+" ref_description="SGN-E351839 [cTOS-8-C22]">
      <seq>aggaataaagttttggtaaaaccagatgctacacagttgactgctgactctggaattgaaagtgcagctcctggactaataataaggaagcgcaagcaagttgagaagtctgatgttactgaagtcaaacattctcaagaatccactggagctgatttacaagcagaagatgcggtagctctgctgttgaaacattctcaaagataccatagtactgatgatgaagtggaatccagcggaggtgatgtatcacatgaaagtcaaacgaggaaggaaaagaaaaaaaagcaaaagaaggttcttggtccagacagaccatcatttctgaagagtgagaaggattacaattcttgggttcctcctgaagggcaatcaggtgacggacgcacctcactgaatgatcgtcttggttactgaatggtagagattttgatcgtttgacacataactaactatgggatggggtagctcggcttacagattgctgatggatcatgtaactaaatagcatttacagcttggtttgagatctcatcttgcgaaaatccttcacagggacatctgagcgagaacatttgttgtttgaagagaagaaagaaatagaaaacgtgaagatacaagagctggattatgatcccattctcccactcttgctcctgtaccttctgttaacaagaactgacaccttcctgattgaattgtatatagagattgactcggaaaggatagagnatatgagaaaatgtgcttgtaaatgcatgctttgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="+" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="27121" stop="28593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27421" g_stop="27787" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27788" i_stop="27888" i_length="101">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27889" g_stop="28293" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="770" r_length="403" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="+" ref_id="SGN-E351839" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27421" e_stop="27787"/>
          <exon e_start="27889" e_stop="28293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAGGTATGCCACTTATTTGGTTCATGCCTACGCTTAGTTGCTTACTAATGGATGTTCAAGTTTTTTTTTGACAATTTTGCTGGTCTTTGTGAAACTTTTACCAGGGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAAATGTGCTTGTAATGCAATGCTTTGTGCC</genome_strand>
        <mrna_strand>AGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG.....................................................................................................GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAG-AAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAA-CTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGNATATGAGAAAATGTGCTTGTAAATGCATGCTTTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335319" ref_strand="+" ref_description="SGN-E335319 [cTOE-1-H22]">
      <seq>gtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaaccaacagagaaataacaactgtatggtgttagtgaggggaagacctccatcctcaagactgtcaaccaaaatgcaccgtacccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattgggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30400" stop="28824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30100" g_stop="30059" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="102" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="138" r_length="36" r_score="0.882"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29120" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="652" r_length="514" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E335319" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30100" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAA-CAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGA-GGGAAGA-CTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCA-CGTA-CCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATT-GGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCAATCTC</genome_strand>
        <mrna_strand>GTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACCAACAGAGAAATAA-CAACTG..........................................................................................TATGGTGTTAGTGAGGGGAAGACCTCCATCCTCAAG..............................................................................................................................ACTGTCAACCAAAATGCACCGTACCCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541062" ref_strand="+" ref_description="SGN-E541062 [TUS-61-K15](-)">
      <seq>gatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaagcaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30587" stop="28824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30287" g_stop="30059" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="289" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="323" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29125" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="829" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="830" polyA_stop="848"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E541062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30287" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCA</genome_strand>
        <mrna_strand>GATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716531" ref_strand="+" ref_description="SGN-E716531 [FB17BC06]">
      <seq>gggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30076" stop="28824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29776" g_stop="29757" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29630" g_stop="29128" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="523" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="544"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E716531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29776" e_stop="29757"/>
          <exon e_start="29630" e_stop="29128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAA</genome_strand>
        <mrna_strand>GGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223630" ref_strand="+" ref_description="SGN-E223630 [cLEL-14-N7](-)">
      <seq>ctgctggtacctatggcaataagcaaagttgcccttgctacaataactgaaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatnctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="29831" stop="28824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29531" g_stop="29128" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="421"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E223630" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29531" e_stop="29128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATT-AAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAA</genome_strand>
        <mrna_strand>CTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGAAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATNCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733584" ref_strand="+" ref_description="SGN-E733584 [LB10BF06]">
      <seq>cttatcttccacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagcttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30446" stop="28845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30146" g_stop="30059" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="147" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="181" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29142" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="669" r_length="488" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E733584" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30146" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</genome_strand>
        <mrna_strand>CTTATCTTC-CACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGC-TTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716891" ref_strand="+" ref_description="SGN-E716891 [FB18BD02]">
      <seq>aaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatctaatccaaggccaacttggcgtttgaatgggctattatactannnnnnnnaaanaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30412" stop="28830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30112" g_stop="30059" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="114" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="148" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29142" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="637" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E716891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30112" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</genome_strand>
        <mrna_strand>AAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345354" ref_strand="-" ref_description="SGN-E345354 [cTOF-13-M11]">
      <seq>ttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttattggtgtaccataagaattatagaatgttcaagtcatttaatccaaggccaacttggcgtttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30387" stop="28845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30087" g_stop="30059" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="89" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="123" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29142" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="612" r_length="489" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="637"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E345354" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345354" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30087" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGG</genome_strand>
        <mrna_strand>TTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATTTAATCCAAGGCCAACTTGGCGTTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345060" ref_strand="+" ref_description="SGN-E345060 [cTOF-22-N16]">
      <seq>tcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagttaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatatttatttggtgtaccataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30447" stop="28895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30147" g_stop="30059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="149" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="183" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29195" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="610" r_length="427" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E345060" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30147" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTA-TTGGTGTACCATAAG</genome_strand>
        <mrna_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAG----------TTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTTGGTGTACCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734181" ref_strand="+" ref_description="SGN-E734181 [LB12AA04]">
      <seq>tcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgatnnnnnnnnnaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30447" stop="28915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30147" g_stop="30059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="149" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="183" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29207" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="607" r_length="424" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E734181" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30147" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTG</genome_strand>
        <mrna_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATNNNNNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344888" ref_strand="+" ref_description="SGN-E344888 [cTOF-21-L7]">
      <seq>tcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagncttttttgtgagacttattttatattattattatgattatatcttaagtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30447" stop="28913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30147" g_stop="30059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="149" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="183" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29213" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="601" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E344888" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30147" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATAT</genome_strand>
        <mrna_strand>TCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGNCTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344852" ref_strand="+" ref_description="SGN-E344852 [cTOF-21-M24]">
      <seq>ttacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattantatcttaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30440" stop="28914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30139" g_stop="30059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="141" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="175" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29217" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="590" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="608"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E344852" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30139" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTA-TATCTTAAGTG</genome_strand>
        <mrna_strand>TTACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTANTATCTTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577591" ref_strand="-" ref_description="SGN-E577591 [LE15AE01]">
      <seq>gggaaaatgagcactgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccacctgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttattttatattattattatgattatatcttaagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30415" stop="28914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30115" g_stop="30059" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="117" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="151" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29217" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="565" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="578"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E577591" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577591" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30115" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTG</genome_strand>
        <mrna_strand>GGGAAAATGAGCACTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCACCTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290333" ref_strand="+" ref_description="SGN-E290333 [cLES-20-I23]">
      <seq>tcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgttccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctatttttgtgagacttattttatattattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30439" stop="28936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30139" g_stop="30059" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="141" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="175" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29236" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="570" r_length="395" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E290333" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30139" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTAT</genome_strand>
        <mrna_strand>TCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTTCCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTATTTTTGTGAGACTTATTTTATATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713502" ref_strand="+" ref_description="SGN-E713502 [FB08DC06]">
      <seq>cgtgtatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtacaatagcatggttatgattatgcagctttttttgtgagacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30219" stop="28950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29919" g_stop="29881" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="74" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29630" g_stop="29251" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="454" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E713502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29919" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTG-ATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTT</genome_strand>
        <mrna_strand>CGTGTATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366904" ref_strand="+" ref_description="SGN-E366904 [cLPT-6-E19]">
      <seq>aaacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaagtcaggtttcaagggccaacactatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagtcttcatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcaaacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgtctcaagtggtgtattagctagtaatgttaggtcccaattatatagaagaagattgggctagctacaagtactatagcatggttataattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30437" stop="28970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30137" g_stop="30059" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="139" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="173" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29270" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="531" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E366904" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30137" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGC</genome_strand>
        <mrna_strand>AAACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAGTCAG......................................................................................................................GTTTCAAGGGCCAACACTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGTCTTCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAAACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACAC---TTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACTATAGCATGGTTATAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279965" ref_strand="+" ref_description="SGN-E279965 [cLER-8-N13]">
      <seq>gggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30415" stop="29062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30115" g_stop="30059" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="117" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="151" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29362" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="420" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E279965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30115" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTC</genome_strand>
        <mrna_strand>GGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548488" ref_strand="+" ref_description="SGN-E548488 [TUS-61-K15]">
      <seq>ttaatgtatactttttagattatgctatgtatggcttttgaactgaactatgagaaaaaaattgacttgaaacgaacaaaaagggcaaaaaacttcttacactatgcgaaattgaaataaaatgctccggttaatagtttggtccaaaaatattgatgcagttaatagattttggaccaaactatcgatgctgtgtatagatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagacccaaaagagtggcccaaagtgcccatgatcatccatattgtattaaaatgtgactgcagacacccaacttctgtcaaatctagtagtattaattaattaatcaacacttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30786" stop="29063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30486" g_stop="30059" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="488" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="522" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29363" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="790" r_length="268" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E548488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30486" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGA-CCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGT</genome_strand>
        <mrna_strand>TTAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCCAAAAGA-GTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338166" ref_strand="+" ref_description="SGN-E338166 [cTOE-13-N19]">
      <seq>acaaaattactacaatggctgggaaaatgagcattgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatgatcatccatattgtattaaaatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30435" stop="29124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30135" g_stop="30059" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="137" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="171" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29424" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="378" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E338166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30135" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGA</genome_strand>
        <mrna_strand>ACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337246" ref_strand="+" ref_description="SGN-E337246 [cTOE-7-I14]">
      <seq>aattactacaatggctgggaaaatgagcgttgtcttgtttgttcttttggtggttttcctgactcaaaatcaggtttcaagggccaacattatgcgtgatgagcagcagcaacaacagagaaataaccaactgtatggtgttagtgagggaagactccatcctcaagattgtcaaccaaaatgcacgtaccggtgttcaaagacatcgtataagaagccgtgtatgtttttctgccagaaatgctgtgcaaagtgtttgtgtgttcctgctggtacctatggcaataagcaaagttgcccttgctacaataactggaagaccaaaagaggtggcccaaagtgcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30431" stop="29150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30131" g_stop="30059" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29940" g_stop="29881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="133" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29790" g_stop="29757" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="167" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29630" g_stop="29450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="348" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E337246" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30131" e_stop="30059"/>
          <exon e_start="29940" e_stop="29881"/>
          <exon e_start="29790" e_stop="29757"/>
          <exon e_start="29630" e_stop="29450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAGGTGAGCCCAAATGTTTTGCGCATCTCTATTGTTTTCGACTCGAATTATATATATATATATATATATATACACGTATTGTTGAAAATATATTAAATGATGTGTGTGGTTGTGTGTTCAGGTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTGGTATGATCCATCTTGCGATTTTATGTACTTTCTTAGGTGATCAATTTTAATTTCCATGACTAAACTATATTTTATATGTGGTGTTTGCAGTATGGTGTTAGTGAGGGAAGACTCCATCCTCAAGGTATAAAAACTCACTAACTAATTTTAAGTTCAACTTCTCATAGGAATAATGCTGAGATTACCGTACAAATTTTTAATAAAGGTAGGTAGCTCCGTCCTGATGAAGTGTGTTGTTGTAATTTTTCAGATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATG</genome_strand>
        <mrna_strand>AATTACTACAATGGCTGGGAAAATGAGCGTTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG......................................................................................................................GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG..........................................................................................TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG..............................................................................................................................ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294744" ref_strand="+" ref_description="SGN-E294744 [cLET-17-M11]">
      <seq>taatgtatactttttagattatgctatgtatggcttttgaactgaactatgagaaaaaaattgacttgaaacgaacaaaaagggcaaaaaacttcttacactatgcgaaattgaaataaaatgctccggttaatagtttggtccaaaaatattgatgcagttaatagattttggaccaaactatcgatgctgtgtatagatttattcaattttgcataggggatactgttggagtgtgacaacagcaagtgctaggctaaagagattaaccacttgagaagatccctctctataaatagaagtcgattctctcaaagctctacacacttcacttcctctcttagcttcacacaaaattactacaatggctgggaaaatgagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="-" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="30785" stop="29801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30485" g_stop="30101" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="-" ref_id="SGN-E294744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30485" e_stop="30101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATT</genome_strand>
        <mrna_strand>TAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294745" ref_strand="+" ref_description="SGN-E294745 [cLET-17-M11](-)">
      <seq>aatgctcattttcccagccattgtagtaattttgtgtgaagctaagagaggaagtgaagtgtgtagagctttgagagaatcgacttctatttatagagagggatcttctcaagtggttaatctctttagcctagcacttgctgttgtcacactccaacagtatcccctatgcaaaattgaataaatctatacacagcatcgatagtttggtccaaaatctattaactgcatcaatatttttggaccaaactattaaccggagcattttatttcaatttcgcatagtgtaagaagttttttgccctttttgttcgtttcaagtcaatttttttctcatagttcagttcaaaagccatacatagcataatctaaaaagtatacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0214B22-4UzNQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0214B22.1" temp_strand="+" temp_description="C02HBa0214B22.1  AC215425.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0214B22 sequenced_by:kribb upload_account_name:korea">
        <position start="29801" stop="30785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30101" g_stop="30485" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0214B22.1" gen_strand="+" ref_id="SGN-E294745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0214B22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30101" e_stop="30485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTCATTTTCCCAGCCATTGTAGTAATTTTGTGTGAAGCTAAGAGAGGAAGTGAAGTGTGTAGAGCTTTGAGAGAATCGACTTCTATTTATAGAGAGGGATCTTCTCAAGTGGTTAATCTCTTTAGCCTAGCACTTGCTGTTGTCACACTCCAACAGTATCCCCTATGCAAAATTGAATAAATCTATACACAGCATCGATAGTTTGGTCCAAAATCTATTAACTGCATCAATATTTTTGGACCAAACTATTAACCGGAGCATTTTATTTCAATTTCGCATAGTGTAAGAAGTTTTTTGCCCTTTTTGTTCGTTTCAAGTCAATTTTTTTCTCATAGTTCAGTTCAAAAGCCATACATAGCATAATCTAAAAAGTATACATTA</genome_strand>
        <mrna_strand>AATGCTCATTTTCCCAGCCATTGTAGTAATTTTGTGTGAAGCTAAGAGAGGAAGTGAAGTGTGTAGAGCTTTGAGAGAATCGACTTCTATTTATAGAGAGGGATCTTCTCAAGTGGTTAATCTCTTTAGCCTAGCACTTGCTGTTGTCACACTCCAACAGTATCCCCTATGCAAAATTGAATAAATCTATACACAGCATCGATAGTTTGGTCCAAAATCTATTAACTGCATCAATATTTTTGGACCAAACTATTAACCGGAGCATTTTATTTCAATTTCGCATAGTGTAAGAAGTTTTTTGCCCTTTTTGTTCGTTTCAAGTCAATTTTTTTCTCATAGTTCAGTTCAAAAGCCATACATAGCATAATCTAAAAAGTATACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="826" PGL_stop="226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="826" e_stop="226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="826" e_stop="226" e_length="601"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="826" stop="226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACACTACAGTTGTCAGAACAGAACTGCCAAGTGCAGCACTCTTATCTGCTTTAGTGCAGAGCATGGTGGATGCTATCTTTTTCCAAGGAGATCTACGGGAAACTTGGGGAGCAGAGGCTCTTAAATGGGCTATGGAATGCACATCAAGACACCTGGCCTGCCGCTCGCACCAGATATACCGGGCGCTGCGGCCTCGTGTAACTAATGATGCTTGTGTATCCTTGCTACGTTGCCTACACAGATGCTTGAGTAACCCAGTACCACCTGTTCTAGGCTTTGTCATGGAGATCTTGTTGACATTACAGGTGATGGTGGAGAATATGGAGCCAGAAAAGGTGATATTATATCCCCAGCTTTTCTGGGGTTGTGTTGCCATGATGCATACAGACTTCGTTCATGTGTATTGTCAGGTGCTGGAACTCGTTTGTCGTGTAATTGATCGCTTATCATTCCGAGATAGAACTACTGAGAATGTACTTCTTTCAAGCATGCCCAGAGATGAGCTTGATTCAAATGTTGGTGACAATTCTGACTTCCAGCATCTGGAATCACGGAATGCTAGTGAGCCATTACCCTCAAATGCAAAGGTGCCAGTCTTTG</gDNA_template>
            <first_frame> D  T  T  V  V  R  T  E  L  P  S  A  A  L  L  S  A  L  V  Q  S  M  V  D  A  I  F  F  Q  G  D  L  R  E  T  W  G  A  E  A  L  K  W  A  M  E  C  T  S  R  H  L  A  C  R  S  H  Q  I  Y  R  A  L  R  P  R  V  T  N  D  A  C  V  S  L  L  R  C  L  H  R  C  L  S  N  P  V  P  P  V  L  G  F  V  M  E  I  L  L  T  L  Q  V  M  V  E  N  M  E  P  E  K  V  I  L  Y  P  Q  L  F  W  G  C  V  A  M  M  H  T  D  F  V  H  V  Y  C  Q  V  L  E  L  V  C  R  V  I  D  R  L  S  F  R  D  R  T  T  E  N  V  L  L  S  S  M  P  R  D  E  L  D  S  N  V  G  D  N  S  D  F  Q  H  L  E  S  R  N  A  S  E  P  L  P  S  N  A  K  V  P  V  F  </first_frame>
            <second_frame>  T  L  Q  L  S  E  Q  N  C  Q  V  Q  H  S  Y  L  L  *  C  R  A  W  W  M  L  S  F  S  K  E  I  Y  G  K  L  G  E  Q  R  L  L  N  G  L  W  N  A  H  Q  D  T  W  P  A  A  R  T  R  Y  T  G  R  C  G  L  V  *  L  M  M  L  V  Y  P  C  Y  V  A  Y  T  D  A  *  V  T  Q  Y  H  L  F  *  A  L  S  W  R  S  C  *  H  Y  R  *  W  W  R  I  W  S  Q  K  R  *  Y  Y  I  P  S  F  S  G  V  V  L  P  *  C  I  Q  T  S  F  M  C  I  V  R  C  W  N  S  F  V  V  *  L  I  A  Y  H  S  E  I  E  L  L  R  M  Y  F  F  Q  A  C  P  E  M  S  L  I  Q  M  L  V  T  I  L  T  S  S  I  W  N  H  G  M  L  V  S  H  Y  P  Q  M  Q  R  C  Q  S  L </second_frame>
            <third_frame>   H  Y  S  C  Q  N  R  T  A  K  C  S  T  L  I  C  F  S  A  E  H  G  G  C  Y  L  F  P  R  R  S  T  G  N  L  G  S  R  G  S  *  M  G  Y  G  M  H  I  K  T  P  G  L  P  L  A  P  D  I  P  G  A  A  A  S  C  N  *  *  C  L  C  I  L  A  T  L  P  T  Q  M  L  E  *  P  S  T  T  C  S  R  L  C  H  G  D  L  V  D  I  T  G  D  G  G  E  Y  G  A  R  K  G  D  I  I  S  P  A  F  L  G  L  C  C  H  D  A  Y  R  L  R  S  C  V  L  S  G  A  G  T  R  L  S  C  N  *  S  L  I  I  P  R  *  N  Y  *  E  C  T  S  F  K  H  A  Q  R  *  A  *  F  K  C  W  *  Q  F  *  L  P  A  S  G  I  T  E  C  *  *  A  I  T  L  K  C  K  G  A  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="826" stop="227"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTTVVRTELPSAALLSALVQSMVDAIFFQGDLRETWGAEALKWAMECTSRHLACRSHQIYRALRPRVTNDACVSLLRCLHRCLSNPVPPVLGFVMEILLTLQVMVENMEPEKVILYPQLFWGCVAMMHTDFVHVYCQVLELVCRVIDRLSFRDRTTENVLLSSMPRDELDSNVGDNSDFQHLESRNASEPLPSNAKVPVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15537" PGL_stop="11628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15537" e_stop="15310"/>
            <exon e_start="15099" e_stop="14910"/>
            <exon e_start="14170" e_stop="14052"/>
            <exon e_start="12681" e_stop="12636"/>
            <exon e_start="11838" e_stop="11766"/>
            <exon e_start="11679" e_stop="11628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.909" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15537" e_stop="15310" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.909" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15309" i_stop="15100" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15099" e_stop="14910" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.893">
            <gDNA_intron_boundary i_start="14909" i_stop="14171" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14170" e_stop="14052" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14051" i_stop="12682" i_length="1370"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12681" e_stop="12636" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12635" i_stop="11839" i_length="797"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11838" e_stop="11766" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11765" i_stop="11680" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11679" e_stop="11628" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15537" stop="15310"/>
              <exon start="15099" stop="14910"/>
              <exon start="14170" stop="14052"/>
              <exon start="12681" stop="12636"/>
              <exon start="11838" stop="11766"/>
              <exon start="11679" stop="11628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACTGGTCTGATTGGGTCTACAGCTAAAATCCAACTATCAGAACAAGAAAACTGCAGTAATGACCCGGCAGTGAAACGCTTCCTTTATTGTTTTTGCTACCTGAGAAAGAAATCAGTATCAGGCAGGAAGATAGAAACTGGAAAACAATATCAATGACTAAGTTTGAAGATGAAGATGGATTATTCACTCGCCAATGAATTTTCAAGTAGCAGGATTTCCGATTCCG : GTACGAAGTGGACAGTTTCTACTGGATATGAAATCTGAAGTTTGCAGTTGCATCAAAGTGGGGTAAGATTGAGAGAACAAAAAGTAAAAAAGAAATGAAGGCTGGGAGTGCAGCTAAGCTGATTGTTGACGCGTTGCTTCAGAGGTTCCTTCCGCTTGCTAGGCGTCGCATTGAAACTGCTCAAGCTCAG : GATGGACAGTACCTTCGGCCATCTGATCCAGCCTATGAGCAAGTACTGGATTCATTGGCTATGGTTGCACGCCACACACCTGTTCCTCTCCTGGAGGCCCTTCTAAGATGGAGAGAAAG : CGAATCTCCCAAAGGTGCAAATGATGCATCAACATTTCAGAGAAAG : CTTGCAGTGGAGTGCATCTTTTGTTCTGCGTGTATTCGCTTTGTGGAATGTTGTCCACAAGAAGGGCTTACAG : AGAAGCTTTGGATTGGGCTTGAGAATTTTGTATTCGATTGGCTAATAAATGC</gDNA_template>
            <first_frame> A  L  V  *  L  G  L  Q  L  K  S  N  Y  Q  N  K  K  T  A  V  M  T  R  Q  *  N  A  S  F  I  V  F  A  T  *  E  R  N  Q  Y  Q  A  G  R  *  K  L  E  N  N  I  N  D  *  V  *  R  *  R  W  I  I  H  S  P  M  N  F  Q  V  A  G  F  P  I  P  :  V  R  S  G  Q  F  L  L  D  M  K  S  E  V  C  S  C  I  K  V  G  *  D  *  E  N  K  K  *  K  R  N  E  G  W  E  C  S  *  A  D  C  *  R  V  A  S  E  V  P  S  A  C  *  A  S  H  *  N  C  S  S  S   : G  W  T  V  P  S  A  I  *  S  S  L  *  A  S  T  G  F  I  G  Y  G  C  T  P  H  T  C  S  S  P  G  G  P  S  K  M  E  R  K  :  R  I  S  Q  R  C  K  *  C  I  N  I  S  E  K   : A  C  S  G  V  H  L  L  F  C  V  Y  S  L  C  G  M  L  S  T  R  R  A  Y  R :   E  A  L  D  W  A  *  E  F  C  I  R  L  A  N  K  C </first_frame>
            <second_frame>  H  W  S  D  W  V  Y  S  *  N  P  T  I  R  T  R  K  L  Q  *  *  P  G  S  E  T  L  P  L  L  F  L  L  P  E  K  E  I  S  I  R  Q  E  D  R  N  W  K  T  I  S  M  T  K  F  E  D  E  D  G  L  F  T  R  Q  *  I  F  K  *  Q  D  F  R  F  R :   Y  E  V  D  S  F  Y  W  I  *  N  L  K  F  A  V  A  S  K  W  G  K  I  E  R  T  K  S  K  K  E  M  K  A  G  S  A  A  K  L  I  V  D  A  L  L  Q  R  F  L  P  L  A  R  R  R  I  E  T  A  Q  A  Q  :  D  G  Q  Y  L  R  P  S  D  P  A  Y  E  Q  V  L  D  S  L  A  M  V  A  R  H  T  P  V  P  L  L  E  A  L  L  R  W  R  E  S :   E  S  P  K  G  A  N  D  A  S  T  F  Q  R  K  :  L  A  V  E  C  I  F  C  S  A  C  I  R  F  V  E  C  C  P  Q  E  G  L  T   : E  K  L  W  I  G  L  E  N  F  V  F  D  W  L  I  N   </second_frame>
            <third_frame>   T  G  L  I  G  S  T  A  K  I  Q  L  S  E  Q  E  N  C  S  N  D  P  A  V  K  R  F  L  Y  C  F  C  Y  L  R  K  K  S  V  S  G  R  K  I  E  T  G  K  Q  Y  Q  *  L  S  L  K  M  K  M  D  Y  S  L  A  N  E  F  S  S  S  R  I  S  D  S   : G  T  K  W  T  V  S  T  G  Y  E  I  *  S  L  Q  L  H  Q  S  G  V  R  L  R  E  Q  K  V  K  K  K  *  R  L  G  V  Q  L  S  *  L  L  T  R  C  F  R  G  S  F  R  L  L  G  V  A  L  K  L  L  K  L  R :   M  D  S  T  F  G  H  L  I  Q  P  M  S  K  Y  W  I  H  W  L  W  L  H  A  T  H  L  F  L  S  W  R  P  F  *  D  G  E  K   : A  N  L  P  K  V  Q  M  M  H  Q  H  F  R  E  S :   L  Q  W  S  A  S  F  V  L  R  V  F  A  L  W  N  V  V  H  K  K  G  L  Q  :  R  S  F  G  L  G  L  R  I  L  Y  S  I  G  *  *  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15068" stop="14910"/>
                    <exon start="14170" stop="14052"/>
                    <exon start="12681" stop="12636"/>
                    <exon start="11838" stop="11766"/>
                    <exon start="11679" stop="11630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLKFAVASKWGKIERTKSKKEMKAGSAAKLIVDALLQRFLPLARRRIETAQAQDGQYLRPSDPAYEQVLDSLAMVARHTPVPLLEALLRWRESESPKGANDASTFQRKLAVECIFCSACIRFVECCPQEGLTEKLWIGLENFVFDWLIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21374" PGL_stop="20818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21374" e_stop="20818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21374" e_stop="20818" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21374" stop="20818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21374" stop="20828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21373" stop="20867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAAGATAAAACCGATGACACGGACGCCCACTCCAGGTCGGAATCGTGTACGGAACCGAAGCAGCTGATCGTTGTTCTTGCTTTTTGTCTTCATTGGTGTCGTTACTTCGGGACACAGAGCTGGAGTCATCTTGAGAATTGGCACTTTGTTCATGTTCAGCACCAATTTTATCCGAGTTCGACTTGCTAAGGAATTTTGGAGGTGGAGGTTTCATTAAACTCAAGTTGGAGTCTTTTTGGGCATTGACACTAGTAGGTTCTGAATCACTAGTAGGTTCTGAATCACTTTGAGAAATAAAAGGTTGTGATTGGGACTTCTGTTGATCGAATTGTTTGGATGAATCCGAATCTGAATCCGAATTGCTTAGAAGTGGGGGTTTCATTGAAGTTTGAGTAGAGTTTGAGGTCGAAACTTCATCTAAGTTTGAAGCATGAGGTTCCTGGGTTACAACCGCGGCGGTTTTAGGGTTCCGGGGCGGCGGCGGGTTCATGTCAGTCGTCATTCTAAGACGGGAAGATGAACTTAGTGGCAAGGAGGAAGGTGGAGGAGAATGGA</gDNA_template>
            <first_frame> F  K  I  K  P  M  T  R  T  P  T  P  G  R  N  R  V  R  N  R  S  S  *  S  L  F  L  L  F  V  F  I  G  V  V  T  S  G  H  R  A  G  V  I  L  R  I  G  T  L  F  M  F  S  T  N  F  I  R  V  R  L  A  K  E  F  W  R  W  R  F  H  *  T  Q  V  G  V  F  L  G  I  D  T  S  R  F  *  I  T  S  R  F  *  I  T  L  R  N  K  R  L  *  L  G  L  L  L  I  E  L  F  G  *  I  R  I  *  I  R  I  A  *  K  W  G  F  H  *  S  L  S  R  V  *  G  R  N  F  I  *  V  *  S  M  R  F  L  G  Y  N  R  G  G  F  R  V  P  G  R  R  R  V  H  V  S  R  H  S  K  T  G  R  *  T  *  W  Q  G  G  R  W  R  R  M   </first_frame>
            <second_frame>  S  R  *  N  R  *  H  G  R  P  L  Q  V  G  I  V  Y  G  T  E  A  A  D  R  C  S  C  F  L  S  S  L  V  S  L  L  R  D  T  E  L  E  S  S  *  E  L  A  L  C  S  C  S  A  P  I  L  S  E  F  D  L  L  R  N  F  G  G  G  G  F  I  K  L  K  L  E  S  F  W  A  L  T  L  V  G  S  E  S  L  V  G  S  E  S  L  *  E  I  K  G  C  D  W  D  F  C  *  S  N  C  L  D  E  S  E  S  E  S  E  L  L  R  S  G  G  F  I  E  V  *  V  E  F  E  V  E  T  S  S  K  F  E  A  *  G  S  W  V  T  T  A  A  V  L  G  F  R  G  G  G  G  F  M  S  V  V  I  L  R  R  E  D  E  L  S  G  K  E  E  G  G  G  E  W  </second_frame>
            <third_frame>   Q  D  K  T  D  D  T  D  A  H  S  R  S  E  S  C  T  E  P  K  Q  L  I  V  V  L  A  F  C  L  H  W  C  R  Y  F  G  T  Q  S  W  S  H  L  E  N  W  H  F  V  H  V  Q  H  Q  F  Y  P  S  S  T  C  *  G  I  L  E  V  E  V  S  L  N  S  S  W  S  L  F  G  H  *  H  *  *  V  L  N  H  *  *  V  L  N  H  F  E  K  *  K  V  V  I  G  T  S  V  D  R  I  V  W  M  N  P  N  L  N  P  N  C  L  E  V  G  V  S  L  K  F  E  *  S  L  R  S  K  L  H  L  S  L  K  H  E  V  P  G  L  Q  P  R  R  F  *  G  S  G  A  A  A  G  S  C  Q  S  S  F  *  D  G  K  M  N  L  V  A  R  R  K  V  E  E  N  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0214B22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27420" PGL_stop="28293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27420" e_stop="27787"/>
            <exon e_start="27889" e_stop="28293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27420" e_stop="27787" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27788" i_stop="27888" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27889" e_stop="28293" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27420" stop="27787"/>
              <exon start="27889" stop="28265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27421" stop="27787"/>
              <exon start="27889" stop="28293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAATAAAGTTTTGGTAAAACCAGATGCTACACAGTTGACTGCTGACTCTGGAATTGAAAGTGCAGCTCCTGGACTAATAATAAGGAAGCGCAAGCAAGTTGAGAAGTCTGATGTTACTGAAGTCAAACATTCTCAAGAATCCACTGGAGCTGATTTACAAGCAGAAGATGCGGTAGCTCTGCTGTTGAAACATTCTCAAAGATACCATAGTACTGATGATGAAGTGGAATCCAGCGGAGGTGATGTATCACATGAAAGTCAAACGAGGAAGGAAAAGAAAAAAAAGCAAAAGAAGGTTCTTGGTCCAGACAGACCATCATTTCTGAAGAGTGAGAAGGATTACAATTCTTGGGTTCCTCCTGAAG : GGCAATCAGGTGACGGACGCACCTCACTGAATGATCGTCTTGGTTACTGAATGGTAGAGATTTTGATCGTTTGACACATAACTAACTATGGGATGGGGTAGCTCGGCTTACAGATTGCTGATGGATCATGTAACTAAATAGCATTTACAGCTTGGTTTGAGATCTCATCTTGCGAAAATCCTTCACAGGGACATCTGAGCGAGAACATTTGTTGTTTGAAGAGAAGAAAAGAAATAGAAAACGTGAAGATACAAGAGCTGGATTATGATCCCATTCTCCCACTCTTGCTCCTGTACCTTCTGTTAACAAGAACCTGACACCTTCCTGATTGAATTGTATATAGAGATTGACTCGGAAAGGATAGAGATAATGAGAAAATGTGCTTGTAATGCAATGCTTTGTGCC</gDNA_template>
            <first_frame> Q  E  *  S  F  G  K  T  R  C  Y  T  V  D  C  *  L  W  N  *  K  C  S  S  W  T  N  N  K  E  A  Q  A  S  *  E  V  *  C  Y  *  S  Q  T  F  S  R  I  H  W  S  *  F  T  S  R  R  C  G  S  S  A  V  E  T  F  S  K  I  P  *  Y  *  *  *  S  G  I  Q  R  R  *  C  I  T  *  K  S  N  E  E  G  K  E  K  K  A  K  E  G  S  W  S  R  Q  T  I  I  S  E  E  *  E  G  L  Q  F  L  G  S  S  *  R :   A  I  R  *  R  T  H  L  T  E  *  S  S  W  L  L  N  G  R  D  F  D  R  L  T  H  N  *  L  W  D  G  V  A  R  L  T  D  C  *  W  I  M  *  L  N  S  I  Y  S  L  V  *  D  L  I  L  R  K  S  F  T  G  T  S  E  R  E  H  L  L  F  E  E  K  K  R  N  R  K  R  E  D  T  R  A  G  L  *  S  H  S  P  T  L  A  P  V  P  S  V  N  K  N  L  T  P  S  *  L  N  C  I  *  R  L  T  R  K  G  *  R  *  *  E  N  V  L  V  M  Q  C  F  V   </first_frame>
            <second_frame>  R  N  K  V  L  V  K  P  D  A  T  Q  L  T  A  D  S  G  I  E  S  A  A  P  G  L  I  I  R  K  R  K  Q  V  E  K  S  D  V  T  E  V  K  H  S  Q  E  S  T  G  A  D  L  Q  A  E  D  A  V  A  L  L  L  K  H  S  Q  R  Y  H  S  T  D  D  E  V  E  S  S  G  G  D  V  S  H  E  S  Q  T  R  K  E  K  K  K  K  Q  K  K  V  L  G  P  D  R  P  S  F  L  K  S  E  K  D  Y  N  S  W  V  P  P  E   : G  Q  S  G  D  G  R  T  S  L  N  D  R  L  G  Y  *  M  V  E  I  L  I  V  *  H  I  T  N  Y  G  M  G  *  L  G  L  Q  I  A  D  G  S  C  N  *  I  A  F  T  A  W  F  E  I  S  S  C  E  N  P  S  Q  G  H  L  S  E  N  I  C  C  L  K  R  R  K  E  I  E  N  V  K  I  Q  E  L  D  Y  D  P  I  L  P  L  L  L  L  Y  L  L  L  T  R  T  *  H  L  P  D  *  I  V  Y  R  D  *  L  G  K  D  R  D  N  E  K  M  C  L  *  C  N  A  L  C  </second_frame>
            <third_frame>   G  I  K  F  W  *  N  Q  M  L  H  S  *  L  L  T  L  E  L  K  V  Q  L  L  D  *  *  *  G  S  A  S  K  L  R  S  L  M  L  L  K  S  N  I  L  K  N  P  L  E  L  I  Y  K  Q  K  M  R  *  L  C  C  *  N  I  L  K  D  T  I  V  L  M  M  K  W  N  P  A  E  V  M  Y  H  M  K  V  K  R  G  R  K  R  K  K  S  K  R  R  F  L  V  Q  T  D  H  H  F  *  R  V  R  R  I  T  I  L  G  F  L  L  K  :  G  N  Q  V  T  D  A  P  H  *  M  I  V  L  V  T  E  W  *  R  F  *  S  F  D  T  *  L  T  M  G  W  G  S  S  A  Y  R  L  L  M  D  H  V  T  K  *  H  L  Q  L  G  L  R  S  H  L  A  K  I  L  H  R  D  I  *  A  R  T  F  V  V  *  R  E  E  K  K  *  K  T  *  R  Y  K  S  W  I  M  I  P  F  S  H  S  C  S  C  T  F  C  *  Q  E  P  D  T  F  L  I  E  L  Y  I  E  I  D  S  E  R  I  E  I  M  R  K  C  A  C  N  A  M  L  C  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27421" stop="27787"/>
                    <exon start="27889" stop="27938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNKVLVKPDATQLTADSGIESAAPGLIIRKRKQVEKSDVTEVKHSQESTGADLQAEDAVALLLKHSQRYHSTDDEVESSGGDVSHESQTRKEKKKKQKKVLGPDRPSFLKSEKDYNSWVPPEGQSGDGRTSLNDRLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30486" PGL_stop="29120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30486" e_stop="30059"/>
            <exon e_start="29940" e_stop="29881"/>
            <exon e_start="29790" e_stop="29757"/>
            <exon e_start="29630" e_stop="29120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30486" e_stop="30059" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30058" i_stop="29941" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29940" e_stop="29881" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29880" i_stop="29791" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29790" e_stop="29757" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="29756" i_stop="29631" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29630" e_stop="29120" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30486" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30485" stop="30101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30287" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30147" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30147" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30147" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30146" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30139" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30139" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30137" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30135" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30131" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30115" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577591" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30115" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30112" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30100" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30087" stop="30059"/>
              <exon start="29940" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345354" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29919" stop="29881"/>
              <exon start="29790" stop="29757"/>
              <exon start="29630" stop="29251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29776" stop="29757"/>
              <exon start="29630" stop="29128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29531" stop="29128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATGTATACTTTTTAGATTATGCTATGTATGGCTTTTGAACTGAACTATGAGAAAAAAATTGACTTGAAACGAACAAAAAGGGCAAAAAACTTCTTACACTATGCGAAATTGAAATAAAATGCTCCGGTTAATAGTTTGGTCCAAAAATATTGATGCAGTTAATAGATTTTGGACCAAACTATCGATGCTGTGTATAGATTTATTCAATTTTGCATAGGGGATACTGTTGGAGTGTGACAACAGCAAGTGCTAGGCTAAAGAGATTAACCACTTGAGAAGATCCCTCTCTATAAATAGAAGTCGATTCTCTCAAAGCTCTACACACTTCACTTCCTCTCTTAGCTTCACACAAAATTACTACAATGGCTGGGAAAATGAGCATTGTCTTGTTTGTTCTTTTGGTGGTTTTCCTGACTCAAAATCAG : GTTTCAAGGGCCAACATTATGCGTGATGAGCAGCAGCAACAACAGAGAAATAACCAACTG : TATGGTGTTAGTGAGGGAAGACTCCATCCTCAAG : ATTGTCAACCAAAATGCACGTACCGGTGTTCAAAGACATCGTATAAGAAGCCGTGTATGTTTTTCTGCCAGAAATGCTGTGCAAAGTGTTTGTGTGTTCCTGCTGGTACCTATGGCAATAAGCAAAGTTGCCCTTGCTACAATAACTGGAAGACCAAAAGAGGTGGCCCAAAGTGCCCATGATCATCCATATTGTATTAAAATGTGACTGCAGACACCCAACTTCTGTCAAATCTAGTAGTATTAATTAATTAATCAACACTTGTTGTCTCAAGTGGTGTATTAGCTAGTAATGTTAGGTCCCAATTATATAGAAGAAGATTGGGCTAGCTACAAGTACAATAGCATGGTTATGATTATGCAGCTTTTTTTGTGAGACTTATTTTATATTATTATTATGATTATATCTTAAGTGATATTTATTGGTGTACCATAAGAATTATAGAATGTTCAAGTCATCTAATCCAAGGCCAACTTGGCGTTTGAATGGGCTATTATACTAAAGCAATCTC</gDNA_template>
            <first_frame> L  M  Y  T  F  *  I  M  L  C  M  A  F  E  L  N  Y  E  K  K  I  D  L  K  R  T  K  R  A  K  N  F  L  H  Y  A  K  L  K  *  N  A  P  V  N  S  L  V  Q  K  Y  *  C  S  *  *  I  L  D  Q  T  I  D  A  V  Y  R  F  I  Q  F  C  I  G  D  T  V  G  V  *  Q  Q  Q  V  L  G  *  R  D  *  P  L  E  K  I  P  L  Y  K  *  K  S  I  L  S  K  L  Y  T  L  H  F  L  S  *  L  H  T  K  L  L  Q  W  L  G  K  *  A  L  S  C  L  F  F  W  W  F  S  *  L  K  I  R :   F  Q  G  P  T  L  C  V  M  S  S  S  N  N  R  E  I  T  N  C :   M  V  L  V  R  E  D  S  I  L  K  :  I  V  N  Q  N  A  R  T  G  V  Q  R  H  R  I  R  S  R  V  C  F  S  A  R  N  A  V  Q  S  V  C  V  F  L  L  V  P  M  A  I  S  K  V  A  L  A  T  I  T  G  R  P  K  E  V  A  Q  S  A  H  D  H  P  Y  C  I  K  M  *  L  Q  T  P  N  F  C  Q  I  *  *  Y  *  L  I  N  Q  H  L  L  S  Q  V  V  Y  *  L  V  M  L  G  P  N  Y  I  E  E  D  W  A  S  Y  K  Y  N  S  M  V  M  I  M  Q  L  F  L  *  D  L  F  Y  I  I  I  M  I  I  S  *  V  I  F  I  G  V  P  *  E  L  *  N  V  Q  V  I  *  S  K  A  N  L  A  F  E  W  A  I  I  L  K  Q  S  </first_frame>
            <second_frame>  *  C  I  L  F  R  L  C  Y  V  W  L  L  N  *  T  M  R  K  K  L  T  *  N  E  Q  K  G  Q  K  T  S  Y  T  M  R  N  *  N  K  M  L  R  L  I  V  W  S  K  N  I  D  A  V  N  R  F  W  T  K  L  S  M  L  C  I  D  L  F  N  F  A  *  G  I  L  L  E  C  D  N  S  K  C  *  A  K  E  I  N  H  L  R  R  S  L  S  I  N  R  S  R  F  S  Q  S  S  T  H  F  T  S  S  L  S  F  T  Q  N  Y  Y  N  G  W  E  N  E  H  C  L  V  C  S  F  G  G  F  P  D  S  K  S   : G  F  K  G  Q  H  Y  A  *  *  A  A  A  T  T  E  K  *  P  T   : V  W  C  *  *  G  K  T  P  S  S  R :   L  S  T  K  M  H  V  P  V  F  K  D  I  V  *  E  A  V  Y  V  F  L  P  E  M  L  C  K  V  F  V  C  S  C  W  Y  L  W  Q  *  A  K  L  P  L  L  Q  *  L  E  D  Q  K  R  W  P  K  V  P  M  I  I  H  I  V  L  K  C  D  C  R  H  P  T  S  V  K  S  S  S  I  N  *  L  I  N  T  C  C  L  K  W  C  I  S  *  *  C  *  V  P  I  I  *  K  K  I  G  L  A  T  S  T  I  A  W  L  *  L  C  S  F  F  C  E  T  Y  F  I  L  L  L  *  L  Y  L  K  *  Y  L  L  V  Y  H  K  N  Y  R  M  F  K  S  S  N  P  R  P  T  W  R  L  N  G  L  L  Y  *  S  N  L </second_frame>
            <third_frame>   N  V  Y  F  L  D  Y  A  M  Y  G  F  *  T  E  L  *  E  K  N  *  L  E  T  N  K  K  G  K  K  L  L  T  L  C  E  I  E  I  K  C  S  G  *  *  F  G  P  K  I  L  M  Q  L  I  D  F  G  P  N  Y  R  C  C  V  *  I  Y  S  I  L  H  R  G  Y  C  W  S  V  T  T  A  S  A  R  L  K  R  L  T  T  *  E  D  P  S  L  *  I  E  V  D  S  L  K  A  L  H  T  S  L  P  L  L  A  S  H  K  I  T  T  M  A  G  K  M  S  I  V  L  F  V  L  L  V  V  F  L  T  Q  N  Q  :  V  S  R  A  N  I  M  R  D  E  Q  Q  Q  Q  Q  R  N  N  Q  L  :  Y  G  V  S  E  G  R  L  H  P  Q   : D  C  Q  P  K  C  T  Y  R  C  S  K  T  S  Y  K  K  P  C  M  F  F  C  Q  K  C  C  A  K  C  L  C  V  P  A  G  T  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  K  R  G  G  P  K  C  P  *  S  S  I  L  Y  *  N  V  T  A  D  T  Q  L  L  S  N  L  V  V  L  I  N  *  S  T  L  V  V  S  S  G  V  L  A  S  N  V  R  S  Q  L  Y  R  R  R  L  G  *  L  Q  V  Q  *  H  G  Y  D  Y  A  A  F  F  V  R  L  I  L  Y  Y  Y  Y  D  Y  I  L  S  D  I  Y  W  C  T  I  R  I  I  E  C  S  S  H  L  I  Q  G  Q  L  G  V  *  M  G  Y  Y  T  K  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0214B22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30190" stop="30059"/>
                    <exon start="29940" stop="29881"/>
                    <exon start="29790" stop="29757"/>
                    <exon start="29630" stop="29449"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEVDSLKALHTSLPLLASHKITTMAGKMSIVLFVLLVVFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30101" PGL_stop="30485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30101" e_stop="30485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30101" e_stop="30485" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30101" stop="30485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGCTCATTTTCCCAGCCATTGTAGTAATTTTGTGTGAAGCTAAGAGAGGAAGTGAAGTGTGTAGAGCTTTGAGAGAATCGACTTCTATTTATAGAGAGGGATCTTCTCAAGTGGTTAATCTCTTTAGCCTAGCACTTGCTGTTGTCACACTCCAACAGTATCCCCTATGCAAAATTGAATAAATCTATACACAGCATCGATAGTTTGGTCCAAAATCTATTAACTGCATCAATATTTTTGGACCAAACTATTAACCGGAGCATTTTATTTCAATTTCGCATAGTGTAAGAAGTTTTTTGCCCTTTTTGTTCGTTTCAAGTCAATTTTTTTCTCATAGTTCAGTTCAAAAGCCATACATAGCATAATCTAAAAAGTATACATTA</gDNA_template>
            <first_frame> N  A  H  F  P  S  H  C  S  N  F  V  *  S  *  E  R  K  *  S  V  *  S  F  E  R  I  D  F  Y  L  *  R  G  I  F  S  S  G  *  S  L  *  P  S  T  C  C  C  H  T  P  T  V  S  P  M  Q  N  *  I  N  L  Y  T  A  S  I  V  W  S  K  I  Y  *  L  H  Q  Y  F  W  T  K  L  L  T  G  A  F  Y  F  N  F  A  *  C  K  K  F  F  A  L  F  V  R  F  K  S  I  F  F  S  *  F  S  S  K  A  I  H  S  I  I  *  K  V  Y  I  </first_frame>
            <second_frame>  M  L  I  F  P  A  I  V  V  I  L  C  E  A  K  R  G  S  E  V  C  R  A  L  R  E  S  T  S  I  Y  R  E  G  S  S  Q  V  V  N  L  F  S  L  A  L  A  V  V  T  L  Q  Q  Y  P  L  C  K  I  E  *  I  Y  T  Q  H  R  *  F  G  P  K  S  I  N  C  I  N  I  F  G  P  N  Y  *  P  E  H  F  I  S  I  S  H  S  V  R  S  F  L  P  F  L  F  V  S  S  Q  F  F  S  H  S  S  V  Q  K  P  Y  I  A  *  S  K  K  Y  T  L </second_frame>
            <third_frame>   C  S  F  S  Q  P  L  *  *  F  C  V  K  L  R  E  E  V  K  C  V  E  L  *  E  N  R  L  L  F  I  E  R  D  L  L  K  W  L  I  S  L  A  *  H  L  L  L  S  H  S  N  S  I  P  Y  A  K  L  N  K  S  I  H  S  I  D  S  L  V  Q  N  L  L  T  A  S  I  F  L  D  Q  T  I  N  R  S  I  L  F  Q  F  R  I  V  *  E  V  F  C  P  F  C  S  F  Q  V  N  F  F  L  I  V  Q  F  K  S  H  T  *  H  N  L  K  S  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0214B22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 56528 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 2018 bytes was the average size of a spliced alignment
$ 11824 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1970 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:02:02
-->
