<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:04:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602761" ref_strand="+" ref_description="SGN-U602761 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348119|emb|CAO22829.1| (e_value=1e-77) unnamed; (*ATH) AT5G03260.1 (e_value=5e-78) | Symbol: None | laccase, putative / diphenol oxidase, putative, similar to laccase (Pinus taeda)(GI:13661207) | chr5:777020-779423 REVERSE | Aliases: F15A17.290, F15A17_290; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=4e-77) Laccase-11 OS=Arabidopsis thaliana GN=LAC11; ">
      <seq>gagcagattgtgcaatgcaaaacaaatggttacagtaaatggcggatttccagggccaactatatatgctagagaaggagatagagttcaaatcaatgttactaactatgtacaatataacttgtccatccattggcatggtttgaaacaatatcgtaatggttgggcagacggtccagcttacataactcaatgccctatccagacaggaaatagctatgtttatgatttcaatgtaacaggacaaagaggaaccttatggtggcatgcacatattctttggctaagggcaactgtctatggtgcaatagtgataatgccacaaaaaggcactcccttcccttttcctcaaccagatagggaagaagtactcgtactaggggaatggtggaatgctgatgttgaagcagttgagaaacaaggaaatgcattgggtattcctcctaatatgtctgatgctcacacgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="2465" stop="3743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2765" g_stop="2899" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2900" i_stop="2985" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2986" g_stop="3230" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="380" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3231" i_stop="3351" i_length="121">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3352" g_stop="3443" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="472" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-U602761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2765" e_stop="2899"/>
          <exon e_start="2986" e_stop="3230"/>
          <exon e_start="3352" e_stop="3443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGATTGTGCAATGCAAAACAAATGGTTACAGTAAATGGCGGATTTCCAGGGCCAACTATATATGCTAGAGAAGGAGATAGAGTTCAAATCAATGTTACTAACTATGTACAATATAACTTGTCCATCCATTGGTAAGATAAAATTAGAAGTAGATGAAAATTGAAGTCTCTCAACTTTCAGATGCTGAAACAGAATGTTTTTGTTCTAATTCTTGTAGGCATGGTTTGAAACAATATCGTAATGGTTGGGCAGACGGTCCAGCTTACATAACTCAATGCCCTATCCAGACAGGAAATAGCTATGTTTATGATTTCAATGTAACAGGACAAAGAGGAACCTTATGGTGGCATGCACATATTCTTTGGCTAAGGGCAACTGTCTATGGTGCAATAGTGATAATGCCACAAAAAGGCACTCCCTTCCCTTTTCCTCAACCAGATAGGGAAGAAGTACTCGTACTAGGTGAGCGTTGGCACTCGTTAATATACATAGAATTTCACCACCATAATTTCTTGAACTTCTCTTGTAGCAAAGAATGAAAGAAATTAAATGACAGCAATGCTTCTATCTGATTGTGATGCAGGGGAATGGTGGAATGCTGATGTTGAAGCAGTTGAGAAACAAGGAAATGCATTGGGTATTCCTCCTAATATGTCTGATGCTCACACGATCAAT</genome_strand>
        <mrna_strand>GAGCAGATTGTGCAATGCAAAACAAATGGTTACAGTAAATGGCGGATTTCCAGGGCCAACTATATATGCTAGAGAAGGAGATAGAGTTCAAATCAATGTTACTAACTATGTACAATATAACTTGTCCATCCATTG......................................................................................GCATGGTTTGAAACAATATCGTAATGGTTGGGCAGACGGTCCAGCTTACATAACTCAATGCCCTATCCAGACAGGAAATAGCTATGTTTATGATTTCAATGTAACAGGACAAAGAGGAACCTTATGGTGGCATGCACATATTCTTTGGCTAAGGGCAACTGTCTATGGTGCAATAGTGATAATGCCACAAAAAGGCACTCCCTTCCCTTTTCCTCAACCAGATAGGGAAGAAGTACTCGTACTAG.........................................................................................................................GGGAATGGTGGAATGCTGATGTTGAAGCAGTTGAGAAACAAGGAAATGCATTGGGTATTCCTCCTAATATGTCTGATGCTCACACGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598406" ref_strand="+" ref_description="SGN-U598406 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157347523|emb|CAO18160.1| (e_value=4e-51) unnamed; (*ATH) AT5G03260.1 (e_value=2e-49) | Symbol: None | laccase, putative / diphenol oxidase, putative, similar to laccase (Pinus taeda)(GI:13661207) | chr5:777020-779423 REVERSE | Aliases: F15A17.290, F15A17_290; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=2e-48) Laccase-11 OS=Arabidopsis thaliana GN=LAC11; ">
      <seq>cttaggttggctgtaaggggtgcccctgtaaaattgaatggagtaggtggtttgtctgggaaatctggagtgtacacacccttaatgttgaagtaatgagactgaagaagtgcagtttgtggcatgataaaggaaatgttgttcagagatgctgtaagcctagttccatttagacaggtgggacaaggattaattcctaggccaactgtaaacaagaggtgtcgatcaacatttaggggaacgtttgctggatatttgggagtatttaggcttttgagtttaaagttatagctcaaagcaaagtctgagtcattttgtgcaggcaaggtaggaagttttggaatcacggtttctgggattcccttgtactggaaaatagcagtggcagtcttgttatccacactgattggagcatccatgaaggcccttgcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="4543" stop="3508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4243" g_stop="3808" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-U598406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4243" e_stop="3808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCACACTGATTGGAGCATCCATGAAGGCCCTTGCAGCCA</genome_strand>
        <mrna_strand>CTTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCACACTGATTGGAGCATCCATGAAGGCCCTTGCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585203" ref_strand="+" ref_description="SGN-U585203 Tomato 200607#2 [39 ESTs aligned] (*GB) gi|157348118|emb|CAO22828.1| (e_value=2e-123) unnamed; (*ATH) AT5G66530.1 (e_value=1e-116)  Symbol: None | aldose 1-epimerase family protein, similar to apospory-associated protein C; APOC (Chlamydomonas reinhardtii) GI:6970044; contains Pfam profile PF01263: Aldose 1-epimerase | chr5:26570973-26572902 REVERSE | Aliases: K1F13.19, K1F13_19... ; (*SWP) sp|Q40784|AAPC_CENCI (e_value=1e-29) Putative apospory-associated protein C OS=Cenchrus ciliaris; ">
      <seq>gattcgaacttattgtagaggcacaatatccagtttaagtagttcagtggacaacaaggactgcacagagcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatccaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5283" stop="10270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5582" g_stop="5799" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="305" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="416" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="468" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="606" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="705" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="803" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="911" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9314" g_stop="9395" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="912" r_stop="993" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9634" g_stop="9970" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1330" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-U585203" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5582" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9395"/>
          <exon e_start="9634" e_stop="9970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTT</genome_strand>
        <mrna_strand>GATTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594660" ref_strand="+" ref_description="SGN-U594660 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348116|emb|CAO22826.1| (e_value=5e-41) unnamed; (*ATH) AT2G18245.1 (e_value=5e-30) | Symbol: None | expressed protein | chr2:7944369-7946680 FORWARD | Aliases: None; ">
      <seq>gaataacaaagtcgcaaatcctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatgagcggttgacgaagataattactgtccttgtcaagaaccagccttcctgtcttcagctatatctttacagtacagctgacaaggtcattcaaatcagtcagttgaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15499" stop="12866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15200" g_stop="14751" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14750" i_stop="14446" i_length="305">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="553" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13439" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="762" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13277" g_stop="13166" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="873" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-U594660" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15200" e_stop="14751"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13439"/>
          <exon e_start="13277" e_stop="13166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTT</genome_strand>
        <mrna_strand>GAATAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG.................................................................................................................................................................................................................................................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATT-CAAATCAGTCAGTTGAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585443" ref_strand="+" ref_description="SGN-U585443 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157348116|emb|CAO22826.1| (e_value=6e-74) unnamed; (*ATH) AT2G18245.1 (e_value=3e-60) | Symbol: None | expressed protein | chr2:7944369-7946680 FORWARD | Aliases: None; ">
      <seq>gcctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatgagcgattgaaaaagataattactgtccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15481" stop="13138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15182" g_stop="14541" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14540" i_stop="14446" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="745" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13439" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="954" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13277" g_stop="13248" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="955" r_stop="984" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-U585443" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>984</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15182" e_stop="14541"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13439"/>
          <exon e_start="13277" e_stop="13248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGT</genome_strand>
        <mrna_strand>GCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGATTGAAAAAGATAATTACTGTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595644" ref_strand="+" ref_description="SGN-U595644 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118484220|gb|ABK93990.1| (e_value=8e-16) unknown; (*ATH) AT1G01050.1 (e_value=3e-12)  Symbol: None | inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative, strong similarity to SP:Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Sol... ; (*SWP) sp|Q0DYB1|IPYR_ORYSJ (e_value=3e-13) Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP; ">
      <seq>cagctctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctagagattgggccaggtgcaccttcagttttcaactgtgtaagtgtttaagtgccagtaattcttttctgaaattatttgataaggtacttaagttactccgacaaccataaccttcttatctggctgtatttgtccacttcttttttgttagtagtgattttcattctttccagaagatcatttattaagttcaaagcaaaggtgtttcaatatatgtatactggtttactctttttgtttatctagtcaatagtggtctttgaatatttctacagttctcaactggaaatatataacaatgattggcagtttcacatacaggaaaaaaattctaatgatatattcctacctgctatctcacacgggcttgcacacccattattatctctgtgatagttgtgattatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="26557" stop="27901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="145" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27199" g_stop="27601" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="548" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-U595644" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGT</genome_strand>
        <mrna_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATGTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595646" ref_strand="+" ref_description="SGN-U595646 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118484220|gb|ABK93990.1| (e_value=6e-16) unknown; (*ATH) AT1G01050.1 (e_value=1e-12)  Symbol: None | inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative, strong similarity to SP:Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Sol... ; (*SWP) sp|Q0DYB1|IPYR_ORYSJ (e_value=2e-13) Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP; ">
      <seq>cagctctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctagagattgggccaggtgcaccttcagttttcaactgtgtaagtgtttaagtgccagtaattcttttctgaaattatttgataaggtacttaagttactccgacaaccataacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="26557" stop="27604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="145" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27199" g_stop="27304" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="251" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-U595646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCT</genome_strand>
        <mrna_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566773" ref_strand="+" ref_description="SGN-U566773 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147856360|emb|CAN79636.1| (e_value=5e-124) hypothetical; (*ATH) AT1G19580.1 (e_value=5e-118) | Symbol: None | bacterial transferase hexapeptide repeat-containing protein, contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) | chr1:6774754-6777438 FORWARD | Aliases: None; (*SWP) sp|Q9FMV1|UMP7_ARATH (e_value=7e-30) Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510; ">
      <seq>ggttaaaacgagagcactcaataggagtcggggtttgggttcagctcacttcaccttttgccctttgtggtatcaacgctcctcatttctcaactcctcagctaaataatcaaacaaatatacgtttgaatttggagaaatccggttgtggaatcggaagcaatagaggatgggttcggcgatgaaagcaatctacaccgttggattctggatccgtgagacaggccaagcccttgatcggttgggctgccgcctccagggaaactattacttccaagaacacctctcgaggcatagaactttgatgaacctgtttgacaaagtaccagttgttgagaaagatgcatttgtggccccaagtgcctctataattggtgatgttcacattggtcgtagtgcttctatttggtatgggtgtgttctgcgaggtgatgtgaacagtgtcagcattggagccggaactaatgtccaggacaattctctaatccatgtagctaaatcgaatatcagtggaaaggttttgcctacgataattggcaaaaatgttaccataggtcatagcgctgtgttacatggatgtactgttgaagacgaggcatttattggtatgggtgcaaccgtgcttgatggagctgttgtggagaaaaatgctatggtcgctgctggtgcccatgtaagacagaatacaaggattccattcggagaggtctggggaggaaatccagcgaggttcttgaggaagctcacagaagaagaaatagcgttcatctcagagtcagccgcaaactattctaatttagcgcaggttcatgcagctgaaaatgcaaaagagttggataagattgaatttgagaaggtgctgcgaaagaaactagcgcgcaaggatgaggagtatgactctatgttgggtgttagtgaaacacctccagagcttgtcctgcctgatagtagcctaccagacaaggcaccaaaggcctcctaagtgtggtttccatctggggtatcctgggattttgtgatgttattgggtaactcttttttgttttgggcggattaacgtcaaaatgcctgtgattagtttccaataattaaggccaagctgaaatatcaaagtttaatacgggtatgcagctgtagcatttttctacttatcatgtctggctgatcagtcttttgatgttcttgaaaaaacaaggttacactagagcttatatttgtctgtttaagcaatatgagaaacttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="30505" stop="36347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30804" g_stop="31087" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32478" g_stop="32621" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="428" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34770" g_stop="34895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="554" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34988" g_stop="35139" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="706" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35140" i_stop="35507" i_length="368">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35508" g_stop="36047" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="1246" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-U566773" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30804" e_stop="31087"/>
          <exon e_start="32478" e_stop="32621"/>
          <exon e_start="34770" e_stop="34895"/>
          <exon e_start="34988" e_stop="35139"/>
          <exon e_start="35508" e_stop="36047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAAACGAGAGCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACCGTACGTCTCTTCTTTCTCCTCACTTCTTCACATCTATCACCTTTAAACATGTTATGTTTTCATATAACCCACAATTAGGGCTTTAGCTATTTGAACGATACACATTAGTTCAAGTCACAGAACGCTTTCAATTGTATAAATTCATTAGGCTTCGTTCTGCCATTTCTATTTAGCTGCATTTTCTGCACTCTGTTGTCTGAACATTAATTTTATTAGCTCAGATAGCACCGTGAAGGTGACATTTCAATGTTTGATGACAAGTAGTGAAGTTTTAGTTTTTTTTTGAGCTGCATAGAGCTATTAGCATCTGACTATCTCTTATTAGGGGATAATCCTTTCTTGATAAATGTCGACTTATGTAGAGTAATTTTTCTCTTGTCTATTTCCCTTTAAAATCTACGAATGGATACTTTCCCTTTTAGTTTCAGGAAAAAGAATGTTGTTATATTGATAAATAAAGTAAAACGACCGCTTCGTAAAGCTAGAAAGAATTAAGTGACATCAAATTTCATTGGCATTTTATATTTTCTCCATTCCAAACAGTCATTCAATGCTCTAACTTTGAAAGTGTAGTTTCAAAGTAATTTTCCTGATTATCGGTCTCAAGGAGATGGATTGGTGGTTGCGGCATAAAATAACAACCTAGAGATCTTAGGTATGAATTCCCCTTTGACGCTTAGTATGAACTTACTTCACAACCTTGGTGCACAAGGATTTCCTGTCACTTGTGGTTGTGGGCTGTAGTAGGGCGCTGTAGTTGAAGTTACAATTTTTTGCTTAAGAAAAATAAGGTCGATTACAAGTATTGTTGATTCAAGGTTATCAAGAGTGATGAGTGATCATGTAGGGTTGTTAATTTGAAGGCTGCTCATGATACTTAGTACTTATAGCATGGTATTACTATGACATATATGATCTATCTTACAATATGTCTAACAACAATCCGAGAGCTAGATTATTAATTCTGATCTCACCCAGTTCTCATTAACCATGCCCGCAACATTGTGACTAGCATAAGTAGCTCGGGTCAATTTTGATGAATTATTAGTCTATAAATATTTTCATCTGGGTGAGTCACTGAGGCTTGGGATCTTTGACAAGCATTCCACCGGTGTCGATTGTGATGATCTTAGTTACATTCATATTTATTCACAATCAGCCAATCTCACCATCTTAGGTTCTGTTCTCTATGTTTGGCTGTACTTCTAGAATTATTTCCTAGTCTTCTACTCATTCCTGTGTTCTGTTGTTATATGGTTTTCCTCTTTATGTCAAACCACATATTTTTTATTTCATGTCTAAACTTATTGGTTGTTGATGTGCTTTCTCCAATATGCAGCATGCCTTCTTGCTTTAACGTTTTTTATTCTCTACCTCTTTTTTATTCCAGTCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAGGTATGTTTTGCTTCTGCATATGATGGTAGTGTCAGTGCTGCTTTATTAAAAAAAGGTAGTGTCAGTGCTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTTAAGGTGTACCCGAACACCAGTTGTGAACAATAATATCGGGCTTTATAAAAGATACAAGACTCAATTAATTTGGACGAATCTGAACTGAATAAGTCTCTTGAATTGGAATATGAAAAAATTGGTTGAAAGAACCCAATAGAAATTGGCATTGAGGAATGAGGATTGGCACTGAGGATATCTGGACAAGTCTGCACTTGAGCAGAAGGTCTTTCAAAAACAACCTCTCTACCTCCACTAGGTAGGGGTAAGGTTTGCGTACCCTCCCCAGATCTCACTTGTGGTTTTACATTGGGTATGTTGTTGTTGTTATGTACTTAGTTTTAACAATTCAAAAAAATAATTTAAAGAAATGATGTAGGCCATTTATGCTTTTACGATCTAAATATGACTTAAGATTTTGGGGTTTGTGATAAACTTAATGTGTAGATCTCAACGAAACTCAAAGTTGTGGACTCATGGTACGATCATTCTTAATTTTGAGAACTTCTAGCTATCAAGAGTACTATGCTACTCTTTGACGAGTTAAGAATTGTATTGAAAACTTCATGTATAGCACAAGCGAAGACTGGCAGCACTTGATAAATATAGTTTTTTCCCTAATCCCTATATAACAATCATAATCTATATATGTTTTTTAAAAGTGACGGTGGTTTCATTACAACTTACATGTACATTCATGAGTGATGACAAAGGTGAGTTTCATTTTAGAAGAGAAATTAGTAAACTTTTCTGTTGCAGCGAAAACATGTTTTTCTCTAAAAATAAAATTTGTCAAATAATTCTCTTTTTTGAATATTGATCTTTGAGAGGATGTTCACGTATGAAAAGGTCAAATTTGTGAAATAAAAGATTGCTATAGGACTATTTATCAGACAATTATCTGCTTCCACCCAATGGTATTATTAGAAATATCAAATTAGATTGGACCTGATAACTTGGGCTCATTCAAAGTTGAAACTTATATTATTTGTTCAGGGACAAGACACAAAGCCCAAACATGCCTTCACTCAGGCAACTCTACTTTTGACTTACTCCACAAGCACTACTCCTTGAATCTCTTTATTGTAATGTTATCTATTGAAAGCTCAATCTACAACTTAGCCGACTGAAATTTCGAGCAAATTTTGGTTTATGCACACTCATGGCAGCCTTTAAATGAAATACTTTGGAAGTATGTGTCTTTCTTAATGCATATTGCCAACGATATTTGACTGAGTGAATATGCTCCCACACGTACAGTATTGAATAAAGTTTTGTTCCTTCTTCCTTGGTTATAAAACTTACATTGCGCCTCTTATAATATCACCTTGTCCTATCTTAGCTTCCTTAAGGGCAAGAATATGAGTTCTGCATTGGGCTCTAATTCTGTTAAGAAGTTTGGGCTTCAACCAAACTATGATTGCATAGTGTTTTTCCTTTTTGTGTGTGTGGAGTTCCCTGGATGTTTGTGCTCTTTAGTTTTCTTGTTCTTTCTCAACATGAAACTCCGTGCAGGTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAGGTGAGAAATTTCTGGCAATTTAGAGCATAATATACATCTGCCATTAATTTTTGAGTTGGCTTGATGGTTGACTTTTGACATCAAAAAATAAGGTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAGGTTTGTGGCAGACTTAAGTCACTCATTTTGCCATTATTGGGGTTTTTGCGCATGTGTACAAGTTCCTACATGGGTATTTACCAATTGGTGAAAAAAATATTATTTGTTCATACTGATGCTAGTTTCCATGTTAATCTTTAGTAAGTTGTTTAACCTCCCTATTATACACTTGTGAAACTGTGCATGTAACTGTTGACAAATGGACGAAGATTTGTTAGGATGTGGACTGATACAAGGAATTCCCAAAGAAAAGCCCGTCCCTTCCCTAGTTGTCTTGTATTCTAGCTTGTTATGAAATATGTAGTGAATTTTTTCGTTGCAAATTTCAACTTGCTCACATGTGTAATTATGACAACTAAAAAACACAGGTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGAAGCTCACAGAAGAAGAAATAGCGTTCATCTCAGAGTCAGCCGCAAACTATTCTAATTTAGCGCAGGTTCATGCAGCTGAAAATGCAAAAGAGTTGGATAAGATTGAATTTGAGAAGGTGCTGCGAAAGAAACTAGCGCGCAAGGATGAGGAGTATGACTCTATGTTGGGTGTTAGTGAAACACCTCCAGAGCTTGTCCTGCCTGATAGTAGCCTACCAGACAAGGCACCAAAGGCCTCCTAAGTGTGGTTTCCATCTGGGGTATCCTGGGATTTTGTGATGTTATTGGGTAACTCTTTTTTGTTTTGGGCGGATTAACGTCAAAATGCCTGTGATTAGTTTCCAATAATTAAGGCCAAGCTGAAATATCAAAGTTTAATACGGGTATGCAGCTGTAGCATTTTTCTACTTATCATGTCTGGCTGATCAGTCTTTTGATGTTCTTGAAAAAACAAGGTTACACTAGAGCTTATATTTGTCTGTTTAAGCAATATGAGAAACTTCACA</genome_strand>
        <mrna_strand>GGTTAAAACGAGAGCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAG............................................................................................GTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAG................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGAAGCTCACAGAAGAAGAAATAGCGTTCATCTCAGAGTCAGCCGCAAACTATTCTAATTTAGCGCAGGTTCATGCAGCTGAAAATGCAAAAGAGTTGGATAAGATTGAATTTGAGAAGGTGCTGCGAAAGAAACTAGCGCGCAAGGATGAGGAGTATGACTCTATGTTGGGTGTTAGTGAAACACCTCCAGAGCTTGTCCTGCCTGATAGTAGCCTACCAGACAAGGCACCAAAGGCCTCCTAAGTGTGGTTTCCATCTGGGGTATCCTGGGATTTTGTGATGTTATTGGGTAACTCTTTTTTGTTTTGGGCGGATTAACGTCAAAATGCCTGTGATTAGTTTCCAATAATTAAGGCCAAGCTGAAATATCAAAGTTTAATACGGGTATGCAGCTGTAGCATTTTTCTACTTATCATGTCTGGCTGATCAGTCTTTTGATGTTCTTGAAAAAACAAGGTTACACTAGAGCTTATATTTGTCTGTTTAAGCAATATGAGAAACTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599465" ref_strand="+" ref_description="SGN-U599465 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gttaaaacccttcttatagaagtatgcggctgttatactgattgattttgaaatatacattttttgtcgtggtaaaattttcctggagacatatgacgagtgtgagaaaagtattccttcttgtatcacaaaatatttgtcttttcttgaattatggtaatgggtagatatttcagagacaactgcattatggactcgtcaagctttatagttgaatcaacagtatgtcctatgccaaatctttatttataaaatgttgtttgttgatagttagctcagcatgtaaagattgcttattttatcgaaatgcagcattatgattttacttgtttttcagaactgataagtttgatatatatcatgcagtggtagttccctataagacaaagacagtagatattgctaatttcttgaaatacaacattataaggtcacatgccttgccgaacctggtagtcctgttgtttatgtcgtccagtagttcttatttgtaagacaagtagtaagactgagtgtacaatcttttctgcacatcataggtaattaagcctttcttctaatttagttacgatgtattaattcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="32390" stop="33575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32689" g_stop="33275" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-U599465" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32689" e_stop="33275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTT</genome_strand>
        <mrna_strand>GTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2765" PGL_stop="3443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2765" e_stop="2899"/>
            <exon e_start="2986" e_stop="3230"/>
            <exon e_start="3352" e_stop="3443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2765" e_stop="2899" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2900" i_stop="2985" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2986" e_stop="3230" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3231" i_stop="3351" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3352" e_stop="3443" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2765" stop="2899"/>
              <exon start="2986" stop="3230"/>
              <exon start="3352" stop="3443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAGATTGTGCAATGCAAAACAAATGGTTACAGTAAATGGCGGATTTCCAGGGCCAACTATATATGCTAGAGAAGGAGATAGAGTTCAAATCAATGTTACTAACTATGTACAATATAACTTGTCCATCCATTG : GCATGGTTTGAAACAATATCGTAATGGTTGGGCAGACGGTCCAGCTTACATAACTCAATGCCCTATCCAGACAGGAAATAGCTATGTTTATGATTTCAATGTAACAGGACAAAGAGGAACCTTATGGTGGCATGCACATATTCTTTGGCTAAGGGCAACTGTCTATGGTGCAATAGTGATAATGCCACAAAAAGGCACTCCCTTCCCTTTTCCTCAACCAGATAGGGAAGAAGTACTCGTACTAG : GGGAATGGTGGAATGCTGATGTTGAAGCAGTTGAGAAACAAGGAAATGCATTGGGTATTCCTCCTAATATGTCTGATGCTCACACGATCAAT</gDNA_template>
            <first_frame> E  Q  I  V  Q  C  K  T  N  G  Y  S  K  W  R  I  S  R  A  N  Y  I  C  *  R  R  R  *  S  S  N  Q  C  Y  *  L  C  T  I  *  L  V  H  P  L  :  A  W  F  E  T  I  S  *  W  L  G  R  R  S  S  L  H  N  S  M  P  Y  P  D  R  K  *  L  C  L  *  F  Q  C  N  R  T  K  R  N  L  M  V  A  C  T  Y  S  L  A  K  G  N  C  L  W  C  N  S  D  N  A  T  K  R  H  S  L  P  F  S  S  T  R  *  G  R  S  T  R  T  R :   G  M  V  E  C  *  C  *  S  S  *  E  T  R  K  C  I  G  Y  S  S  *  Y  V  *  C  S  H  D  Q  </first_frame>
            <second_frame>  S  R  L  C  N  A  K  Q  M  V  T  V  N  G  G  F  P  G  P  T  I  Y  A  R  E  G  D  R  V  Q  I  N  V  T  N  Y  V  Q  Y  N  L  S  I  H  W :   H  G  L  K  Q  Y  R  N  G  W  A  D  G  P  A  Y  I  T  Q  C  P  I  Q  T  G  N  S  Y  V  Y  D  F  N  V  T  G  Q  R  G  T  L  W  W  H  A  H  I  L  W  L  R  A  T  V  Y  G  A  I  V  I  M  P  Q  K  G  T  P  F  P  F  P  Q  P  D  R  E  E  V  L  V  L   : G  E  W  W  N  A  D  V  E  A  V  E  K  Q  G  N  A  L  G  I  P  P  N  M  S  D  A  H  T  I  N </second_frame>
            <third_frame>   A  D  C  A  M  Q  N  K  W  L  Q  *  M  A  D  F  Q  G  Q  L  Y  M  L  E  K  E  I  E  F  K  S  M  L  L  T  M  Y  N  I  T  C  P  S  I   : G  M  V  *  N  N  I  V  M  V  G  Q  T  V  Q  L  T  *  L  N  A  L  S  R  Q  E  I  A  M  F  M  I  S  M  *  Q  D  K  E  E  P  Y  G  G  M  H  I  F  F  G  *  G  Q  L  S  M  V  Q  *  *  *  C  H  K  K  A  L  P  S  L  F  L  N  Q  I  G  K  K  Y  S  Y  *  :  G  N  G  G  M  L  M  L  K  Q  L  R  N  K  E  M  H  W  V  F  L  L  I  C  L  M  L  T  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2766" stop="2899"/>
                    <exon start="2986" stop="3230"/>
                    <exon start="3352" stop="3443"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRLCNAKQMVTVNGGFPGPTIYAREGDRVQINVTNYVQYNLSIHWHGLKQYRNGWADGPAYITQCPIQTGNSYVYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPQKGTPFPFPQPDREEVLVLGEWWNADVEAVEKQGNALGIPPNMSDAHTIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4243" PGL_stop="3808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4243" e_stop="3808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4243" e_stop="3808" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4243" stop="3808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCACACTGATTGGAGCATCCATGAAGGCCCTTGCAGCCA</gDNA_template>
            <first_frame> L  R  L  A  V  R  G  A  P  V  K  L  N  G  V  G  G  L  S  G  K  S  G  V  Y  T  P  L  M  L  K  *  *  D  *  R  S  A  V  C  G  M  I  K  E  M  L  F  R  D  A  V  S  L  V  P  F  R  Q  V  G  Q  G  L  I  P  R  P  T  V  N  K  R  C  R  S  T  F  R  G  T  F  A  G  Y  L  G  V  F  R  L  L  S  L  K  L  *  L  K  A  K  S  E  S  F  C  A  G  K  V  G  S  F  G  I  T  V  S  G  I  P  L  Y  W  K  I  A  V  A  V  L  L  S  T  L  I  G  A  S  M  K  A  L  A  A  </first_frame>
            <second_frame>  L  G  W  L  *  G  V  P  L  *  N  *  M  E  *  V  V  C  L  G  N  L  E  C  T  H  P  *  C  *  S  N  E  T  E  E  V  Q  F  V  A  *  *  R  K  C  C  S  E  M  L  *  A  *  F  H  L  D  R  W  D  K  D  *  F  L  G  Q  L  *  T  R  G  V  D  Q  H  L  G  E  R  L  L  D  I  W  E  Y  L  G  F  *  V  *  S  Y  S  S  K  Q  S  L  S  H  F  V  Q  A  R  *  E  V  L  E  S  R  F  L  G  F  P  C  T  G  K  *  Q  W  Q  S  C  Y  P  H  *  L  E  H  P  *  R  P  L  Q  P </second_frame>
            <third_frame>   *  V  G  C  K  G  C  P  C  K  I  E  W  S  R  W  F  V  W  E  I  W  S  V  H  T  L  N  V  E  V  M  R  L  K  K  C  S  L  W  H  D  K  G  N  V  V  Q  R  C  C  K  P  S  S  I  *  T  G  G  T  R  I  N  S  *  A  N  C  K  Q  E  V  S  I  N  I  *  G  N  V  C  W  I  F  G  S  I  *  A  F  E  F  K  V  I  A  Q  S  K  V  *  V  I  L  C  R  Q  G  R  K  F  W  N  H  G  F  W  D  S  L  V  L  E  N  S  S  G  S  L  V  I  H  T  D  W  S  I  H  E  G  P  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0213A01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="5582" PGL_stop="9970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5582" e_stop="5799"/>
            <exon e_start="6025" e_stop="6111"/>
            <exon e_start="6835" e_stop="6945"/>
            <exon e_start="7204" e_stop="7255"/>
            <exon e_start="7547" e_stop="7684"/>
            <exon e_start="8184" e_stop="8282"/>
            <exon e_start="8614" e_stop="8711"/>
            <exon e_start="9098" e_stop="9205"/>
            <exon e_start="9314" e_stop="9395"/>
            <exon e_start="9634" e_stop="9970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.552" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="5582" e_stop="5799" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6025" e_stop="6111" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6835" e_stop="6945" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.552" acc_prob="0.963">
            <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7204" e_stop="7255" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7547" e_stop="7684" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8184" e_stop="8282" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.944">
            <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8614" e_stop="8711" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.954" acc_prob="0.918">
            <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9098" e_stop="9205" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.909" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9314" e_stop="9395" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9634" e_stop="9970" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5582" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG : ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG : TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG : TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG : CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG : ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC : GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG : AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA : TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG : ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTT</gDNA_template>
            <first_frame> Y  S  N  L  L  *  R  H  N  I  Q  F  K  *  F  S  G  Q  Q  G  L  H  R  A  I  K  R  E  L  Q  L  K  A  K  K  T  Y  F  L  Q  I  L  S  N  F  A  I  K  *  K  M  A  A  L  S  M  T  W  S  C  S  P  L  T  S  S  K  F  R  R  V  N  R :   Y  S  G  M  A  F  A  S  V  K  S  T  E  G  L  G  N  L  P  K  V  V  L  T  S  P  H  G  S :   E  A  E  L  Y  L  F  G  A  C  V  T  S  W  K  V  D  S  K  D  L  L  F  V  R  P  D  A  V  F  N  G  Q  K  P  I  S :   G  G  I  P  H  C  F  P  Q  F  G  P  G  P  I  Q  Q  :  H  G  F  G  R  N  M  N  W  S  L  V  S  S  E  S  V  K  E  K  P  V  V  T  V  E  L  R  D  G  P  Y  S  R  A  M  W  D  Y  S  F  H  A  L  Y  K  :  I  T  L  D  K  K  T  L  S  T  E  L  T  V  K  N  T  D  N  K  P  F  S  F  T  T  A  L  H  T  Y  F  S  :  A  S  V  T  G  A  S  V  N  G  L  K  G  C  K  T  L  N  K  V  P  D  P  T  N  P  V  E  G  K  E  E  R :   D  V  V  T  F  P  G  F  V  D  C  V  Y  L  D  A  P  N  E  L  H  L  D  N  G  L  G  D  K  I  S  I  K  N  T  N :   W  S  D  A  V  L  W  N  P  H  L  T  M  E  Q  S  Y  K  D  F  V  C  V  E  N  A  K  :  I  G  T  V  Q  L  E  P  E  Q  S  W  T  A  V  Q  H  L  T  V  A  *  R  Y  L  P  E  E  K  S  T  F  W  R  N  P  P  L  L  F  N  L  K  D  S  L  E  K  M  I  E  N  G  Y  T  K  *  R  I  M  L  Y  L  T  *  P  A  F  H  S  S  *  E  C  *  V  I  F  T  S  S  L  P  S  I  F  S  V  F  A  K  S  *  L  Y  K  V  N  D  M  K  V  Q  S  A  *  A  E  L  S  K  I  </first_frame>
            <second_frame>  I  R  T  Y  C  R  G  T  I  S  S  L  S  S  S  V  D  N  K  D  C  T  E  Q  *  K  E  N  F  S  *  K  Q  K  R  L  T  F  C  K  S  L  V  I  L  P  S  N  R  R  W  Q  H  C  L  *  P  G  L  A  L  P  *  P  P  Q  N  F  G  E  S  I   : D  I  Q  E  W  H  L  Q  V  *  N  L  L  K  G  W  G  I  Y  P  R  S  F  *  L  L  L  M  E   : V  R  L  S  Y  I  Y  L  E  L  V  S  H  L  G  K  *  T  V  K  I  Y  F  L  F  D  Q  M  L  Y  S  M  V  R  N  Q  S   : V  E  E  Y  H  I  V  S  H  N  L  D  L  A  Q  S  S  S :   T  D  L  E  G  T  *  I  G  P  L  L  A  L  K  V  *  R  R  N  L  L  L  L  W  S  *  G  M  G  L  I  A  V  Q  C  G  T  I  V  S  M  L  F  T  R :   S  L  L  I  R  R  P  C  Q  Q  N  S  Q  L  K  I  L  T  T  S  H  F  H  S  L  L  H  C  I  L  T  S  A :   L  L  *  Q  V  H  Q  L  M  V  *  K  V  A  K  L  *  T  R  F  L  I  P  Q  T  L  S  R  E  K  R  K   : E  M  W  *  H  F  L  D  L  W  T  V  F  I  L  M  H  L  M  S  Y  T  *  I  M  A  W  V  I  R  Y  L  S  K  T  P   : I  G  L  M  L  F  Y  G  T  L  I  *  P  W  N  K  A  I  K  I  L  F  V  L  K  M  P  R :   L  E  Q  C  S  L  N  Q  S  N  L  G  R  L  Y  N  I  *  L  L  L  K  D  T  S  R  K  R  N  Q  L  F  G  E  T  L  P  C  F  S  I  *  K  T  H  L  R  K  *  L  K  M  A  I  Q  N  K  E  *  C  C  I  *  H  D  L  H  F  I  A  V  K  S  V  K  *  Y  L  H  L  L  S  H  Q  S  S  L  Y  L  Q  N  P  N  C  T  R  *  T  I  *  R  C  K  V  H  K  L  N  Y  P  R  F </second_frame>
            <third_frame>   F  E  L  I  V  E  A  Q  Y  P  V  *  V  V  Q  W  T  T  R  T  A  Q  S  N  K  K  R  T  S  V  E  S  K  K  D  L  L  F  A  N  P  *  *  F  C  H  Q  I  E  D  G  S  I  V  Y  D  L  V  L  L  S  L  N  L  L  K  I  S  A  S  Q  S  :  I  F  R  N  G  I  C  K  C  E  I  Y  *  R  V  G  E  F  T  Q  G  R  F  D  F  S  S  W  K  :  *  G  *  A  I  S  I  W  S  L  C  H  I  L  E  S  R  Q  *  R  S  T  F  C  S  T  R  C  C  I  Q  W  S  E  T  N  Q  :  W  R  N  T  T  L  F  P  T  I  W  T  W  P  N  P  A   : A  R  I  W  K  E  H  E  L  V  P  C  *  L  *  K  C  E  G  E  T  C  C  Y  C  G  A  K  G  W  A  L  *  P  C  N  V  G  L  *  F  P  C  S  L  Q   : D  H  S  *  *  E  D  P  V  N  R  T  H  S  *  K  Y  *  Q  Q  A  I  F  I  H  Y  C  T  A  Y  L  L  Q   : R  F  C  N  R  C  I  S  *  W  F  K  R  L  Q  N  S  K  Q  G  S  *  S  H  K  P  C  R  G  K  R  G  K  :  R  C  G  D  I  S  W  I  C  G  L  C  L  S  *  C  T  *  *  V  T  P  R  *  W  L  G  *  *  D  I  Y  Q  K  H  Q  :  L  V  *  C  C  S  M  E  P  S  F  D  H  G  T  K  L  *  R  F  C  L  C  *  K  C  Q   : D  W  N  S  A  A  *  T  R  A  I  L  D  G  C  T  T  S  N  C  C  L  K  I  P  P  G  R  E  I  N  F  L  E  K  P  S  P  A  F  Q  F  K  R  L  T  *  E  N  D  *  K  W  L  Y  K  I  K  N  N  V  V  S  N  M  T  C  I  S  *  Q  L  R  V  L  S  D  I  Y  I  F  S  P  I  N  L  L  C  I  C  K  I  L  I  V  Q  G  K  R  Y  E  G  A  K  C  I  S  *  I  I  Q  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5729" stop="5799"/>
                    <exon start="6025" stop="6111"/>
                    <exon start="6835" stop="6945"/>
                    <exon start="7204" stop="7255"/>
                    <exon start="7547" stop="7684"/>
                    <exon start="8184" stop="8282"/>
                    <exon start="8614" stop="8711"/>
                    <exon start="9098" stop="9205"/>
                    <exon start="9314" stop="9395"/>
                    <exon start="9634" stop="9699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAALSMTWSCSPLTSSKFRRVNRYSGMAFASVKSTEGLGNLPKVVLTSPHGSEAELYLFGACVTSWKVDSKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGPIQQHGFGRNMNWSLVSSESVKEKPVVTVELRDGPYSRAMWDYSFHALYKITLDKKTLSTELTVKNTDNKPFSFTTALHTYFSASVTGASVNGLKGCKTLNKVPDPTNPVEGKEERDVVTFPGFVDCVYLDAPNELHLDNGLGDKISIKNTNWSDAVLWNPHLTMEQSYKDFVCVENAKIGTVQLEPEQSWTAVQHLTVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="15200" PGL_stop="13166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15200" e_stop="14751"/>
            <exon e_start="14445" e_stop="14343"/>
            <exon e_start="13647" e_stop="13439"/>
            <exon e_start="13277" e_stop="13166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.711" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="15200" e_stop="14751" e_length="450"/>
          </exon>
          <intron i_serial="1" don_prob="0.711" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14750" i_stop="14446" i_length="305"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14445" e_stop="14343" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13647" e_stop="13439" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="13277" e_stop="13166" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15200" stop="14751"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13439"/>
              <exon start="13277" stop="13166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTT</gDNA_template>
            <first_frame> K  K  Q  S  R  K  S  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C  Q  E  P  A  F  L  S  S  A  I  S  L  Q  Y  S  *  Q  G  H  S  N  S  V  S  *  I  F  </first_frame>
            <second_frame>  K  N  K  V  A  N  P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  S :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L  V  K  N  Q  P  S  C  L  Q  L  Y  L  Y  S  T  A  D  K  V  I  P  I  Q  S  V  E  S  F </second_frame>
            <third_frame>   K  T  K  S  Q  I  L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G   : V  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  S  R  T  S  L  P  V  F  S  Y  I  F  T  V  Q  L  T  R  S  F  Q  F  S  Q  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15199" stop="14751"/>
                    <exon start="14445" stop="14343"/>
                    <exon start="13647" stop="13439"/>
                    <exon start="13277" stop="13166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKVANPPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRSYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVLVKNQPSCLQLYLYSTADKVIPIQSVESF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15182" e_stop="14541"/>
            <exon e_start="14445" e_stop="14343"/>
            <exon e_start="13647" e_stop="13439"/>
            <exon e_start="13277" e_stop="13248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="15182" e_stop="14541" e_length="642"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14540" i_stop="14446" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14445" e_stop="14343" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13647" e_stop="13439" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="13277" e_stop="13248" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15182" stop="14541"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13439"/>
              <exon start="13277" stop="13248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGT</gDNA_template>
            <first_frame> S  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  V  Y  R  V  V  *  L  *  G  Y  S  R  S  N  I  C  C  F  C  E  R  C  S  F  F  R  S  W  Q  E  I  G  R  E  D  C  C  I  G  K  *  A  C  F  V  V  V  G  I  R  *  R  W  S  *  T  V  F  D  F  S  H  I  Q  *  Y  R  L  A  C  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C </first_frame>
            <second_frame>  P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  R  Y  I  E  L  Y  N  S  K  G  I  H  A  L  T  F  V  A  S  V  K  D  V  L  S  F  D  L  G  K  K  L  E  E  R  I  A  V  L  A  N  E  L  A  L  W  L  S  E  S  D  N  D  G  R  E  R  C  L  I  F  H  T  F  S  N  T  G  W  L  A :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L   </second_frame>
            <third_frame>   L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G  G  I  S  S  C  I  T  L  R  V  F  T  L  *  H  L  L  L  L  *  K  M  F  F  L  S  I  L  A  R  N  W  K  R  G  L  L  Y  W  Q  M  S  L  L  C  G  C  R  N  P  I  T  M  V  V  N  G  V  *  F  F  T  H  S  V  I  P  V  G  L   : L  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15181" stop="14541"/>
                    <exon start="14445" stop="14343"/>
                    <exon start="13647" stop="13439"/>
                    <exon start="13277" stop="13250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRRYIELYNSKGIHALTFVASVKDVLSFDLGKKLEERIAVLANELALWLSESDNDGRERCLIFHTFSNTGWLAYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26857" PGL_stop="27601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26857" e_stop="26992"/>
            <exon e_start="27199" e_stop="27601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.563" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26857" e_stop="26992" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.563" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="27199" e_stop="27601" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG : GGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGT</gDNA_template>
            <first_frame> L  N  M  A  E  N  S  G  K  A  I  G  R  N  S  G  T  S  R  V  A  L  N  E  R  I  L  S  S  M  S  R  K  S  I  A  A  H  P  W  H  D  L  E  I   : G  P  G  A  P  S  V  F  N  C  V  S  V  *  V  P  V  I  L  F  *  N  Y  L  I  R  Y  L  S  Y  S  D  N  H  N  L  L  I  W  L  Y  L  S  T  S  F  L  L  V  V  I  F  I  L  S  R  R  S  F  I  K  F  K  A  K  V  F  Q  Y  I  Y  T  G  L  L  F  L  F  I  *  S  I  V  V  F  E  Y  F  Y  S  S  Q  L  E  I  Y  N  N  D  W  Q  F  H  I  Q  E  K  N  S  N  D  I  F  L  P  A  I  S  H  G  L  A  H  P  L  L  S  L  *  *  L  *  L  F   </first_frame>
            <second_frame>  *  I  W  L  K  I  V  E  K  R  L  E  E  T  Q  E  P  P  V  L  R  L  M  K  E  F  F  P  P  C  H  E  N  L  L  L  L  I  H  G  M  T  *  R  L  :  G  Q  V  H  L  Q  F  S  T  V  *  V  F  K  C  Q  *  F  F  S  E  I  I  *  *  G  T  *  V  T  P  T  T  I  T  F  L  S  G  C  I  C  P  L  L  F  C  *  *  *  F  S  F  F  P  E  D  H  L  L  S  S  K  Q  R  C  F  N  I  F  I  L  V  Y  S  F  C  L  S  S  Q  *  W  S  L  N  I  S  T  V  L  N  W  K  Y  I  T  M  I  G  S  F  T  Y  R  K  K  I  L  M  I  Y  S  Y  L  L  S  H  T  G  L  H  T  H  Y  Y  L  C  D  S  C  D  Y  L  </second_frame>
            <third_frame>   K  Y  G  *  K  *  W  K  S  D  W  K  K  L  R  N  L  P  C  C  A  *  *  K  N  S  F  L  H  V  T  K  I  Y  C  C  S  S  M  A  *  P  R  D  W :   A  R  C  T  F  S  F  Q  L  C  K  C  L  S  A  S  N  S  F  L  K  L  F  D  K  V  L  K  L  L  R  Q  P  *  P  S  Y  L  A  V  F  V  H  F  F  F  V  S  S  D  F  H  S  F  Q  K  I  I  Y  *  V  Q  S  K  G  V  S  I  Y  L  Y  W  F  T  L  F  V  Y  L  V  N  S  G  L  *  I  F  L  Q  F  S  T  G  N  I  *  Q  *  L  A  V  S  H  T  G  K  K  F  *  *  Y  I  P  T  C  Y  L  T  R  A  C  T  P  I  I  I  S  V  I  V  V  I  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0213A01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30804" PGL_stop="36047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30804" e_stop="31087"/>
            <exon e_start="32478" e_stop="32621"/>
            <exon e_start="34770" e_stop="34895"/>
            <exon e_start="34988" e_stop="35139"/>
            <exon e_start="35508" e_stop="36047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.864" e_score="0.996"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="30804" e_stop="31087" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.864">
            <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32478" e_stop="32621" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34770" e_stop="34895" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.668">
            <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34988" e_stop="35139" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.987">
            <gDNA_intron_boundary i_start="35140" i_stop="35507" i_length="368"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35508" e_stop="36047" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30804" stop="31087"/>
              <exon start="32478" stop="32621"/>
              <exon start="34770" stop="34895"/>
              <exon start="34988" stop="35139"/>
              <exon start="35508" stop="36047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTAAAACGAGAGCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC : TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAG : GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAG : GTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAG : GTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGAAGCTCACAGAAGAAGAAATAGCGTTCATCTCAGAGTCAGCCGCAAACTATTCTAATTTAGCGCAGGTTCATGCAGCTGAAAATGCAAAAGAGTTGGATAAGATTGAATTTGAGAAGGTGCTGCGAAAGAAACTAGCGCGCAAGGATGAGGAGTATGACTCTATGTTGGGTGTTAGTGAAACACCTCCAGAGCTTGTCCTGCCTGATAGTAGCCTACCAGACAAGGCACCAAAGGCCTCCTAAGTGTGGTTTCCATCTGGGGTATCCTGGGATTTTGTGATGTTATTGGGTAACTCTTTTTTGTTTTGGGCGGATTAACGTCAAAATGCCTGTGATTAGTTTCCAATAATTAAGGCCAAGCTGAAATATCAAAGTTTAATACGGGTATGCAGCTGTAGCATTTTTCTACTTATCATGTCTGGCTGATCAGTCTTTTGATGTTCTTGAAAAAACAAGGTTACACTAGAGCTTATATTTGTCTGTTTAAGCAATATGAGAAACTTCACA</gDNA_template>
            <first_frame> C  *  N  E  S  T  Q  *  E  S  G  F  G  F  S  S  L  H  L  L  P  F  V  V  S  T  L  L  I  S  Q  L  L  S  *  I  I  K  Q  I  Y  V  *  I  W  R  N  P  V  V  E  S  E  A  I  E  D  G  F  G  D  E  S  N  L  H  R  W  I  L  D  P  *  D  R  P  S  P  *  S  V  G  L  P  P  P  G  K  L  L  L  P  R  T  P :   L  E  A  *  N  F  D  E  P  V  *  Q  S  T  S  C  *  E  R  C  I  C  G  P  K  C  L  Y  N  W  *  C  S  H  W  S  *  C  F  Y  L  V  W  V  C  S  A  R :   *  C  E  Q  C  Q  H  W  S  R  N  *  C  P  G  Q  F  S  N  P  C  S  *  I  E  Y  Q  W  K  G  F  A  Y  D  N  W  Q  K  C  Y  H  R :   S  *  R  C  V  T  W  M  Y  C  *  R  R  G  I  Y  W  Y  G  C  N  R  A  *  W  S  C  C  G  E  K  C  Y  G  R  C  W  C  P  C  K  T  E  Y  K  D  S  I  R  R   : G  L  G  R  K  S  S  E  V  L  E  E  A  H  R  R  R  N  S  V  H  L  R  V  S  R  K  L  F  *  F  S  A  G  S  C  S  *  K  C  K  R  V  G  *  D  *  I  *  E  G  A  A  K  E  T  S  A  Q  G  *  G  V  *  L  Y  V  G  C  *  *  N  T  S  R  A  C  P  A  *  *  *  P  T  R  Q  G  T  K  G  L  L  S  V  V  S  I  W  G  I  L  G  F  C  D  V  I  G  *  L  F  F  V  L  G  G  L  T  S  K  C  L  *  L  V  S  N  N  *  G  Q  A  E  I  S  K  F  N  T  G  M  Q  L  *  H  F  S  T  Y  H  V  W  L  I  S  L  L  M  F  L  K  K  Q  G  Y  T  R  A  Y  I  C  L  F  K  Q  Y  E  K  L  H  </first_frame>
            <second_frame>  V  K  T  R  A  L  N  R  S  R  G  L  G  S  A  H  F  T  F  C  P  L  W  Y  Q  R  S  S  F  L  N  S  S  A  K  *  S  N  K  Y  T  F  E  F  G  E  I  R  L  W  N  R  K  Q  *  R  M  G  S  A  M  K  A  I  Y  T  V  G  F  W  I  R  E  T  G  Q  A  L  D  R  L  G  C  R  L  Q  G  N  Y  Y  F  Q  E  H   : L  S  R  H  R  T  L  M  N  L  F  D  K  V  P  V  V  E  K  D  A  F  V  A  P  S  A  S  I  I  G  D  V  H  I  G  R  S  A  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  V  S  I  G  A  G  T  N  V  Q  D  N  S  L  I  H  V  A  K  S  N  I  S  G  K  V  L  P  T  I  I  G  K  N  V  T  I   : G  H  S  A  V  L  H  G  C  T  V  E  D  E  A  F  I  G  M  G  A  T  V  L  D  G  A  V  V  E  K  N  A  M  V  A  A  G  A  H  V  R  Q  N  T  R  I  P  F  G  E  :  V  W  G  G  N  P  A  R  F  L  R  K  L  T  E  E  E  I  A  F  I  S  E  S  A  A  N  Y  S  N  L  A  Q  V  H  A  A  E  N  A  K  E  L  D  K  I  E  F  E  K  V  L  R  K  K  L  A  R  K  D  E  E  Y  D  S  M  L  G  V  S  E  T  P  P  E  L  V  L  P  D  S  S  L  P  D  K  A  P  K  A  S  *  V  W  F  P  S  G  V  S  W  D  F  V  M  L  L  G  N  S  F  L  F  W  A  D  *  R  Q  N  A  C  D  *  F  P  I  I  K  A  K  L  K  Y  Q  S  L  I  R  V  C  S  C  S  I  F  L  L  I  M  S  G  *  S  V  F  *  C  S  *  K  N  K  V  T  L  E  L  I  F  V  C  L  S  N  M  R  N  F  T </second_frame>
            <third_frame>   L  K  R  E  H  S  I  G  V  G  V  W  V  Q  L  T  S  P  F  A  L  C  G  I  N  A  P  H  F  S  T  P  Q  L  N  N  Q  T  N  I  R  L  N  L  E  K  S  G  C  G  I  G  S  N  R  G  W  V  R  R  *  K  Q  S  T  P  L  D  S  G  S  V  R  Q  A  K  P  L  I  G  W  A  A  A  S  R  E  T  I  T  S  K  N  T  :  S  R  G  I  E  L  *  *  T  C  L  T  K  Y  Q  L  L  R  K  M  H  L  W  P  Q  V  P  L  *  L  V  M  F  T  L  V  V  V  L  L  F  G  M  G  V  F  C  E  :  V  M  *  T  V  S  A  L  E  P  E  L  M  S  R  T  I  L  *  S  M  *  L  N  R  I  S  V  E  R  F  C  L  R  *  L  A  K  M  L  P  *  :  V  I  A  L  C  Y  M  D  V  L  L  K  T  R  H  L  L  V  W  V  Q  P  C  L  M  E  L  L  W  R  K  M  L  W  S  L  L  V  P  M  *  D  R  I  Q  G  F  H  S  E  R :   S  G  E  E  I  Q  R  G  S  *  G  S  S  Q  K  K  K  *  R  S  S  Q  S  Q  P  Q  T  I  L  I  *  R  R  F  M  Q  L  K  M  Q  K  S  W  I  R  L  N  L  R  R  C  C  E  R  N  *  R  A  R  M  R  S  M  T  L  C  W  V  L  V  K  H  L  Q  S  L  S  C  L  I  V  A  Y  Q  T  R  H  Q  R  P  P  K  C  G  F  H  L  G  Y  P  G  I  L  *  C  Y  W  V  T  L  F  C  F  G  R  I  N  V  K  M  P  V  I  S  F  Q  *  L  R  P  S  *  N  I  K  V  *  Y  G  Y  A  A  V  A  F  F  Y  L  S  C  L  A  D  Q  S  F  D  V  L  E  K  T  R  L  H  *  S  L  Y  L  S  V  *  A  I  *  E  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30970" stop="31087"/>
                    <exon start="32478" stop="32621"/>
                    <exon start="34770" stop="34895"/>
                    <exon start="34988" stop="35139"/>
                    <exon start="35508" stop="35783"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMGSAMKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEHLSRHRTLMNLFDKVPVVEKDAFVAPSASIIGDVHIGRSASIWYGCVLRGDVNSVSIGAGTNVQDNSLIHVAKSNISGKVLPTIIGKNVTIGHSAVLHGCTVEDEAFIGMGATVLDGAVVEKNAMVAAGAHVRQNTRIPFGEVWGGNPARFLRKLTEEEIAFISESAANYSNLAQVHAAENAKELDKIEFEKVLRKKLARKDEEYDSMLGVSETPPELVLPDSSLPDKAPKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32689" e_stop="33275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="32689" e_stop="33275" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32689" stop="33275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTT</gDNA_template>
            <first_frame> L  K  T  L  L  I  E  V  C  G  C  Y  T  D  *  F  *  N  I  H  F  L  S  W  *  N  F  P  G  D  I  *  R  V  *  E  K  Y  S  F  L  Y  H  K  I  F  V  F  S  *  I  M  V  M  G  R  Y  F  R  D  N  C  I  M  D  S  S  S  F  I  V  E  S  T  V  C  P  M  P  N  L  Y  L  *  N  V  V  C  *  *  L  A  Q  H  V  K  I  A  Y  F  I  E  M  Q  H  Y  D  F  T  C  F  S  E  L  I  S  L  I  Y  I  M  Q  W  *  F  P  I  R  Q  R  Q  *  I  L  L  I  S  *  N  T  T  L  *  G  H  M  P  C  R  T  W  *  S  C  C  L  C  R  P  V  V  L  I  C  K  T  S  S  K  T  E  C  T  I  F  S  A  H  H  R  *  L  S  L  S  S  N  L  V  T  M  Y  *  F  F   </first_frame>
            <second_frame>  L  K  P  F  L  *  K  Y  A  A  V  I  L  I  D  F  E  I  Y  I  F  C  R  G  K  I  F  L  E  T  Y  D  E  C  E  K  S  I  P  S  C  I  T  K  Y  L  S  F  L  E  L  W  *  W  V  D  I  S  E  T  T  A  L  W  T  R  Q  A  L  *  L  N  Q  Q  Y  V  L  C  Q  I  F  I  Y  K  M  L  F  V  D  S  *  L  S  M  *  R  L  L  I  L  S  K  C  S  I  M  I  L  L  V  F  Q  N  *  *  V  *  Y  I  S  C  S  G  S  S  L  *  D  K  D  S  R  Y  C  *  F  L  E  I  Q  H  Y  K  V  T  C  L  A  E  P  G  S  P  V  V  Y  V  V  Q  *  F  L  F  V  R  Q  V  V  R  L  S  V  Q  S  F  L  H  I  I  G  N  *  A  F  L  L  I  *  L  R  C  I  N  S  F  </second_frame>
            <third_frame>   *  N  P  S  Y  R  S  M  R  L  L  Y  *  L  I  L  K  Y  T  F  F  V  V  V  K  F  S  W  R  H  M  T  S  V  R  K  V  F  L  L  V  S  Q  N  I  C  L  F  L  N  Y  G  N  G  *  I  F  Q  R  Q  L  H  Y  G  L  V  K  L  Y  S  *  I  N  S  M  S  Y  A  K  S  L  F  I  K  C  C  L  L  I  V  S  S  A  C  K  D  C  L  F  Y  R  N  A  A  L  *  F  Y  L  F  F  R  T  D  K  F  D  I  Y  H  A  V  V  V  P  Y  K  T  K  T  V  D  I  A  N  F  L  K  Y  N  I  I  R  S  H  A  L  P  N  L  V  V  L  L  F  M  S  S  S  S  S  Y  L  *  D  K  *  *  D  *  V  Y  N  L  F  C  T  S  *  V  I  K  P  F  F  *  F  S  Y  D  V  L  I  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0213A01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 18760 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2084 bytes was the average size of a spliced alignment
$ 12288 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2048 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:04:58
-->
