<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:01:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244074" ref_strand="+" ref_description="SGN-E244074 [cLEE-1-J14]">
      <seq>ttaggttggctgtaaggggtgcccctgtaaaattgaatggagtaggtggtttgtctgggaaatctggagtgtacacacccttaatgttgaagtaatgagactgaagaagtgcagtttgtggcatgataaaggaaatgttgttcagagatgctgtaagcctagttccatttagacaggtgggacaaggattaattcctaggccaactgtaaacaagaggtgtcgatcaacatttaggggaacgtttgctggatatttgggagtatttaggcttttgagtttaaagttatagctcaaagcaaagtctgagtcattttgtgcaggcaaggtaggaagttttggaatcacggtttctgggattcccttgtactggaaaatagcagtggcagtcttgttatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3844" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E244074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCA</genome_strand>
        <mrna_strand>TTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348770" ref_strand="+" ref_description="SGN-E348770 [cTOF-29-C12]">
      <seq>ttcgaacttattgtagaggcacaatatccagtttaagtagttcagtggacaacaaggactgcacagagcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5284" stop="7960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5584" g_stop="5799" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="303" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="414" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="466" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7660" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="580" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E348770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5584" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGAC</genome_strand>
        <mrna_strand>TTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328700" ref_strand="+" ref_description="SGN-E328700 [cTOC-23-E14]">
      <seq>agcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggntgcaaaactctaaacaagggtcctgatcccacaaaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5350" stop="8993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5650" g_stop="5799" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="237" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="400" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="538" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="637" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8693" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="717" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E328700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5650" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGT</genome_strand>
        <mrna_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGNTGCAAAACTCTAAACAAGGGTCCTGATCCCACAAAACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328090" ref_strand="+" ref_description="SGN-E328090 [cTOC-22-H21]">
      <seq>agcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctgtacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5350" stop="8583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5650" g_stop="5799" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="237" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="400" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="538" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="637" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E328090" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5650" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTGTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327937" ref_strand="+" ref_description="SGN-E327937 [cTOC-22-H19]">
      <seq>agcaataaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5350" stop="8583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5650" g_stop="5799" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="237" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="400" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="538" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="637" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E327937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5650" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202918" ref_strand="+" ref_description="SGN-E202918 [cLEB-1-D16]">
      <seq>gcacgaggagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5359" stop="8561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5654" g_stop="5799" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="233" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="344" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="396" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="534" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8261" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="612" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E202918" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5654" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACT</genome_strand>
        <mrna_strand>GCACGAGGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281532" ref_strand="-" ref_description="SGN-E281532 [cLEL-1-J23](-)">
      <seq>gcacgaggagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaccatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5359" stop="7242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5654" g_stop="5799" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="233" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6942" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="341" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E281532" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281532" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5654" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAAT</genome_strand>
        <mrna_strand>GCACGAGGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGACCATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746813" ref_strand="+" ref_description="SGN-E746813 [GI|47104469]">
      <seq>aaaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatccaagatttacgatggaacaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5356" stop="10288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5656" g_stop="5799" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="231" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="342" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="394" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="532" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="631" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="729" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="837" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9314" g_stop="9395" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="919" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9634" g_stop="9988" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1274" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1275" polyA_stop="1284"/>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E746813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1274</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5656" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9395"/>
          <exon e_start="9634" e_stop="9988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAA</genome_strand>
        <mrna_strand>AAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345713" ref_strand="+" ref_description="SGN-E345713 [cTOF-18-P9]">
      <seq>aaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaccctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5357" stop="8994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5657" g_stop="5799" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="230" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="341" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="393" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="531" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="630" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8694" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="710" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E345713" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5657" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTC</genome_strand>
        <mrna_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCAC-AACCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310063" ref_strand="+" ref_description="SGN-E310063 [cLEZ-8-E22]">
      <seq>aaaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5357" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5657" g_stop="5799" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="230" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="341" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="393" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="531" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E310063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5657" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</genome_strand>
        <mrna_strand>AAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343897" ref_strand="+" ref_description="SGN-E343897 [cTOF-12-D8]">
      <seq>aaagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggnttaaaaggttgcaaaactctaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5358" stop="8969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5658" g_stop="5799" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="229" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="340" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="392" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="530" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="629" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8669" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="685" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E343897" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5658" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAA</genome_strand>
        <mrna_strand>AAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGNTTAAAAGGTTGCAAAACTCTAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333388" ref_strand="+" ref_description="SGN-E333388 [cTOD-20-O4]">
      <seq>aagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagttttccatgctcttttacagatcactcttgataagaagaacctgtcaacagaactcacagttaaaaatactgancaacagccatttttcattcactactgcactgcatacttacttcagcgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5359" stop="8583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5659" g_stop="5799" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="228" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="339" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="391" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="530" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="630" r_length="100" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E333388" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5659" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAG-TTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCA-TTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTTCCATGCTCTTTTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGAACCTGTCAACAGAACTCACAGTTAAAAATACTGANCAACAGCCATTTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296635" ref_strand="+" ref_description="SGN-E296635 [cLET-39-A5]">
      <seq>aagagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5359" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5659" g_stop="5799" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="228" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="339" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="391" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="529" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E296635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5659" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</genome_strand>
        <mrna_strand>AAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728505" ref_strand="+" ref_description="SGN-E728505 [LA18AC01]">
      <seq>agagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgntctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5360" stop="9689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5660" g_stop="5799" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="227" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="338" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="390" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="528" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="627" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="725" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="833" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9314" g_stop="9389" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="909" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E728505" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5660" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAAT</genome_strand>
        <mrna_strand>AGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGNTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367592" ref_strand="+" ref_description="SGN-E367592 [cLPT-7-N20]">
      <seq>gagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtggaggagaaacctgttgttactgtggagctaagggatgggccttatagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5361" stop="7946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5661" g_stop="5799" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="337" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="389" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7646" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E367592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5661" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCC</genome_strand>
        <mrna_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGGAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367593" ref_strand="+" ref_description="SGN-E367593 [cLPT-7-N22]">
      <seq>gagaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtgattttgccatcaaatagaagatggcagcattgtctatgacctgggcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagagtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtatacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5361" stop="7540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5661" g_stop="5799" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="226" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="337" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7240" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="374" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E367593" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5661" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCT</genome_strand>
        <mrna_strand>GAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTGATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGGCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGAGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTATACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303935" ref_strand="+" ref_description="SGN-E303935 [cLEX-4-D19]">
      <seq>agaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5362" stop="7892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5662" g_stop="5799" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="225" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="336" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="388" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7592" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="434" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E303935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5662" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAA</genome_strand>
        <mrna_strand>AGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324332" ref_strand="+" ref_description="SGN-E324332 [cTOC-6-E9]">
      <seq>gaacttcagttgaaagcaaaaaagacttactttttgcaaatccttagtaattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaagaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5363" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5663" g_stop="5799" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="224" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="335" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="387" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="525" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E324332" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5663" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</genome_strand>
        <mrna_strand>GAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAAGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291843" ref_strand="+" ref_description="SGN-E291843 [cLET-7-M18]">
      <seq>taattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5410" stop="8941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5710" g_stop="5799" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="177" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="340" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="478" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="577" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8641" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="605" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E291843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5710" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATG</genome_strand>
        <mrna_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291980" ref_strand="+" ref_description="SGN-E291980 [cLET-7-M22]">
      <seq>taattttgccatcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgctttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcaacgcttctgtaacaggtgcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5410" stop="8934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5710" g_stop="5799" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="177" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="340" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="478" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="577" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8634" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="598" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E291980" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5710" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCA</genome_strand>
        <mrna_strand>TAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGCTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAAC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726431" ref_strand="+" ref_description="SGN-E726431 [LA11DB09]">
      <seq>atcaaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgatatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagaatttgtttgtgttgaaaatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5420" stop="9693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5720" g_stop="5799" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="167" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="278" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="330" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="468" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="567" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="665" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="773" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9314" g_stop="9393" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="853" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E726431" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5720" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCA</genome_strand>
        <mrna_strand>ATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGATATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGAATTTGTTTGTGTTGAAAATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248322" ref_strand="+" ref_description="SGN-E248322 [cLEG-1-O19]">
      <seq>caaatagaagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5422" stop="8575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5722" g_stop="5799" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="165" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="276" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="328" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="466" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8275" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="558" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E248322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5722" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTA</genome_strand>
        <mrna_strand>CAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282147" ref_strand="+" ref_description="SGN-E282147 [cLES-4-G14]">
      <seq>aagatggcagcattgtctatgacctggtcttgctctcccttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5429" stop="8583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5729" g_stop="5799" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="158" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="269" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="321" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="459" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="558" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E282147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5729" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>AAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335502" ref_strand="+" ref_description="SGN-E335502 [cTOE-2-E20]">
      <seq>cttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5467" stop="8583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5767" g_stop="5799" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="120" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="231" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="283" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="421" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="520" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E335502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5767" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</genome_strand>
        <mrna_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337340" ref_strand="+" ref_description="SGN-E337340 [cTOE-18-E12]">
      <seq>cttaacctcctcaaaatttcggcgagtcaatcgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5467" stop="8576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5767" g_stop="5799" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6025" g_stop="6111" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="120" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="231" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="283" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="421" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8184" g_stop="8276" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="514" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E337340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5767" e_stop="5799"/>
          <exon e_start="6025" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCGGTGAGTTTCACTTTCATTTTTCATCTCTCTATCATAATTTTTTGGTATGTCTTCTTCTTTCATTTCACCCATTTATCAATCAATTTTCTGCTCCCAGACTAGTGATTAATTCTTCAAAGATTTAAGCTTTTTTTGGACCCAAGTCTTGAAAAATGCGATCTTTTTATGTGGGGTTTTGTGTTTGATGAGAAATTGGCTGAATTGACGGGTTGCGGTTGGTCACAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTAC</genome_strand>
        <mrna_strand>CTTAACCTCCTCAAAATTTCGGCGAGTCAATCG.................................................................................................................................................................................................................................ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699439" ref_strand="+" ref_description="SGN-E699439 [FA10AD07]">
      <seq>ccgatattcaggaatggcatttgcaagtgtgaaatctactgaagggttggggaatttacccaaggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctacataatggcttgggtgataagatatctatcaaaaaccccaattggtctgatgctgttctatggaacccctctttgaccatggaaacaagctataaagattttgtttgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5722" stop="9683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6022" g_stop="6111" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="201" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="253" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="391" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="490" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="588" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="696" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9314" g_stop="9383" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="766" r_length="70" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E699439" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6022" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTT</genome_strand>
        <mrna_strand>CCGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTACATAATGGCTTGGGTGATAAGATATCTATCAAAAACCCCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCCTCTTTGACCATGGAAACAAGCTATAAAGATTTTGTTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734438" ref_strand="+" ref_description="SGN-E734438 [LB12CF11]">
      <seq>ggtcgttttgacttctcctcatggaagtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagtaaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtggaggaataccacattgtttcccacaatttggacctggcccaatccagcagcacggatttggaaggaacatgaattggtcccttgttagctctgaaagtgtgaaggagaaacctgttgttactgtggagctaagggatgggccttatagccgtgcaatgtgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaacccctccctgctttttcatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcaggtaagagtgttaagtgatatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="5785" stop="10170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6085" g_stop="6111" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6835" g_stop="6945" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="138" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258">
            <donor d_prob="0.552" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="7255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="190" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7547" g_stop="7684" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="328" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="427" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="525" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="633" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9314" g_stop="9395" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="715" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9634" g_stop="9876" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="958" r_length="243" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E734438" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>958</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6085" e_stop="6111"/>
          <exon e_start="6835" e_stop="6945"/>
          <exon e_start="7204" e_stop="7255"/>
          <exon e_start="7547" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9395"/>
          <exon e_start="9634" e_stop="9876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGTTTTGACTTCTCCTCATGGAAGGTACATTCTTAGTTTTTAAAATTGATGATTCTGGTGCTATGATGGTAAATTTGTTGGATACCAAGTAGGATTGTAAGAAATAGTTGTAGCAAAAGTAGGCTGTTTGATATTGAACCTTAATCTGATATCTTAATGGTACTGCATTTTGCAGAAAAGATCTAATCTTAAAGGATTAAATATTACTACCTTGGTTCCAATTTGTTAGTAAAAGTGATTTTTGAATCTTGTGGTCTTAAACTAATGAAAGGCAGAACTTACTAAAATGCTCTTTAATTTTTGGTCTTAAACATGACATACGGAAAGTTAGAATTAAAGAGTTGCCAAAAAAGGAAAGGGACATACTTACTCACTAATGCATTATGTAATGAGGTGGGTGGGGAAGATCTTCCAAGTACTTCATGTTGAACTGATCCCGATCTGGACCAATAGCTAAATTTTCTAGAAACAAAAGTGATGTCTGATGATGCTATGAGCTGTTTATCAGTGATATTAGTAGTACTGCATTAGTCATTCCGATGGCAATATCATTTCTTGAGTAATGCAGCAATTCATACTTCCTATAGCTTTACAAGTTCAAAACACTGGGTTTGTACTATGTAGAGATACTGGGTTTGTACTATGTAGAGATATTGAATAGGCTCGTCAAAATTGTTCCTGGGTACTTACCTGAAAGTTGGCTTATGTGGTCGATTGGCTAAAAGCCTTCTTTCCTTCATTTTGCAGTGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAGGTCATCAGCCAGTTTTCAAGTTCTAGAATTTGGTCACAGTTATATTTGCTCTTTTGAACAGCTAAAACTTAAGCTTTCCTCTTCCTCAACACAGTAGAGCACGTTTGATTATTTACAATTCACCTGACTAGAAGCGTTTTTCCTTACTTTTGTTAAAGATGCAGTATTATCAATCTTCTACTATCCTTCAAAATTTAAAATTGGAAAGAACTAAAGAGGTTATATCACCTTCCTTACTAACTATTTTACATTGTACAGTGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAGGTAAATTACTTCTCATGTTTCAATGTATATAGTTTAGACTTCTTAAAGTTAGAGAGGTTGCATTTGTTTATTGAGAAGCAACTCCTTTACAAAAGCATCAAGTGACAGTTTCTTCTGCCAATGCACTCTATCCCTTAGCTACATACTAGAAAAATAGTTATATCTCTACTTACAGTTCTATTGGTAATTGTGTGATGCAATACCTTAACTTATTCTTGAATATTTCATGCTATCCGATCAGTTTCTGAATGCTGGTTTTGAGTCTTAAATATATGCTCATCTGGTTGACAGCACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCT</genome_strand>
        <mrna_strand>GGTCGTTTTGACTTCTCCTCATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG..................................................................................................................................................................................................................................................................TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG...................................................................................................................................................................................................................................................................................................CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCCTCCCTGCTTTTTCATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGGTAAGAGTGTTAAGTGATATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350202" ref_strand="+" ref_description="SGN-E350202 [cTOS-4-K8]">
      <seq>tgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactggtgcttaaagatacctccccggaaaagaatcaactttttggaagaaacctcccctggcttttcatttaaaagactcacttgagaaaatgattgaaaatggctatacaaataaaagaaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatcccagatttacgatggaacaggaaaaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="7355" stop="10292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7655" g_stop="7684" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9314" g_stop="9395" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9634" g_stop="9992" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="777" r_length="360" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E350202" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7655" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9395"/>
          <exon e_start="9634" e_stop="9992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCT-CCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCT-GCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAG-AATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAAGTAC</genome_strand>
        <mrna_strand>TGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGGTGCTTAAAGATACCTCCCCGGAAAAG-AATCAACTTTTTGGAAGAAACCTCCCCTGGCTTTTC-ATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAATAAAAGAAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCCAGATTTACGATGGAACAGGAAAAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349191" ref_strand="+" ref_description="SGN-E349191 [cTOS-2-G20]">
      <seq>tgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctcccatcaatcttctctgtatttgcaaaatcctaattgtacaaggtaaacgatatgaaggtgcaaagtgcataagctgaattatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="7355" stop="10264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7655" g_stop="7684" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9314" g_stop="9395" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9634" g_stop="9964" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="748" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E349191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7655" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9395"/>
          <exon e_start="9634" e_stop="9964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCA</genome_strand>
        <mrna_strand>TGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353932" ref_strand="+" ref_description="SGN-E353932 [cTOS-10-F22]">
      <seq>tgggactatagtttccatgctctttacaagatcactcttgataagaagaccctgtcaacagaactcacagttaaaaatactgacaacaagccattttcattcactactgcactgcatacttacttcagcgcttctgtaacaggtgcatcagttaatggtttaaaaggttgcaaaactctaaacaaggttcctgatcccacaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctcccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgatatttacatcttctctccatcaatcttctctgtatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="7355" stop="10203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7655" g_stop="7684" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8184" g_stop="8282" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8614" g_stop="8711" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9314" g_stop="9395" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9634" g_stop="9903" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="686" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E353932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7655" e_stop="7684"/>
          <exon e_start="8184" e_stop="8282"/>
          <exon e_start="8614" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9395"/>
          <exon e_start="9634" e_stop="9903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTATAGTTTCCATGCTCTTTACAAGGTTTGAGTAGTACATATTTATCTTTCGCCTTTCCAGTCAAAATTTTGAACTAGTTTCTAATATCACCTCTGTAGCTAATTACAGTCACAGACAGCTAAACTGGACGAATACCTGTTTGAGTAAACGAAGGGTGAAAGCTAATGGCAGATCTATAGGGGGAATGCCCAGCTACCTTTGCATCTGCTAATTATATTTGCCTATGTTAATTTGTAACTTTTCTAAAGTAACTACATAGAATGTGCTAATCGCCCCTTTCCCGACATATATTAGCCCACAACTTTCAAATCCAAGACCTATAATTGGTATGTGACTTTTTGTTATAGAGAAATTGGATAAAGGACTCTCATTTACATACCTTGGTAAAGTACCTATTTGATTTGATAGATGTCTATGATATACCTTCCGCTCTCTCATAGTTACAAGGGAGGATTCTTTTGATCATGATTCACGTGTGGTACATGATAAAACTTCTAATTTCTCATTTTGCAATTGATTGCAGATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGCGTAAGTATTTCTCTGGCAACTTGTGCTTGGAAATTTCCATAGTTTGGGTGCATCTCCTAAAACTCCTAAAATTTATCAGCGATTCAAGACCTGACCACCTGTATGCTAGTAAATATTCCTGTTCTGCTGTCTCACTCTTCAAGTCAAATAGGCCTCACTTGTTCCTTTTCTTTTTTCTTTTACCTCAAGCATTTTGGCTCCATGGTTGATGTAGGCTAACTCATTTCCTTAGAATTTCATAATCTTTGGGGTAAAATTGATTCTTGATCATTGTTGAAATTGTTATCCACTAAAAAGAGAAGATTTTATCATCTAATATTCTCTTCTTCAGGCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCA</genome_strand>
        <mrna_strand>TGGGACTATAGTTTCCATGCTCTTTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC...........................................................................................................................................................................................................................................................................................................................................GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCT-CCATCAATCTTCTCTGTATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287853" ref_strand="+" ref_description="SGN-E287853 [cLES-19-G15]">
      <seq>acaaaccctgtcgagggaaaagaggaaagagatgtggtgacatttcctggatttgtggactgtgtttatcttgatgcacctaatgagttacacctagataatggcttgggtgataagatatctatcaaaaacaccaattggtctgatgctgttctatggaaccctcatttgaccatggaacaaagctataaagattttgtttgtgttgaaaatgccaagattggaacagtgcagcttgaaccagagcaatcttggacggctgtacaacatctaactgttgcttaaagatacctnnccggaagagaaatcaactttttggagaaaccctcccctgcttttcaatttaaaagactcacttgagaaaatgattgaaaatggctatacaaaataaagaataatgttgtatctaacatgacctgcatttcatagcagttaagagtgttaagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="8383" stop="10164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8683" g_stop="8711" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9098" g_stop="9205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="137" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9314" g_stop="9395" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="219" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9634" g_stop="9861" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="448" r_length="229" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="449" polyA_stop="461"/>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E287853" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8683" e_stop="8711"/>
          <exon e_start="9098" e_stop="9205"/>
          <exon e_start="9314" e_stop="9395"/>
          <exon e_start="9634" e_stop="9861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCCTGTCGAGGGAAAAGAGGAAAGGTCAGTATGAGATCTCAAATATATCATGAAATCATCATTCACTTCTCCCAGAACATACTTATTATCTTAAAGAATTCGTGACTGCAATTGAGAATTTATATTCTCTGCAAACGTATGTCTCTGGGAGATGTCTGGTTGGGCTTTATATTTTTGTCATCACGAGTCAGGTTAATACTCTTAATGATAAACTATGAAAATCACTAATGAACATACAAATACTCACATATTGCCTAAAACCAACCCATATTTCTAGAATTCTGAAGTACTTATACTTTGGCACTATTTTGTTGTCAAGGAAATCTAAGAAATGTTGCGATTCTAGTACATGCATATAGGTCATTCTCTCAAGAACCTAATCCTCATTCTGATTATTTCACCTGTTTCAGAGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAAGTGAGTTACTAGTACCCAGACACATTGCCGTGATGGAGTTTATTAAAAGAACTGTCTAGCCCCCCTAGTTGTCTAATTTAGCAAGTTGCTTGTGTTTTGTATGTGCAGTTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAGGTATTTACAATGAATCTCTCTGTATTTCTAAATTGAAGCGTGTGATTAGATTTTTGTGTCCCATTTACTTTGAGGTGCCGCGTGTGATCTCTTCATACATTTGATCAAATTGCTGACAAATATCCTATTGTCTGTCGAATTGTGTGGTCTTTCCTCTTGTGGTTGAGAAGATTCAAATGCTTGACCTAATAAGCAATTTATATCATTTTTTGGTGTGTTTTTCTTTGGTTCATATCAGATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCT-CCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTG</genome_strand>
        <mrna_strand>ACAAACCCTGTCGAGGGAAAAGAGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA............................................................................................................TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG..............................................................................................................................................................................................................................................ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTNNCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391832" ref_strand="+" ref_description="SGN-E391832 [TUS-24-N13](-)">
      <seq>aaccagccttcctgttttcagctatatttttacagtacaggtgacaaggtcattccaattcagtcagttgaatcttttattcaagagcagaggaaaattgggagagaggttcactctttcaactttggcttttttcctcatgtagatcattaccgaacttttccagacaaatatgtatttgtattacagaaatttttccaagaatgtacattcatacccaaagggaaaagacgttaatagatcaaaggagttgagggtgattaaccattcctcgtagtctttattgaattgctttaattggggcaatgtattttaagagttgcaaactagttttgtgttaagtgctgtcaattgctactcaggcagtaacattttgcaatgaggaggctttgctgcaagtggactggtagtagttgcaaattggtccaaagtagacttacatttccggccaatgttttttaataacatgaggaagtctttatttgtgttttatttaattgagcatgttgtttcgtccttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="13543" stop="12425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13243" g_stop="12724" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="546"/>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E391832" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13243" e_stop="12724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTTATTCAAGAGCAGAGGAAAATTGGGAGAGAGGTTCACTCTTTCAACTTTGGCTCTTCTCCTCATGTAGATCATTACCGAACTTTTCCAGACAAATATGTATCTGTATTACAGAAATTTCTCCAAGAATGTACACTCATACCCAAAGGGAAAAGACGTTAATAGATCAAAGGAGTTGAGGGTGATTAACCATTCCTCGTAGTCTTTATTGAATTGCTTTAATTGGGGCAATGTATCTTAAGAGTTGCAAACTAGTCTTGTGTTAAGTGCTGTCAATTGCTACTCAGGCAGTAACATTCTGCAATGAGGAGGCTTTGCTGCAAGTGGACTGGTAGTAGTTGCAAATTGGTCCAAAGTAGACTTACATCTCCGGCCAATGTTTTCTAATAACATGAGGAAGTCTTTATTTGTGTTTTATTTAATTGAGCATGTTGTTTCGTCCTTT</genome_strand>
        <mrna_strand>AACCAGCCTTCCTGTTTTCAGCTATATTTTTACAGTACAGGTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTTATTCAAGAGCAGAGGAAAATTGGGAGAGAGGTTCACTCTTTCAACTTTGGCTTTTTTCCTCATGTAGATCATTACCGAACTTTTCCAGACAAATATGTATTTGTATTACAGAAATTTTTCCAAGAATGTACATTCATACCCAAAGGGAAAAGACGTTAATAGATCAAAGGAGTTGAGGGTGATTAACCATTCCTCGTAGTCTTTATTGAATTGCTTTAATTGGGGCAATGTATTTTAAGAGTTGCAAACTAGTTTTGTGTTAAGTGCTGTCAATTGCTACTCAGGCAGTAACATTTTGCAATGAGGAGGCTTTGCTGCAAGTGGACTGGTAGTAGTTGCAAATTGGTCCAAAGTAGACTTACATTTCCGGCCAATGTTTTTTAATAACATGAGGAAGTCTTTATTTGTGTTTTATTTAATTGAGCATGTTGTTTCGTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727097" ref_strand="+" ref_description="SGN-E727097 [LA13CH08]">
      <seq>aataacaaagtcgcaaatcctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatgagcggttgacgaagataattactgtccttgtcaagaaccagccttcctgtcttcagctatatctttacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15499" stop="12908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15199" g_stop="14751" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14750" i_stop="14446" i_length="305">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="552" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13439" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="761" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13277" g_stop="13208" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="831" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E727097" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15199" e_stop="14751"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13439"/>
          <exon e_start="13277" e_stop="13208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGT</genome_strand>
        <mrna_strand>AATAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG.................................................................................................................................................................................................................................................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391833" ref_strand="+" ref_description="SGN-E391833 [TUS-24-N13]">
      <seq>cggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgagaaacattcaaactaatggagccatgatgatggaaaccgttctttttgcaacacttgaaaagcttttctcgttgcttcttaatttgcctgatgttaatgagcgattgaaaaagataattactgtccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15099" stop="13138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14799" g_stop="14541" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14540" i_stop="14446" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="362" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13439" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="571" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13277" g_stop="13248" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="601" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E391833" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14799" e_stop="14541"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13439"/>
          <exon e_start="13277" e_stop="13248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGAGTAAGCACTACAACATGTTATGTTCTTTTTGTTTACTTATGAATTAGGAAATAGTTCAGAGAAATATGGTTTGCAGTAAGTATTCAGCTATTGATTAGAAGGTTTGGTCTATTGAAAAAGTTTATAGCTACTTCTAATTATTGGTTATTTCCAATTTACAGGCGGTTGACGAAGATAATTACTGTCCTTGT</genome_strand>
        <mrna_strand>CGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGAGAAACATTCAAACTAATGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAAAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA.................................................................................................................................................................GCGATTGAAAAAGATAATTACTGTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246779" ref_strand="+" ref_description="SGN-E246779 [cLEF-45-N14]">
      <seq>ggttgtgatgttgggttggctcaggtcaaacccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaggaaatgaagtggaacgtccattaaccttgggaaacattcaaactaagggagccatgatgatggaaaccgttctttttgcaacacttgagaagcttttctcgttgcttcttaatttgcctgatgttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15098" stop="13140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14798" g_stop="14541" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14540" i_stop="14446" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="361" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13440" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="569" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E246779" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14798" e_stop="14541"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATG</genome_strand>
        <mrna_strand>GGTTGTGATGTTGGGTTGGCTCAGGTCAAACCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555346" ref_strand="+" ref_description="SGN-E555346 [cTSC-1-P21]">
      <seq>cctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcgtagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttcagtagaagctggagaaagaaatgaagtggaacgtccattaaccttgggaaacattcaaactagggagccatgatgatggaaaccgttctttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15481" stop="13190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15181" g_stop="14537" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14536" i_stop="14446" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="748" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13490" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="905" r_length="157" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E555346" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15181" e_stop="14537"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGC</genome_strand>
        <mrna_strand>CCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAG...........................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAAGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACT-AGGGAGCCATGATGATGGAAACCGTTCTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700899" ref_strand="+" ref_description="SGN-E700899 [FA14BH09]">
      <seq>ggaagcctctgtcagactactcacttgttctaaccgtcaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcgtagttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataagccctaaggtctgggcagctggatttactgcagccatgctgaagaagtgtagctcctttgcatattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15467" stop="13286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15167" g_stop="14537" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14536" i_stop="14446" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="734" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13586" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="796" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E700899" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15167" e_stop="14537"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTC</genome_strand>
        <mrna_strand>GGAAGCCTCTGTCAGACTACTCACTTGTTCTAACCGTCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAG...........................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315366" ref_strand="+" ref_description="SGN-E315366 [cTOA-22-A7]">
      <seq>caagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatgagcttgctttgtggttgtcggaatccgataacgatggtcgtgaacggtgtttgatttttcacacattcagtaataccggttggcttgcttatggtgctattcttgagaatctgaaaaatagacaggatttgttggaaaagatcaagggttgtgtcgtagattccggtggtgatccagatataaaccctaagggctgggcagctggatttactgcaaccatgctgaagaagtgtaactcctttgcatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15187" stop="13289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14887" g_stop="14541" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14540" i_stop="14446" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14343" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="450" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13647" g_stop="13589" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="509" r_length="59" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E315366" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14887" e_stop="14541"/>
          <exon e_start="14445" e_stop="14343"/>
          <exon e_start="13647" e_stop="13589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAGGTTGATTAATGGGACTTCAAATATTGATCATGCTAAAGTTATTAGTAATTTTTAGCTGTTCTAACCTTTATTAGTATTTGTTACTGTGCAGTTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAGGTTGTTTTTTTACCTCATCCTACCATCACTTCCCTTTATCTGATGCTTTATAGGATAGCATTCAGCTGCTTTTGATGCTATCCTTTTGTTTGAGCCTTAATTACTCTTTTCTCTAAAATTGATTTTGGTTTAGTAAAATGTAACTATGGATTCATCATATGGTCGGAGGACCAGGATGATTGACGTATACCAAGGGTTCTTTGTTCACTAATCCACATACGGATACCTGAAAAGTTTTTGACTTTTCTCATTGCAAAGGATATGGGTTGGTATGGAATGTGTTTCATACTGTTTAAGTTATCATAGAAATTTCAGTTTCAAGATGATAGTTTCTATTGTAACCTCTTGGTTGGGTATAGCCAGGACACAAGCCTCTTTAAATATTCTTTGAGATTTCAGCATTGCTCTTTGCCATTGTCTTTCTTTGATAGGTTGAACTATTTGATGGAGTTTTTCTCACAACTTGGGGAAATTCCATTCCAAGAATGCTTGGCAATTTTTTCTCTTCCTTTTGTGGGGGAATTCTGTTCTTTTCATTTTGGAAGATTATTTGTTCTTCTGGTGCACTTTTTCATTCATTCCTTTTAAAAAACGCAGTGCATTATTTTCGCTTTTGTTGTATAGTGTTGATTCTGATCCTACAGAATTGAGTAATGAGGAAAGTTGTATGGTAATTCAGTCTTAACTGCTTGCAGGTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTC</genome_strand>
        <mrna_strand>CAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC...............................................................................................TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAACCCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGGCAGCTGGATTTACTGCAACCATGCTGAAGAAGTGTAACTCCTTTGCATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311187" ref_strand="+" ref_description="SGN-E311187 [cLEZ-16-A6]">
      <seq>ctcctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacatttgttgcttctgtgaaagatgttctttctttcgatcttggcaagaaattggaagagaggattgctgtattggcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15480" stop="14329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15180" g_stop="14629" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E311187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15180" e_stop="14629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATG</genome_strand>
        <mrna_strand>CTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311571" ref_strand="+" ref_description="SGN-E311571 [cTOA-6-I11]">
      <seq>tcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagccgaaacatttgaggaggtatatcgagttgtataactctaagggtattcacgctctaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15476" stop="14407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15176" g_stop="14707" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E311571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15176" e_stop="14707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACAT</genome_strand>
        <mrna_strand>TCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317877" ref_strand="+" ref_description="SGN-E317877 [cTOA-30-L10]">
      <seq>ctcattcaatggaagcctctgtcagactactcacttgttctaatcgccaccatgtctccccttctctcttcctcaaactcaatcacaagccctttcctttatcaccatcttcctttcgaaccccttcactttcttctcccccaaagaatcgcccccgcattttcttatcacatcgcaatccctcctccccactttcttctccatttgggttttcgaaaaaccctttcccgtcgaaattcttgaatcccatcttatccagcgatcgttttgctcgaatagtatctggtacccaagataaattattcgattggcattttgctgctggcagtgaaaagggtaatgaaattggggcaatacccaaagaaggcccaattgtgacggttgtgatgttgggttggctcgggtcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="-" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="15477" stop="14467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15177" g_stop="14767" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="-" ref_id="SGN-E317877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15177" e_stop="14767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGC</genome_strand>
        <mrna_strand>CTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722474" ref_strand="+" ref_description="SGN-E722474 [FC17BE09]">
      <seq>gggcgattggcggcaaatcggccgaattgacagtgtccttctccttcgcccatcatctctctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctaaagattgggccaggtgcaccttcagttttcaactgtgtggttgaaataggcaaaggcagcaaagtcaagtatgagcttgacaaggcaagtggccttataaaggttgaccgaatactgtactcatcagttgtttatccacacaactatggtttcattccaagaaccctttgcgaagacagtgatccaatggacgtcttggtactgatgcaggaacctgtgttaccaagtacctttcttcgtgctcgtgcaattggattgatgcctatgattgatcagggtgagaaagatgacaagataatagcagtgtgtgcagatgatcccgagtttcgccactacacagacatcaaggagcttcctcctcatcgtcttgctgaaattcggcgcttttttgaagactataaaaagaatgagaacaagtcagttgccgttgaggactttcttcctgctgaagcagctgtagatgccatcaagtattccatggacctgtatgcttcttacattgtggaaagtttgaggaagtgaccttgttgaggacttgttgtcactactgaaaatcgaagcagaaaagccagttgacttgttgacgatggctccctgaatttcatatgcatactttagtttaatgtggtagtatcaaatactatttgaaatgcatgtagaactttcaattttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="25923" stop="29625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26227" g_stop="26257" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="64" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26258" i_stop="26856" i_length="599">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="200" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27199" g_stop="27227" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="229" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27228" i_stop="27686" i_length="459">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27687" g_stop="27752" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="295" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27753" i_stop="27871" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.514" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27872" g_stop="27979" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="403" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27980" i_stop="28097" i_length="118">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28098" g_stop="28163" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="469" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28164" i_stop="28567" i_length="404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28568" g_stop="28688" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="590" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28689" i_stop="28945" i_length="257">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28946" g_stop="29027" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="672" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29028" i_stop="29128" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29129" g_stop="29325" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="869" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E722474" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26227" e_stop="26257"/>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27227"/>
          <exon e_start="27687" e_stop="27752"/>
          <exon e_start="27872" e_stop="27979"/>
          <exon e_start="28098" e_stop="28163"/>
          <exon e_start="28568" e_stop="28688"/>
          <exon e_start="28946" e_stop="29027"/>
          <exon e_start="29129" e_stop="29325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTTCTCCTTCGCCCATCATCTCTCTCTGTAAGTTATTCATCTTTTCATTCTTTCTTCTTTATTGAAGTTTTTCTGTTTCTGTTTGTCATTTGATTGCTATAAATGTATATGTCGCTTTTTGGATGGGTTCTTGCAACATTATTTCTGGTGACGATTAGATTGTAGTTATAGTTTTGTTTATTTGATATTTTTCTTTCTGGGTTGATTTTTCCAGTGGGTTTTACTTCGGCTTGTTGTTTGTGCTGGCATTGGTTAGCGTTCTTTTCACTCCAACCGTACCATCTTTTCTAATTTTCAGCTCTTCTTTAAGGGTTTTACAAGCAATCTTATTTTCTTCATCCTTTTTGAATCCACATTCCATCTATCAATTTCTTCTTCTTTTCTTGTTACCTTTTTGGGGTTCTAAAGTGGCTTTCAATACACTTAGTAATGAAGTTAAGGGTAATCTGACAGGGAAAAAGAATACGCATCTCTGCTTGTGAAAATTTAATTTGTATTGCTAACAACCTGGGATGGATTTGTATGTCCTGATAGTCTGATCATATTTGTTACTTAATTGCATTATTACGTTGAATTATGATCGTCTAGATATATGCTAATTGTTGGGTTTCCTTTTTGTTGTTCAGTTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGTCGGGGGATATAGTCCCAACTCCCAAGTACTACACAGATGGCATTGAGTTTCACGCAAACTTATATCTTAAAGAGTTATTTGGCAGGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAGGTGCTATTTTAACCCAGTGATCTTTAATTCTTTCCAGCCTTTTGAAATTCATTTAAGAGTTTTCATGGTTATGATAATCATTTGACCGAATACTGAATTGCTGAACTTGTGTCTAAAAGGTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAGGTATATCTTTGTTTACACATGCACATACACACATCTTCCTTGGGCCCAATCTAGCATTACTTGCCTCAGTGTAACCTTATTCCTAGGTACTCTTACATCCATGCTATATGTTGTATAGGAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAGGTAAGGTTTTTCAATCGAGTAAACTTTCTGCCACATGTACTTTAGGATATTGAAAATTGCTGAACAAAAAAAAACATTTGCTTATAAAAAATCTGATAGTTTAGTTTTAATTTCCTTAAGTTTTGTTGTGTACATATTTTAACCTTGAGAGGTCAATACACTTGATAACTTCTCCCTTTGTCAACTTGATGAAGGGTGGTGATAACTTCTCATCCGTTGCAGTTGATAGAAAACTATGAGAGGGAATATTGAAACCAGAATTAGAATTTTAGTAGACACAAACCAAATAACTTGGTTGTGTGTGACATTGTGGCACCACAGTTATATTTCCCTTTTTTGTGAGTGAATTGCAACAACTATAGCAAAATATGGAATAACTGATAGATATTAATGCTCTGTTACAGGGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTTTGAAGACTGTATCCTCGATATGGCATTTCGTCATGCATTAATTTAAGAAGGAAATACTCCATATTCATCCTGATAGGTCTGAGGCTGCTGGATGTGTATGGAGGATTCTGGGTTTATATGTCACCCCAATGGGTGTCTATTTCCATTTCTTATAAATTTCAAGAATATATTTAAGACCATGTTTGCATATCGTAAGGCTTTTGACACCTTTGCTAGGGTATGTATCTACTGTTTCTGCTATAGATCCTTGACTCTCTATCAACAGATAAAAAGAATGAGAACAAGTCAGTTGCCGTTGAGGACTTTCTTCCTGCTGAAGCAGCTGTAGATGCCATCAAGTATTCCATGTCAGTTATTTTGAATTCTCTCATGTTGTAAGATTGTTTATTCTTTTGTGTTATCAATTTTCCTAACCAAAAAATATTCATCTCCACGGTTGTGATCGCAGGGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGAAAATCGAAGCAGAAAAGCCAGTTGACTTGTTGACGATGGCTCCCTGAATTTCATATGCATACTTTAGTTTAATGTGGTAGTATCAAATACTATTTGAAATGCATGTAGAACTTTCAATTTTCATG</genome_strand>
        <mrna_strand>TGTCCTTCTCCTTCGCCCATCATCTCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAAAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAG.......................................................................................................................GTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAG......................................................................................................................GAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTTTGAAGACT.................................................................................................................................................................................................................................................................ATAAAAAGAATGAGAACAAGTCAGTTGCCGTTGAGGACTTTCTTCCTGCTGAAGCAGCTGTAGATGCCATCAAGTATTCCAT.....................................................................................................GGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGAAAATCGAAGCAGAAAAGCCAGTTGACTTGTTGACGATGGCTCCCTGAATTTCATATGCATACTTTAGTTTAATGTGGTAGTATCAAATACTATTTGAAATGCATGTAGAACTTTCAATTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725288" ref_strand="+" ref_description="SGN-E725288 [FC26CF04]">
      <seq>aatcggccgaattgacgtgtccttctccttcgcccatcatctctctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctagagattgggccaggtgcaccttcagttttcaactgtgtggttgaaataggcaaaggcagcaaagtcaagtatgagcttgacaaggcaagtggccttataaaggttgaccgaatactgtactcatcagttgtttatccacacaactatggtttcattccaagaaccctttgcgaagacagtgatccaatggacgtcttggtactgatgcaggaacctgtgttaccaagtacctttcttcgtgctcgtgcaattggattgatgcctatgattgatcagggtgagaaagatgacaagataatagcagtgtgtgcagatgatcccgagtttcgccactacacagacatcaaggagcttcctcctcatcgtcttgctgaaattcggcgcttttttgaagactataaaaagaatgagaacaagtcagttgccgttgaggactttcttcctgctgaagcagctgtagatgccatcaagtattccatggacctgtatgcttcttacattgtggaaagtttgaggaagtgaccttgttgaggacttgttgtcactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="25923" stop="29500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26227" g_stop="26257" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="48" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26258" i_stop="26856" i_length="599">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="184" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27199" g_stop="27227" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="213" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27228" i_stop="27686" i_length="459">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27687" g_stop="27752" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="279" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27753" i_stop="27871" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.514" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27872" g_stop="27979" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="387" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27980" i_stop="28097" i_length="118">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28098" g_stop="28163" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="453" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28164" i_stop="28567" i_length="404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28568" g_stop="28688" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="574" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28689" i_stop="28945" i_length="257">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28946" g_stop="29027" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="656" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29028" i_stop="29128" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29129" g_stop="29200" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="728" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E725288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26227" e_stop="26257"/>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27227"/>
          <exon e_start="27687" e_stop="27752"/>
          <exon e_start="27872" e_stop="27979"/>
          <exon e_start="28098" e_stop="28163"/>
          <exon e_start="28568" e_stop="28688"/>
          <exon e_start="28946" e_stop="29027"/>
          <exon e_start="29129" e_stop="29200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTTCTCCTTCGCCCATCATCTCTCTCTGTAAGTTATTCATCTTTTCATTCTTTCTTCTTTATTGAAGTTTTTCTGTTTCTGTTTGTCATTTGATTGCTATAAATGTATATGTCGCTTTTTGGATGGGTTCTTGCAACATTATTTCTGGTGACGATTAGATTGTAGTTATAGTTTTGTTTATTTGATATTTTTCTTTCTGGGTTGATTTTTCCAGTGGGTTTTACTTCGGCTTGTTGTTTGTGCTGGCATTGGTTAGCGTTCTTTTCACTCCAACCGTACCATCTTTTCTAATTTTCAGCTCTTCTTTAAGGGTTTTACAAGCAATCTTATTTTCTTCATCCTTTTTGAATCCACATTCCATCTATCAATTTCTTCTTCTTTTCTTGTTACCTTTTTGGGGTTCTAAAGTGGCTTTCAATACACTTAGTAATGAAGTTAAGGGTAATCTGACAGGGAAAAAGAATACGCATCTCTGCTTGTGAAAATTTAATTTGTATTGCTAACAACCTGGGATGGATTTGTATGTCCTGATAGTCTGATCATATTTGTTACTTAATTGCATTATTACGTTGAATTATGATCGTCTAGATATATGCTAATTGTTGGGTTTCCTTTTTGTTGTTCAGTTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGTCGGGGGATATAGTCCCAACTCCCAAGTACTACACAGATGGCATTGAGTTTCACGCAAACTTATATCTTAAAGAGTTATTTGGCAGGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAGGTGCTATTTTAACCCAGTGATCTTTAATTCTTTCCAGCCTTTTGAAATTCATTTAAGAGTTTTCATGGTTATGATAATCATTTGACCGAATACTGAATTGCTGAACTTGTGTCTAAAAGGTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAGGTATATCTTTGTTTACACATGCACATACACACATCTTCCTTGGGCCCAATCTAGCATTACTTGCCTCAGTGTAACCTTATTCCTAGGTACTCTTACATCCATGCTATATGTTGTATAGGAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAGGTAAGGTTTTTCAATCGAGTAAACTTTCTGCCACATGTACTTTAGGATATTGAAAATTGCTGAACAAAAAAAAACATTTGCTTATAAAAAATCTGATAGTTTAGTTTTAATTTCCTTAAGTTTTGTTGTGTACATATTTTAACCTTGAGAGGTCAATACACTTGATAACTTCTCCCTTTGTCAACTTGATGAAGGGTGGTGATAACTTCTCATCCGTTGCAGTTGATAGAAAACTATGAGAGGGAATATTGAAACCAGAATTAGAATTTTAGTAGACACAAACCAAATAACTTGGTTGTGTGTGACATTGTGGCACCACAGTTATATTTCCCTTTTTTGTGAGTGAATTGCAACAACTATAGCAAAATATGGAATAACTGATAGATATTAATGCTCTGTTACAGGGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTTTGAAGACTGTATCCTCGATATGGCATTTCGTCATGCATTAATTTAAGAAGGAAATACTCCATATTCATCCTGATAGGTCTGAGGCTGCTGGATGTGTATGGAGGATTCTGGGTTTATATGTCACCCCAATGGGTGTCTATTTCCATTTCTTATAAATTTCAAGAATATATTTAAGACCATGTTTGCATATCGTAAGGCTTTTGACACCTTTGCTAGGGTATGTATCTACTGTTTCTGCTATAGATCCTTGACTCTCTATCAACAGATAAAAAGAATGAGAACAAGTCAGTTGCCGTTGAGGACTTTCTTCCTGCTGAAGCAGCTGTAGATGCCATCAAGTATTCCATGTCAGTTATTTTGAATTCTCTCATGTTGTAAGATTGTTTATTCTTTTGTGTTATCAATTTTCCTAACCAAAAAATATTCATCTCCACGGTTGTGATCGCAGGGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGA</genome_strand>
        <mrna_strand>TGTCCTTCTCCTTCGCCCATCATCTCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAG.......................................................................................................................GTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAG......................................................................................................................GAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTTTGAAGACT.................................................................................................................................................................................................................................................................ATAAAAAGAATGAGAACAAGTCAGTTGCCGTTGAGGACTTTCTTCCTGCTGAAGCAGCTGTAGATGCCATCAAGTATTCCAT.....................................................................................................GGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304532" ref_strand="+" ref_description="SGN-E304532 [cLEX-11-G8]">
      <seq>tccttcgcccatcatctctctctttaaatatgagctgaaaatagtggaaaagcgagtggaagaaactcatgaacctcccgtgttgctcttaatgaaagaattctttcctccttgtcacgaaaatctattgctgctgatccatggcatgacctacagattgggccaagtgcaccttcagttttcaactgtgtggttgaaatacgcaaaggcagcatagtcaaatatgagcttgacaaggcatgtggccttataaaggttgaccgagtactgtcctcttcacatgtttatccacacaactatggtttcattccaagaaccctttgcgaagacagggatccaatggacgtcttggttctgatgcatgaacctgtgttaccaagtacctttcttcttgctcatgcaattggattgatgcctatgattgatcatggtgagaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="25935" stop="28468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26235" g_stop="26257" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26258" i_stop="26856" i_length="599">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="160" r_length="137" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27199" g_stop="27227" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="189" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27228" i_stop="27686" i_length="459">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27687" g_stop="27752" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="255" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27753" i_stop="27871" i_length="119">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.514" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27872" g_stop="27979" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="363" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27980" i_stop="28097" i_length="118">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28098" g_stop="28163" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="429" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E304532" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26235" e_stop="26257"/>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27227"/>
          <exon e_start="27687" e_stop="27752"/>
          <exon e_start="27872" e_stop="27979"/>
          <exon e_start="28098" e_stop="28163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCGCCCATCATCTCTCTCTGTAAGTTATTCATCTTTTCATTCTTTCTTCTTTATTGAAGTTTTTCTGTTTCTGTTTGTCATTTGATTGCTATAAATGTATATGTCGCTTTTTGGATGGGTTCTTGCAACATTATTTCTGGTGACGATTAGATTGTAGTTATAGTTTTGTTTATTTGATATTTTTCTTTCTGGGTTGATTTTTCCAGTGGGTTTTACTTCGGCTTGTTGTTTGTGCTGGCATTGGTTAGCGTTCTTTTCACTCCAACCGTACCATCTTTTCTAATTTTCAGCTCTTCTTTAAGGGTTTTACAAGCAATCTTATTTTCTTCATCCTTTTTGAATCCACATTCCATCTATCAATTTCTTCTTCTTTTCTTGTTACCTTTTTGGGGTTCTAAAGTGGCTTTCAATACACTTAGTAATGAAGTTAAGGGTAATCTGACAGGGAAAAAGAATACGCATCTCTGCTTGTGAAAATTTAATTTGTATTGCTAACAACCTGGGATGGATTTGTATGTCCTGATAGTCTGATCATATTTGTTACTTAATTGCATTATTACGTTGAATTATGATCGTCTAGATATATGCTAATTGTTGGGTTTCCTTTTTGTTGTTCAGTTAAATATG-GCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGTCGGGGGATATAGTCCCAACTCCCAAGTACTACACAGATGGCATTGAGTTTCACGCAAACTTATATCTTAAAGAGTTATTTGGCAGGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAGGTGCTATTTTAACCCAGTGATCTTTAATTCTTTCCAGCCTTTTGAAATTCATTTAAGAGTTTTCATGGTTATGATAATCATTTGACCGAATACTGAATTGCTGAACTTGTGTCTAAAAGGTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAGGTATATCTTTGTTTACACATGCACATACACACATCTTCCTTGGGCCCAATCTAGCATTACTTGCCTCAGTGTAACCTTATTCCTAGGTACTCTTACATCCATGCTATATGTTGTATAGGAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAG</genome_strand>
        <mrna_strand>TCCTTCGCCCATCATCTCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATATGAGCTGAAAATAGTGGAAAAGCGAGTGGAAGAAACTCATGAACCTCCCGTGTTGCTCTTAATGAAAGAATTCTTTCCTCCTTGTCACGAAAATCTATTGCTGCTGATCCATGGCATGACCTACAGATTG..............................................................................................................................................................................................................GGCCAAGTGCACCTTCAGTTTTCAACTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAATACGCAAAGGCAGCATAGTCAAATATGAGCTTGACAAGGCATGTGGCCTTATAAAG.......................................................................................................................GTTGACCGAGTACTGTCCTCTTCACATGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGGGATCCAATGGACGTCTTGGTTCTGATGCAT......................................................................................................................GAACCTGTGTTACCAAGTACCTTTCTTCTTGCTCATGCAATTGGATTGATGCCTATGATTGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314054" ref_strand="+" ref_description="SGN-E314054 [cTOA-19-M17]">
      <seq>tctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctagagattgggccaggtgcaccttcagttttcaactgtgtggttgaaataggcaaaggcagcaaagtcaagtatgagcttgacaaggcaagtggccttataaaggttgaccgaatactgtactcatcagttgtttatccacacaactatggtttcattccaagaaccctttgcgaagacagtgatccaatggacgtcttggtactgatgcaggaacctgtgttaccaagtacctttcttcgtgctcgtgcaattggattgatgcctatgattgatcagggtgagaaagatgacaagataatagcagtgtgtgcagatgatcccgagtttcgccactacacagacatcaaggagcttcctcctcatcgtcttgctgaaattcggcgcttttttgaagactattaaaagaatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="26557" stop="28990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="141" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27199" g_stop="27227" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="170" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27228" i_stop="27686" i_length="459">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27687" g_stop="27752" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="236" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27753" i_stop="27871" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.514" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27872" g_stop="27979" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="344" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27980" i_stop="28097" i_length="118">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28098" g_stop="28163" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="410" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28164" i_stop="28567" i_length="404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28568" g_stop="28688" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="531" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28689" i_stop="28945" i_length="257">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28946" g_stop="28961" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="547" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E314054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27227"/>
          <exon e_start="27687" e_stop="27752"/>
          <exon e_start="27872" e_stop="27979"/>
          <exon e_start="28098" e_stop="28163"/>
          <exon e_start="28568" e_stop="28688"/>
          <exon e_start="28946" e_stop="28961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGTCGGGGGATATAGTCCCAACTCCCAAGTACTACACAGATGGCATTGAGTTTCACGCAAACTTATATCTTAAAGAGTTATTTGGCAGGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAGGTGCTATTTTAACCCAGTGATCTTTAATTCTTTCCAGCCTTTTGAAATTCATTTAAGAGTTTTCATGGTTATGATAATCATTTGACCGAATACTGAATTGCTGAACTTGTGTCTAAAAGGTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAGGTATATCTTTGTTTACACATGCACATACACACATCTTCCTTGGGCCCAATCTAGCATTACTTGCCTCAGTGTAACCTTATTCCTAGGTACTCTTACATCCATGCTATATGTTGTATAGGAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAGGTAAGGTTTTTCAATCGAGTAAACTTTCTGCCACATGTACTTTAGGATATTGAAAATTGCTGAACAAAAAAAAACATTTGCTTATAAAAAATCTGATAGTTTAGTTTTAATTTCCTTAAGTTTTGTTGTGTACATATTTTAACCTTGAGAGGTCAATACACTTGATAACTTCTCCCTTTGTCAACTTGATGAAGGGTGGTGATAACTTCTCATCCGTTGCAGTTGATAGAAAACTATGAGAGGGAATATTGAAACCAGAATTAGAATTTTAGTAGACACAAACCAAATAACTTGGTTGTGTGTGACATTGTGGCACCACAGTTATATTTCCCTTTTTTGTGAGTGAATTGCAACAACTATAGCAAAATATGGAATAACTGATAGATATTAATGCTCTGTTACAGGGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTTTGAAGACTGTATCCTCGATATGGCATTTCGTCATGCATTAATTTAAGAAGGAAATACTCCATATTCATCCTGATAGGTCTGAGGCTGCTGGATGTGTATGGAGGATTCTGGGTTTATATGTCACCCCAATGGGTGTCTATTTCCATTTCTTATAAATTTCAAGAATATATTTAAGACCATGTTTGCATATCGTAAGGCTTTTGACACCTTTGCTAGGGTATGTATCTACTGTTTCTGCTATAGATCCTTGACTCTCTATCAACAGATAAAAAGAATGAGAA</genome_strand>
        <mrna_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAG.......................................................................................................................GTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAG......................................................................................................................GAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTTTGAAGACT.................................................................................................................................................................................................................................................................ATTAAAAGAATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232127" ref_strand="+" ref_description="SGN-E232127 [cLED-7-P14]">
      <seq>tctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctagagattgggccaggtgcaccttcagttttcaactgtgtaagtgtttaagtgccagtaattcttttctgaaattatttgataaggtacttaagttactccgacaaccataaccttcttatctggctgtatttgtccacttcttttttgttagtagtgattttcattctttccagaagatcatttattaagttcaaagcaaaggtgtttcaatatatgtatactggtttactctttttgtttatctagtcaatagtggtctttgaatatttctacagttctcaactggaaatatataacaatgattggcagtttcacatacaggaaaaaaattctaatgatatattcctacctgctatctcacacgggcttgcacacccattattatctctgtgatagttgtgattatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="26557" stop="27901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="141" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27199" g_stop="27601" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="544" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E232127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGT</genome_strand>
        <mrna_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATGTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231207" ref_strand="+" ref_description="SGN-E231207 [cLED-5-O4]">
      <seq>tctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctagagattgggccaggtgcaccttcagttttcaactgtgtaagtgtttaagtgccagtaattcttttctgaaattatttgataaggtacttaagttactccgacaaccataaccttcttatctggctgtatttgtccacttcttttttgttagtagtgattttcattctttccagaagaatcatttattaagttcaaagcaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="26557" stop="27693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="141" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27199" g_stop="27393" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="337" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E231207" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAG-ATCATTTATTAAGTTCAAAGCAAAGG</genome_strand>
        <mrna_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGAATCATTTATTAAGTTCAAAGCAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231115" ref_strand="+" ref_description="SGN-E231115 [cLED-5-P4]">
      <seq>tctctttaaatatggctgaaaatagtggaaaagcgattggaagaaactcaggaacctcccgtgttgcgcttaatgaaagaattctttcctccatgtcacgaaaatctattgctgctcatccatggcatgacctagagattgggccaggtgcaccttcagttttcaactgtgtaagtgtttaagtgccagtaattcttttctgaaattatttgataaggtacttaagttactccgacaaccataacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="26557" stop="27604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26857" g_stop="26992" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="141" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206">
            <donor d_prob="0.563" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27199" g_stop="27304" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="247" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E231115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26857" e_stop="26992"/>
          <exon e_start="27199" e_stop="27304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTGGTAACAATAGTTATTTAATTCTTGCAACAAGAAAAACGAAAGAAAAGAAGTAGACAATCTATTTTGGTGAATTTGCTTTTAATCAGCATTAGTATAATACGATTATCCATTTCAGTGTCTGGTGTTATTTCATGGTCTTGTTATACATTGCACTGTATGGGGCTTGGTGTCTTTTTGTACTTATGTTTGATGTTCTGCTTGTGCAGGGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCT</genome_strand>
        <mrna_strand>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG..............................................................................................................................................................................................................GGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252103" ref_strand="+" ref_description="SGN-E252103 [cLEG-8-E19]">
      <seq>tcacactggcttgcacacccattattatctctgtgatggttgtgattatttggggggggatatagtcccaactcccaagtactacacagatggcattgagtttcacgcaaacttatatcttaaagagttatttggcaggtggttgaaataggcaaaggcagcaaagtcaagtatgagcttgacaaggcaagtggccttataaaggttgaccgaatactgtactcatcagttgtttatccacacaactatggtttcattccaagaaccctttgcgaagacagtgatccaatggacgtcttggtactgatgcaggaacctgtgttaccaagtacctttcttcgtgctcgtgcaattggattgatgcctatgattgatcagggtgagaaagatgacaagataatagcagtgtgtgcagatgatcccgagtttcgccactacacagacatcaaggagcttcctcctcatcgtcttgctgaaattcggcgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="27249" stop="28980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27549" g_stop="27752" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27753" i_stop="27871" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.514" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27872" g_stop="27979" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="312" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27980" i_stop="28097" i_length="118">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28098" g_stop="28163" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="378" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28164" i_stop="28567" i_length="404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28568" g_stop="28680" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="491" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E252103" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27549" e_stop="27752"/>
          <exon e_start="27872" e_stop="27979"/>
          <exon e_start="28098" e_stop="28163"/>
          <exon e_start="28568" e_stop="28680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGTCGGGGGATATAGTCCCAACTCCCAAGTACTACACAGATGGCATTGAGTTTCACGCAAACTTATATCTTAAAGAGTTATTTGGCAGGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAGGTGCTATTTTAACCCAGTGATCTTTAATTCTTTCCAGCCTTTTGAAATTCATTTAAGAGTTTTCATGGTTATGATAATCATTTGACCGAATACTGAATTGCTGAACTTGTGTCTAAAAGGTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAGGTATATCTTTGTTTACACATGCACATACACACATCTTCCTTGGGCCCAATCTAGCATTACTTGCCTCAGTGTAACCTTATTCCTAGGTACTCTTACATCCATGCTATATGTTGTATAGGAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAGGTAAGGTTTTTCAATCGAGTAAACTTTCTGCCACATGTACTTTAGGATATTGAAAATTGCTGAACAAAAAAAAACATTTGCTTATAAAAAATCTGATAGTTTAGTTTTAATTTCCTTAAGTTTTGTTGTGTACATATTTTAACCTTGAGAGGTCAATACACTTGATAACTTCTCCCTTTGTCAACTTGATGAAGGGTGGTGATAACTTCTCATCCGTTGCAGTTGATAGAAAACTATGAGAGGGAATATTGAAACCAGAATTAGAATTTTAGTAGACACAAACCAAATAACTTGGTTGTGTGTGACATTGTGGCACCACAGTTATATTTCCCTTTTTTGTGAGTGAATTGCAACAACTATAGCAAAATATGGAATAACTGATAGATATTAATGCTCTGTTACAGGGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTT</genome_strand>
        <mrna_strand>TCACACTGGCTTGCACACCCATTATTATCTCTGTGATGGTTGTGATTATTTGGGGGGGGATATAGTCCCAACTCCCAAGTACTACACAGATGGCATTGAGTTTCACGCAAACTTATATCTTAAAGAGTTATTTGGCAGGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAG.......................................................................................................................GTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAG......................................................................................................................GAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221747" ref_strand="+" ref_description="SGN-E221747 [cLEL-10-D8](-)">
      <seq>actgtagatgccatcaagtattccatggacctgtatgcttcttacattgtggaaagtttgaggaagtggccttgttgaggacctgttgtcactactgaaaatcgaagcagaaaagccagttttcttgttgccgatggctccctgaatttcatatgcatactttagtttaatgtggtagtatcaaatactatttgaaatgcatgtaggactttcaattttcatgaattcagtaaagacgtggaacagaaagcatcaagtaaaccactggtaatgtgcagtggtagtgctgtagaaaaaatgtttgcttagtctcagcatctacaaaagttttcaacatattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="28703" stop="29745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29002" g_stop="29027" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29028" i_stop="29128" i_length="101">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.887" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29129" g_stop="29445" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="343" r_length="317" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="359"/>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E221747" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29002" e_stop="29027"/>
          <exon e_start="29129" e_stop="29445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAGATGCCATCAAGTATTCCATGTCAGTTATTTTGAATTCTCTCATGTTGTAAGATTGTTTATTCTTTTGTGTTATCAATTTTCCTAACCAAAAAATATTCATCTCCACGGTTGTGATCGCAGGGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGAAAATCGAAGCAGAAAAGCCAGTTGACTTGTTGACGATGGCTCCCTGAATTTCATATGCATACTTTAGTTTAATGTGGTAGTATCAAATACTATTTGAAATGCATGTAGAACTTTCAATTTTCATGAATTCAGTAAAGACGTGGAACAGAAAGCATCAAGAAAACCACTGGTAATGTGCAGTGGTAGTGCTGTAGAAAAAATGTTTGCTTAGTCTCAGCATCTACAAAAGTTTACAACATATTGAA</genome_strand>
        <mrna_strand>ACTGTAGATGCCATCAAGTATTCCAT.....................................................................................................GGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGGCCTTGTTGAGGACCTGTTGTCACTACTGAAAATCGAAGCAGAAAAGCCAGTTTTCTTGTTGCCGATGGCTCCCTGAATTTCATATGCATACTTTAGTTTAATGTGGTAGTATCAAATACTATTTGAAATGCATGTAGGACTTTCAATTTTCATGAATTCAGTAAAGACGTGGAACAGAAAGCATCAAGTAAACCACTGGTAATGTGCAGTGGTAGTGCTGTAGAAAAAATGTTTGCTTAGTCTCAGCATCTACAAAAGTTTTCAACATATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221675" ref_strand="+" ref_description="SGN-E221675 [cLEL-10-D8](-)">
      <seq>tgccatcaagtattccatggacctgtatgcttcttacattgtggaaagtttgaggaagtgaccttgttgaggacttgttgtcactactgaaaatcgaagcagaaaagccagttgacttgttgacgatggctccctgaatttcatatgcatactttagtttaatgtggtagtatcaaacactatttgaaatgcatgtagaactttcaattttcatgaattcagtaaagacgtggaacagaaagcatcaagaaaaccactggtaatgtgcagtggtagtgctgtagaaaaaatgtttgcttagtctcagcatctacaaaagtttacaacatattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="28819" stop="29745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29010" g_stop="29027" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29028" i_stop="29128" i_length="101">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29129" g_stop="29445" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="335" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="351"/>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E221675" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29010" e_stop="29027"/>
          <exon e_start="29129" e_stop="29445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCAAGTATTCCATGTCAGTTATTTTGAATTCTCTCATGTTGTAAGATTGTTTATTCTTTTGTGTTATCAATTTTCCTAACCAAAAAATATTCATCTCCACGGTTGTGATCGCAGGGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGAAAATCGAAGCAGAAAAGCCAGTTGACTTGTTGACGATGGCTCCCTGAATTTCATATGCATACTTTAGTTTAATGTGGTAGTATCAAATACTATTTGAAATGCATGTAGAACTTTCAATTTTCATGAATTCAGTAAAGACGTGGAACAGAAAGCATCAAGAAAACCACTGGTAATGTGCAGTGGTAGTGCTGTAGAAAAAATGTTTGCTTAGTCTCAGCATCTACAAAAGTTTACAACATATTGAA</genome_strand>
        <mrna_strand>TGCCATCAAGTATTCCAT.....................................................................................................GGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGAAAATCGAAGCAGAAAAGCCAGTTGACTTGTTGACGATGGCTCCCTGAATTTCATATGCATACTTTAGTTTAATGTGGTAGTATCAAACACTATTTGAAATGCATGTAGAACTTTCAATTTTCATGAATTCAGTAAAGACGTGGAACAGAAAGCATCAAGAAAACCACTGGTAATGTGCAGTGGTAGTGCTGTAGAAAAAATGTTTGCTTAGTCTCAGCATCTACAAAAGTTTACAACATATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729669" ref_strand="+" ref_description="SGN-E729669 [LA21DA06]">
      <seq>gttaaaacgagagcactcaataggagtcggggtttgggttcagctcacttcaccttttgccctttgtggtatcaacgctcctcatttctcaactcctcagctaaataatcaaacaaatatacgtttgaatttggagaaatccggttgtggaatcggaagcaatagaggatgggttcggcgatgaaagcaatctacaccgttggattctggatccgtgagacaggccaagcccttgatcggttgggctgccgcctccagggaaactattacttccaagaacacctctcgaggcatagaactttgatgaacctgtttgacaaagtaccagttgttgagaaagatgcatttgtggccccaagtgcctctataattggtgatgttcacattggtcgtagtgcttctatttggtatgggtgtgttctgcgaggtgatgtgaacagtgtcagcattggagccggaactaatgtccaggacaattctctaatccatgtagctaaatcgaatatcagtggaaaggttttgcctacgataattggcaaaaatgttaccataggtcatagcgctgtgttacatggatgtactgttgaagacgaggcatttattggtatgggtgcaaccgtgcttgatggagctgttgtggagaaaaatgctatggtcgctgctggtgcccatgtaagacagaatacaaggattccattcggagaggtctggggaggaaatccagcgaggttcttgaggaagctcacagaagaagaaatagcgttcatctcagagtcagccgcaaactattctaatttagcgcaggttcatgcagctgaaaatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="30505" stop="35928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30805" g_stop="31087" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32478" g_stop="32621" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="427" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34770" g_stop="34895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="553" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34988" g_stop="35139" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="705" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35140" i_stop="35507" i_length="368">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35508" g_stop="35628" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="826" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E729669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30805" e_stop="31087"/>
          <exon e_start="32478" e_stop="32621"/>
          <exon e_start="34770" e_stop="34895"/>
          <exon e_start="34988" e_stop="35139"/>
          <exon e_start="35508" e_stop="35628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAACGAGAGCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACCGTACGTCTCTTCTTTCTCCTCACTTCTTCACATCTATCACCTTTAAACATGTTATGTTTTCATATAACCCACAATTAGGGCTTTAGCTATTTGAACGATACACATTAGTTCAAGTCACAGAACGCTTTCAATTGTATAAATTCATTAGGCTTCGTTCTGCCATTTCTATTTAGCTGCATTTTCTGCACTCTGTTGTCTGAACATTAATTTTATTAGCTCAGATAGCACCGTGAAGGTGACATTTCAATGTTTGATGACAAGTAGTGAAGTTTTAGTTTTTTTTTGAGCTGCATAGAGCTATTAGCATCTGACTATCTCTTATTAGGGGATAATCCTTTCTTGATAAATGTCGACTTATGTAGAGTAATTTTTCTCTTGTCTATTTCCCTTTAAAATCTACGAATGGATACTTTCCCTTTTAGTTTCAGGAAAAAGAATGTTGTTATATTGATAAATAAAGTAAAACGACCGCTTCGTAAAGCTAGAAAGAATTAAGTGACATCAAATTTCATTGGCATTTTATATTTTCTCCATTCCAAACAGTCATTCAATGCTCTAACTTTGAAAGTGTAGTTTCAAAGTAATTTTCCTGATTATCGGTCTCAAGGAGATGGATTGGTGGTTGCGGCATAAAATAACAACCTAGAGATCTTAGGTATGAATTCCCCTTTGACGCTTAGTATGAACTTACTTCACAACCTTGGTGCACAAGGATTTCCTGTCACTTGTGGTTGTGGGCTGTAGTAGGGCGCTGTAGTTGAAGTTACAATTTTTTGCTTAAGAAAAATAAGGTCGATTACAAGTATTGTTGATTCAAGGTTATCAAGAGTGATGAGTGATCATGTAGGGTTGTTAATTTGAAGGCTGCTCATGATACTTAGTACTTATAGCATGGTATTACTATGACATATATGATCTATCTTACAATATGTCTAACAACAATCCGAGAGCTAGATTATTAATTCTGATCTCACCCAGTTCTCATTAACCATGCCCGCAACATTGTGACTAGCATAAGTAGCTCGGGTCAATTTTGATGAATTATTAGTCTATAAATATTTTCATCTGGGTGAGTCACTGAGGCTTGGGATCTTTGACAAGCATTCCACCGGTGTCGATTGTGATGATCTTAGTTACATTCATATTTATTCACAATCAGCCAATCTCACCATCTTAGGTTCTGTTCTCTATGTTTGGCTGTACTTCTAGAATTATTTCCTAGTCTTCTACTCATTCCTGTGTTCTGTTGTTATATGGTTTTCCTCTTTATGTCAAACCACATATTTTTTATTTCATGTCTAAACTTATTGGTTGTTGATGTGCTTTCTCCAATATGCAGCATGCCTTCTTGCTTTAACGTTTTTTATTCTCTACCTCTTTTTTATTCCAGTCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAGGTATGTTTTGCTTCTGCATATGATGGTAGTGTCAGTGCTGCTTTATTAAAAAAAGGTAGTGTCAGTGCTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTTAAGGTGTACCCGAACACCAGTTGTGAACAATAATATCGGGCTTTATAAAAGATACAAGACTCAATTAATTTGGACGAATCTGAACTGAATAAGTCTCTTGAATTGGAATATGAAAAAATTGGTTGAAAGAACCCAATAGAAATTGGCATTGAGGAATGAGGATTGGCACTGAGGATATCTGGACAAGTCTGCACTTGAGCAGAAGGTCTTTCAAAAACAACCTCTCTACCTCCACTAGGTAGGGGTAAGGTTTGCGTACCCTCCCCAGATCTCACTTGTGGTTTTACATTGGGTATGTTGTTGTTGTTATGTACTTAGTTTTAACAATTCAAAAAAATAATTTAAAGAAATGATGTAGGCCATTTATGCTTTTACGATCTAAATATGACTTAAGATTTTGGGGTTTGTGATAAACTTAATGTGTAGATCTCAACGAAACTCAAAGTTGTGGACTCATGGTACGATCATTCTTAATTTTGAGAACTTCTAGCTATCAAGAGTACTATGCTACTCTTTGACGAGTTAAGAATTGTATTGAAAACTTCATGTATAGCACAAGCGAAGACTGGCAGCACTTGATAAATATAGTTTTTTCCCTAATCCCTATATAACAATCATAATCTATATATGTTTTTTAAAAGTGACGGTGGTTTCATTACAACTTACATGTACATTCATGAGTGATGACAAAGGTGAGTTTCATTTTAGAAGAGAAATTAGTAAACTTTTCTGTTGCAGCGAAAACATGTTTTTCTCTAAAAATAAAATTTGTCAAATAATTCTCTTTTTTGAATATTGATCTTTGAGAGGATGTTCACGTATGAAAAGGTCAAATTTGTGAAATAAAAGATTGCTATAGGACTATTTATCAGACAATTATCTGCTTCCACCCAATGGTATTATTAGAAATATCAAATTAGATTGGACCTGATAACTTGGGCTCATTCAAAGTTGAAACTTATATTATTTGTTCAGGGACAAGACACAAAGCCCAAACATGCCTTCACTCAGGCAACTCTACTTTTGACTTACTCCACAAGCACTACTCCTTGAATCTCTTTATTGTAATGTTATCTATTGAAAGCTCAATCTACAACTTAGCCGACTGAAATTTCGAGCAAATTTTGGTTTATGCACACTCATGGCAGCCTTTAAATGAAATACTTTGGAAGTATGTGTCTTTCTTAATGCATATTGCCAACGATATTTGACTGAGTGAATATGCTCCCACACGTACAGTATTGAATAAAGTTTTGTTCCTTCTTCCTTGGTTATAAAACTTACATTGCGCCTCTTATAATATCACCTTGTCCTATCTTAGCTTCCTTAAGGGCAAGAATATGAGTTCTGCATTGGGCTCTAATTCTGTTAAGAAGTTTGGGCTTCAACCAAACTATGATTGCATAGTGTTTTTCCTTTTTGTGTGTGTGGAGTTCCCTGGATGTTTGTGCTCTTTAGTTTTCTTGTTCTTTCTCAACATGAAACTCCGTGCAGGTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAGGTGAGAAATTTCTGGCAATTTAGAGCATAATATACATCTGCCATTAATTTTTGAGTTGGCTTGATGGTTGACTTTTGACATCAAAAAATAAGGTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAGGTTTGTGGCAGACTTAAGTCACTCATTTTGCCATTATTGGGGTTTTTGCGCATGTGTACAAGTTCCTACATGGGTATTTACCAATTGGTGAAAAAAATATTATTTGTTCATACTGATGCTAGTTTCCATGTTAATCTTTAGTAAGTTGTTTAACCTCCCTATTATACACTTGTGAAACTGTGCATGTAACTGTTGACAAATGGACGAAGATTTGTTAGGATGTGGACTGATACAAGGAATTCCCAAAGAAAAGCCCGTCCCTTCCCTAGTTGTCTTGTATTCTAGCTTGTTATGAAATATGTAGTGAATTTTTTCGTTGCAAATTTCAACTTGCTCACATGTGTAATTATGACAACTAAAAAACACAGGTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGAAGCTCACAGAAGAAGAAATAGCGTTCATCTCAGAGTCAGCCGCAAACTATTCTAATTTAGCGCAGGTTCATGCAGCTGAAAATGCAA</genome_strand>
        <mrna_strand>GTTAAAACGAGAGCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAG............................................................................................GTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAG................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGAAGCTCACAGAAGAAGAAATAGCGTTCATCTCAGAGTCAGCCGCAAACTATTCTAATTTAGCGCAGGTTCATGCAGCTGAAAATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274428" ref_strand="+" ref_description="SGN-E274428 [cLEN-19-E23]">
      <seq>taaaacgagatcactcaataggagtcggggtttgggttcagctcacttcaccttttgccctttgtggtatcaacgctcctcatttctcaactcctcagctaaataatcaaacaaatatacgtttgaatttggagaaatccggttgtggaatcggaagcaatagaggatgggttcggcgatgaaagcaatctacaccgttggattctggatccgtgagacaggccaagcccttgatcggttgggctgccgcctccagggaaactattacttccaagaacacctctcgaggcatagaactttgatgaacctgtttgacaaagtaccagttgttgagaaagatgcatttgtggccccaagtgcctctataattggtgatgttcacattggtcgtagtgcttctatttggtatgggtgtgttctgcgaggtgatgtgaacagtgtcagcattggagccggaactaatgtccaggacaattctctaatccatgtagctaaatcgaatatcagtggaaaggttttgcctacgataattggcaaaaatgttaccataggtcatagcgctgcgttacatggatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="30507" stop="35316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30807" g_stop="31087" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32478" g_stop="32621" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="425" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34770" g_stop="34895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="551" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34988" g_stop="35016" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="580" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E274428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30807" e_stop="31087"/>
          <exon e_start="32478" e_stop="32621"/>
          <exon e_start="34770" e_stop="34895"/>
          <exon e_start="34988" e_stop="35016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACGAGAGCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACCGTACGTCTCTTCTTTCTCCTCACTTCTTCACATCTATCACCTTTAAACATGTTATGTTTTCATATAACCCACAATTAGGGCTTTAGCTATTTGAACGATACACATTAGTTCAAGTCACAGAACGCTTTCAATTGTATAAATTCATTAGGCTTCGTTCTGCCATTTCTATTTAGCTGCATTTTCTGCACTCTGTTGTCTGAACATTAATTTTATTAGCTCAGATAGCACCGTGAAGGTGACATTTCAATGTTTGATGACAAGTAGTGAAGTTTTAGTTTTTTTTTGAGCTGCATAGAGCTATTAGCATCTGACTATCTCTTATTAGGGGATAATCCTTTCTTGATAAATGTCGACTTATGTAGAGTAATTTTTCTCTTGTCTATTTCCCTTTAAAATCTACGAATGGATACTTTCCCTTTTAGTTTCAGGAAAAAGAATGTTGTTATATTGATAAATAAAGTAAAACGACCGCTTCGTAAAGCTAGAAAGAATTAAGTGACATCAAATTTCATTGGCATTTTATATTTTCTCCATTCCAAACAGTCATTCAATGCTCTAACTTTGAAAGTGTAGTTTCAAAGTAATTTTCCTGATTATCGGTCTCAAGGAGATGGATTGGTGGTTGCGGCATAAAATAACAACCTAGAGATCTTAGGTATGAATTCCCCTTTGACGCTTAGTATGAACTTACTTCACAACCTTGGTGCACAAGGATTTCCTGTCACTTGTGGTTGTGGGCTGTAGTAGGGCGCTGTAGTTGAAGTTACAATTTTTTGCTTAAGAAAAATAAGGTCGATTACAAGTATTGTTGATTCAAGGTTATCAAGAGTGATGAGTGATCATGTAGGGTTGTTAATTTGAAGGCTGCTCATGATACTTAGTACTTATAGCATGGTATTACTATGACATATATGATCTATCTTACAATATGTCTAACAACAATCCGAGAGCTAGATTATTAATTCTGATCTCACCCAGTTCTCATTAACCATGCCCGCAACATTGTGACTAGCATAAGTAGCTCGGGTCAATTTTGATGAATTATTAGTCTATAAATATTTTCATCTGGGTGAGTCACTGAGGCTTGGGATCTTTGACAAGCATTCCACCGGTGTCGATTGTGATGATCTTAGTTACATTCATATTTATTCACAATCAGCCAATCTCACCATCTTAGGTTCTGTTCTCTATGTTTGGCTGTACTTCTAGAATTATTTCCTAGTCTTCTACTCATTCCTGTGTTCTGTTGTTATATGGTTTTCCTCTTTATGTCAAACCACATATTTTTTATTTCATGTCTAAACTTATTGGTTGTTGATGTGCTTTCTCCAATATGCAGCATGCCTTCTTGCTTTAACGTTTTTTATTCTCTACCTCTTTTTTATTCCAGTCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAGGTATGTTTTGCTTCTGCATATGATGGTAGTGTCAGTGCTGCTTTATTAAAAAAAGGTAGTGTCAGTGCTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTTAAGGTGTACCCGAACACCAGTTGTGAACAATAATATCGGGCTTTATAAAAGATACAAGACTCAATTAATTTGGACGAATCTGAACTGAATAAGTCTCTTGAATTGGAATATGAAAAAATTGGTTGAAAGAACCCAATAGAAATTGGCATTGAGGAATGAGGATTGGCACTGAGGATATCTGGACAAGTCTGCACTTGAGCAGAAGGTCTTTCAAAAACAACCTCTCTACCTCCACTAGGTAGGGGTAAGGTTTGCGTACCCTCCCCAGATCTCACTTGTGGTTTTACATTGGGTATGTTGTTGTTGTTATGTACTTAGTTTTAACAATTCAAAAAAATAATTTAAAGAAATGATGTAGGCCATTTATGCTTTTACGATCTAAATATGACTTAAGATTTTGGGGTTTGTGATAAACTTAATGTGTAGATCTCAACGAAACTCAAAGTTGTGGACTCATGGTACGATCATTCTTAATTTTGAGAACTTCTAGCTATCAAGAGTACTATGCTACTCTTTGACGAGTTAAGAATTGTATTGAAAACTTCATGTATAGCACAAGCGAAGACTGGCAGCACTTGATAAATATAGTTTTTTCCCTAATCCCTATATAACAATCATAATCTATATATGTTTTTTAAAAGTGACGGTGGTTTCATTACAACTTACATGTACATTCATGAGTGATGACAAAGGTGAGTTTCATTTTAGAAGAGAAATTAGTAAACTTTTCTGTTGCAGCGAAAACATGTTTTTCTCTAAAAATAAAATTTGTCAAATAATTCTCTTTTTTGAATATTGATCTTTGAGAGGATGTTCACGTATGAAAAGGTCAAATTTGTGAAATAAAAGATTGCTATAGGACTATTTATCAGACAATTATCTGCTTCCACCCAATGGTATTATTAGAAATATCAAATTAGATTGGACCTGATAACTTGGGCTCATTCAAAGTTGAAACTTATATTATTTGTTCAGGGACAAGACACAAAGCCCAAACATGCCTTCACTCAGGCAACTCTACTTTTGACTTACTCCACAAGCACTACTCCTTGAATCTCTTTATTGTAATGTTATCTATTGAAAGCTCAATCTACAACTTAGCCGACTGAAATTTCGAGCAAATTTTGGTTTATGCACACTCATGGCAGCCTTTAAATGAAATACTTTGGAAGTATGTGTCTTTCTTAATGCATATTGCCAACGATATTTGACTGAGTGAATATGCTCCCACACGTACAGTATTGAATAAAGTTTTGTTCCTTCTTCCTTGGTTATAAAACTTACATTGCGCCTCTTATAATATCACCTTGTCCTATCTTAGCTTCCTTAAGGGCAAGAATATGAGTTCTGCATTGGGCTCTAATTCTGTTAAGAAGTTTGGGCTTCAACCAAACTATGATTGCATAGTGTTTTTCCTTTTTGTGTGTGTGGAGTTCCCTGGATGTTTGTGCTCTTTAGTTTTCTTGTTCTTTCTCAACATGAAACTCCGTGCAGGTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAGGTGAGAAATTTCTGGCAATTTAGAGCATAATATACATCTGCCATTAATTTTTGAGTTGGCTTGATGGTTGACTTTTGACATCAAAAAATAAGGTCATAGCGCTGTGTTACATGGATGTACT</genome_strand>
        <mrna_strand>TAAAACGAGATCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAG............................................................................................GTCATAGCGCTGCGTTACATGGATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250697" ref_strand="+" ref_description="SGN-E250697 [cLEG-7-K3]">
      <seq>ttgggttcagctcacttcaccttttgccctttgtggtatcaacgctcctcattgctcaactcctcagctaaataatcaaacaaatatacgtttgaatttggagaaatccggttgtggaatcggaagcaatagaggatgggttcggcgatgaaagcaatctacaccgttggattctggatccgtgagacaggccaagcccttgatcggttgggctgccgcctccagggaaactattacttccaagaacacctctcgaggcatagaactttgatgaacctgtttgacaaagtaccagttgttgagaaagatgcatttgtggccccaagtgcctctataattggtgatgttcacattggtcgtagtgcttctatttggtatgggtgtgttctgcgaggtgatgtgaacagtgtcagcattggagccggaactaatgtccaggacaattctctaatccatgtagctaaatcgaatatcagtggaaaggttttgcctacgataattggcaaaaatgttaccataggtcataacgctgtgttacatggatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="30538" stop="35314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30838" g_stop="31087" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32478" g_stop="32621" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="394" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34770" g_stop="34895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="520" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34988" g_stop="35014" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="547" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E250697" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30838" e_stop="31087"/>
          <exon e_start="32478" e_stop="32621"/>
          <exon e_start="34770" e_stop="34895"/>
          <exon e_start="34988" e_stop="35014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACCGTACGTCTCTTCTTTCTCCTCACTTCTTCACATCTATCACCTTTAAACATGTTATGTTTTCATATAACCCACAATTAGGGCTTTAGCTATTTGAACGATACACATTAGTTCAAGTCACAGAACGCTTTCAATTGTATAAATTCATTAGGCTTCGTTCTGCCATTTCTATTTAGCTGCATTTTCTGCACTCTGTTGTCTGAACATTAATTTTATTAGCTCAGATAGCACCGTGAAGGTGACATTTCAATGTTTGATGACAAGTAGTGAAGTTTTAGTTTTTTTTTGAGCTGCATAGAGCTATTAGCATCTGACTATCTCTTATTAGGGGATAATCCTTTCTTGATAAATGTCGACTTATGTAGAGTAATTTTTCTCTTGTCTATTTCCCTTTAAAATCTACGAATGGATACTTTCCCTTTTAGTTTCAGGAAAAAGAATGTTGTTATATTGATAAATAAAGTAAAACGACCGCTTCGTAAAGCTAGAAAGAATTAAGTGACATCAAATTTCATTGGCATTTTATATTTTCTCCATTCCAAACAGTCATTCAATGCTCTAACTTTGAAAGTGTAGTTTCAAAGTAATTTTCCTGATTATCGGTCTCAAGGAGATGGATTGGTGGTTGCGGCATAAAATAACAACCTAGAGATCTTAGGTATGAATTCCCCTTTGACGCTTAGTATGAACTTACTTCACAACCTTGGTGCACAAGGATTTCCTGTCACTTGTGGTTGTGGGCTGTAGTAGGGCGCTGTAGTTGAAGTTACAATTTTTTGCTTAAGAAAAATAAGGTCGATTACAAGTATTGTTGATTCAAGGTTATCAAGAGTGATGAGTGATCATGTAGGGTTGTTAATTTGAAGGCTGCTCATGATACTTAGTACTTATAGCATGGTATTACTATGACATATATGATCTATCTTACAATATGTCTAACAACAATCCGAGAGCTAGATTATTAATTCTGATCTCACCCAGTTCTCATTAACCATGCCCGCAACATTGTGACTAGCATAAGTAGCTCGGGTCAATTTTGATGAATTATTAGTCTATAAATATTTTCATCTGGGTGAGTCACTGAGGCTTGGGATCTTTGACAAGCATTCCACCGGTGTCGATTGTGATGATCTTAGTTACATTCATATTTATTCACAATCAGCCAATCTCACCATCTTAGGTTCTGTTCTCTATGTTTGGCTGTACTTCTAGAATTATTTCCTAGTCTTCTACTCATTCCTGTGTTCTGTTGTTATATGGTTTTCCTCTTTATGTCAAACCACATATTTTTTATTTCATGTCTAAACTTATTGGTTGTTGATGTGCTTTCTCCAATATGCAGCATGCCTTCTTGCTTTAACGTTTTTTATTCTCTACCTCTTTTTTATTCCAGTCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAGGTATGTTTTGCTTCTGCATATGATGGTAGTGTCAGTGCTGCTTTATTAAAAAAAGGTAGTGTCAGTGCTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTTAAGGTGTACCCGAACACCAGTTGTGAACAATAATATCGGGCTTTATAAAAGATACAAGACTCAATTAATTTGGACGAATCTGAACTGAATAAGTCTCTTGAATTGGAATATGAAAAAATTGGTTGAAAGAACCCAATAGAAATTGGCATTGAGGAATGAGGATTGGCACTGAGGATATCTGGACAAGTCTGCACTTGAGCAGAAGGTCTTTCAAAAACAACCTCTCTACCTCCACTAGGTAGGGGTAAGGTTTGCGTACCCTCCCCAGATCTCACTTGTGGTTTTACATTGGGTATGTTGTTGTTGTTATGTACTTAGTTTTAACAATTCAAAAAAATAATTTAAAGAAATGATGTAGGCCATTTATGCTTTTACGATCTAAATATGACTTAAGATTTTGGGGTTTGTGATAAACTTAATGTGTAGATCTCAACGAAACTCAAAGTTGTGGACTCATGGTACGATCATTCTTAATTTTGAGAACTTCTAGCTATCAAGAGTACTATGCTACTCTTTGACGAGTTAAGAATTGTATTGAAAACTTCATGTATAGCACAAGCGAAGACTGGCAGCACTTGATAAATATAGTTTTTTCCCTAATCCCTATATAACAATCATAATCTATATATGTTTTTTAAAAGTGACGGTGGTTTCATTACAACTTACATGTACATTCATGAGTGATGACAAAGGTGAGTTTCATTTTAGAAGAGAAATTAGTAAACTTTTCTGTTGCAGCGAAAACATGTTTTTCTCTAAAAATAAAATTTGTCAAATAATTCTCTTTTTTGAATATTGATCTTTGAGAGGATGTTCACGTATGAAAAGGTCAAATTTGTGAAATAAAAGATTGCTATAGGACTATTTATCAGACAATTATCTGCTTCCACCCAATGGTATTATTAGAAATATCAAATTAGATTGGACCTGATAACTTGGGCTCATTCAAAGTTGAAACTTATATTATTTGTTCAGGGACAAGACACAAAGCCCAAACATGCCTTCACTCAGGCAACTCTACTTTTGACTTACTCCACAAGCACTACTCCTTGAATCTCTTTATTGTAATGTTATCTATTGAAAGCTCAATCTACAACTTAGCCGACTGAAATTTCGAGCAAATTTTGGTTTATGCACACTCATGGCAGCCTTTAAATGAAATACTTTGGAAGTATGTGTCTTTCTTAATGCATATTGCCAACGATATTTGACTGAGTGAATATGCTCCCACACGTACAGTATTGAATAAAGTTTTGTTCCTTCTTCCTTGGTTATAAAACTTACATTGCGCCTCTTATAATATCACCTTGTCCTATCTTAGCTTCCTTAAGGGCAAGAATATGAGTTCTGCATTGGGCTCTAATTCTGTTAAGAAGTTTGGGCTTCAACCAAACTATGATTGCATAGTGTTTTTCCTTTTTGTGTGTGTGGAGTTCCCTGGATGTTTGTGCTCTTTAGTTTTCTTGTTCTTTCTCAACATGAAACTCCGTGCAGGTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAGGTGAGAAATTTCTGGCAATTTAGAGCATAATATACATCTGCCATTAATTTTTGAGTTGGCTTGATGGTTGACTTTTGACATCAAAAAATAAGGTCATAGCGCTGTGTTACATGGATGTA</genome_strand>
        <mrna_strand>TTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTGCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAG............................................................................................GTCATAACGCTGTGTTACATGGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305758" ref_strand="+" ref_description="SGN-E305758 [cLEX-14-G24]">
      <seq>ctttgtggtatcaacgctcctcatttctcaactcctcagctaaataatcaaacaaatatacgtttgaatttggagaaatccggttgtggaatcggaagcaatagaggatgggttcggcgatgaaagcaatctacaccgttggattctggatccgtgagacaggccaagcccttgatcggttgggctgccgcctccagggaaactattacttccaagaacacctctcgaggcatagaactttgatgaacctgtttgacaaaataccaattgttgagaaagatgcatttgtggccccaagagcctctataattggtgatgttcacattgggcgtagggcttctatttggtatgggtgtgttctgcgaggtgatgtgaacagtgtcagcattggagccggaactaatgtccaggacaattctctaatccatgtagctaaatcgaatatcagtggaaaggttttgcctacgataattggccaaaatgttaccataggtcataacgctgggttacatggatgtactgttgaagacgaggcatttattggtatgggtgcaaccgcgcttgatggagctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="30566" stop="35371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30866" g_stop="31087" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32478" g_stop="32621" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="366" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34770" g_stop="34895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="492" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.668" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34988" g_stop="35071" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="576" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E305758" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30866" e_stop="31087"/>
          <exon e_start="32478" e_stop="32621"/>
          <exon e_start="34770" e_stop="34895"/>
          <exon e_start="34988" e_stop="35071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACCGTACGTCTCTTCTTTCTCCTCACTTCTTCACATCTATCACCTTTAAACATGTTATGTTTTCATATAACCCACAATTAGGGCTTTAGCTATTTGAACGATACACATTAGTTCAAGTCACAGAACGCTTTCAATTGTATAAATTCATTAGGCTTCGTTCTGCCATTTCTATTTAGCTGCATTTTCTGCACTCTGTTGTCTGAACATTAATTTTATTAGCTCAGATAGCACCGTGAAGGTGACATTTCAATGTTTGATGACAAGTAGTGAAGTTTTAGTTTTTTTTTGAGCTGCATAGAGCTATTAGCATCTGACTATCTCTTATTAGGGGATAATCCTTTCTTGATAAATGTCGACTTATGTAGAGTAATTTTTCTCTTGTCTATTTCCCTTTAAAATCTACGAATGGATACTTTCCCTTTTAGTTTCAGGAAAAAGAATGTTGTTATATTGATAAATAAAGTAAAACGACCGCTTCGTAAAGCTAGAAAGAATTAAGTGACATCAAATTTCATTGGCATTTTATATTTTCTCCATTCCAAACAGTCATTCAATGCTCTAACTTTGAAAGTGTAGTTTCAAAGTAATTTTCCTGATTATCGGTCTCAAGGAGATGGATTGGTGGTTGCGGCATAAAATAACAACCTAGAGATCTTAGGTATGAATTCCCCTTTGACGCTTAGTATGAACTTACTTCACAACCTTGGTGCACAAGGATTTCCTGTCACTTGTGGTTGTGGGCTGTAGTAGGGCGCTGTAGTTGAAGTTACAATTTTTTGCTTAAGAAAAATAAGGTCGATTACAAGTATTGTTGATTCAAGGTTATCAAGAGTGATGAGTGATCATGTAGGGTTGTTAATTTGAAGGCTGCTCATGATACTTAGTACTTATAGCATGGTATTACTATGACATATATGATCTATCTTACAATATGTCTAACAACAATCCGAGAGCTAGATTATTAATTCTGATCTCACCCAGTTCTCATTAACCATGCCCGCAACATTGTGACTAGCATAAGTAGCTCGGGTCAATTTTGATGAATTATTAGTCTATAAATATTTTCATCTGGGTGAGTCACTGAGGCTTGGGATCTTTGACAAGCATTCCACCGGTGTCGATTGTGATGATCTTAGTTACATTCATATTTATTCACAATCAGCCAATCTCACCATCTTAGGTTCTGTTCTCTATGTTTGGCTGTACTTCTAGAATTATTTCCTAGTCTTCTACTCATTCCTGTGTTCTGTTGTTATATGGTTTTCCTCTTTATGTCAAACCACATATTTTTTATTTCATGTCTAAACTTATTGGTTGTTGATGTGCTTTCTCCAATATGCAGCATGCCTTCTTGCTTTAACGTTTTTTATTCTCTACCTCTTTTTTATTCCAGTCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAGGTATGTTTTGCTTCTGCATATGATGGTAGTGTCAGTGCTGCTTTATTAAAAAAAGGTAGTGTCAGTGCTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTTAAGGTGTACCCGAACACCAGTTGTGAACAATAATATCGGGCTTTATAAAAGATACAAGACTCAATTAATTTGGACGAATCTGAACTGAATAAGTCTCTTGAATTGGAATATGAAAAAATTGGTTGAAAGAACCCAATAGAAATTGGCATTGAGGAATGAGGATTGGCACTGAGGATATCTGGACAAGTCTGCACTTGAGCAGAAGGTCTTTCAAAAACAACCTCTCTACCTCCACTAGGTAGGGGTAAGGTTTGCGTACCCTCCCCAGATCTCACTTGTGGTTTTACATTGGGTATGTTGTTGTTGTTATGTACTTAGTTTTAACAATTCAAAAAAATAATTTAAAGAAATGATGTAGGCCATTTATGCTTTTACGATCTAAATATGACTTAAGATTTTGGGGTTTGTGATAAACTTAATGTGTAGATCTCAACGAAACTCAAAGTTGTGGACTCATGGTACGATCATTCTTAATTTTGAGAACTTCTAGCTATCAAGAGTACTATGCTACTCTTTGACGAGTTAAGAATTGTATTGAAAACTTCATGTATAGCACAAGCGAAGACTGGCAGCACTTGATAAATATAGTTTTTTCCCTAATCCCTATATAACAATCATAATCTATATATGTTTTTTAAAAGTGACGGTGGTTTCATTACAACTTACATGTACATTCATGAGTGATGACAAAGGTGAGTTTCATTTTAGAAGAGAAATTAGTAAACTTTTCTGTTGCAGCGAAAACATGTTTTTCTCTAAAAATAAAATTTGTCAAATAATTCTCTTTTTTGAATATTGATCTTTGAGAGGATGTTCACGTATGAAAAGGTCAAATTTGTGAAATAAAAGATTGCTATAGGACTATTTATCAGACAATTATCTGCTTCCACCCAATGGTATTATTAGAAATATCAAATTAGATTGGACCTGATAACTTGGGCTCATTCAAAGTTGAAACTTATATTATTTGTTCAGGGACAAGACACAAAGCCCAAACATGCCTTCACTCAGGCAACTCTACTTTTGACTTACTCCACAAGCACTACTCCTTGAATCTCTTTATTGTAATGTTATCTATTGAAAGCTCAATCTACAACTTAGCCGACTGAAATTTCGAGCAAATTTTGGTTTATGCACACTCATGGCAGCCTTTAAATGAAATACTTTGGAAGTATGTGTCTTTCTTAATGCATATTGCCAACGATATTTGACTGAGTGAATATGCTCCCACACGTACAGTATTGAATAAAGTTTTGTTCCTTCTTCCTTGGTTATAAAACTTACATTGCGCCTCTTATAATATCACCTTGTCCTATCTTAGCTTCCTTAAGGGCAAGAATATGAGTTCTGCATTGGGCTCTAATTCTGTTAAGAAGTTTGGGCTTCAACCAAACTATGATTGCATAGTGTTTTTCCTTTTTGTGTGTGTGGAGTTCCCTGGATGTTTGTGCTCTTTAGTTTTCTTGTTCTTTCTCAACATGAAACTCCGTGCAGGTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAGGTGAGAAATTTCTGGCAATTTAGAGCATAATATACATCTGCCATTAATTTTTGAGTTGGCTTGATGGTTGACTTTTGACATCAAAAAATAAGGTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTG</genome_strand>
        <mrna_strand>CTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAATACCAATTGTTGAGAAAGATGCATTTGTGGCCCCAAGAGCCTCTATAATTGGTGATGTTCACATTGGGCGTAGGGCTTCTATTTGGTATGGGTGTGTTCTGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCCAAAATGTTACCATAG............................................................................................GTCATAACGCTGGGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGCGCTTGATGGAGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718024" ref_strand="+" ref_description="SGN-E718024 [FC03BG05]">
      <seq>atatacgtttgaatttggagaaatccggttgtggaatcggaagcaatagaggatgggttcggcgatgaaagcaatctacaccgttggattctggatccgtgagacaggccaagcccttgatcggttgggctgccgcctccagggaaactattacttccaagaacacctctcgaggcatagaactttgatgaacctgtttgacaaagtaccagttgttgagaaagatgcatttgtggccccaagtgcctctataattggtgatgttcacattggtcgtagtgcttctatttggtatgggtgtgttctgcgaggtgatgtgaacagtgtcagcattggagccggaactaatgtccaggacaattctctaatccatgtagctaaatcgaatatcagtggaaaggttttgcctacgataattggcaaaaatgttaccataggtcatagcgctgtgttacatggatgtactgttgaagacaaggcatttattggtatgggtgcaaccgtgcttgatggagctgttgtggagaaaaatgctatggtcgctgctggtgcccatgtaagacagaatacaaggattccattcggagaggtctggggaggaaatccagcgaggttcttgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="30621" stop="35841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30921" g_stop="31087" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32478" g_stop="32621" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="311" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34770" g_stop="34895" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="437" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34988" g_stop="35139" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="589" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35140" i_stop="35507" i_length="368">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35508" g_stop="35541" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="623" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E718024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30921" e_stop="31087"/>
          <exon e_start="32478" e_stop="32621"/>
          <exon e_start="34770" e_stop="34895"/>
          <exon e_start="34988" e_stop="35139"/>
          <exon e_start="35508" e_stop="35541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACCGTACGTCTCTTCTTTCTCCTCACTTCTTCACATCTATCACCTTTAAACATGTTATGTTTTCATATAACCCACAATTAGGGCTTTAGCTATTTGAACGATACACATTAGTTCAAGTCACAGAACGCTTTCAATTGTATAAATTCATTAGGCTTCGTTCTGCCATTTCTATTTAGCTGCATTTTCTGCACTCTGTTGTCTGAACATTAATTTTATTAGCTCAGATAGCACCGTGAAGGTGACATTTCAATGTTTGATGACAAGTAGTGAAGTTTTAGTTTTTTTTTGAGCTGCATAGAGCTATTAGCATCTGACTATCTCTTATTAGGGGATAATCCTTTCTTGATAAATGTCGACTTATGTAGAGTAATTTTTCTCTTGTCTATTTCCCTTTAAAATCTACGAATGGATACTTTCCCTTTTAGTTTCAGGAAAAAGAATGTTGTTATATTGATAAATAAAGTAAAACGACCGCTTCGTAAAGCTAGAAAGAATTAAGTGACATCAAATTTCATTGGCATTTTATATTTTCTCCATTCCAAACAGTCATTCAATGCTCTAACTTTGAAAGTGTAGTTTCAAAGTAATTTTCCTGATTATCGGTCTCAAGGAGATGGATTGGTGGTTGCGGCATAAAATAACAACCTAGAGATCTTAGGTATGAATTCCCCTTTGACGCTTAGTATGAACTTACTTCACAACCTTGGTGCACAAGGATTTCCTGTCACTTGTGGTTGTGGGCTGTAGTAGGGCGCTGTAGTTGAAGTTACAATTTTTTGCTTAAGAAAAATAAGGTCGATTACAAGTATTGTTGATTCAAGGTTATCAAGAGTGATGAGTGATCATGTAGGGTTGTTAATTTGAAGGCTGCTCATGATACTTAGTACTTATAGCATGGTATTACTATGACATATATGATCTATCTTACAATATGTCTAACAACAATCCGAGAGCTAGATTATTAATTCTGATCTCACCCAGTTCTCATTAACCATGCCCGCAACATTGTGACTAGCATAAGTAGCTCGGGTCAATTTTGATGAATTATTAGTCTATAAATATTTTCATCTGGGTGAGTCACTGAGGCTTGGGATCTTTGACAAGCATTCCACCGGTGTCGATTGTGATGATCTTAGTTACATTCATATTTATTCACAATCAGCCAATCTCACCATCTTAGGTTCTGTTCTCTATGTTTGGCTGTACTTCTAGAATTATTTCCTAGTCTTCTACTCATTCCTGTGTTCTGTTGTTATATGGTTTTCCTCTTTATGTCAAACCACATATTTTTTATTTCATGTCTAAACTTATTGGTTGTTGATGTGCTTTCTCCAATATGCAGCATGCCTTCTTGCTTTAACGTTTTTTATTCTCTACCTCTTTTTTATTCCAGTCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAGGTATGTTTTGCTTCTGCATATGATGGTAGTGTCAGTGCTGCTTTATTAAAAAAAGGTAGTGTCAGTGCTTAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTTAAGGTGTACCCGAACACCAGTTGTGAACAATAATATCGGGCTTTATAAAAGATACAAGACTCAATTAATTTGGACGAATCTGAACTGAATAAGTCTCTTGAATTGGAATATGAAAAAATTGGTTGAAAGAACCCAATAGAAATTGGCATTGAGGAATGAGGATTGGCACTGAGGATATCTGGACAAGTCTGCACTTGAGCAGAAGGTCTTTCAAAAACAACCTCTCTACCTCCACTAGGTAGGGGTAAGGTTTGCGTACCCTCCCCAGATCTCACTTGTGGTTTTACATTGGGTATGTTGTTGTTGTTATGTACTTAGTTTTAACAATTCAAAAAAATAATTTAAAGAAATGATGTAGGCCATTTATGCTTTTACGATCTAAATATGACTTAAGATTTTGGGGTTTGTGATAAACTTAATGTGTAGATCTCAACGAAACTCAAAGTTGTGGACTCATGGTACGATCATTCTTAATTTTGAGAACTTCTAGCTATCAAGAGTACTATGCTACTCTTTGACGAGTTAAGAATTGTATTGAAAACTTCATGTATAGCACAAGCGAAGACTGGCAGCACTTGATAAATATAGTTTTTTCCCTAATCCCTATATAACAATCATAATCTATATATGTTTTTTAAAAGTGACGGTGGTTTCATTACAACTTACATGTACATTCATGAGTGATGACAAAGGTGAGTTTCATTTTAGAAGAGAAATTAGTAAACTTTTCTGTTGCAGCGAAAACATGTTTTTCTCTAAAAATAAAATTTGTCAAATAATTCTCTTTTTTGAATATTGATCTTTGAGAGGATGTTCACGTATGAAAAGGTCAAATTTGTGAAATAAAAGATTGCTATAGGACTATTTATCAGACAATTATCTGCTTCCACCCAATGGTATTATTAGAAATATCAAATTAGATTGGACCTGATAACTTGGGCTCATTCAAAGTTGAAACTTATATTATTTGTTCAGGGACAAGACACAAAGCCCAAACATGCCTTCACTCAGGCAACTCTACTTTTGACTTACTCCACAAGCACTACTCCTTGAATCTCTTTATTGTAATGTTATCTATTGAAAGCTCAATCTACAACTTAGCCGACTGAAATTTCGAGCAAATTTTGGTTTATGCACACTCATGGCAGCCTTTAAATGAAATACTTTGGAAGTATGTGTCTTTCTTAATGCATATTGCCAACGATATTTGACTGAGTGAATATGCTCCCACACGTACAGTATTGAATAAAGTTTTGTTCCTTCTTCCTTGGTTATAAAACTTACATTGCGCCTCTTATAATATCACCTTGTCCTATCTTAGCTTCCTTAAGGGCAAGAATATGAGTTCTGCATTGGGCTCTAATTCTGTTAAGAAGTTTGGGCTTCAACCAAACTATGATTGCATAGTGTTTTTCCTTTTTGTGTGTGTGGAGTTCCCTGGATGTTTGTGCTCTTTAGTTTTCTTGTTCTTTCTCAACATGAAACTCCGTGCAGGTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAGGTGAGAAATTTCTGGCAATTTAGAGCATAATATACATCTGCCATTAATTTTTGAGTTGGCTTGATGGTTGACTTTTGACATCAAAAAATAAGGTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAGGTTTGTGGCAGACTTAAGTCACTCATTTTGCCATTATTGGGGTTTTTGCGCATGTGTACAAGTTCCTACATGGGTATTTACCAATTGGTGAAAAAAATATTATTTGTTCATACTGATGCTAGTTTCCATGTTAATCTTTAGTAAGTTGTTTAACCTCCCTATTATACACTTGTGAAACTGTGCATGTAACTGTTGACAAATGGACGAAGATTTGTTAGGATGTGGACTGATACAAGGAATTCCCAAAGAAAAGCCCGTCCCTTCCCTAGTTGTCTTGTATTCTAGCTTGTTATGAAATATGTAGTGAATTTTTTCGTTGCAAATTTCAACTTGCTCACATGTGTAATTATGACAACTAAAAAACACAGGTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGA</genome_strand>
        <mrna_strand>ATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAG............................................................................................GTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACAAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAG................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313942" ref_strand="+" ref_description="SGN-E313942 [cTOA-19-K1]">
      <seq>taaaacccttcttatagaagtatgcggctgttatactgattgattttgaaatatacattttttgtcgtggtaaaattttcctggagacatatgacgagtgtgagaaaagtattccttcttgtatcacaaaatatttgtcttttcttgaattatggtaatgggtagatatttcagagacaactgcattatggactcgtcaagctttatagttgaatcaacagtatgtcctatgccaaatctttatttataaaatgttgtttgttgatagttagctcagcatgtaaagattgcttattttatcgaaatgcagcattatgattttacttgtttttcagaactgataagtttgatatatatcatgcagtggtagttccctataagacaaagacagtagatattgctaatttcttgaaatacaacattataaggtcacatgccttgccgaacctggtagtcctgttgtttatgtcgtccagtagttcttatttgtaagacaagtagtaagactgagtgtacaatcttttctgcacatcataggtaattaagcctttcttctaatttagttacgatgtattaattcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="32391" stop="33575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32691" g_stop="33275" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E313942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32691" e_stop="33275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTT</genome_strand>
        <mrna_strand>TAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354210" ref_strand="+" ref_description="SGN-E354210 [cTOS-16-A12]">
      <seq>agagttggataagattgaatttgagaaggtgctgcgaaagaaactagcgcgcaaggatgaggagtatgactctatgttgggtgttagtgaaacacctccagagcttgtcctgcctgatagtagcctaccagacaaggcaccaaaggcctcctaagtgtggtttccatctggggtatcctgggattttgtgatgttattgggtaactcttttttgttttgggcggattaacgtcaaaatgcctgtgattagtttccaataattaaggccaagctgaaatatcaaagtttaatacgggtatgcagctgtagcatttttctacttatcatgtctggctgatcagtcttttgatgttcttgaaaaaacaaggttacactagagcttatatttgtctgtttaagcaatatgagaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0213A01-e4DBD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0213A01.2" temp_strand="+" temp_description="C02HBa0213A01.2  AC215424.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0213A01 sequenced_by:kribb upload_account_name:korea">
        <position start="35330" stop="36343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35630" g_stop="36043" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0213A01.2" gen_strand="+" ref_id="SGN-E354210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0213A01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35630" e_stop="36043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGGATAAGATTGAATTTGAGAAGGTGCTGCGAAAGAAACTAGCGCGCAAGGATGAGGAGTATGACTCTATGTTGGGTGTTAGTGAAACACCTCCAGAGCTTGTCCTGCCTGATAGTAGCCTACCAGACAAGGCACCAAAGGCCTCCTAAGTGTGGTTTCCATCTGGGGTATCCTGGGATTTTGTGATGTTATTGGGTAACTCTTTTTTGTTTTGGGCGGATTAACGTCAAAATGCCTGTGATTAGTTTCCAATAATTAAGGCCAAGCTGAAATATCAAAGTTTAATACGGGTATGCAGCTGTAGCATTTTTCTACTTATCATGTCTGGCTGATCAGTCTTTTGATGTTCTTGAAAAAACAAGGTTACACTAGAGCTTATATTTGTCTGTTTAAGCAATATGAGAAACTT</genome_strand>
        <mrna_strand>AGAGTTGGATAAGATTGAATTTGAGAAGGTGCTGCGAAAGAAACTAGCGCGCAAGGATGAGGAGTATGACTCTATGTTGGGTGTTAGTGAAACACCTCCAGAGCTTGTCCTGCCTGATAGTAGCCTACCAGACAAGGCACCAAAGGCCTCCTAAGTGTGGTTTCCATCTGGGGTATCCTGGGATTTTGTGATGTTATTGGGTAACTCTTTTTTGTTTTGGGCGGATTAACGTCAAAATGCCTGTGATTAGTTTCCAATAATTAAGGCCAAGCTGAAATATCAAAGTTTAATACGGGTATGCAGCTGTAGCATTTTTCTACTTATCATGTCTGGCTGATCAGTCTTTTGATGTTCTTGAAAAAACAAGGTTACACTAGAGCTTATATTTGTCTGTTTAAGCAATATGAGAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>58</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4242" PGL_stop="3844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4242" e_stop="3844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4242" e_stop="3844" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTGGCTGTAAGGGGTGCCCCTGTAAAATTGAATGGAGTAGGTGGTTTGTCTGGGAAATCTGGAGTGTACACACCCTTAATGTTGAAGTAATGAGACTGAAGAAGTGCAGTTTGTGGCATGATAAAGGAAATGTTGTTCAGAGATGCTGTAAGCCTAGTTCCATTTAGACAGGTGGGACAAGGATTAATTCCTAGGCCAACTGTAAACAAGAGGTGTCGATCAACATTTAGGGGAACGTTTGCTGGATATTTGGGAGTATTTAGGCTTTTGAGTTTAAAGTTATAGCTCAAAGCAAAGTCTGAGTCATTTTGTGCAGGCAAGGTAGGAAGTTTTGGAATCACGGTTTCTGGGATTCCCTTGTACTGGAAAATAGCAGTGGCAGTCTTGTTATCCA</gDNA_template>
            <first_frame> L  G  W  L  *  G  V  P  L  *  N  *  M  E  *  V  V  C  L  G  N  L  E  C  T  H  P  *  C  *  S  N  E  T  E  E  V  Q  F  V  A  *  *  R  K  C  C  S  E  M  L  *  A  *  F  H  L  D  R  W  D  K  D  *  F  L  G  Q  L  *  T  R  G  V  D  Q  H  L  G  E  R  L  L  D  I  W  E  Y  L  G  F  *  V  *  S  Y  S  S  K  Q  S  L  S  H  F  V  Q  A  R  *  E  V  L  E  S  R  F  L  G  F  P  C  T  G  K  *  Q  W  Q  S  C  Y  P </first_frame>
            <second_frame>  *  V  G  C  K  G  C  P  C  K  I  E  W  S  R  W  F  V  W  E  I  W  S  V  H  T  L  N  V  E  V  M  R  L  K  K  C  S  L  W  H  D  K  G  N  V  V  Q  R  C  C  K  P  S  S  I  *  T  G  G  T  R  I  N  S  *  A  N  C  K  Q  E  V  S  I  N  I  *  G  N  V  C  W  I  F  G  S  I  *  A  F  E  F  K  V  I  A  Q  S  K  V  *  V  I  L  C  R  Q  G  R  K  F  W  N  H  G  F  W  D  S  L  V  L  E  N  S  S  G  S  L  V  I   </second_frame>
            <third_frame>   R  L  A  V  R  G  A  P  V  K  L  N  G  V  G  G  L  S  G  K  S  G  V  Y  T  P  L  M  L  K  *  *  D  *  R  S  A  V  C  G  M  I  K  E  M  L  F  R  D  A  V  S  L  V  P  F  R  Q  V  G  Q  G  L  I  P  R  P  T  V  N  K  R  C  R  S  T  F  R  G  T  F  A  G  Y  L  G  V  F  R  L  L  S  L  K  L  *  L  K  A  K  S  E  S  F  C  A  G  K  V  G  S  F  G  I  T  V  S  G  I  P  L  Y  W  K  I  A  V  A  V  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0213A01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5584" PGL_stop="9992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5584" e_stop="5799"/>
            <exon e_start="6025" e_stop="6111"/>
            <exon e_start="6835" e_stop="6945"/>
            <exon e_start="7204" e_stop="7255"/>
            <exon e_start="7547" e_stop="7684"/>
            <exon e_start="8184" e_stop="8282"/>
            <exon e_start="8614" e_stop="8711"/>
            <exon e_start="9098" e_stop="9205"/>
            <exon e_start="9314" e_stop="9395"/>
            <exon e_start="9634" e_stop="9992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.552" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5584" e_stop="5799" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5800" i_stop="6024" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6025" e_stop="6111" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6835" e_stop="6945" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.552" acc_prob="0.963">
            <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7204" e_stop="7255" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7547" e_stop="7684" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8184" e_stop="8282" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.944">
            <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8614" e_stop="8711" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.954" acc_prob="0.918">
            <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9098" e_stop="9205" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.909" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9314" e_stop="9395" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9634" e_stop="9992" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5584" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5650" stop="5799"/>
              <exon start="6025" stop="6111"/>
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              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5650" stop="5799"/>
              <exon start="6025" stop="6111"/>
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              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5650" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5654" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5654" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281532" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5656" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5657" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5657" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5658" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
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              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5659" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5659" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5660" stop="5799"/>
              <exon start="6025" stop="6111"/>
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              <exon start="7204" stop="7255"/>
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              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5661" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5661" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5662" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5663" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5710" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5710" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5720" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5722" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5729" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5767" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5767" stop="5799"/>
              <exon start="6025" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6085" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7655" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7655" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7655" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8683" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAACTTATTGTAGAGGCACAATATCCAGTTTAAGTAGTTCAGTGGACAACAAGGACTGCACAGAGCAATAAAAAGAGAACTTCAGTTGAAAGCAAAAAAGACTTACTTTTTGCAAATCCTTAGTAATTTTGCCATCAAATAGAAGATGGCAGCATTGTCTATGACCTGGTCTTGCTCTCCCTTAACCTCCTCAAAATTTCGGCGAGTCAATCG : ATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG : TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG : TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG : CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG : ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC : GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG : AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA : TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG : ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAAGTAC</gDNA_template>
            <first_frame> F  E  L  I  V  E  A  Q  Y  P  V  *  V  V  Q  W  T  T  R  T  A  Q  S  N  K  K  R  T  S  V  E  S  K  K  D  L  L  F  A  N  P  *  *  F  C  H  Q  I  E  D  G  S  I  V  Y  D  L  V  L  L  S  L  N  L  L  K  I  S  A  S  Q  S  :  I  F  R  N  G  I  C  K  C  E  I  Y  *  R  V  G  E  F  T  Q  G  R  F  D  F  S  S  W  K  :  *  G  *  A  I  S  I  W  S  L  C  H  I  L  E  S  R  Q  *  R  S  T  F  C  S  T  R  C  C  I  Q  W  S  E  T  N  Q  :  W  R  N  T  T  L  F  P  T  I  W  T  W  P  N  P  A   : A  R  I  W  K  E  H  E  L  V  P  C  *  L  *  K  C  E  G  E  T  C  C  Y  C  G  A  K  G  W  A  L  *  P  C  N  V  G  L  *  F  P  C  S  L  Q   : D  H  S  *  *  E  D  P  V  N  R  T  H  S  *  K  Y  *  Q  Q  A  I  F  I  H  Y  C  T  A  Y  L  L  Q   : R  F  C  N  R  C  I  S  *  W  F  K  R  L  Q  N  S  K  Q  G  S  *  S  H  K  P  C  R  G  K  R  G  K  :  R  C  G  D  I  S  W  I  C  G  L  C  L  S  *  C  T  *  *  V  T  P  R  *  W  L  G  *  *  D  I  Y  Q  K  H  Q  :  L  V  *  C  C  S  M  E  P  S  F  D  H  G  T  K  L  *  R  F  C  L  C  *  K  C  Q   : D  W  N  S  A  A  *  T  R  A  I  L  D  G  C  T  T  S  N  C  C  L  K  I  P  P  G  R  E  I  N  F  L  E  K  P  S  P  A  F  Q  F  K  R  L  T  *  E  N  D  *  K  W  L  Y  K  I  K  N  N  V  V  S  N  M  T  C  I  S  *  Q  L  R  V  L  S  D  I  Y  I  F  S  P  I  N  L  L  C  I  C  K  I  L  I  V  Q  G  K  R  Y  E  G  A  K  C  I  S  *  I  I  Q  D  L  R  W  N  R  K  K  Y </first_frame>
            <second_frame>  S  N  L  L  *  R  H  N  I  Q  F  K  *  F  S  G  Q  Q  G  L  H  R  A  I  K  R  E  L  Q  L  K  A  K  K  T  Y  F  L  Q  I  L  S  N  F  A  I  K  *  K  M  A  A  L  S  M  T  W  S  C  S  P  L  T  S  S  K  F  R  R  V  N  R :   Y  S  G  M  A  F  A  S  V  K  S  T  E  G  L  G  N  L  P  K  V  V  L  T  S  P  H  G  S :   E  A  E  L  Y  L  F  G  A  C  V  T  S  W  K  V  D  S  K  D  L  L  F  V  R  P  D  A  V  F  N  G  Q  K  P  I  S :   G  G  I  P  H  C  F  P  Q  F  G  P  G  P  I  Q  Q  :  H  G  F  G  R  N  M  N  W  S  L  V  S  S  E  S  V  K  E  K  P  V  V  T  V  E  L  R  D  G  P  Y  S  R  A  M  W  D  Y  S  F  H  A  L  Y  K  :  I  T  L  D  K  K  T  L  S  T  E  L  T  V  K  N  T  D  N  K  P  F  S  F  T  T  A  L  H  T  Y  F  S  :  A  S  V  T  G  A  S  V  N  G  L  K  G  C  K  T  L  N  K  V  P  D  P  T  N  P  V  E  G  K  E  E  R :   D  V  V  T  F  P  G  F  V  D  C  V  Y  L  D  A  P  N  E  L  H  L  D  N  G  L  G  D  K  I  S  I  K  N  T  N :   W  S  D  A  V  L  W  N  P  H  L  T  M  E  Q  S  Y  K  D  F  V  C  V  E  N  A  K  :  I  G  T  V  Q  L  E  P  E  Q  S  W  T  A  V  Q  H  L  T  V  A  *  R  Y  L  P  E  E  K  S  T  F  W  R  N  P  P  L  L  F  N  L  K  D  S  L  E  K  M  I  E  N  G  Y  T  K  *  R  I  M  L  Y  L  T  *  P  A  F  H  S  S  *  E  C  *  V  I  F  T  S  S  L  P  S  I  F  S  V  F  A  K  S  *  L  Y  K  V  N  D  M  K  V  Q  S  A  *  A  E  L  S  K  I  Y  D  G  T  G  K  S   </second_frame>
            <third_frame>   R  T  Y  C  R  G  T  I  S  S  L  S  S  S  V  D  N  K  D  C  T  E  Q  *  K  E  N  F  S  *  K  Q  K  R  L  T  F  C  K  S  L  V  I  L  P  S  N  R  R  W  Q  H  C  L  *  P  G  L  A  L  P  *  P  P  Q  N  F  G  E  S  I   : D  I  Q  E  W  H  L  Q  V  *  N  L  L  K  G  W  G  I  Y  P  R  S  F  *  L  L  L  M  E   : V  R  L  S  Y  I  Y  L  E  L  V  S  H  L  G  K  *  T  V  K  I  Y  F  L  F  D  Q  M  L  Y  S  M  V  R  N  Q  S   : V  E  E  Y  H  I  V  S  H  N  L  D  L  A  Q  S  S  S :   T  D  L  E  G  T  *  I  G  P  L  L  A  L  K  V  *  R  R  N  L  L  L  L  W  S  *  G  M  G  L  I  A  V  Q  C  G  T  I  V  S  M  L  F  T  R :   S  L  L  I  R  R  P  C  Q  Q  N  S  Q  L  K  I  L  T  T  S  H  F  H  S  L  L  H  C  I  L  T  S  A :   L  L  *  Q  V  H  Q  L  M  V  *  K  V  A  K  L  *  T  R  F  L  I  P  Q  T  L  S  R  E  K  R  K   : E  M  W  *  H  F  L  D  L  W  T  V  F  I  L  M  H  L  M  S  Y  T  *  I  M  A  W  V  I  R  Y  L  S  K  T  P   : I  G  L  M  L  F  Y  G  T  L  I  *  P  W  N  K  A  I  K  I  L  F  V  L  K  M  P  R :   L  E  Q  C  S  L  N  Q  S  N  L  G  R  L  Y  N  I  *  L  L  L  K  D  T  S  R  K  R  N  Q  L  F  G  E  T  L  P  C  F  S  I  *  K  T  H  L  R  K  *  L  K  M  A  I  Q  N  K  E  *  C  C  I  *  H  D  L  H  F  I  A  V  K  S  V  K  *  Y  L  H  L  L  S  H  Q  S  S  L  Y  L  Q  N  P  N  C  T  R  *  T  I  *  R  C  K  V  H  K  L  N  Y  P  R  F  T  M  E  Q  E  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5729" stop="5799"/>
                    <exon start="6025" stop="6111"/>
                    <exon start="6835" stop="6945"/>
                    <exon start="7204" stop="7255"/>
                    <exon start="7547" stop="7684"/>
                    <exon start="8184" stop="8282"/>
                    <exon start="8614" stop="8711"/>
                    <exon start="9098" stop="9205"/>
                    <exon start="9314" stop="9395"/>
                    <exon start="9634" stop="9699"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAALSMTWSCSPLTSSKFRRVNRYSGMAFASVKSTEGLGNLPKVVLTSPHGSEAELYLFGACVTSWKVDSKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGPIQQHGFGRNMNWSLVSSESVKEKPVVTVELRDGPYSRAMWDYSFHALYKITLDKKTLSTELTVKNTDNKPFSFTTALHTYFSASVTGASVNGLKGCKTLNKVPDPTNPVEGKEERDVVTFPGFVDCVYLDAPNELHLDNGLGDKISIKNTNWSDAVLWNPHLTMEQSYKDFVCVENAKIGTVQLEPEQSWTAVQHLTVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6022" e_stop="6111"/>
            <exon e_start="6835" e_stop="6945"/>
            <exon e_start="7204" e_stop="7255"/>
            <exon e_start="7547" e_stop="7684"/>
            <exon e_start="8184" e_stop="8282"/>
            <exon e_start="8614" e_stop="8711"/>
            <exon e_start="9098" e_stop="9205"/>
            <exon e_start="9314" e_stop="9395"/>
            <exon e_start="9634" e_stop="9992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="0.989"/>
          <exon-intron don_prob="0.552" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="6022" e_stop="6111" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="6112" i_stop="6834" i_length="723"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6835" e_stop="6945" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.552" acc_prob="0.963">
            <gDNA_intron_boundary i_start="6946" i_stop="7203" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7204" e_stop="7255" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="7256" i_stop="7546" i_length="291"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7547" e_stop="7684" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7685" i_stop="8183" i_length="499"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8184" e_stop="8282" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.944">
            <gDNA_intron_boundary i_start="8283" i_stop="8613" i_length="331"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8614" e_stop="8711" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.954" acc_prob="0.918">
            <gDNA_intron_boundary i_start="8712" i_stop="9097" i_length="386"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9098" e_stop="9205" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.909" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9206" i_stop="9313" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9314" e_stop="9395" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9396" i_stop="9633" i_length="238"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9634" e_stop="9992" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6022" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6085" stop="6111"/>
              <exon start="6835" stop="6945"/>
              <exon start="7204" stop="7255"/>
              <exon start="7547" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7655" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7655" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7655" stop="7684"/>
              <exon start="8184" stop="8282"/>
              <exon start="8614" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8683" stop="8711"/>
              <exon start="9098" stop="9205"/>
              <exon start="9314" stop="9395"/>
              <exon start="9634" stop="9861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGATATTCAGGAATGGCATTTGCAAGTGTGAAATCTACTGAAGGGTTGGGGAATTTACCCAAGGTCGTTTTGACTTCTCCTCATGGAAG : TGAGGCTGAGCTATATCTATTTGGAGCTTGTGTCACATCTTGGAAAGTAGACAGTAAAGATCTACTTTTTGTTCGACCAGATGCTGTATTCAATGGTCAGAAACCAATCAG : TGGAGGAATACCACATTGTTTCCCACAATTTGGACCTGGCCCAATCCAGCAG : CACGGATTTGGAAGGAACATGAATTGGTCCCTTGTTAGCTCTGAAAGTGTGAAGGAGAAACCTGTTGTTACTGTGGAGCTAAGGGATGGGCCTTATAGCCGTGCAATGTGGGACTATAGTTTCCATGCTCTTTACAAG : ATCACTCTTGATAAGAAGACCCTGTCAACAGAACTCACAGTTAAAAATACTGACAACAAGCCATTTTCATTCACTACTGCACTGCATACTTACTTCAGC : GCTTCTGTAACAGGTGCATCAGTTAATGGTTTAAAAGGTTGCAAAACTCTAAACAAGGTTCCTGATCCCACAAACCCTGTCGAGGGAAAAGAGGAAAG : AGATGTGGTGACATTTCCTGGATTTGTGGACTGTGTTTATCTTGATGCACCTAATGAGTTACACCTAGATAATGGCTTGGGTGATAAGATATCTATCAAAAACACCAA : TTGGTCTGATGCTGTTCTATGGAACCCTCATTTGACCATGGAACAAAGCTATAAAGATTTTGTTTGTGTTGAAAATGCCAAG : ATTGGAACAGTGCAGCTTGAACCAGAGCAATCTTGGACGGCTGTACAACATCTAACTGTTGCTTAAAGATACCTCCCGGAAGAGAAATCAACTTTTTGGAGAAACCCTCCCCTGCTTTTCAATTTAAAAGACTCACTTGAGAAAATGATTGAAAATGGCTATACAAAATAAAGAATAATGTTGTATCTAACATGACCTGCATTTCATAGCAGTTAAGAGTGTTAAGTGATATTTACATCTTCTCTCCCATCAATCTTCTCTGTATTTGCAAAATCCTAATTGTACAAGGTAAACGATATGAAGGTGCAAAGTGCATAAGCTGAATTATCCAAGATTTACGATGGAACAGGAAAAAGTAC</gDNA_template>
            <first_frame> Q  I  F  R  N  G  I  C  K  C  E  I  Y  *  R  V  G  E  F  T  Q  G  R  F  D  F  S  S  W  K  :  *  G  *  A  I  S  I  W  S  L  C  H  I  L  E  S  R  Q  *  R  S  T  F  C  S  T  R  C  C  I  Q  W  S  E  T  N  Q  :  W  R  N  T  T  L  F  P  T  I  W  T  W  P  N  P  A   : A  R  I  W  K  E  H  E  L  V  P  C  *  L  *  K  C  E  G  E  T  C  C  Y  C  G  A  K  G  W  A  L  *  P  C  N  V  G  L  *  F  P  C  S  L  Q   : D  H  S  *  *  E  D  P  V  N  R  T  H  S  *  K  Y  *  Q  Q  A  I  F  I  H  Y  C  T  A  Y  L  L  Q   : R  F  C  N  R  C  I  S  *  W  F  K  R  L  Q  N  S  K  Q  G  S  *  S  H  K  P  C  R  G  K  R  G  K  :  R  C  G  D  I  S  W  I  C  G  L  C  L  S  *  C  T  *  *  V  T  P  R  *  W  L  G  *  *  D  I  Y  Q  K  H  Q  :  L  V  *  C  C  S  M  E  P  S  F  D  H  G  T  K  L  *  R  F  C  L  C  *  K  C  Q   : D  W  N  S  A  A  *  T  R  A  I  L  D  G  C  T  T  S  N  C  C  L  K  I  P  P  G  R  E  I  N  F  L  E  K  P  S  P  A  F  Q  F  K  R  L  T  *  E  N  D  *  K  W  L  Y  K  I  K  N  N  V  V  S  N  M  T  C  I  S  *  Q  L  R  V  L  S  D  I  Y  I  F  S  P  I  N  L  L  C  I  C  K  I  L  I  V  Q  G  K  R  Y  E  G  A  K  C  I  S  *  I  I  Q  D  L  R  W  N  R  K  K  Y </first_frame>
            <second_frame>  R  Y  S  G  M  A  F  A  S  V  K  S  T  E  G  L  G  N  L  P  K  V  V  L  T  S  P  H  G  S :   E  A  E  L  Y  L  F  G  A  C  V  T  S  W  K  V  D  S  K  D  L  L  F  V  R  P  D  A  V  F  N  G  Q  K  P  I  S :   G  G  I  P  H  C  F  P  Q  F  G  P  G  P  I  Q  Q  :  H  G  F  G  R  N  M  N  W  S  L  V  S  S  E  S  V  K  E  K  P  V  V  T  V  E  L  R  D  G  P  Y  S  R  A  M  W  D  Y  S  F  H  A  L  Y  K  :  I  T  L  D  K  K  T  L  S  T  E  L  T  V  K  N  T  D  N  K  P  F  S  F  T  T  A  L  H  T  Y  F  S  :  A  S  V  T  G  A  S  V  N  G  L  K  G  C  K  T  L  N  K  V  P  D  P  T  N  P  V  E  G  K  E  E  R :   D  V  V  T  F  P  G  F  V  D  C  V  Y  L  D  A  P  N  E  L  H  L  D  N  G  L  G  D  K  I  S  I  K  N  T  N :   W  S  D  A  V  L  W  N  P  H  L  T  M  E  Q  S  Y  K  D  F  V  C  V  E  N  A  K  :  I  G  T  V  Q  L  E  P  E  Q  S  W  T  A  V  Q  H  L  T  V  A  *  R  Y  L  P  E  E  K  S  T  F  W  R  N  P  P  L  L  F  N  L  K  D  S  L  E  K  M  I  E  N  G  Y  T  K  *  R  I  M  L  Y  L  T  *  P  A  F  H  S  S  *  E  C  *  V  I  F  T  S  S  L  P  S  I  F  S  V  F  A  K  S  *  L  Y  K  V  N  D  M  K  V  Q  S  A  *  A  E  L  S  K  I  Y  D  G  T  G  K  S   </second_frame>
            <third_frame>   D  I  Q  E  W  H  L  Q  V  *  N  L  L  K  G  W  G  I  Y  P  R  S  F  *  L  L  L  M  E   : V  R  L  S  Y  I  Y  L  E  L  V  S  H  L  G  K  *  T  V  K  I  Y  F  L  F  D  Q  M  L  Y  S  M  V  R  N  Q  S   : V  E  E  Y  H  I  V  S  H  N  L  D  L  A  Q  S  S  S :   T  D  L  E  G  T  *  I  G  P  L  L  A  L  K  V  *  R  R  N  L  L  L  L  W  S  *  G  M  G  L  I  A  V  Q  C  G  T  I  V  S  M  L  F  T  R :   S  L  L  I  R  R  P  C  Q  Q  N  S  Q  L  K  I  L  T  T  S  H  F  H  S  L  L  H  C  I  L  T  S  A :   L  L  *  Q  V  H  Q  L  M  V  *  K  V  A  K  L  *  T  R  F  L  I  P  Q  T  L  S  R  E  K  R  K   : E  M  W  *  H  F  L  D  L  W  T  V  F  I  L  M  H  L  M  S  Y  T  *  I  M  A  W  V  I  R  Y  L  S  K  T  P   : I  G  L  M  L  F  Y  G  T  L  I  *  P  W  N  K  A  I  K  I  L  F  V  L  K  M  P  R :   L  E  Q  C  S  L  N  Q  S  N  L  G  R  L  Y  N  I  *  L  L  L  K  D  T  S  R  K  R  N  Q  L  F  G  E  T  L  P  C  F  S  I  *  K  T  H  L  R  K  *  L  K  M  A  I  Q  N  K  E  *  C  C  I  *  H  D  L  H  F  I  A  V  K  S  V  K  *  Y  L  H  L  L  S  H  Q  S  S  L  Y  L  Q  N  P  N  C  T  R  *  T  I  *  R  C  K  V  H  K  L  N  Y  P  R  F  T  M  E  Q  E  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6023" stop="6111"/>
                    <exon start="6835" stop="6945"/>
                    <exon start="7204" stop="7255"/>
                    <exon start="7547" stop="7684"/>
                    <exon start="8184" stop="8282"/>
                    <exon start="8614" stop="8711"/>
                    <exon start="9098" stop="9205"/>
                    <exon start="9314" stop="9395"/>
                    <exon start="9634" stop="9699"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSGMAFASVKSTEGLGNLPKVVLTSPHGSEAELYLFGACVTSWKVDSKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGPIQQHGFGRNMNWSLVSSESVKEKPVVTVELRDGPYSRAMWDYSFHALYKITLDKKTLSTELTVKNTDNKPFSFTTALHTYFSASVTGASVNGLKGCKTLNKVPDPTNPVEGKEERDVVTFPGFVDCVYLDAPNELHLDNGLGDKISIKNTNWSDAVLWNPHLTMEQSYKDFVCVENAKIGTVQLEPEQSWTAVQHLTVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15199" PGL_stop="12724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15180" e_stop="14541"/>
            <exon e_start="14445" e_stop="14343"/>
            <exon e_start="13647" e_stop="13439"/>
            <exon e_start="13277" e_stop="13248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15180" e_stop="14541" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14540" i_stop="14446" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14445" e_stop="14343" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13647" e_stop="13439" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="13277" e_stop="13248" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15180" stop="14629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="14767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15176" stop="14707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14887" stop="14541"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14799" stop="14541"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13439"/>
              <exon start="13277" stop="13248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14798" stop="14541"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGC : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGT</gDNA_template>
            <first_frame> L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G  G  I  S  S  C  I  T  L  R  V  F  T  L  *  H  L  L  L  L  *  K  M  F  F  L  S  I  L  A  R  N  W  K  R  G  L  L  Y  W  Q  M  S  L  L  C  G  C  R  N  P  I  T  M  V  V  N  G  V  *  F  F  T  H  S  V  I  P  V  G  L   : L  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  </first_frame>
            <second_frame>  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  V  Y  R  V  V  *  L  *  G  Y  S  R  S  N  I  C  C  F  C  E  R  C  S  F  F  R  S  W  Q  E  I  G  R  E  D  C  C  I  G  K  *  A  C  F  V  V  V  G  I  R  *  R  W  S  *  T  V  F  D  F  S  H  I  Q  *  Y  R  L  A  C  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C </second_frame>
            <third_frame>   P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  R  Y  I  E  L  Y  N  S  K  G  I  H  A  L  T  F  V  A  S  V  K  D  V  L  S  F  D  L  G  K  K  L  E  E  R  I  A  V  L  A  N  E  L  A  L  W  L  S  E  S  D  N  D  G  R  E  R  C  L  I  F  H  T  F  S  N  T  G  W  L  A :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15178" stop="14541"/>
                    <exon start="14445" stop="14343"/>
                    <exon start="13647" stop="13439"/>
                    <exon start="13277" stop="13250"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRRYIELYNSKGIHALTFVASVKDVLSFDLGKKLEERIAVLANELALWLSESDNDGRERCLIFHTFSNTGWLAYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15181" e_stop="14537"/>
            <exon e_start="14445" e_stop="14343"/>
            <exon e_start="13647" e_stop="13490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15181" e_stop="14537" e_length="645"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14536" i_stop="14446" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14445" e_stop="14343" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="13647" e_stop="13490" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15181" stop="14537"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15180" stop="14629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="14767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15176" stop="14707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15167" stop="14537"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAGGTATATCGAGTTGTATAACTCTAAGGGTATTCACGCTCTAACATTTGTTGCTTCTGTGAAAGATGTTCTTTCTTTCGATCTTGGCAAGAAATTGGAAGAGAGGATTGCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGATTTTTCACACATTCAGTAATACCGGTTGGCTTGCGTAG : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGC</gDNA_template>
            <first_frame> P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  R  Y  I  E  L  Y  N  S  K  G  I  H  A  L  T  F  V  A  S  V  K  D  V  L  S  F  D  L  G  K  K  L  E  E  R  I  A  V  L  A  N  E  L  A  L  W  L  S  E  S  D  N  D  G  R  E  R  C  L  I  F  H  T  F  S  N  T  G  W  L  A  *  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C </first_frame>
            <second_frame>  L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G  G  I  S  S  C  I  T  L  R  V  F  T  L  *  H  L  L  L  L  *  K  M  F  F  L  S  I  L  A  R  N  W  K  R  G  L  L  Y  W  Q  M  S  L  L  C  G  C  R  N  P  I  T  M  V  V  N  G  V  *  F  F  T  H  S  V  I  P  V  G  L  R  S :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F   </second_frame>
            <third_frame>   S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  V  Y  R  V  V  *  L  *  G  Y  S  R  S  N  I  C  C  F  C  E  R  C  S  F  F  R  S  W  Q  E  I  G  R  E  D  C  C  I  G  K  *  A  C  F  V  V  V  G  I  R  *  R  W  S  *  T  V  F  D  F  S  H  I  Q  *  Y  R  L  A  C  V   : V  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15181" stop="14537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRRYIELYNSKGIHALTFVASVKDVLSFDLGKKLEERIAVLANELALWLSESDNDGRERCLIFHTFSNTGWLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15199" e_stop="14751"/>
            <exon e_start="14445" e_stop="14343"/>
            <exon e_start="13647" e_stop="13439"/>
            <exon e_start="13277" e_stop="12724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.711" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="15199" e_stop="14751" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.711" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14750" i_stop="14446" i_length="305"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14445" e_stop="14343" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14342" i_stop="13648" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13647" e_stop="13439" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13438" i_stop="13278" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="13277" e_stop="12724" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15199" stop="14751"/>
              <exon start="14445" stop="14343"/>
              <exon start="13647" stop="13439"/>
              <exon start="13277" stop="13208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15177" stop="14767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13243" stop="12724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACAAAGTCGCAAATCCTCCTCATTCAATGGAAGCCTCTGTCAGACTACTCACTTGTTCTAATCGCCACCATGTCTCCCCTTCTCTCTTCCTCAAACTCAATCACAAGCCCTTTCCTTTATCACCATCTTCCTTTCGAACCCCTTCACTTTCTTCTCCCCCAAAGAATCGCCCCCGCATTTTCTTATCACATCGCAATCCCTCCTCCCCACTTTCTTCTCCATTTGGGTTTTCGAAAAACCCTTTCCCGTCGAAATTCTTGAATCCCATCTTATCCAGCGATCGTTTTGCTCGAATAGTATCTGGTACCCAAGATAAATTATTCGATTGGCATTTTGCTGCTGGCAGTGAAAAGGGTAATGAAATTGGGGCAATACCCAAAGAAGGCCCAATTGTGACGGTTGTGATGTTGGGTTGGCTCGGGTCAAAGCCGAAACATTTGAGGAG : TTATGGTGCTATTCTTGAGAATCTGAAAAATAGACAGGATTTGTTGGAAAAGATCAAGGGTTGTGTCGTAGATTCCGGTGGTGATCCAGATATAAGCCCTAAG : GTCTGGGCAGCTGGATTTACTGCAGCCATGCTGAAGAAGTGTAGCTCCTTTGCATATTCTTCAGTAGAAGCTGGAGAAGGAAATGAAGTGGAACGTCCATTAACCTTGGGAAACATTCAAACTAAGGGAGCCATGATGATGGAAACCGTTCTTTTTGCAACACTTGAGAAGCTTTTCTCGTTGCTTCTTAATTTGCCTGATGTTAATGA : GCGGTTGACGAAGATAATTACTGTCCTTGTCAAGAACCAGCCTTCCTGTCTTCAGCTATATCTTTACAGTACAGCTGACAAGGTCATTCCAATTCAGTCAGTTGAATCTTTTATTCAAGAGCAGAGGAAAATTGGGAGAGAGGTTCACTCTTTCAACTTTGGCTCTTCTCCTCATGTAGATCATTACCGAACTTTTCCAGACAAATATGTATCTGTATTACAGAAATTTCTCCAAGAATGTACACTCATACCCAAAGGGAAAAGACGTTAATAGATCAAAGGAGTTGAGGGTGATTAACCATTCCTCGTAGTCTTTATTGAATTGCTTTAATTGGGGCAATGTATCTTAAGAGTTGCAAACTAGTCTTGTGTTAAGTGCTGTCAATTGCTACTCAGGCAGTAACATTCTGCAATGAGGAGGCTTTGCTGCAAGTGGACTGGTAGTAGTTGCAAATTGGTCCAAAGTAGACTTACATCTCCGGCCAATGTTTTCTAATAACATGAGGAAGTCTTTATTTGTGTTTTATTTAATTGAGCATGTTGTTTCGTCCTTT</gDNA_template>
            <first_frame> K  N  K  V  A  N  P  P  H  S  M  E  A  S  V  R  L  L  T  C  S  N  R  H  H  V  S  P  S  L  F  L  K  L  N  H  K  P  F  P  L  S  P  S  S  F  R  T  P  S  L  S  S  P  P  K  N  R  P  R  I  F  L  S  H  R  N  P  S  S  P  L  S  S  P  F  G  F  S  K  N  P  F  P  S  K  F  L  N  P  I  L  S  S  D  R  F  A  R  I  V  S  G  T  Q  D  K  L  F  D  W  H  F  A  A  G  S  E  K  G  N  E  I  G  A  I  P  K  E  G  P  I  V  T  V  V  M  L  G  W  L  G  S  K  P  K  H  L  R  S :   Y  G  A  I  L  E  N  L  K  N  R  Q  D  L  L  E  K  I  K  G  C  V  V  D  S  G  G  D  P  D  I  S  P  K  :  V  W  A  A  G  F  T  A  A  M  L  K  K  C  S  S  F  A  Y  S  S  V  E  A  G  E  G  N  E  V  E  R  P  L  T  L  G  N  I  Q  T  K  G  A  M  M  M  E  T  V  L  F  A  T  L  E  K  L  F  S  L  L  L  N  L  P  D  V  N  E :   R  L  T  K  I  I  T  V  L  V  K  N  Q  P  S  C  L  Q  L  Y  L  Y  S  T  A  D  K  V  I  P  I  Q  S  V  E  S  F  I  Q  E  Q  R  K  I  G  R  E  V  H  S  F  N  F  G  S  S  P  H  V  D  H  Y  R  T  F  P  D  K  Y  V  S  V  L  Q  K  F  L  Q  E  C  T  L  I  P  K  G  K  R  R  *  *  I  K  G  V  E  G  D  *  P  F  L  V  V  F  I  E  L  L  *  L  G  Q  C  I  L  R  V  A  N  *  S  C  V  K  C  C  Q  L  L  L  R  Q  *  H  S  A  M  R  R  L  C  C  K  W  T  G  S  S  C  K  L  V  Q  S  R  L  T  S  P  A  N  V  F  *  *  H  E  E  V  F  I  C  V  L  F  N  *  A  C  C  F  V  L  </first_frame>
            <second_frame>  K  T  K  S  Q  I  L  L  I  Q  W  K  P  L  S  D  Y  S  L  V  L  I  A  T  M  S  P  L  L  S  S  S  N  S  I  T  S  P  F  L  Y  H  H  L  P  F  E  P  L  H  F  L  L  P  Q  R  I  A  P  A  F  S  Y  H  I  A  I  P  P  P  H  F  L  L  H  L  G  F  R  K  T  L  S  R  R  N  S  *  I  P  S  Y  P  A  I  V  L  L  E  *  Y  L  V  P  K  I  N  Y  S  I  G  I  L  L  L  A  V  K  R  V  M  K  L  G  Q  Y  P  K  K  A  Q  L  *  R  L  *  C  W  V  G  S  G  Q  S  R  N  I  *  G   : V  M  V  L  F  L  R  I  *  K  I  D  R  I  C  W  K  R  S  R  V  V  S  *  I  P  V  V  I  Q  I  *  A  L  R :   S  G  Q  L  D  L  L  Q  P  C  *  R  S  V  A  P  L  H  I  L  Q  *  K  L  E  K  E  M  K  W  N  V  H  *  P  W  E  T  F  K  L  R  E  P  *  *  W  K  P  F  F  L  Q  H  L  R  S  F  S  R  C  F  L  I  C  L  M  L  M   : S  G  *  R  R  *  L  L  S  L  S  R  T  S  L  P  V  F  S  Y  I  F  T  V  Q  L  T  R  S  F  Q  F  S  Q  L  N  L  L  F  K  S  R  G  K  L  G  E  R  F  T  L  S  T  L  A  L  L  L  M  *  I  I  T  E  L  F  Q  T  N  M  Y  L  Y  Y  R  N  F  S  K  N  V  H  S  Y  P  K  G  K  D  V  N  R  S  K  E  L  R  V  I  N  H  S  S  *  S  L  L  N  C  F  N  W  G  N  V  S  *  E  L  Q  T  S  L  V  L  S  A  V  N  C  Y  S  G  S  N  I  L  Q  *  G  G  F  A  A  S  G  L  V  V  V  A  N  W  S  K  V  D  L  H  L  R  P  M  F  S  N  N  M  R  K  S  L  F  V  F  Y  L  I  E  H  V  V  S  S  F </second_frame>
            <third_frame>   K  Q  S  R  K  S  S  S  F  N  G  S  L  C  Q  T  T  H  L  F  *  S  P  P  C  L  P  F  S  L  P  Q  T  Q  S  Q  A  L  S  F  I  T  I  F  L  S  N  P  F  T  F  F  S  P  K  E  S  P  P  H  F  L  I  T  S  Q  S  L  L  P  T  F  F  S  I  W  V  F  E  K  P  F  P  V  E  I  L  E  S  H  L  I  Q  R  S  F  C  S  N  S  I  W  Y  P  R  *  I  I  R  L  A  F  C  C  W  Q  *  K  G  *  *  N  W  G  N  T  Q  R  R  P  N  C  D  G  C  D  V  G  L  A  R  V  K  A  E  T  F  E  E  :  L  W  C  Y  S  *  E  S  E  K  *  T  G  F  V  G  K  D  Q  G  L  C  R  R  F  R  W  *  S  R  Y  K  P  *   : G  L  G  S  W  I  Y  C  S  H  A  E  E  V  *  L  L  C  I  F  F  S  R  S  W  R  R  K  *  S  G  T  S  I  N  L  G  K  H  S  N  *  G  S  H  D  D  G  N  R  S  F  C  N  T  *  E  A  F  L  V  A  S  *  F  A  *  C  *  *  :  A  V  D  E  D  N  Y  C  P  C  Q  E  P  A  F  L  S  S  A  I  S  L  Q  Y  S  *  Q  G  H  S  N  S  V  S  *  I  F  Y  S  R  A  E  E  N  W  E  R  G  S  L  F  Q  L  W  L  F  S  S  C  R  S  L  P  N  F  S  R  Q  I  C  I  C  I  T  E  I  S  P  R  M  Y  T  H  T  Q  R  E  K  T  L  I  D  Q  R  S  *  G  *  L  T  I  P  R  S  L  Y  *  I  A  L  I  G  A  M  Y  L  K  S  C  K  L  V  L  C  *  V  L  S  I  A  T  Q  A  V  T  F  C  N  E  E  A  L  L  Q  V  D  W  *  *  L  Q  I  G  P  K  *  T  Y  I  S  G  Q  C  F  L  I  T  *  G  S  L  Y  L  C  F  I  *  L  S  M  L  F  R  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15199" stop="14751"/>
                    <exon start="14445" stop="14343"/>
                    <exon start="13647" stop="13439"/>
                    <exon start="13277" stop="13007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKVANPPHSMEASVRLLTCSNRHHVSPSLFLKLNHKPFPLSPSSFRTPSLSSPPKNRPRIFLSHRNPSSPLSSPFGFSKNPFPSKFLNPILSSDRFARIVSGTQDKLFDWHFAAGSEKGNEIGAIPKEGPIVTVVMLGWLGSKPKHLRSYGAILENLKNRQDLLEKIKGCVVDSGGDPDISPKVWAAGFTAAMLKKCSSFAYSSVEAGEGNEVERPLTLGNIQTKGAMMMETVLFATLEKLFSLLLNLPDVNERLTKIITVLVKNQPSCLQLYLYSTADKVIPIQSVESFIQEQRKIGREVHSFNFGSSPHVDHYRTFPDKYVSVLQKFLQECTLIPKGKRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26227" PGL_stop="29445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26227" e_stop="26257"/>
            <exon e_start="26857" e_stop="26992"/>
            <exon e_start="27199" e_stop="27227"/>
            <exon e_start="27687" e_stop="27752"/>
            <exon e_start="27872" e_stop="27979"/>
            <exon e_start="28098" e_stop="28163"/>
            <exon e_start="28568" e_stop="28688"/>
            <exon e_start="28946" e_stop="29027"/>
            <exon e_start="29129" e_stop="29445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.563" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.514" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.887" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26227" e_stop="26257" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26258" i_stop="26856" i_length="599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26857" e_stop="26992" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.563" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27199" e_stop="27227" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.975">
            <gDNA_intron_boundary i_start="27228" i_stop="27686" i_length="459"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27687" e_stop="27752" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.514">
            <gDNA_intron_boundary i_start="27753" i_stop="27871" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27872" e_stop="27979" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.879">
            <gDNA_intron_boundary i_start="27980" i_stop="28097" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28098" e_stop="28163" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28164" i_stop="28567" i_length="404"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28568" e_stop="28688" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.964">
            <gDNA_intron_boundary i_start="28689" i_stop="28945" i_length="257"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28946" e_stop="29027" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.887">
            <gDNA_intron_boundary i_start="29028" i_stop="29128" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="29129" e_stop="29445" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26227" stop="26257"/>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27227"/>
              <exon start="27687" stop="27752"/>
              <exon start="27872" stop="27979"/>
              <exon start="28098" stop="28163"/>
              <exon start="28568" stop="28688"/>
              <exon start="28946" stop="29027"/>
              <exon start="29129" stop="29325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26227" stop="26257"/>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27227"/>
              <exon start="27687" stop="27752"/>
              <exon start="27872" stop="27979"/>
              <exon start="28098" stop="28163"/>
              <exon start="28568" stop="28688"/>
              <exon start="28946" stop="29027"/>
              <exon start="29129" stop="29200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26235" stop="26257"/>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27227"/>
              <exon start="27687" stop="27752"/>
              <exon start="27872" stop="27979"/>
              <exon start="28098" stop="28163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27227"/>
              <exon start="27687" stop="27752"/>
              <exon start="27872" stop="27979"/>
              <exon start="28098" stop="28163"/>
              <exon start="28568" stop="28688"/>
              <exon start="28946" stop="28961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29002" stop="29027"/>
              <exon start="29129" stop="29445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29010" stop="29027"/>
              <exon start="29129" stop="29445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCTTCTCCTTCGCCCATCATCTCTCTCT : TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG : GGCCAGGTGCACCTTCAGTTTTCAACTGT : GTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAG : GTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAG : GAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAG : GGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTTTGAAGACT : ATAAAAAGAATGAGAACAAGTCAGTTGCCGTTGAGGACTTTCTTCCTGCTGAAGCAGCTGTAGATGCCATCAAGTATTCCAT : GGACCTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACTTGTTGTCACTACTGAAAATCGAAGCAGAAAAGCCAGTTGACTTGTTGACGATGGCTCCCTGAATTTCATATGCATACTTTAGTTTAATGTGGTAGTATCAAATACTATTTGAAATGCATGTAGAACTTTCAATTTTCATGAATTCAGTAAAGACGTGGAACAGAAAGCATCAAGAAAACCACTGGTAATGTGCAGTGGTAGTGCTGTAGAAAAAATGTTTGCTTAGTCTCAGCATCTACAAAAGTTTACAACATATTGAA</gDNA_template>
            <first_frame> C  P  S  P  S  P  I  I  S  L   : F  K  Y  G  *  K  *  W  K  S  D  W  K  K  L  R  N  L  P  C  C  A  *  *  K  N  S  F  L  H  V  T  K  I  Y  C  C  S  S  M  A  *  P  R  D  W :   A  R  C  T  F  S  F  Q  L   : C  G  *  N  R  Q  R  Q  Q  S  Q  V  *  A  *  Q  G  K  W  P  Y  K   : G  *  P  N  T  V  L  I  S  C  L  S  T  Q  L  W  F  H  S  K  N  P  L  R  R  Q  *  S  N  G  R  L  G  T  D  A   : G  T  C  V  T  K  Y  L  S  S  C  S  C  N  W  I  D  A  Y  D  *  S   : G  *  E  R  *  Q  D  N  S  S  V  C  R  *  S  R  V  S  P  L  H  R  H  Q  G  A  S  S  S  S  S  C  *  N  S  A  L  F  *  R  L :   *  K  E  *  E  Q  V  S  C  R  *  G  L  S  S  C  *  S  S  C  R  C  H  Q  V  F  H  :  G  P  V  C  F  L  H  C  G  K  F  E  E  V  T  L  L  R  T  C  C  H  Y  *  K  S  K  Q  K  S  Q  L  T  C  *  R  W  L  P  E  F  H  M  H  T  L  V  *  C  G  S  I  K  Y  Y  L  K  C  M  *  N  F  Q  F  S  *  I  Q  *  R  R  G  T  E  S  I  K  K  T  T  G  N  V  Q  W  *  C  C  R  K  N  V  C  L  V  S  A  S  T  K  V  Y  N  I  L   </first_frame>
            <second_frame>  V  L  L  L  R  P  S  S  L  S  :  L  N  M  A  E  N  S  G  K  A  I  G  R  N  S  G  T  S  R  V  A  L  N  E  R  I  L  S  S  M  S  R  K  S  I  A  A  H  P  W  H  D  L  E  I   : G  P  G  A  P  S  V  F  N  C  :  V  V  E  I  G  K  G  S  K  V  K  Y  E  L  D  K  A  S  G  L  I  K  :  V  D  R  I  L  Y  S  S  V  V  Y  P  H  N  Y  G  F  I  P  R  T  L  C  E  D  S  D  P  M  D  V  L  V  L  M  Q  :  E  P  V  L  P  S  T  F  L  R  A  R  A  I  G  L  M  P  M  I  D  Q  :  G  E  K  D  D  K  I  I  A  V  C  A  D  D  P  E  F  R  H  Y  T  D  I  K  E  L  P  P  H  R  L  A  E  I  R  R  F  F  E  D   : Y  K  K  N  E  N  K  S  V  A  V  E  D  F  L  P  A  E  A  A  V  D  A  I  K  Y  S  M :   D  L  Y  A  S  Y  I  V  E  S  L  R  K  *  P  C  *  G  L  V  V  T  T  E  N  R  S  R  K  A  S  *  L  V  D  D  G  S  L  N  F  I  C  I  L  *  F  N  V  V  V  S  N  T  I  *  N  A  C  R  T  F  N  F  H  E  F  S  K  D  V  E  Q  K  A  S  R  K  P  L  V  M  C  S  G  S  A  V  E  K  M  F  A  *  S  Q  H  L  Q  K  F  T  T  Y  *  </second_frame>
            <third_frame>   S  F  S  F  A  H  H  L  S  L :   *  I  W  L  K  I  V  E  K  R  L  E  E  T  Q  E  P  P  V  L  R  L  M  K  E  F  F  P  P  C  H  E  N  L  L  L  L  I  H  G  M  T  *  R  L  :  G  Q  V  H  L  Q  F  S  T  V :   W  L  K  *  A  K  A  A  K  S  S  M  S  L  T  R  Q  V  A  L  *  R :   L  T  E  Y  C  T  H  Q  L  F  I  H  T  T  M  V  S  F  Q  E  P  F  A  K  T  V  I  Q  W  T  S  W  Y  *  C  R :   N  L  C  Y  Q  V  P  F  F  V  L  V  Q  L  D  *  C  L  *  L  I  R :   V  R  K  M  T  R  *  *  Q  C  V  Q  M  I  P  S  F  A  T  T  Q  T  S  R  S  F  L  L  I  V  L  L  K  F  G  A  F  L  K  T  :  I  K  R  M  R  T  S  Q  L  P  L  R  T  F  F  L  L  K  Q  L  *  M  P  S  S  I  P   : W  T  C  M  L  L  T  L  W  K  V  *  G  S  D  L  V  E  D  L  L  S  L  L  K  I  E  A  E  K  P  V  D  L  L  T  M  A  P  *  I  S  Y  A  Y  F  S  L  M  W  *  Y  Q  I  L  F  E  M  H  V  E  L  S  I  F  M  N  S  V  K  T  W  N  R  K  H  Q  E  N  H  W  *  C  A  V  V  V  L  *  K  K  C  L  L  S  L  S  I  Y  K  S  L  Q  H  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26228" stop="26257"/>
                    <exon start="26857" stop="26992"/>
                    <exon start="27199" stop="27227"/>
                    <exon start="27687" stop="27752"/>
                    <exon start="27872" stop="27979"/>
                    <exon start="28098" stop="28163"/>
                    <exon start="28568" stop="28688"/>
                    <exon start="28946" stop="29027"/>
                    <exon start="29129" stop="29171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLLRPSSLSLNMAENSGKAIGRNSGTSRVALNERILSSMSRKSIAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRILYSSVVYPHNYGFIPRTLCEDSDPMDVLVLMQEPVLPSTFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDYKKNENKSVAVEDFLPAEAAVDAIKYSMDLYASYIVESLRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26857" e_stop="26992"/>
            <exon e_start="27199" e_stop="27752"/>
            <exon e_start="27872" e_stop="27979"/>
            <exon e_start="28098" e_stop="28163"/>
            <exon e_start="28568" e_stop="28680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.563" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.514" e_score="0.998"/>
          <exon-intron don_prob="0.930" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26857" e_stop="26992" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.563" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26993" i_stop="27198" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="27199" e_stop="27752" e_length="554"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.514">
            <gDNA_intron_boundary i_start="27753" i_stop="27871" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27872" e_stop="27979" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.879">
            <gDNA_intron_boundary i_start="27980" i_stop="28097" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28098" e_stop="28163" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28164" i_stop="28567" i_length="404"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28568" e_stop="28680" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26992"/>
              <exon start="27199" stop="27304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27549" stop="27752"/>
              <exon start="27872" stop="27979"/>
              <exon start="28098" stop="28163"/>
              <exon start="28568" stop="28680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATATGGCTGAAAATAGTGGAAAAGCGATTGGAAGAAACTCAGGAACCTCCCGTGTTGCGCTTAATGAAAGAATTCTTTCCTCCATGTCACGAAAATCTATTGCTGCTCATCCATGGCATGACCTAGAGATTG : GGCCAGGTGCACCTTCAGTTTTCAACTGTGTAAGTGTTTAAGTGCCAGTAATTCTTTTCTGAAATTATTTGATAAGGTACTTAAGTTACTCCGACAACCATAACCTTCTTATCTGGCTGTATTTGTCCACTTCTTTTTTGTTAGTAGTGATTTTCATTCTTTCCAGAAGATCATTTATTAAGTTCAAAGCAAAGGTGTTTCAATATATTTATACTGGTTTACTCTTTTTGTTTATCTAGTCAATAGTGGTCTTTGAATATTTCTACAGTTCTCAACTGGAAATATATAACAATGATTGGCAGTTTCACATACAGGAAAAAAATTCTAATGATATATTCCTACCTGCTATCTCACACGGGCTTGCACACCCATTATTATCTCTGTGATAGTTGTGATTATTTGTCGGGGGATATAGTCCCAACTCCCAAGTACTACACAGATGGCATTGAGTTTCACGCAAACTTATATCTTAAAGAGTTATTTGGCAGGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAGGCAAGTGGCCTTATAAAG : GTTGACCGAATACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATTCCAAGAACCCTTTGCGAAGACAGTGATCCAATGGACGTCTTGGTACTGATGCAG : GAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAG : GGTGAGAAAGATGACAAGATAATAGCAGTGTGTGCAGATGATCCCGAGTTTCGCCACTACACAGACATCAAGGAGCTTCCTCCTCATCGTCTTGCTGAAATTCGGCGCTTTTT</gDNA_template>
            <first_frame> L  N  M  A  E  N  S  G  K  A  I  G  R  N  S  G  T  S  R  V  A  L  N  E  R  I  L  S  S  M  S  R  K  S  I  A  A  H  P  W  H  D  L  E  I   : G  P  G  A  P  S  V  F  N  C  V  S  V  *  V  P  V  I  L  F  *  N  Y  L  I  R  Y  L  S  Y  S  D  N  H  N  L  L  I  W  L  Y  L  S  T  S  F  L  L  V  V  I  F  I  L  S  R  R  S  F  I  K  F  K  A  K  V  F  Q  Y  I  Y  T  G  L  L  F  L  F  I  *  S  I  V  V  F  E  Y  F  Y  S  S  Q  L  E  I  Y  N  N  D  W  Q  F  H  I  Q  E  K  N  S  N  D  I  F  L  P  A  I  S  H  G  L  A  H  P  L  L  S  L  *  *  L  *  L  F  V  G  G  Y  S  P  N  S  Q  V  L  H  R  W  H  *  V  S  R  K  L  I  S  *  R  V  I  W  Q  V  V  E  I  G  K  G  S  K  V  K  Y  E  L  D  K  A  S  G  L  I  K  :  V  D  R  I  L  Y  S  S  V  V  Y  P  H  N  Y  G  F  I  P  R  T  L  C  E  D  S  D  P  M  D  V  L  V  L  M  Q  :  E  P  V  L  P  S  T  F  L  R  A  R  A  I  G  L  M  P  M  I  D  Q  :  G  E  K  D  D  K  I  I  A  V  C  A  D  D  P  E  F  R  H  Y  T  D  I  K  E  L  P  P  H  R  L  A  E  I  R  R  F   </first_frame>
            <second_frame>  *  I  W  L  K  I  V  E  K  R  L  E  E  T  Q  E  P  P  V  L  R  L  M  K  E  F  F  P  P  C  H  E  N  L  L  L  L  I  H  G  M  T  *  R  L  :  G  Q  V  H  L  Q  F  S  T  V  *  V  F  K  C  Q  *  F  F  S  E  I  I  *  *  G  T  *  V  T  P  T  T  I  T  F  L  S  G  C  I  C  P  L  L  F  C  *  *  *  F  S  F  F  P  E  D  H  L  L  S  S  K  Q  R  C  F  N  I  F  I  L  V  Y  S  F  C  L  S  S  Q  *  W  S  L  N  I  S  T  V  L  N  W  K  Y  I  T  M  I  G  S  F  T  Y  R  K  K  I  L  M  I  Y  S  Y  L  L  S  H  T  G  L  H  T  H  Y  Y  L  C  D  S  C  D  Y  L  S  G  D  I  V  P  T  P  K  Y  Y  T  D  G  I  E  F  H  A  N  L  Y  L  K  E  L  F  G  R  W  L  K  *  A  K  A  A  K  S  S  M  S  L  T  R  Q  V  A  L  *  R :   L  T  E  Y  C  T  H  Q  L  F  I  H  T  T  M  V  S  F  Q  E  P  F  A  K  T  V  I  Q  W  T  S  W  Y  *  C  R :   N  L  C  Y  Q  V  P  F  F  V  L  V  Q  L  D  *  C  L  *  L  I  R :   V  R  K  M  T  R  *  *  Q  C  V  Q  M  I  P  S  F  A  T  T  Q  T  S  R  S  F  L  L  I  V  L  L  K  F  G  A  F  </second_frame>
            <third_frame>   K  Y  G  *  K  *  W  K  S  D  W  K  K  L  R  N  L  P  C  C  A  *  *  K  N  S  F  L  H  V  T  K  I  Y  C  C  S  S  M  A  *  P  R  D  W :   A  R  C  T  F  S  F  Q  L  C  K  C  L  S  A  S  N  S  F  L  K  L  F  D  K  V  L  K  L  L  R  Q  P  *  P  S  Y  L  A  V  F  V  H  F  F  F  V  S  S  D  F  H  S  F  Q  K  I  I  Y  *  V  Q  S  K  G  V  S  I  Y  L  Y  W  F  T  L  F  V  Y  L  V  N  S  G  L  *  I  F  L  Q  F  S  T  G  N  I  *  Q  *  L  A  V  S  H  T  G  K  K  F  *  *  Y  I  P  T  C  Y  L  T  R  A  C  T  P  I  I  I  S  V  I  V  V  I  I  C  R  G  I  *  S  Q  L  P  S  T  T  Q  M  A  L  S  F  T  Q  T  Y  I  L  K  S  Y  L  A  G  G  *  N  R  Q  R  Q  Q  S  Q  V  *  A  *  Q  G  K  W  P  Y  K   : G  *  P  N  T  V  L  I  S  C  L  S  T  Q  L  W  F  H  S  K  N  P  L  R  R  Q  *  S  N  G  R  L  G  T  D  A   : G  T  C  V  T  K  Y  L  S  S  C  S  C  N  W  I  D  A  Y  D  *  S   : G  *  E  R  *  Q  D  N  S  S  V  C  R  *  S  R  V  S  P  L  H  R  H  Q  G  A  S  S  S  S  S  C  *  N  S  A  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27672" stop="27752"/>
                    <exon start="27872" stop="27979"/>
                    <exon start="28098" stop="28163"/>
                    <exon start="28568" stop="28678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVIWQVVEIGKGSKVKYELDKASGLIKVDRILYSSVVYPHNYGFIPRTLCEDSDPMDVLVLMQEPVLPSTFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27445" stop="27699"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLNISTVLNWKYITMIGSFTYRKKILMIYSYLLSHTGLHTHYYLCDSCDYLSGDIVPTPKYYTDGIEFHANLYLKELFGRWLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30805" PGL_stop="35628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30805" e_stop="31087"/>
            <exon e_start="32478" e_stop="32621"/>
            <exon e_start="34770" e_stop="34895"/>
            <exon e_start="34988" e_stop="35139"/>
            <exon e_start="35508" e_stop="35628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30805" e_stop="31087" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.864">
            <gDNA_intron_boundary i_start="31088" i_stop="32477" i_length="1390"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32478" e_stop="32621" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32622" i_stop="34769" i_length="2148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34770" e_stop="34895" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.668">
            <gDNA_intron_boundary i_start="34896" i_stop="34987" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34988" e_stop="35139" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.987">
            <gDNA_intron_boundary i_start="35140" i_stop="35507" i_length="368"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35508" e_stop="35628" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30805" stop="31087"/>
              <exon start="32478" stop="32621"/>
              <exon start="34770" stop="34895"/>
              <exon start="34988" stop="35139"/>
              <exon start="35508" stop="35628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30807" stop="31087"/>
              <exon start="32478" stop="32621"/>
              <exon start="34770" stop="34895"/>
              <exon start="34988" stop="35016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30838" stop="31087"/>
              <exon start="32478" stop="32621"/>
              <exon start="34770" stop="34895"/>
              <exon start="34988" stop="35014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30866" stop="31087"/>
              <exon start="32478" stop="32621"/>
              <exon start="34770" stop="34895"/>
              <exon start="34988" stop="35071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30921" stop="31087"/>
              <exon start="32478" stop="32621"/>
              <exon start="34770" stop="34895"/>
              <exon start="34988" stop="35139"/>
              <exon start="35508" stop="35541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAAAACGAGAGCACTCAATAGGAGTCGGGGTTTGGGTTCAGCTCACTTCACCTTTTGCCCTTTGTGGTATCAACGCTCCTCATTTCTCAACTCCTCAGCTAAATAATCAAACAAATATACGTTTGAATTTGGAGAAATCCGGTTGTGGAATCGGAAGCAATAGAGGATGGGTTCGGCGATGAAAGCAATCTACACCGTTGGATTCTGGATCCGTGAGACAGGCCAAGCCCTTGATCGGTTGGGCTGCCGCCTCCAGGGAAACTATTACTTCCAAGAACACC : TCTCGAGGCATAGAACTTTGATGAACCTGTTTGACAAAGTACCAGTTGTTGAGAAAGATGCATTTGTGGCCCCAAGTGCCTCTATAATTGGTGATGTTCACATTGGTCGTAGTGCTTCTATTTGGTATGGGTGTGTTCTGCGAG : GTGATGTGAACAGTGTCAGCATTGGAGCCGGAACTAATGTCCAGGACAATTCTCTAATCCATGTAGCTAAATCGAATATCAGTGGAAAGGTTTTGCCTACGATAATTGGCAAAAATGTTACCATAG : GTCATAGCGCTGTGTTACATGGATGTACTGTTGAAGACGAGGCATTTATTGGTATGGGTGCAACCGTGCTTGATGGAGCTGTTGTGGAGAAAAATGCTATGGTCGCTGCTGGTGCCCATGTAAGACAGAATACAAGGATTCCATTCGGAGAG : GTCTGGGGAGGAAATCCAGCGAGGTTCTTGAGGAAGCTCACAGAAGAAGAAATAGCGTTCATCTCAGAGTCAGCCGCAAACTATTCTAATTTAGCGCAGGTTCATGCAGCTGAAAATGCAA</gDNA_template>
            <first_frame> V  K  T  R  A  L  N  R  S  R  G  L  G  S  A  H  F  T  F  C  P  L  W  Y  Q  R  S  S  F  L  N  S  S  A  K  *  S  N  K  Y  T  F  E  F  G  E  I  R  L  W  N  R  K  Q  *  R  M  G  S  A  M  K  A  I  Y  T  V  G  F  W  I  R  E  T  G  Q  A  L  D  R  L  G  C  R  L  Q  G  N  Y  Y  F  Q  E  H   : L  S  R  H  R  T  L  M  N  L  F  D  K  V  P  V  V  E  K  D  A  F  V  A  P  S  A  S  I  I  G  D  V  H  I  G  R  S  A  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  V  S  I  G  A  G  T  N  V  Q  D  N  S  L  I  H  V  A  K  S  N  I  S  G  K  V  L  P  T  I  I  G  K  N  V  T  I   : G  H  S  A  V  L  H  G  C  T  V  E  D  E  A  F  I  G  M  G  A  T  V  L  D  G  A  V  V  E  K  N  A  M  V  A  A  G  A  H  V  R  Q  N  T  R  I  P  F  G  E  :  V  W  G  G  N  P  A  R  F  L  R  K  L  T  E  E  E  I  A  F  I  S  E  S  A  A  N  Y  S  N  L  A  Q  V  H  A  A  E  N  A  </first_frame>
            <second_frame>  L  K  R  E  H  S  I  G  V  G  V  W  V  Q  L  T  S  P  F  A  L  C  G  I  N  A  P  H  F  S  T  P  Q  L  N  N  Q  T  N  I  R  L  N  L  E  K  S  G  C  G  I  G  S  N  R  G  W  V  R  R  *  K  Q  S  T  P  L  D  S  G  S  V  R  Q  A  K  P  L  I  G  W  A  A  A  S  R  E  T  I  T  S  K  N  T  :  S  R  G  I  E  L  *  *  T  C  L  T  K  Y  Q  L  L  R  K  M  H  L  W  P  Q  V  P  L  *  L  V  M  F  T  L  V  V  V  L  L  F  G  M  G  V  F  C  E  :  V  M  *  T  V  S  A  L  E  P  E  L  M  S  R  T  I  L  *  S  M  *  L  N  R  I  S  V  E  R  F  C  L  R  *  L  A  K  M  L  P  *  :  V  I  A  L  C  Y  M  D  V  L  L  K  T  R  H  L  L  V  W  V  Q  P  C  L  M  E  L  L  W  R  K  M  L  W  S  L  L  V  P  M  *  D  R  I  Q  G  F  H  S  E  R :   S  G  E  E  I  Q  R  G  S  *  G  S  S  Q  K  K  K  *  R  S  S  Q  S  Q  P  Q  T  I  L  I  *  R  R  F  M  Q  L  K  M  Q </second_frame>
            <third_frame>   *  N  E  S  T  Q  *  E  S  G  F  G  F  S  S  L  H  L  L  P  F  V  V  S  T  L  L  I  S  Q  L  L  S  *  I  I  K  Q  I  Y  V  *  I  W  R  N  P  V  V  E  S  E  A  I  E  D  G  F  G  D  E  S  N  L  H  R  W  I  L  D  P  *  D  R  P  S  P  *  S  V  G  L  P  P  P  G  K  L  L  L  P  R  T  P :   L  E  A  *  N  F  D  E  P  V  *  Q  S  T  S  C  *  E  R  C  I  C  G  P  K  C  L  Y  N  W  *  C  S  H  W  S  *  C  F  Y  L  V  W  V  C  S  A  R :   *  C  E  Q  C  Q  H  W  S  R  N  *  C  P  G  Q  F  S  N  P  C  S  *  I  E  Y  Q  W  K  G  F  A  Y  D  N  W  Q  K  C  Y  H  R :   S  *  R  C  V  T  W  M  Y  C  *  R  R  G  I  Y  W  Y  G  C  N  R  A  *  W  S  C  C  G  E  K  C  Y  G  R  C  W  C  P  C  K  T  E  Y  K  D  S  I  R  R   : G  L  G  R  K  S  S  E  V  L  E  E  A  H  R  R  R  N  S  V  H  L  R  V  S  R  K  L  F  *  F  S  A  G  S  C  S  *  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0213A01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30970" stop="31087"/>
                    <exon start="32478" stop="32621"/>
                    <exon start="34770" stop="34895"/>
                    <exon start="34988" stop="35139"/>
                    <exon start="35508" stop="35627"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMGSAMKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEHLSRHRTLMNLFDKVPVVEKDAFVAPSASIIGDVHIGRSASIWYGCVLRGDVNSVSIGAGTNVQDNSLIHVAKSNISGKVLPTIIGKNVTIGHSAVLHGCTVEDEAFIGMGATVLDGAVVEKNAMVAAGAHVRQNTRIPFGEVWGGNPARFLRKLTEEEIAFISESAANYSNLAQVHAAENA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32691" e_stop="33275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32691" e_stop="33275" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32691" stop="33275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACCCTTCTTATAGAAGTATGCGGCTGTTATACTGATTGATTTTGAAATATACATTTTTTGTCGTGGTAAAATTTTCCTGGAGACATATGACGAGTGTGAGAAAAGTATTCCTTCTTGTATCACAAAATATTTGTCTTTTCTTGAATTATGGTAATGGGTAGATATTTCAGAGACAACTGCATTATGGACTCGTCAAGCTTTATAGTTGAATCAACAGTATGTCCTATGCCAAATCTTTATTTATAAAATGTTGTTTGTTGATAGTTAGCTCAGCATGTAAAGATTGCTTATTTTATCGAAATGCAGCATTATGATTTTACTTGTTTTTCAGAACTGATAAGTTTGATATATATCATGCAGTGGTAGTTCCCTATAAGACAAAGACAGTAGATATTGCTAATTTCTTGAAATACAACATTATAAGGTCACATGCCTTGCCGAACCTGGTAGTCCTGTTGTTTATGTCGTCCAGTAGTTCTTATTTGTAAGACAAGTAGTAAGACTGAGTGTACAATCTTTTCTGCACATCATAGGTAATTAAGCCTTTCTTCTAATTTAGTTACGATGTATTAATTCTTTTT</gDNA_template>
            <first_frame> *  N  P  S  Y  R  S  M  R  L  L  Y  *  L  I  L  K  Y  T  F  F  V  V  V  K  F  S  W  R  H  M  T  S  V  R  K  V  F  L  L  V  S  Q  N  I  C  L  F  L  N  Y  G  N  G  *  I  F  Q  R  Q  L  H  Y  G  L  V  K  L  Y  S  *  I  N  S  M  S  Y  A  K  S  L  F  I  K  C  C  L  L  I  V  S  S  A  C  K  D  C  L  F  Y  R  N  A  A  L  *  F  Y  L  F  F  R  T  D  K  F  D  I  Y  H  A  V  V  V  P  Y  K  T  K  T  V  D  I  A  N  F  L  K  Y  N  I  I  R  S  H  A  L  P  N  L  V  V  L  L  F  M  S  S  S  S  S  Y  L  *  D  K  *  *  D  *  V  Y  N  L  F  C  T  S  *  V  I  K  P  F  F  *  F  S  Y  D  V  L  I  L  F </first_frame>
            <second_frame>  K  T  L  L  I  E  V  C  G  C  Y  T  D  *  F  *  N  I  H  F  L  S  W  *  N  F  P  G  D  I  *  R  V  *  E  K  Y  S  F  L  Y  H  K  I  F  V  F  S  *  I  M  V  M  G  R  Y  F  R  D  N  C  I  M  D  S  S  S  F  I  V  E  S  T  V  C  P  M  P  N  L  Y  L  *  N  V  V  C  *  *  L  A  Q  H  V  K  I  A  Y  F  I  E  M  Q  H  Y  D  F  T  C  F  S  E  L  I  S  L  I  Y  I  M  Q  W  *  F  P  I  R  Q  R  Q  *  I  L  L  I  S  *  N  T  T  L  *  G  H  M  P  C  R  T  W  *  S  C  C  L  C  R  P  V  V  L  I  C  K  T  S  S  K  T  E  C  T  I  F  S  A  H  H  R  *  L  S  L  S  S  N  L  V  T  M  Y  *  F  F   </second_frame>
            <third_frame>   K  P  F  L  *  K  Y  A  A  V  I  L  I  D  F  E  I  Y  I  F  C  R  G  K  I  F  L  E  T  Y  D  E  C  E  K  S  I  P  S  C  I  T  K  Y  L  S  F  L  E  L  W  *  W  V  D  I  S  E  T  T  A  L  W  T  R  Q  A  L  *  L  N  Q  Q  Y  V  L  C  Q  I  F  I  Y  K  M  L  F  V  D  S  *  L  S  M  *  R  L  L  I  L  S  K  C  S  I  M  I  L  L  V  F  Q  N  *  *  V  *  Y  I  S  C  S  G  S  S  L  *  D  K  D  S  R  Y  C  *  F  L  E  I  Q  H  Y  K  V  T  C  L  A  E  P  G  S  P  V  V  Y  V  V  Q  *  F  L  F  V  R  Q  V  V  R  L  S  V  Q  S  F  L  H  I  I  G  N  *  A  F  L  L  I  *  L  R  C  I  N  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0213A01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35630" PGL_stop="36043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35630" e_stop="36043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35630" e_stop="36043" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35630" stop="36043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTGGATAAGATTGAATTTGAGAAGGTGCTGCGAAAGAAACTAGCGCGCAAGGATGAGGAGTATGACTCTATGTTGGGTGTTAGTGAAACACCTCCAGAGCTTGTCCTGCCTGATAGTAGCCTACCAGACAAGGCACCAAAGGCCTCCTAAGTGTGGTTTCCATCTGGGGTATCCTGGGATTTTGTGATGTTATTGGGTAACTCTTTTTTGTTTTGGGCGGATTAACGTCAAAATGCCTGTGATTAGTTTCCAATAATTAAGGCCAAGCTGAAATATCAAAGTTTAATACGGGTATGCAGCTGTAGCATTTTTCTACTTATCATGTCTGGCTGATCAGTCTTTTGATGTTCTTGAAAAAACAAGGTTACACTAGAGCTTATATTTGTCTGTTTAAGCAATATGAGAAACTT</gDNA_template>
            <first_frame> R  V  G  *  D  *  I  *  E  G  A  A  K  E  T  S  A  Q  G  *  G  V  *  L  Y  V  G  C  *  *  N  T  S  R  A  C  P  A  *  *  *  P  T  R  Q  G  T  K  G  L  L  S  V  V  S  I  W  G  I  L  G  F  C  D  V  I  G  *  L  F  F  V  L  G  G  L  T  S  K  C  L  *  L  V  S  N  N  *  G  Q  A  E  I  S  K  F  N  T  G  M  Q  L  *  H  F  S  T  Y  H  V  W  L  I  S  L  L  M  F  L  K  K  Q  G  Y  T  R  A  Y  I  C  L  F  K  Q  Y  E  K  L </first_frame>
            <second_frame>  E  L  D  K  I  E  F  E  K  V  L  R  K  K  L  A  R  K  D  E  E  Y  D  S  M  L  G  V  S  E  T  P  P  E  L  V  L  P  D  S  S  L  P  D  K  A  P  K  A  S  *  V  W  F  P  S  G  V  S  W  D  F  V  M  L  L  G  N  S  F  L  F  W  A  D  *  R  Q  N  A  C  D  *  F  P  I  I  K  A  K  L  K  Y  Q  S  L  I  R  V  C  S  C  S  I  F  L  L  I  M  S  G  *  S  V  F  *  C  S  *  K  N  K  V  T  L  E  L  I  F  V  C  L  S  N  M  R  N   </second_frame>
            <third_frame>   S  W  I  R  L  N  L  R  R  C  C  E  R  N  *  R  A  R  M  R  S  M  T  L  C  W  V  L  V  K  H  L  Q  S  L  S  C  L  I  V  A  Y  Q  T  R  H  Q  R  P  P  K  C  G  F  H  L  G  Y  P  G  I  L  *  C  Y  W  V  T  L  F  C  F  G  R  I  N  V  K  M  P  V  I  S  F  Q  *  L  R  P  S  *  N  I  K  V  *  Y  G  Y  A  A  V  A  F  F  Y  L  S  C  L  A  D  Q  S  F  D  V  L  E  K  T  R  L  H  *  S  L  Y  L  S  V  *  A  I  *  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0213A01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 72 chains have been computed
$ 
$ memory statistics:
$ 119552 bytes spliced alignments in total
$ 58 spliced alignments have been stored
$ 2061 bytes was the average size of a spliced alignment
$ 13352 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2225 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 74 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:02:41
-->
