<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:06:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG250-F" ref_strand="+" ref_description="TG250-F">
      <seq>tcctagatatgcttgtgcaattgtcctttttccacaacacagtagcaacaaatgggaaaatacacaagaacatacattacaaggcaacaggtgaataagtatctggtgaaatttacagcaagttctttaagttcacttgtacacaaatagctcacatgcatgtgcagaaggcaggaacatggatatttgtcattgatgctggtgacttggtggtaaagtgaattaaatgatacgtaccttgtctaagtatgaatccaggcatggaattcggcgcctggacattacaagctgggaaataaaagcagtccatcgataagaaaaggttccagcaataattaagggccataacaatacatttcatatcaagttcataaacaaaatttggcatgctattggaccattacacatattcatttaacacatgattcctcaatgaattctctaataatcaaatacttctatacgctttagaagattagaaggaaatgacatatttcatttgctatacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0204A09.1" temp_strand="+" temp_description="C02HBa0204A09.1  AC215418.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0204A09 sequenced_by:kribb upload_account_name:korea">
        <position start="56457" stop="57569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56757" g_stop="57269" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0204A09.1" gen_strand="+" ref_id="TG250-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0204A09.1" gen_strand="+"/>
        <rDNA rDNA_id="TG250-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56757" e_stop="57269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAGATATGCTTGTGCAATTGTCCTTTTTCCACAACACAGTAGCAACAAATGGGAAAATACACAAGAACATACATTACAAGGCAACAGGTGAATAAGTATCTGGTGAAATTTACAGCAAGTTCTTTAAGTTCACTTGTACACAAATAGCTCACATGCATGTGCAGAAGGCAGGAACATGGATATTTGTCATTGATGCTGGTGACTTGGTGGTAAAGTGAATTAAATGATACGTACCTTGTCTAAGTATGAATCCAGGCATGGAATTCGGCGCCTGGACATTACAAGCTGGGAAATAAAAGCAGTCCATCGATAAGAAAAGGTTCCAGCAATAATTAAGGGCCATAACAATACATTTCATATCAAGTTCATAAACAAAATTTGGCATGCTATTGGACCATTACACATATTCATTTAACACATGATTCCTCAATGAATTCTCTAATAATCAAATACTTCTATACGCTTTAGAAGATTAGAAGGAAATGACATATTTCATTTGCTATACTTCTA</genome_strand>
        <mrna_strand>TCCTAGATATGCTTGTGCAATTGTCCTTTTTCCACAACACAGTAGCAACAAATGGGAAAATACACAAGAACATACATTACAAGGCAACAGGTGAATAAGTATCTGGTGAAATTTACAGCAAGTTCTTTAAGTTCACTTGTACACAAATAGCTCACATGCATGTGCAGAAGGCAGGAACATGGATATTTGTCATTGATGCTGGTGACTTGGTGGTAAAGTGAATTAAATGATACGTACCTTGTCTAAGTATGAATCCAGGCATGGAATTCGGCGCCTGGACATTACAAGCTGGGAAATAAAAGCAGTCCATCGATAAGAAAAGGTTCCAGCAATAATTAAGGGCCATAACAATACATTTCATATCAAGTTCATAAACAAAATTTGGCATGCTATTGGACCATTACACATATTCATTTAACACATGATTCCTCAATGAATTCTCTAATAATCAAATACTTCTATACGCTTTAGAAGATTAGAAGGAAATGACATATTTCATTTGCTATACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG250-R" ref_strand="+" ref_description="TG250-R">
      <seq>tatagggagacagcctgcatgcctgcagataaaaatcacgattgtgcttaaagtatttattggtaaataaaaaatcagatttcaaaagtatcttgacaacccaaatcaacctgcttaacagaagttgtatatgcagttcctaggactatcaacctaatctcatgttgcttttaattcattaaattaagtagagatctccttctccggttctcccaatctgtattctgacaattctcaaacaccttcagtacatgctgaaatataaaaagggctgcccactgtactaaagctccttcacacatgctgaagtatgcaaatgttaattttgataggaataatgcaaattcttggattttcaatgagattaatgattaacatttgatatcaggcccgttttcagtaattgatgagcatttcagcacaattcttcctaatagttttgatgcaattggcttaatgctcatgattcgcatcatacaccagcaccaggtatatccctacacttctgttctcgtattaaatttcaaagcaaacacagctagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0204A09.1" temp_strand="-" temp_description="C02HBa0204A09.1  AC215418.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0204A09 sequenced_by:kribb upload_account_name:korea">
        <position start="58846" stop="57718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58536" g_stop="58018" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="547" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0204A09.1" gen_strand="-" ref_id="TG250-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0204A09.1" gen_strand="-"/>
        <rDNA rDNA_id="TG250-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58536" e_stop="58018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATCACGATTGTGCTTAAAGTATTTATTGGTAAATAAAAAATCAGATTTCAAAAGTATCTTGACAACCCAAATCAACCTGCTTAACAGAAGTTGTATATGCAGTTCCTAGGACTATCAACCTAATCTCATGTTGCTTTTAATTCATTAAATTAAGTAGAGATCTCCTTCTCCGGTTCTCCCAATCTGTATTCTGACAATTCTCAAACACCTTCAGTACATGCTGAAATATAAAAAGGGCTGCCCACTGTACTAAAGCTCCTTCACACATGCTGAAGTATGCAAATGTTAATTTTGATAGGAATAATGCAAATTCTTGGATTTTCAATGAGATTAATGATTAACATTTGATATCAGGCCCGTTTTCAGTAATTGATGAGCATTTCAGCACAATTCTTCCTAATAGTTTTGATGCAATTGGCTTAATGCTCATGATTCGCATCATACACCAGCACCAGGTATATCCCTACACTTCTGTTCTCGTATTAAATTTCAAAGCAAACACAGCTAGTATTA</genome_strand>
        <mrna_strand>ATAAAAATCACGATTGTGCTTAAAGTATTTATTGGTAAATAAAAAATCAGATTTCAAAAGTATCTTGACAACCCAAATCAACCTGCTTAACAGAAGTTGTATATGCAGTTCCTAGGACTATCAACCTAATCTCATGTTGCTTTTAATTCATTAAATTAAGTAGAGATCTCCTTCTCCGGTTCTCCCAATCTGTATTCTGACAATTCTCAAACACCTTCAGTACATGCTGAAATATAAAAAGGGCTGCCCACTGTACTAAAGCTCCTTCACACATGCTGAAGTATGCAAATGTTAATTTTGATAGGAATAATGCAAATTCTTGGATTTTCAATGAGATTAATGATTAACATTTGATATCAGGCCCGTTTTCAGTAATTGATGAGCATTTCAGCACAATTCTTCCTAATAGTTTTGATGCAATTGGCTTAATGCTCATGATTCGCATCATACACCAGCACCAGGTATATCCCTACACTTCTGTTCTCGTATTAAATTTCAAAGCAAACACAGCTAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g01920" ref_strand="+" ref_description="C2_At3g01920">
      <seq>ctcattctttctcaataggatgattgtaggtgtggaagagatgtcattggaaactaaagcactgggacactgtggagttaccggagcagtgcctctctcattccgtcgctctctctcttcattccccactcgcctgtcgttccacactgccgttcctccccaaacccgccgattccaatccttggcggtggttaagagaagtcctaaacgcctcaaatactcggctcctcgcttaactaaggaagatggattgctctatgttcaagttgatcaatttggctcggattcctggaagttggatccagttgttgaacttcttaaaggaggagctgttggagtcattcccacagacactctgtacgcaatagtttgtgatctgaacagtcattcagccattgaacgtcttcgtagaataaaagagatagaaccttcaaagccccttagtatcatttgtcgatctttccgcgacatagatacatatacaactggatttccccgtggtaatgcccaaggtcttacagacatttttcgagcagtcaagcactgtctacccggtccttacactttcatcttaactgctagcaaacagctaccaaaacaatgcacgagatacgggactgcaacttccaaatatgcttcaaggaaacatgttggtgttcgtatacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0204A09.1" temp_strand="+" temp_description="C02HBa0204A09.1  AC215418.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0204A09 sequenced_by:kribb upload_account_name:korea">
        <position start="115011" stop="117833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115330" g_stop="115551" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="241" r_length="222" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115552" i_stop="115668" i_length="117">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115669" g_stop="115784" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="357" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115785" i_stop="116539" i_length="755">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116540" g_stop="116593" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116594" i_stop="116700" i_length="107">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.776" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116701" g_stop="116725" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="436" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116726" i_stop="116902" i_length="177">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116903" g_stop="117025" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="559" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117026" i_stop="117422" i_length="397">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117423" g_stop="117533" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="670" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0204A09.1" gen_strand="+" ref_id="C2_At3g01920" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0204A09.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g01920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115330" e_stop="115551"/>
          <exon e_start="115669" e_stop="115784"/>
          <exon e_start="116540" e_stop="116593"/>
          <exon e_start="116701" e_stop="116725"/>
          <exon e_start="116903" e_stop="117025"/>
          <exon e_start="117423" e_stop="117533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGTAGGTGTGGAAGAGATGTCATTGGAAGCTAAAGCATTGGGACACTCTGGAATTGCCGGAGCAGTGCCTCTCTCATTCCGTCGCTCTTTTTCTTCATTCCCCACTCGTTTGTCGTTCCACACTGCCGTTCCTCCCCAAACCCGCCGATTCCAATCCTTGGCGGTTATTAAGAGAAGTCCTAAACGCCTCAAATACTCGGCTCCTCGCTTAACTAAGGTTTGAATCTCTCAATTTTAATATGCCCTGTTCCTTGCTTATAGTTAGCAAGTACTCCAACTACGCATGACTTATTACTATTCTCTTTCTTATGTACTAATACTCGAAACGTGGTAGGAAGATGGATTGCTCTATGTTCAAGTTGATCAATTTGGCTCGGATTCTTGGAAGTTGGATCCAGTTGTTGAACTTCTTAAAGGAGGAGCTGTTGGAGTCATTCCCACTGACACTCTGTATGTTTTATTTCTCTTCTTTTTTTATCAATTAGTTTGTGTTTATACCTGAACGGCTTCTCTTGATGGTTAATTATACTTATTACTCTATCCATATTAACAATTTTGGTTCAACTTCTGATTGAGTCATGTAAAAATGAAAATGCTAATATAACCTTCCATGTATCTCCAAGTTTATTTTCTGTTCTACTATTCAATCATTTCGGTATTACTTGATACTAGGACTTGCATATCAATATCTTGTGTTAGGACTTACTCCCTTTTTTCCTTCATACCTCCATTAGTCAAACTAGGTAATCATATTTTACCTTTTCATTCCTTTCCTCAACAATAAAGCCTGAATTTTAGGCTTTTAAATATTATAGACTTTAAGCATCAAACCTACTTCACTTAATGGATTTAAGCTTCGCTGGAAGTGTTGCAACATGGTCATCCGATAATGCAATGTTGTTTTGAGATTAGATAGAGTGAGGTTGACTTTAGTCCGCTAGGGAATATGAGTGATCATCATTTTTTCAATCAGATGGATAGTAAAATGGACATACTGCTGGAAGCCATTCCCAAACAGTGACATTTGGATGATAATCATCACGTTCCAATCACTGCAAGTATAAAGCATCTTAATTCTTTGCAATATGAAGTTGTGTTATATAAAAATGAATTGGAGGAGTATCAATTTGGTTAAGAAGTGTACTTTAAGCCTCGATCAGAATCTTTTATAGCCTGAATTCTGATATTTGACATCTTTCAAACAGGTATGCAATAGTTTGTGATCTGAGCAGTCATTCAGCCATTGAACGTCTTCGTAGGTTAGTTCTACTAAACCTCTCTGGTAGCGTAAATTAATGCTTTACATTTCTTTCTCGGGTCCCTTGATGACAATGTCCATTTCTTTTTTGTTTGTTCTTTTGGCCAGAATAAAAGAGATAGAACCTTCAAAGGCAAGTTGCATTTATGTTGCTGAACTGAACCATTGCATCAGATAAAGCAACCCAGTTGATGCTGGATCTGATTCAATGCCTTTATTTTTTGTTTCCTTCCCTGCCTATGTACCTCCATATTTGTCACTTGTACTGTCCTTTATGCTGTCTTCTTTACGATCTTCTACGATTTTACAGCCCCTAAGTATCATTTGTCGATCTTTCCGCGACATAGATACATATACAACTGGATTTCCCCGTGGTAATGCCCAAGGTCTTACAGACATTTTTCGAGCAGTCAAGCACTGTCTACCTGGTCCTGTAAGTATGTGTAACGTGTTCTATAGACGATTATTGTGCTGAAAATTGTTAACAAATTTTCCGATTTAGATTTTTAATAAATCTGGTATACGTATGTCGGGAGTGTAGGAAGTCTAGTGATACCCTAGAGTCGAATTTCTTCATCAGGTTTTGCGCTATGTGGTATGATAGTTTCTTTTGCTACTTAAATTCCTTGTTGGTTGTCGACTTACTTCATGCTTATTTTTTCCTTTATTCTTTACGTGCGGGGTGGGTGGGTGGGGTGGGGGTGCATGAGGTGACTTTAAGATTGTTTGACTCATTAAATCTTTGACATTTTGGGTACCCAGGTCTGAGTAGTCCTGTAGATATCTTGATACTGATAATGTACCTAAACTATTAATCACCTGTGTGGCAGTACACTTTCATCTTAACTGCTAGCAAACAGCTACCAAAACAATGCACGAGATACGGGTCTGCAACTTCCAAATATGCTTCAAGGAAAAATGTTGGTGTTCGTATACCTGAT</genome_strand>
        <mrna_strand>ATGATTGTAGGTGTGGAAGAGATGTCATTGGAAACTAAAGCACTGGGACACTGTGGAGTTACCGGAGCAGTGCCTCTCTCATTCCGTCGCTCTCTCTCTTCATTCCCCACTCGCCTGTCGTTCCACACTGCCGTTCCTCCCCAAACCCGCCGATTCCAATCCTTGGCGGTGGTTAAGAGAAGTCCTAAACGCCTCAAATACTCGGCTCCTCGCTTAACTAAG.....................................................................................................................GAAGATGGATTGCTCTATGTTCAAGTTGATCAATTTGGCTCGGATTCCTGGAAGTTGGATCCAGTTGTTGAACTTCTTAAAGGAGGAGCTGTTGGAGTCATTCCCACAGACACTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCAATAGTTTGTGATCTGAACAGTCATTCAGCCATTGAACGTCTTCGTAG...........................................................................................................AATAAAAGAGATAGAACCTTCAAAG.................................................................................................................................................................................CCCCTTAGTATCATTTGTCGATCTTTCCGCGACATAGATACATATACAACTGGATTTCCCCGTGGTAATGCCCAAGGTCTTACAGACATTTTTCGAGCAGTCAAGCACTGTCTACCCGGTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................TACACTTTCATCTTAACTGCTAGCAAACAGCTACCAAAACAATGCACGAGATACGGGACTGCAACTTCCAAATATGCTTCAAGGAAACATGTTGGTGTTCGTATACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1142" ref_strand="+" ref_description="T1142">
      <seq>gcctagaatttcttatccaaaacaaaatatgcctcttatcccagaagagcctttgctggcctctaacccagatcgattctgtatgttcccaattcagtatccacagatttgggaaatgttcaagaaagccatggcatctttctggacggcagaagaagtcgatctctccaccgatactcgtcactgggaaaacctaacatccggcgaaaggcatttcatcactcatgttcttgccttttttgccgcctcagacggcatcgttttagagaacctcgctggatggttcatgaaagatgtccaggttgccgaggctcgtgctttctatgggttccaaatcgccattgagaatatccattccgagatgtacagtttgctgttggagtcgtacatcaaggattctgacgaatagagcaaattgttccgtgcaattgagacaatcccttgcgttgaaaagaaagcgaaatgggcccttcgttggatcgatgggtccgaaactttcgcggagcgtttggtggcttttgctggcgttgaagggattttcttcagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0204A09.1" temp_strand="+" temp_description="C02HBa0204A09.1  AC215418.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0204A09 sequenced_by:kribb upload_account_name:korea">
        <position start="120031" stop="121178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120330" g_stop="120878" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0204A09.1" gen_strand="+" ref_id="T1142" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0204A09.1" gen_strand="+"/>
        <rDNA rDNA_id="T1142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120330" e_stop="120878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAGAATTTCTTATCCAAAACAAAATATGCCTCTTATCCCAGAAGAGCCTTTGCTCGCCTCTAACCCAGATCGATTCTGTATGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGCGGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGG</genome_strand>
        <mrna_strand>GCCTAGAATTTCTTATCCAAAACAAAATATGCCTCTTATCCCAGAAGAGCCTTTGCTGGCCTCTAACCCAGATCGATTCTGTATGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTTCAAGAAAGCCATGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCCGGCGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGATGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAATAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGCGTTGAAAAGAAAGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGCGGAGCGTTTGGTGGCTTTTGCTGGCGTTGAAGGGATTTTCTTCAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g14140" ref_strand="+" ref_description="C2_At5g14140">
      <seq>tttgataggcaaatcgaattagggtttccgttctggagcccaactcgtcgacgttttggtcctgatgatcccttcttcgcttacggtaacattcaaagagagcttctcgctaagcaggttgcattggatttgactgaagaagagaaccagttagttcaaaatagtatcacagatgacgaaatcagcaatctcttctgtccaatcattggttgtggtgcacagatgaaaaatctggatgactttgaagaccactatgttacacgacatactgcatcttgttctgtatgctctcgagtttacccaacatcacgcctgctcagcatacatgtgtcagaggctcatgattccttttttcaggcaaaagctgctcgaggctttcccatgtatgagtgccttgtggaaggctgtgatatcaagttgaaaagctacaaaagcaggcagcaacatcttgttgacaagcataaatttccagcatcttatgagttcttcagaaaagctcgtccatcaaaaaaacagaggctgaagccgcatcataaacaagcatctaataagactcaggagaagtcaagtgcaatgcaagttgaggaagaaacaatagacaatctcgtttcagcggtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0204A09-iMAMa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0204A09.1" temp_strand="-" temp_description="C02HBa0204A09.1  AC215418.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0204A09 sequenced_by:kribb upload_account_name:korea">
        <position start="125746" stop="122076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125446" g_stop="125330" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125329" i_stop="125246" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125245" g_stop="125178" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="185" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125177" i_stop="123944" i_length="1234">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123943" g_stop="123745" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="384" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123744" i_stop="122613" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122612" g_stop="122376" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="621" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0204A09.1" gen_strand="-" ref_id="C2_At5g14140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0204A09.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g14140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125446" e_stop="125330"/>
          <exon e_start="125245" e_stop="125178"/>
          <exon e_start="123943" e_stop="123745"/>
          <exon e_start="122612" e_stop="122376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAGGCAAATCGAATTAGGGTTTCCGTTCTGGAGCCCAACTCGTCGACGTTTTGGTCCTGATGATCCCTTCTTCGCTTACGGTAACATTCAAAGAGAGCTTCTCGCTAAGCAGGTTCGTTCCTTTTCCCTCCTCTCTATCCTCTCCATAATTTGAACTAGCGATCTATCTGTTCACTCCCTTTTTCTTCATTTCCAGGTTGCATTGGATTTGACTGAAGAAGAGAACCAGTTAGTTCAAAATAGTATCACAGATGACGAAATCAGGTATACCTATTGAAGCTCTTCCATAGTTTATCGGATTTATATACTGAGAAACATCAGAAGACAGTGACATTAAACTATAATTTTGAAGGATATTTTAACAGAATTCAGGTTCACGTTCTTAATCAGCTGCTCTTCCCTTTTTGTTGAGATTGAGGAAATATGCACTTATCTATGTGTCTGCTAGTAGCCTCAAGTACAAAAGAGAAGTTGGAATAGTTAGGATATACGTTAGGACGTGGTTGCAAAATTCTAATTAAATATGTTTTGCTGTTTTTTGTGTTGCAAAGTCGAGTGAAAGATCAGAGCCTTGATTATAGATTAAGAATAGGTGAGAATCGTGAGATGTTGATCCTTAGATACTAATATCTTCATGATGTCAGCTGTCTTTACATGCTTTTTAATGCAGTAACCTGCGAAGGTTGCTGCAGTGACGAGTTTAATACTGGGCATTTCTTTATAGTTGAATGTTGTTGGCTTTTTATCAAACACCCTTACATACTCAAGCGAAGGGTATTAAACACTTCTTGGTATACAGATAAGTTGAGAGCTGCATCCGCACAAGGAAGGTTAGGTGCACAAGCAAAAGGAAGATGGTGACAGAACTGAAAGGGAAGAAAAATTCCCCAAAAGAGTGCTTAATGTCAGTATACTGATGAATTTTCTAATAAAAATAAGCTTAGGAAAGCGGGCAACGGCTACCTCTTTTTTTTCAGTTCTGTGGTCAGCCCAAAATCGAGAACGCAGAAGTTAAGGGCTGGATTAAATTGTATCTTTATGTCTAGATATTTACAGGAGCTGAGATAATAAAGAAGAAACTAGAGGCTAACTTTACCATATATCGGTTTCCACTTTCTGGTACTAGTCAGAATATTGATCTGCAGGAAGTTTTGCATAGATTGAATAATGACCTAGTTTTGTGTTTACTATGTGATACAATCACTGTATCACTTTCTCAGATCTTCTTGGCCTAGCCACAATATGCTATAGTGCTCATTTGCACCTGCATTTACTGGTGCTGAGGTCCATTTTTCTTCTTTATTACTGTAAATTATCAAGATCCTAATTATGTATTGTTTAACTTGTTTTTTTTTTTTTTAAATGGATGTCATGTTCTTAACTTGTTATTTTTCTGTCAATCTTGAGGTGATTTCTGGGTTTGTTTACTATAACAAATTTTAGGGGGATGTATTTATACATAACTAATTTCTGATAAAATTGATTAAATGCTTGACAGCAATCTCTTCTGTCCAATCATTGGTTGTGGTGCACAGATGAAAAATCTGGATGACTTTGAAGACCACTATGTTACACGACATACTGCATCTTGTTCTGTATGCTCTCGAGTTTACCCAACATCACGCCTGCTCAGCATACATGTGTCAGAGGCTCATGATTCCTTTTTTCAGGCAAAAGCTGCTCGAGGCTTTCCCATGGTAACATTTTATCTCATAGTTTTCTTTAGGGTGTCCCATAGAAAATGAGGCAAACCCCCTTACACTGTTTAAACGTATTAGGAATATATCTGAGAAGGAAGAAAGTTGAATCAGCAAAATCACACGATTAAACAACTGATGAATTGTTTGTTGTATCATCCAATTCGCGCTCGCTCTAAAAAATGGACTATCCATGCTATAAATAGATAATCATGAAGAACTGTCATTTTCTAGAAAACACTTCTTTCGGTAATAAATCAATCCTTGCACTAAAAAGAGATTTCTAAAACAAACAATGGCTGGAGAATTAAGACTGTACCGACTTTAAATCTGGTATAATTTTTTTCTTCTCTCTATTTCAAAGTAAAGTATAGTCTGAATTCTCCAGCCATTGTCTATTTCCGAAATCATTTTGAGGTAAGGAATTGATTTATTATTGAAAGAAGAGTTCTCTGGTAAATGACAGTTCTTGTTGATTCTCTATTTATATTGCGAATGACTTTTTAAGAGTGAGCATGAATTGGATGATTCAACAAACAGATTTTCAGTTGGTGAATCATGCCTTTTTGTTGATTCAACTTTCTTCCTTCTCATGCATATTCTAAATGTAGCATGCAGTTCCTGTTTGTTAAGGTAATAGCTGAAGGGATTGTGCAGGCACATACGTGAACAGTTTAGGTGCATCGTCTGGGTTAATGTGGGGGTTATACATAACCCATCCTGAATTTGCATCATCTTGCCCTGTCCCTTCCCAAGGAGATAGATGTTTGCATGTCTTTCCAAGTTTATAAGCTGCATGTTATCGGCTTTCTTGATCTTAGTGGTTTACTGGTTGAGGAGTTAACTTCTGACCACTAGGTCAAGTGTCAAGTCTGATAAACAGAACAAAACCAACAGGATAGGTGTTCTAAAATAAAATACTTTTAAAGCTTCTGTAAAATTGTAAATACATAAATAAATTATAAGCTGCATGAATCTTTGTTGCAGAATTGGCTCTCTGATTGTGGTTGGTCATGTATCTTGTATGTGTTTAGTCTGTTCAAAGAGAGTTATGTATGAGTAACAGTCTGTTTCAATCTTTTTTTAAAATGTCTGGATGTAGCTGTTTACTGGAATTCTTGTTGTCCTGTAGTATGAGTGCCTTGTGGAAGGCTGTGATATCAAGTTGAAAAGCTACAAAAGCAGGCAGCAACATCTTGTTGACAAGCATAAATTTCCAGCATCTTATGAGTTCTTCAGAAAAGCTCGTCCATCAAAAAAACAGAGGCTGAAGCCGCATCATAAACAAGCATCTAATAAGACTCAGGAGAAGTCAAGTGCAATGCAAGTTGAGGAAGAAACAATAGACAATCTCGTTTCAGCGGTATCG</genome_strand>
        <mrna_strand>TTTGATAGGCAAATCGAATTAGGGTTTCCGTTCTGGAGCCCAACTCGTCGACGTTTTGGTCCTGATGATCCCTTCTTCGCTTACGGTAACATTCAAAGAGAGCTTCTCGCTAAGCAG....................................................................................GTTGCATTGGATTTGACTGAAGAAGAGAACCAGTTAGTTCAAAATAGTATCACAGATGACGAAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTCTTCTGTCCAATCATTGGTTGTGGTGCACAGATGAAAAATCTGGATGACTTTGAAGACCACTATGTTACACGACATACTGCATCTTGTTCTGTATGCTCTCGAGTTTACCCAACATCACGCCTGCTCAGCATACATGTGTCAGAGGCTCATGATTCCTTTTTTCAGGCAAAAGCTGCTCGAGGCTTTCCCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGTGCCTTGTGGAAGGCTGTGATATCAAGTTGAAAAGCTACAAAAGCAGGCAGCAACATCTTGTTGACAAGCATAAATTTCCAGCATCTTATGAGTTCTTCAGAAAAGCTCGTCCATCAAAAAAACAGAGGCTGAAGCCGCATCATAAACAAGCATCTAATAAGACTCAGGAGAAGTCAAGTGCAATGCAAGTTGAGGAAGAAACAATAGACAATCTCGTTTCAGCGGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="56757" PGL_stop="57269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56757" e_stop="57269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56757" e_stop="57269" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56757" stop="57269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG250-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTAGATATGCTTGTGCAATTGTCCTTTTTCCACAACACAGTAGCAACAAATGGGAAAATACACAAGAACATACATTACAAGGCAACAGGTGAATAAGTATCTGGTGAAATTTACAGCAAGTTCTTTAAGTTCACTTGTACACAAATAGCTCACATGCATGTGCAGAAGGCAGGAACATGGATATTTGTCATTGATGCTGGTGACTTGGTGGTAAAGTGAATTAAATGATACGTACCTTGTCTAAGTATGAATCCAGGCATGGAATTCGGCGCCTGGACATTACAAGCTGGGAAATAAAAGCAGTCCATCGATAAGAAAAGGTTCCAGCAATAATTAAGGGCCATAACAATACATTTCATATCAAGTTCATAAACAAAATTTGGCATGCTATTGGACCATTACACATATTCATTTAACACATGATTCCTCAATGAATTCTCTAATAATCAAATACTTCTATACGCTTTAGAAGATTAGAAGGAAATGACATATTTCATTTGCTATACTTCTA</gDNA_template>
            <first_frame> S  *  I  C  L  C  N  C  P  F  S  T  T  Q  *  Q  Q  M  G  K  Y  T  R  T  Y  I  T  R  Q  Q  V  N  K  Y  L  V  K  F  T  A  S  S  L  S  S  L  V  H  K  *  L  T  C  M  C  R  R  Q  E  H  G  Y  L  S  L  M  L  V  T  W  W  *  S  E  L  N  D  T  Y  L  V  *  V  *  I  Q  A  W  N  S  A  P  G  H  Y  K  L  G  N  K  S  S  P  S  I  R  K  G  S  S  N  N  *  G  P  *  Q  Y  I  S  Y  Q  V  H  K  Q  N  L  A  C  Y  W  T  I  T  H  I  H  L  T  H  D  S  S  M  N  S  L  I  I  K  Y  F  Y  T  L  *  K  I  R  R  K  *  H  I  S  F  A  I  L  L </first_frame>
            <second_frame>  P  R  Y  A  C  A  I  V  L  F  P  Q  H  S  S  N  K  W  E  N  T  Q  E  H  T  L  Q  G  N  R  *  I  S  I  W  *  N  L  Q  Q  V  L  *  V  H  L  Y  T  N  S  S  H  A  C  A  E  G  R  N  M  D  I  C  H  *  C  W  *  L  G  G  K  V  N  *  M  I  R  T  L  S  K  Y  E  S  R  H  G  I  R  R  L  D  I  T  S  W  E  I  K  A  V  H  R  *  E  K  V  P  A  I  I  K  G  H  N  N  T  F  H  I  K  F  I  N  K  I  W  H  A  I  G  P  L  H  I  F  I  *  H  M  I  P  Q  *  I  L  *  *  S  N  T  S  I  R  F  R  R  L  E  G  N  D  I  F  H  L  L  Y  F   </second_frame>
            <third_frame>   L  D  M  L  V  Q  L  S  F  F  H  N  T  V  A  T  N  G  K  I  H  K  N  I  H  Y  K  A  T  G  E  *  V  S  G  E  I  Y  S  K  F  F  K  F  T  C  T  Q  I  A  H  M  H  V  Q  K  A  G  T  W  I  F  V  I  D  A  G  D  L  V  V  K  *  I  K  *  Y  V  P  C  L  S  M  N  P  G  M  E  F  G  A  W  T  L  Q  A  G  K  *  K  Q  S  I  D  K  K  R  F  Q  Q  *  L  R  A  I  T  I  H  F  I  S  S  S  *  T  K  F  G  M  L  L  D  H  Y  T  Y  S  F  N  T  *  F  L  N  E  F  S  N  N  Q  I  L  L  Y  A  L  E  D  *  K  E  M  T  Y  F  I  C  Y  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0204A09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="58536" PGL_stop="58018"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58536" e_stop="58018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58536" e_stop="58018" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58536" stop="58018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG250-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAAAATCACGATTGTGCTTAAAGTATTTATTGGTAAATAAAAAATCAGATTTCAAAAGTATCTTGACAACCCAAATCAACCTGCTTAACAGAAGTTGTATATGCAGTTCCTAGGACTATCAACCTAATCTCATGTTGCTTTTAATTCATTAAATTAAGTAGAGATCTCCTTCTCCGGTTCTCCCAATCTGTATTCTGACAATTCTCAAACACCTTCAGTACATGCTGAAATATAAAAAGGGCTGCCCACTGTACTAAAGCTCCTTCACACATGCTGAAGTATGCAAATGTTAATTTTGATAGGAATAATGCAAATTCTTGGATTTTCAATGAGATTAATGATTAACATTTGATATCAGGCCCGTTTTCAGTAATTGATGAGCATTTCAGCACAATTCTTCCTAATAGTTTTGATGCAATTGGCTTAATGCTCATGATTCGCATCATACACCAGCACCAGGTATATCCCTACACTTCTGTTCTCGTATTAAATTTCAAAGCAAACACAGCTAGTATTA</gDNA_template>
            <first_frame> I  K  I  T  I  V  L  K  V  F  I  G  K  *  K  I  R  F  Q  K  Y  L  D  N  P  N  Q  P  A  *  Q  K  L  Y  M  Q  F  L  G  L  S  T  *  S  H  V  A  F  N  S  L  N  *  V  E  I  S  F  S  G  S  P  N  L  Y  S  D  N  S  Q  T  P  S  V  H  A  E  I  *  K  G  L  P  T  V  L  K  L  L  H  T  C  *  S  M  Q  M  L  I  L  I  G  I  M  Q  I  L  G  F  S  M  R  L  M  I  N  I  *  Y  Q  A  R  F  Q  *  L  M  S  I  S  A  Q  F  F  L  I  V  L  M  Q  L  A  *  C  S  *  F  A  S  Y  T  S  T  R  Y  I  P  T  L  L  F  S  Y  *  I  S  K  Q  T  Q  L  V  L </first_frame>
            <second_frame>  *  K  S  R  L  C  L  K  Y  L  L  V  N  K  K  S  D  F  K  S  I  L  T  T  Q  I  N  L  L  N  R  S  C  I  C  S  S  *  D  Y  Q  P  N  L  M  L  L  L  I  H  *  I  K  *  R  S  P  S  P  V  L  P  I  C  I  L  T  I  L  K  H  L  Q  Y  M  L  K  Y  K  K  G  C  P  L  Y  *  S  S  F  T  H  A  E  V  C  K  C  *  F  *  *  E  *  C  K  F  L  D  F  Q  *  D  *  *  L  T  F  D  I  R  P  V  F  S  N  *  *  A  F  Q  H  N  S  S  *  *  F  *  C  N  W  L  N  A  H  D  S  H  H  T  P  A  P  G  I  S  L  H  F  C  S  R  I  K  F  Q  S  K  H  S  *  Y   </second_frame>
            <third_frame>   K  N  H  D  C  A  *  S  I  Y  W  *  I  K  N  Q  I  S  K  V  S  *  Q  P  K  S  T  C  L  T  E  V  V  Y  A  V  P  R  T  I  N  L  I  S  C  C  F  *  F  I  K  L  S  R  D  L  L  L  R  F  S  Q  S  V  F  *  Q  F  S  N  T  F  S  T  C  *  N  I  K  R  A  A  H  C  T  K  A  P  S  H  M  L  K  Y  A  N  V  N  F  D  R  N  N  A  N  S  W  I  F  N  E  I  N  D  *  H  L  I  S  G  P  F  S  V  I  D  E  H  F  S  T  I  L  P  N  S  F  D  A  I  G  L  M  L  M  I  R  I  I  H  Q  H  Q  V  Y  P  Y  T  S  V  L  V  L  N  F  K  A  N  T  A  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0204A09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="115330" PGL_stop="117533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115330" e_stop="115551"/>
            <exon e_start="115669" e_stop="115784"/>
            <exon e_start="116540" e_stop="116593"/>
            <exon e_start="116701" e_stop="116725"/>
            <exon e_start="116903" e_stop="117025"/>
            <exon e_start="117423" e_stop="117533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.901" e_score="0.950"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.983"/>
          <exon-intron don_prob="0.997" acc_prob="0.776" e_score="0.963"/>
          <exon-intron don_prob="0.927" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.955" e_score="0.984"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="115330" e_stop="115551" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.901">
            <gDNA_intron_boundary i_start="115552" i_stop="115668" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="115669" e_stop="115784" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="115785" i_stop="116539" i_length="755"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="116540" e_stop="116593" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.776">
            <gDNA_intron_boundary i_start="116594" i_stop="116700" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116701" e_stop="116725" e_length="25"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.917">
            <gDNA_intron_boundary i_start="116726" i_stop="116902" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="116903" e_stop="117025" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.955">
            <gDNA_intron_boundary i_start="117026" i_stop="117422" i_length="397"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="117423" e_stop="117533" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115330" stop="115551"/>
              <exon start="115669" stop="115784"/>
              <exon start="116540" stop="116593"/>
              <exon start="116701" stop="116725"/>
              <exon start="116903" stop="117025"/>
              <exon start="117423" stop="117533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g01920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTGTAGGTGTGGAAGAGATGTCATTGGAAGCTAAAGCATTGGGACACTCTGGAATTGCCGGAGCAGTGCCTCTCTCATTCCGTCGCTCTTTTTCTTCATTCCCCACTCGTTTGTCGTTCCACACTGCCGTTCCTCCCCAAACCCGCCGATTCCAATCCTTGGCGGTTATTAAGAGAAGTCCTAAACGCCTCAAATACTCGGCTCCTCGCTTAACTAAG : GAAGATGGATTGCTCTATGTTCAAGTTGATCAATTTGGCTCGGATTCTTGGAAGTTGGATCCAGTTGTTGAACTTCTTAAAGGAGGAGCTGTTGGAGTCATTCCCACTGACACTCT : GTATGCAATAGTTTGTGATCTGAGCAGTCATTCAGCCATTGAACGTCTTCGTAG : AATAAAAGAGATAGAACCTTCAAAG : CCCCTAAGTATCATTTGTCGATCTTTCCGCGACATAGATACATATACAACTGGATTTCCCCGTGGTAATGCCCAAGGTCTTACAGACATTTTTCGAGCAGTCAAGCACTGTCTACCTGGTCCT : TACACTTTCATCTTAACTGCTAGCAAACAGCTACCAAAACAATGCACGAGATACGGGTCTGCAACTTCCAAATATGCTTCAAGGAAAAATGTTGGTGTTCGTATACCTGAT</gDNA_template>
            <first_frame> M  I  V  G  V  E  E  M  S  L  E  A  K  A  L  G  H  S  G  I  A  G  A  V  P  L  S  F  R  R  S  F  S  S  F  P  T  R  L  S  F  H  T  A  V  P  P  Q  T  R  R  F  Q  S  L  A  V  I  K  R  S  P  K  R  L  K  Y  S  A  P  R  L  T  K  :  E  D  G  L  L  Y  V  Q  V  D  Q  F  G  S  D  S  W  K  L  D  P  V  V  E  L  L  K  G  G  A  V  G  V  I  P  T  D  T  L :   Y  A  I  V  C  D  L  S  S  H  S  A  I  E  R  L  R  R :   I  K  E  I  E  P  S  K  :  P  L  S  I  I  C  R  S  F  R  D  I  D  T  Y  T  T  G  F  P  R  G  N  A  Q  G  L  T  D  I  F  R  A  V  K  H  C  L  P  G  P  :  Y  T  F  I  L  T  A  S  K  Q  L  P  K  Q  C  T  R  Y  G  S  A  T  S  K  Y  A  S  R  K  N  V  G  V  R  I  P  D </first_frame>
            <second_frame>  *  L  *  V  W  K  R  C  H  W  K  L  K  H  W  D  T  L  E  L  P  E  Q  C  L  S  H  S  V  A  L  F  L  H  S  P  L  V  C  R  S  T  L  P  F  L  P  K  P  A  D  S  N  P  W  R  L  L  R  E  V  L  N  A  S  N  T  R  L  L  A  *  L  R :   K  M  D  C  S  M  F  K  L  I  N  L  A  R  I  L  G  S  W  I  Q  L  L  N  F  L  K  E  E  L  L  E  S  F  P  L  T  L   : C  M  Q  *  F  V  I  *  A  V  I  Q  P  L  N  V  F  V   : E  *  K  R  *  N  L  Q  S :   P  *  V  S  F  V  D  L  S  A  T  *  I  H  I  Q  L  D  F  P  V  V  M  P  K  V  L  Q  T  F  F  E  Q  S  S  T  V  Y  L  V  L :   T  L  S  S  *  L  L  A  N  S  Y  Q  N  N  A  R  D  T  G  L  Q  L  P  N  M  L  Q  G  K  M  L  V  F  V  Y  L   </second_frame>
            <third_frame>   D  C  R  C  G  R  D  V  I  G  S  *  S  I  G  T  L  W  N  C  R  S  S  A  S  L  I  P  S  L  F  F  F  I  P  H  S  F  V  V  P  H  C  R  S  S  P  N  P  P  I  P  I  L  G  G  Y  *  E  K  S  *  T  P  Q  I  L  G  S  S  L  N  *   : G  R  W  I  A  L  C  S  S  *  S  I  W  L  G  F  L  E  V  G  S  S  C  *  T  S  *  R  R  S  C  W  S  H  S  H  *  H  S  :  V  C  N  S  L  *  S  E  Q  S  F  S  H  *  T  S  S  *  :  N  K  R  D  R  T  F  K   : A  P  K  Y  H  L  S  I  F  P  R  H  R  Y  I  Y  N  W  I  S  P  W  *  C  P  R  S  Y  R  H  F  S  S  S  Q  A  L  S  T  W  S   : L  H  F  H  L  N  C  *  Q  T  A  T  K  T  M  H  E  I  R  V  C  N  F  Q  I  C  F  K  E  K  C  W  C  S  Y  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0204A09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115330" stop="115551"/>
                    <exon start="115669" stop="115784"/>
                    <exon start="116540" stop="116593"/>
                    <exon start="116701" stop="116725"/>
                    <exon start="116903" stop="117025"/>
                    <exon start="117423" stop="117533"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIVGVEEMSLEAKALGHSGIAGAVPLSFRRSFSSFPTRLSFHTAVPPQTRRFQSLAVIKRSPKRLKYSAPRLTKEDGLLYVQVDQFGSDSWKLDPVVELLKGGAVGVIPTDTLYAIVCDLSSHSAIERLRRIKEIEPSKPLSIICRSFRDIDTYTTGFPRGNAQGLTDIFRAVKHCLPGPYTFILTASKQLPKQCTRYGSATSKYASRKNVGVRIPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="120330" PGL_stop="120878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120330" e_stop="120878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="120330" e_stop="120878" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120330" stop="120878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTAGAATTTCTTATCCAAAACAAAATATGCCTCTTATCCCAGAAGAGCCTTTGCTCGCCTCTAACCCAGATCGATTCTGTATGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAAACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGCGGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGG</gDNA_template>
            <first_frame> P  *  N  F  L  S  K  T  K  Y  A  S  Y  P  R  R  A  F  A  R  L  *  P  R  S  I  L  Y  V  P  N  S  V  S  T  D  L  G  N  V  Q  E  S  H  G  I  F  L  D  G  R  R  S  R  S  L  H  R  Y  S  S  L  G  K  P  N  I  R  *  K  A  F  H  H  S  C  S  C  L  F  C  R  L  R  R  H  R  F  R  E  P  R  W  K  V  H  E  R  C  P  G  C  R  G  S  C  F  L  W  V  P  N  R  H  *  E  Y  P  F  R  D  V  Q  F  A  V  G  V  V  H  Q  G  F  *  R  K  E  Q  I  V  P  C  N  *  D  N  P  L  C  *  K  E  G  E  M  G  P  S  L  D  R  W  V  R  N  F  R  G  A  F  G  G  F  C  L  C  *  R  D  F  L  Q  R </first_frame>
            <second_frame>  P  R  I  S  Y  P  K  Q  N  M  P  L  I  P  E  E  P  L  L  A  S  N  P  D  R  F  C  M  F  P  I  Q  Y  P  Q  I  W  E  M  Y  K  K  A  M  A  S  F  W  T  A  E  E  V  D  L  S  T  D  T  R  H  W  E  N  L  T  S  G  E  R  H  F  I  T  H  V  L  A  F  F  A  A  S  D  G  I  V  L  E  N  L  A  G  R  F  M  K  D  V  Q  V  A  E  A  R  A  F  Y  G  F  Q  I  A  I  E  N  I  H  S  E  M  Y  S  L  L  L  E  S  Y  I  K  D  S  D  E  K  S  K  L  F  R  A  I  E  T  I  P  C  V  E  K  K  A  K  W  A  L  R  W  I  D  G  S  E  T  F  A  E  R  L  V  A  F  A  C  V  E  G  I  F  F  S   </second_frame>
            <third_frame>   L  E  F  L  I  Q  N  K  I  C  L  L  S  Q  K  S  L  C  S  P  L  T  Q  I  D  S  V  C  S  Q  F  S  I  H  R  F  G  K  C  T  R  K  P  W  H  L  S  G  R  Q  K  K  S  I  S  P  P  I  L  V  T  G  K  T  *  H  P  V  K  G  I  S  S  L  M  F  L  P  F  L  P  P  Q  T  A  S  F  *  R  T  S  L  E  G  S  *  K  M  S  R  L  P  R  L  V  L  S  M  G  S  K  S  P  L  R  I  S  I  P  R  C  T  V  C  C  W  S  R  T  S  R  I  L  T  K  R  A  N  C  S  V  Q  L  R  Q  S  L  V  L  K  R  R  R  N  G  P  F  V  G  S  M  G  P  K  L  S  R  S  V  W  W  L  L  L  V  L  K  G  F  S  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0204A09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120331" stop="120876"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRISYPKQNMPLIPEEPLLASNPDRFCMFPIQYPQIWEMYKKAMASFWTAEEVDLSTDTRHWENLTSGERHFITHVLAFFAASDGIVLENLAGRFMKDVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSKLFRAIETIPCVEKKAKWALRWIDGSETFAERLVAFACVEGIFFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="125446" PGL_stop="122376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125446" e_stop="125330"/>
            <exon e_start="125245" e_stop="125178"/>
            <exon e_start="123943" e_stop="123745"/>
            <exon e_start="122612" e_stop="122376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125446" e_stop="125330" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125329" i_stop="125246" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125245" e_stop="125178" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.936">
            <gDNA_intron_boundary i_start="125177" i_stop="123944" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123943" e_stop="123745" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="123744" i_stop="122613" i_length="1132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122612" e_stop="122376" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125446" stop="125330"/>
              <exon start="125245" stop="125178"/>
              <exon start="123943" stop="123745"/>
              <exon start="122612" stop="122376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g14140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATAGGCAAATCGAATTAGGGTTTCCGTTCTGGAGCCCAACTCGTCGACGTTTTGGTCCTGATGATCCCTTCTTCGCTTACGGTAACATTCAAAGAGAGCTTCTCGCTAAGCAG : GTTGCATTGGATTTGACTGAAGAAGAGAACCAGTTAGTTCAAAATAGTATCACAGATGACGAAATCAG : CAATCTCTTCTGTCCAATCATTGGTTGTGGTGCACAGATGAAAAATCTGGATGACTTTGAAGACCACTATGTTACACGACATACTGCATCTTGTTCTGTATGCTCTCGAGTTTACCCAACATCACGCCTGCTCAGCATACATGTGTCAGAGGCTCATGATTCCTTTTTTCAGGCAAAAGCTGCTCGAGGCTTTCCCATG : TATGAGTGCCTTGTGGAAGGCTGTGATATCAAGTTGAAAAGCTACAAAAGCAGGCAGCAACATCTTGTTGACAAGCATAAATTTCCAGCATCTTATGAGTTCTTCAGAAAAGCTCGTCCATCAAAAAAACAGAGGCTGAAGCCGCATCATAAACAAGCATCTAATAAGACTCAGGAGAAGTCAAGTGCAATGCAAGTTGAGGAAGAAACAATAGACAATCTCGTTTCAGCGGTATCG</gDNA_template>
            <first_frame> F  D  R  Q  I  E  L  G  F  P  F  W  S  P  T  R  R  R  F  G  P  D  D  P  F  F  A  Y  G  N  I  Q  R  E  L  L  A  K  Q  :  V  A  L  D  L  T  E  E  E  N  Q  L  V  Q  N  S  I  T  D  D  E  I  S :   N  L  F  C  P  I  I  G  C  G  A  Q  M  K  N  L  D  D  F  E  D  H  Y  V  T  R  H  T  A  S  C  S  V  C  S  R  V  Y  P  T  S  R  L  L  S  I  H  V  S  E  A  H  D  S  F  F  Q  A  K  A  A  R  G  F  P  M  :  Y  E  C  L  V  E  G  C  D  I  K  L  K  S  Y  K  S  R  Q  Q  H  L  V  D  K  H  K  F  P  A  S  Y  E  F  F  R  K  A  R  P  S  K  K  Q  R  L  K  P  H  H  K  Q  A  S  N  K  T  Q  E  K  S  S  A  M  Q  V  E  E  E  T  I  D  N  L  V  S  A  V  S </first_frame>
            <second_frame>  L  I  G  K  S  N  *  G  F  R  S  G  A  Q  L  V  D  V  L  V  L  M  I  P  S  S  L  T  V  T  F  K  E  S  F  S  L  S  R :   L  H  W  I  *  L  K  K  R  T  S  *  F  K  I  V  S  Q  M  T  K  S   : A  I  S  S  V  Q  S  L  V  V  V  H  R  *  K  I  W  M  T  L  K  T  T  M  L  H  D  I  L  H  L  V  L  Y  A  L  E  F  T  Q  H  H  A  C  S  A  Y  M  C  Q  R  L  M  I  P  F  F  R  Q  K  L  L  E  A  F  P  C :   M  S  A  L  W  K  A  V  I  S  S  *  K  A  T  K  A  G  S  N  I  L  L  T  S  I  N  F  Q  H  L  M  S  S  S  E  K  L  V  H  Q  K  N  R  G  *  S  R  I  I  N  K  H  L  I  R  L  R  R  S  Q  V  Q  C  K  L  R  K  K  Q  *  T  I  S  F  Q  R  Y   </second_frame>
            <third_frame>   *  *  A  N  R  I  R  V  S  V  L  E  P  N  S  S  T  F  W  S  *  *  S  L  L  R  L  R  *  H  S  K  R  A  S  R  *  A   : G  C  I  G  F  D  *  R  R  E  P  V  S  S  K  *  Y  H  R  *  R  N  Q  :  Q  S  L  L  S  N  H  W  L  W  C  T  D  E  K  S  G  *  L  *  R  P  L  C  Y  T  T  Y  C  I  L  F  C  M  L  S  S  L  P  N  I  T  P  A  Q  H  T  C  V  R  G  S  *  F  L  F  S  G  K  S  C  S  R  L  S  H   : V  *  V  P  C  G  R  L  *  Y  Q  V  E  K  L  Q  K  Q  A  A  T  S  C  *  Q  A  *  I  S  S  I  L  *  V  L  Q  K  S  S  S  I  K  K  T  E  A  E  A  A  S  *  T  S  I  *  *  D  S  G  E  V  K  C  N  A  S  *  G  R  N  N  R  Q  S  R  F  S  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0204A09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125446" stop="125330"/>
                    <exon start="125245" stop="125178"/>
                    <exon start="123943" stop="123745"/>
                    <exon start="122612" stop="122376"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDRQIELGFPFWSPTRRRFGPDDPFFAYGNIQRELLAKQVALDLTEEENQLVQNSITDDEISNLFCPIIGCGAQMKNLDDFEDHYVTRHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKAARGFPMYECLVEGCDIKLKSYKSRQQHLVDKHKFPASYEFFRKARPSKKQRLKPHHKQASNKTQEKSSAMQVEEETIDNLVSAVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 117 chains have been computed
$ 
$ memory statistics:
$ 9656 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1931 bytes was the average size of a spliced alignment
$ 10488 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2097 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 117 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:06:26
-->
